Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74503.t1 | XP_003611849.1 | 91.8 | 184 | 15 | 0 | 1 | 184 | 1 | 184 | 1.50E-54 | 222.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74503.t1 | G7K9G4 | 91.8 | 184 | 15 | 0 | 1 | 184 | 1 | 184 | 1.1e-54 | 222.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene74503 | 0.800795 | 1.22E-48 | -1.69E-46 |
| MS.gene049825 | MS.gene74503 | 0.828065 | 1.11E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene74503 | 0.838185 | 3.34E-57 | -1.69E-46 |
| MS.gene050277 | MS.gene74503 | 0.816775 | 4.65E-52 | -1.69E-46 |
| MS.gene050303 | MS.gene74503 | 0.877979 | 4.07E-69 | -1.69E-46 |
| MS.gene050355 | MS.gene74503 | 0.800343 | 1.51E-48 | -1.69E-46 |
| MS.gene050885 | MS.gene74503 | 0.809555 | 1.79E-50 | -1.69E-46 |
| MS.gene05134 | MS.gene74503 | 0.81619 | 6.28E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene74503 | 0.801433 | 9.03E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene74503 | 0.809091 | 2.25E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene74503 | 0.836625 | 8.39E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene74503 | 0.814231 | 1.71E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene74503 | 0.80135 | 9.39E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene74503 | 0.801943 | 7.09E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene74503 | 0.802446 | 5.59E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene74503 | 0.810352 | 1.20E-50 | -1.69E-46 |
| MS.gene053080 | MS.gene74503 | 0.82487 | 6.39E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene74503 | 0.840791 | 7.03E-58 | -1.69E-46 |
| MS.gene053230 | MS.gene74503 | 0.817448 | 3.28E-52 | -1.69E-46 |
| MS.gene05365 | MS.gene74503 | 0.803997 | 2.67E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene74503 | 0.802055 | 6.73E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene74503 | 0.80203 | 6.81E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene74503 | 0.802511 | 5.42E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene74503 | 0.805966 | 1.03E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene74503 | 0.812063 | 5.12E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene74503 | 0.869807 | 2.35E-66 | -1.69E-46 |
| MS.gene056091 | MS.gene74503 | 0.848163 | 7.30E-60 | -1.69E-46 |
| MS.gene056215 | MS.gene74503 | 0.816451 | 5.49E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene74503 | 0.849658 | 2.81E-60 | -1.69E-46 |
| MS.gene056506 | MS.gene74503 | 0.804137 | 2.50E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene74503 | 0.858739 | 6.70E-63 | -1.69E-46 |
| MS.gene056631 | MS.gene74503 | 0.842293 | 2.82E-58 | -1.69E-46 |
| MS.gene05689 | MS.gene74503 | 0.850837 | 1.31E-60 | -1.69E-46 |
| MS.gene056986 | MS.gene74503 | 0.827634 | 1.40E-54 | -1.69E-46 |
| MS.gene057079 | MS.gene74503 | 0.816127 | 6.49E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene74503 | 0.805255 | 1.46E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene74503 | 0.810137 | 1.34E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene74503 | 0.817777 | 2.77E-52 | -1.69E-46 |
| MS.gene058498 | MS.gene74503 | 0.819616 | 1.06E-52 | -1.69E-46 |
| MS.gene058549 | MS.gene74503 | 0.806788 | 6.94E-50 | -1.69E-46 |
| MS.gene058908 | MS.gene74503 | 0.841999 | 3.38E-58 | -1.69E-46 |
| MS.gene058911 | MS.gene74503 | 0.846078 | 2.72E-59 | -1.69E-46 |
| MS.gene05953 | MS.gene74503 | 0.819187 | 1.33E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene74503 | 0.856697 | 2.70E-62 | -1.69E-46 |
| MS.gene05979 | MS.gene74503 | 0.810412 | 1.17E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene74503 | 0.835509 | 1.61E-56 | -1.69E-46 |
| MS.gene059935 | MS.gene74503 | 0.875456 | 3.04E-68 | -1.69E-46 |
| MS.gene06001 | MS.gene74503 | 0.807524 | 4.85E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene74503 | 0.801857 | 7.39E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene74503 | 0.804973 | 1.67E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene74503 | 0.878836 | 2.03E-69 | -1.69E-46 |
| MS.gene060572 | MS.gene74503 | 0.801513 | 8.69E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene74503 | 0.846417 | 2.20E-59 | -1.69E-46 |
| MS.gene060830 | MS.gene74503 | 0.877233 | 7.40E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74503.t1 | MTR_5g018550 | 95.652 | 184 | 8 | 0 | 1 | 184 | 1 | 184 | 3.83e-124 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74503.t1 | AT4G37090 | 44.974 | 189 | 92 | 4 | 1 | 184 | 1 | 182 | 4.71e-33 | 116 |
| MS.gene74503.t1 | AT4G37090 | 45.946 | 185 | 86 | 5 | 1 | 180 | 1 | 176 | 1.68e-26 | 100 |
Find 37 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGAACGTCGGCGAAAA+TGG | 0.201521 | 5.2:-10399581 | MS.gene74503:CDS |
| AAGCATTTCAACAATGCTTT+TGG | 0.238659 | 5.2:+10399431 | None:intergenic |
| GCTGGTTTGCTCACAATAAT+AGG | 0.265535 | 5.2:+10399118 | None:intergenic |
| AAGAGAAAATCCAAGGATTC+AGG | 0.267478 | 5.2:-10399249 | MS.gene74503:CDS |
| TACGTCTACTTTCCAGTTCC+GGG | 0.304004 | 5.2:-10398997 | MS.gene74503:CDS |
| TTACGTCTACTTTCCAGTTC+CGG | 0.332647 | 5.2:-10398998 | MS.gene74503:CDS |
| CCTTGGATTTCTTGAAAGAA+AGG | 0.335846 | 5.2:-10399072 | MS.gene74503:CDS |
| TGAGGAGGAAGATAAATTAA+AGG | 0.340761 | 5.2:-10399286 | MS.gene74503:CDS |
| AGAGATTCGAAAGATTAAAA+AGG | 0.343332 | 5.2:-10400768 | MS.gene74503:CDS |
| CCCTACTAACCCTGAATCCT+TGG | 0.350071 | 5.2:+10399239 | None:intergenic |
| TTCAAAACAGCAGACGATCT+TGG | 0.392274 | 5.2:+10399037 | None:intergenic |
| AGAAATCCCACAGCAGTGTT+TGG | 0.406449 | 5.2:+10399456 | None:intergenic |
| GAAAGAACGTCGGCGAAAAT+GGG | 0.410361 | 5.2:-10399580 | MS.gene74503:CDS |
| AAGGCAGTCTTTAAGCATTC+AGG | 0.411790 | 5.2:+10399091 | None:intergenic |
| TGTTCAGCTGTGAATTCCTC+AGG | 0.416780 | 5.2:+10400946 | None:intergenic |
| TGAGGAATTCACAGCTGAAC+AGG | 0.425645 | 5.2:-10400944 | MS.gene74503:intron |
| TGTTGAAATGCTTGCAGCTA+AGG | 0.442831 | 5.2:-10399421 | MS.gene74503:CDS |
| CTGGCGTATGATCCCGGAAC+TGG | 0.452601 | 5.2:+10398985 | None:intergenic |
| AATTAAAGGCTACCACTTCA+AGG | 0.462256 | 5.2:-10399272 | MS.gene74503:CDS |
| TTTAAGCATTCAGGAGGAGC+TGG | 0.495755 | 5.2:+10399100 | None:intergenic |
| AGAGAAAATCCAAGGATTCA+GGG | 0.497993 | 5.2:-10399248 | MS.gene74503:intron |
| TCATTTCTGGCGTATGATCC+CGG | 0.513063 | 5.2:+10398979 | None:intergenic |
| TTAGTAGCTTTGGATGGTCG+AGG | 0.518576 | 5.2:+10399543 | None:intergenic |
| ATCAGAATCGTTGTCTGACA+TGG | 0.553832 | 5.2:+10400972 | None:intergenic |
| AAGTAGACGTAATGCTTGGT+TGG | 0.572908 | 5.2:+10399009 | None:intergenic |
| TGAATGCTTAAAGACTGCCT+TGG | 0.581346 | 5.2:-10399089 | MS.gene74503:CDS |
| TGGAAAGTAGACGTAATGCT+TGG | 0.583915 | 5.2:+10399005 | None:intergenic |
| GGGATCATACGCCAGAAATG+AGG | 0.587190 | 5.2:-10398977 | None:intergenic |
| CCTTTCTTTCAAGAAATCCA+AGG | 0.588770 | 5.2:+10399072 | None:intergenic |
| GTTCAGCTGTGAATTCCTCA+GGG | 0.589265 | 5.2:+10400947 | None:intergenic |
| TTCAAGGAAGAGAAAATCCA+AGG | 0.598658 | 5.2:-10399256 | MS.gene74503:CDS |
| TTTATTAACTGAGACTGATG+AGG | 0.602529 | 5.2:-10399304 | MS.gene74503:CDS |
| ATTAACTGAGACTGATGAGG+AGG | 0.608820 | 5.2:-10399301 | MS.gene74503:CDS |
| GCAGTCTTTAAGCATTCAGG+AGG | 0.620920 | 5.2:+10399094 | None:intergenic |
| TTCAGCTGTGAATTCCTCAG+GGG | 0.664205 | 5.2:+10400948 | None:intergenic |
| CAACGATTCTGATGCCCCTG+AGG | 0.672395 | 5.2:-10400962 | MS.gene74503:CDS |
| ATATTGAAGAGAAAGAACGT+CGG | 0.783151 | 5.2:-10399590 | MS.gene74503:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTTTCATAAATTATTAT+GGG | - | chr5.2:10400133-10400152 | MS.gene74503:intron | 10.0% |
| !! | ATTCATTGAAACAAATAAAT+TGG | + | chr5.2:10399060-10399079 | None:intergenic | 15.0% |
| !!! | AAGAATTTTGATAAAAGATT+TGG | - | chr5.2:10399812-10399831 | MS.gene74503:intron | 15.0% |
| !!! | GTTAGTTTCATAAATTATTA+TGG | - | chr5.2:10400132-10400151 | MS.gene74503:intron | 15.0% |
| !!! | TATTTAAATTTTAACAACAC+TGG | - | chr5.2:10400042-10400061 | MS.gene74503:intron | 15.0% |
| !!! | TTTAATTTGTTTTGTTTTTG+AGG | - | chr5.2:10399098-10399117 | MS.gene74503:CDS | 15.0% |
| !!! | TTTTAACATTGATAGATTAT+TGG | - | chr5.2:10399641-10399660 | MS.gene74503:intron | 15.0% |
| !!! | TTTTCAATCTTATTTTTGTT+GGG | - | chr5.2:10399338-10399357 | MS.gene74503:intron | 15.0% |
| !! | AAATAAATTGGAATTGGAAT+TGG | + | chr5.2:10399048-10399067 | None:intergenic | 20.0% |
| !! | AAGGAAATATATATAACTAC+AGG | + | chr5.2:10400792-10400811 | None:intergenic | 20.0% |
| !! | AATTTAAATAACAGCTATAG+TGG | + | chr5.2:10400032-10400051 | None:intergenic | 20.0% |
| !! | ATAATTGCATAGAAATAGAT+AGG | + | chr5.2:10400743-10400762 | None:intergenic | 20.0% |
| !! | TGAAACAAATAAATTGGAAT+TGG | + | chr5.2:10399054-10399073 | None:intergenic | 20.0% |
| !! | TTAAAAAGGAAAACAAAATC+AGG | - | chr5.2:10399195-10399214 | MS.gene74503:intron | 20.0% |
| !!! | ATGAGGTTAATTTAAGTTAT+TGG | - | chr5.2:10399225-10399244 | MS.gene74503:intron | 20.0% |
| !!! | GTTTTCAATCTTATTTTTGT+TGG | - | chr5.2:10399337-10399356 | MS.gene74503:intron | 20.0% |
| !!! | TCATTTTGCTGATTATTAAT+TGG | - | chr5.2:10399761-10399780 | MS.gene74503:intron | 20.0% |
| !!! | TTTCAATCTTATTTTTGTTG+GGG | - | chr5.2:10399339-10399358 | MS.gene74503:intron | 20.0% |
| ! | AGAGATTCGAAAGATTAAAA+AGG | - | chr5.2:10399181-10399200 | MS.gene74503:intron | 25.0% |
| ! | ATAGATTATTGGATAATCTC+GGG | - | chr5.2:10399652-10399671 | MS.gene74503:intron | 25.0% |
| ! | ATATTAGACATCACTATATG+TGG | + | chr5.2:10400319-10400338 | None:intergenic | 25.0% |
| ! | ATGTCTAATATGACTTTACA+TGG | - | chr5.2:10400328-10400347 | MS.gene74503:intron | 25.0% |
| ! | CAAAGCTACTAAAAAATCTA+GGG | - | chr5.2:10400417-10400436 | MS.gene74503:intron | 25.0% |
| ! | CTCTTATACTGCATAATTAT+GGG | - | chr5.2:10400240-10400259 | MS.gene74503:intron | 25.0% |
| ! | GATAGATTATTGGATAATCT+CGG | - | chr5.2:10399651-10399670 | MS.gene74503:intron | 25.0% |
| ! | TCTCTTATACTGCATAATTA+TGG | - | chr5.2:10400239-10400258 | MS.gene74503:intron | 25.0% |
| ! | TCTTTAGATAAATCTCTAAG+AGG | - | chr5.2:10400599-10400618 | MS.gene74503:intron | 25.0% |
| !! | TTTGCTGATTATTAATTGGT+TGG | - | chr5.2:10399765-10399784 | MS.gene74503:intron | 25.0% |
| ATATTGAAGAGAAAGAACGT+CGG | - | chr5.2:10400359-10400378 | MS.gene74503:intron | 30.0% | |
| CAAAATCAGGTTTAGTTATG+AGG | - | chr5.2:10399208-10399227 | MS.gene74503:intron | 30.0% | |
| CCAAAGCTACTAAAAAATCT+AGG | - | chr5.2:10400416-10400435 | MS.gene74503:intron | 30.0% | |
| GATATTGATCAATCTTGATG+TGG | - | chr5.2:10399406-10399425 | MS.gene74503:intron | 30.0% | |
| TAATATGACTTTACATGGCA+GGG | - | chr5.2:10400333-10400352 | MS.gene74503:intron | 30.0% | |
| TGAGGAGGAAGATAAATTAA+AGG | - | chr5.2:10400663-10400682 | MS.gene74503:intron | 30.0% | |
| TGCAATGAGTAAAGTAACTA+GGG | - | chr5.2:10399282-10399301 | MS.gene74503:CDS | 30.0% | |
| TGCAGTATAAGAGAGAATAA+AGG | + | chr5.2:10400233-10400252 | None:intergenic | 30.0% | |
| TTATTAATTGGTTGGCACTA+CGG | - | chr5.2:10399773-10399792 | MS.gene74503:intron | 30.0% | |
| TTGCAATGAGTAAAGTAACT+AGG | - | chr5.2:10399281-10399300 | MS.gene74503:CDS | 30.0% | |
| TTTATTAACTGAGACTGATG+AGG | - | chr5.2:10400645-10400664 | MS.gene74503:intron | 30.0% | |
| ! | AAGCATTTCAACAATGCTTT+TGG | + | chr5.2:10400521-10400540 | None:intergenic | 30.0% |
| ! | AGCATTTCAACAATGCTTTT+GGG | + | chr5.2:10400520-10400539 | None:intergenic | 30.0% |
| ! | ATTTTGTACTGAATAGTGTG+TGG | + | chr5.2:10399504-10399523 | None:intergenic | 30.0% |
| !!! | CCTAGATTTTTTAGTAGCTT+TGG | + | chr5.2:10400419-10400438 | None:intergenic | 30.0% |
| !!! | GATTTTTTAGTAGCTTTGGA+TGG | + | chr5.2:10400415-10400434 | None:intergenic | 30.0% |
| AAGAGAAAATCCAAGGATTC+AGG | - | chr5.2:10400700-10400719 | MS.gene74503:intron | 35.0% | |
| AATTAAAGGCTACCACTTCA+AGG | - | chr5.2:10400677-10400696 | MS.gene74503:intron | 35.0% | |
| AGAGAAAATCCAAGGATTCA+GGG | - | chr5.2:10400701-10400720 | MS.gene74503:intron | 35.0% | |
| AGCTAAGGAGAAGTAATGAT+TGG | - | chr5.2:10400543-10400562 | MS.gene74503:intron | 35.0% | |
| ATATTGCAGTTATAGCGTAG+CGG | - | chr5.2:10399452-10399471 | MS.gene74503:CDS | 35.0% | |
| ATCGACAACATTAGTTACGT+TGG | - | chr5.2:10399609-10399628 | MS.gene74503:intron | 35.0% | |
| CAACACTGGAACATATGAAA+AGG | - | chr5.2:10400056-10400075 | MS.gene74503:intron | 35.0% | |
| CCTTGGATTTCTTGAAAGAA+AGG | - | chr5.2:10400877-10400896 | MS.gene74503:intron | 35.0% | |
| CCTTTCTTTCAAGAAATCCA+AGG | + | chr5.2:10400880-10400899 | None:intergenic | 35.0% | |
| CTAATATGACTTTACATGGC+AGG | - | chr5.2:10400332-10400351 | MS.gene74503:intron | 35.0% | |
| GTTAGATAAGAGAGAAAGAG+AGG | + | chr5.2:10400569-10400588 | None:intergenic | 35.0% | |
| TATCGCAAAAAATAGTGCTC+TGG | - | chr5.2:10399890-10399909 | MS.gene74503:intron | 35.0% | |
| TTCAAGGAAGAGAAAATCCA+AGG | - | chr5.2:10400693-10400712 | MS.gene74503:intron | 35.0% | |
| TTCAGAACTGCAAATCACAA+AGG | + | chr5.2:10400811-10400830 | None:intergenic | 35.0% | |
| TTGTCGATCACAAACAACAA+CGG | + | chr5.2:10399597-10399616 | None:intergenic | 35.0% | |
| ! | AATCTAAGAGTGTGTATTGC+AGG | - | chr5.2:10399142-10399161 | MS.gene74503:intron | 35.0% |
| ! | ATCTAAGAGTGTGTATTGCA+GGG | - | chr5.2:10399143-10399162 | MS.gene74503:intron | 35.0% |
| ! | TTTTGCTGAGATTCAGTGTT+TGG | + | chr5.2:10400472-10400491 | None:intergenic | 35.0% |
| AAATAACAGCTATAGTGGCG+CGG | + | chr5.2:10400027-10400046 | None:intergenic | 40.0% | |
| AAGGCAGTCTTTAAGCATTC+AGG | + | chr5.2:10400861-10400880 | None:intergenic | 40.0% | |
| AAGTAGACGTAATGCTTGGT+TGG | + | chr5.2:10400943-10400962 | None:intergenic | 40.0% | |
| ATTAACTGAGACTGATGAGG+AGG | - | chr5.2:10400648-10400667 | MS.gene74503:intron | 40.0% | |
| CAAAAACCAAACACTGCTGT+GGG | - | chr5.2:10400487-10400506 | MS.gene74503:intron | 40.0% | |
| CATGAGTCCAAAATAAAGCC+AGG | + | chr5.2:10400288-10400307 | None:intergenic | 40.0% | |
| GATAATCTCGGGTTTGAGTA+GGG | - | chr5.2:10399663-10399682 | MS.gene74503:intron | 40.0% | |
| TGAATGCTTAAAGACTGCCT+TGG | - | chr5.2:10400860-10400879 | MS.gene74503:intron | 40.0% | |
| TGAGAGATAGTGCTTATCTC+AGG | - | chr5.2:10400104-10400123 | MS.gene74503:intron | 40.0% | |
| TGGAAAGTAGACGTAATGCT+TGG | + | chr5.2:10400947-10400966 | None:intergenic | 40.0% | |
| TGTTGAAATGCTTGCAGCTA+AGG | - | chr5.2:10400528-10400547 | MS.gene74503:intron | 40.0% | |
| TTACGTCTACTTTCCAGTTC+CGG | - | chr5.2:10400951-10400970 | MS.gene74503:CDS | 40.0% | |
| TTCAAAACAGCAGACGATCT+TGG | + | chr5.2:10400915-10400934 | None:intergenic | 40.0% | |
| ! | ACTTTAGCACTTTTGCATGG+TGG | - | chr5.2:10399549-10399568 | MS.gene74503:CDS | 40.0% |
| ! | AGTTATAGCGTAGCGGAATT+TGG | - | chr5.2:10399459-10399478 | MS.gene74503:CDS | 40.0% |
| ! | GGATTTTCTCTTCCTTGAAG+TGG | + | chr5.2:10400692-10400711 | None:intergenic | 40.0% |
| ! | TGCACTTTAGCACTTTTGCA+TGG | - | chr5.2:10399546-10399565 | MS.gene74503:CDS | 40.0% |
| !! | GCTGGTTTGCTCACAATAAT+AGG | + | chr5.2:10400834-10400853 | None:intergenic | 40.0% |
| AGAAAGAACGTCGGCGAAAA+TGG | - | chr5.2:10400368-10400387 | MS.gene74503:intron | 45.0% | |
| AGAAATCCCACAGCAGTGTT+TGG | + | chr5.2:10400496-10400515 | None:intergenic | 45.0% | |
| AGATGGGTGTAGCTAGCATA+TGG | - | chr5.2:10400174-10400193 | MS.gene74503:intron | 45.0% | |
| GAAAGAACGTCGGCGAAAAT+GGG | - | chr5.2:10400369-10400388 | MS.gene74503:intron | 45.0% | |
| GCAAAAACCAAACACTGCTG+TGG | - | chr5.2:10400486-10400505 | MS.gene74503:intron | 45.0% | |
| GCAGTCTTTAAGCATTCAGG+AGG | + | chr5.2:10400858-10400877 | None:intergenic | 45.0% | |
| GGATAATCTCGGGTTTGAGT+AGG | - | chr5.2:10399662-10399681 | MS.gene74503:intron | 45.0% | |
| GTTCAGCTGTGAATTCCTCA+GGG | + | chr5.2:10399005-10399024 | None:intergenic | 45.0% | |
| TACGTCTACTTTCCAGTTCC+GGG | - | chr5.2:10400952-10400971 | MS.gene74503:CDS | 45.0% | |
| TGAGGAATTCACAGCTGAAC+AGG | - | chr5.2:10399005-10399024 | MS.gene74503:CDS | 45.0% | |
| TGTTCAGCTGTGAATTCCTC+AGG | + | chr5.2:10399006-10399025 | None:intergenic | 45.0% | |
| TTCAGCTGTGAATTCCTCAG+GGG | + | chr5.2:10399004-10399023 | None:intergenic | 45.0% | |
| TTTAAGCATTCAGGAGGAGC+TGG | + | chr5.2:10400852-10400871 | None:intergenic | 45.0% | |
| ! | ATTATGGGCTAACCGCTGAA+TGG | - | chr5.2:10400148-10400167 | MS.gene74503:intron | 45.0% |
| ! | CCAAGGATTCAGGGTTAGTA+GGG | - | chr5.2:10400710-10400729 | MS.gene74503:intron | 45.0% |
| ! | TCCAAGGATTCAGGGTTAGT+AGG | - | chr5.2:10400709-10400728 | MS.gene74503:intron | 45.0% |
| !! | TCATTTCTGGCGTATGATCC+CGG | + | chr5.2:10400973-10400992 | None:intergenic | 45.0% |
| !! | TTAGTAGCTTTGGATGGTCG+AGG | + | chr5.2:10400409-10400428 | None:intergenic | 45.0% |
| !!! | ACGCTCTCCTGGCTTTATTT+TGG | - | chr5.2:10400278-10400297 | MS.gene74503:intron | 45.0% |
| AACCGCTGAATGGCACAGAT+GGG | - | chr5.2:10400158-10400177 | MS.gene74503:intron | 50.0% | |
| CAATCTTGATGTGGCTGCTC+AGG | - | chr5.2:10399415-10399434 | MS.gene74503:intron | 50.0% | |
| CCCTACTAACCCTGAATCCT+TGG | + | chr5.2:10400713-10400732 | None:intergenic | 50.0% | |
| GTTGGCACTACGGTGCTTAA+TGG | - | chr5.2:10399783-10399802 | MS.gene74503:intron | 50.0% | |
| TAACCGCTGAATGGCACAGA+TGG | - | chr5.2:10400157-10400176 | MS.gene74503:intron | 50.0% | |
| CAACGATTCTGATGCCCCTG+AGG | - | chr5.2:10398987-10399006 | MS.gene74503:CDS | 55.0% | |
| GATCCAATTGCACGCTCTCC+TGG | - | chr5.2:10400267-10400286 | MS.gene74503:intron | 55.0% | |
| ! | AAGCCAGGAGAGCGTGCAAT+TGG | + | chr5.2:10400273-10400292 | None:intergenic | 55.0% |
| ! | CACCCATCTGTGCCATTCAG+CGG | + | chr5.2:10400163-10400182 | None:intergenic | 55.0% |
| CTGGCGTATGATCCCGGAAC+TGG | + | chr5.2:10400967-10400986 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 10398979 | 10400992 | 10398979 | ID=MS.gene74503 |
| chr5.2 | mRNA | 10398979 | 10400992 | 10398979 | ID=MS.gene74503.t1;Parent=MS.gene74503 |
| chr5.2 | exon | 10400945 | 10400992 | 10400945 | ID=MS.gene74503.t1.exon1;Parent=MS.gene74503.t1 |
| chr5.2 | CDS | 10400945 | 10400992 | 10400945 | ID=cds.MS.gene74503.t1;Parent=MS.gene74503.t1 |
| chr5.2 | exon | 10400755 | 10400807 | 10400755 | ID=MS.gene74503.t1.exon2;Parent=MS.gene74503.t1 |
| chr5.2 | CDS | 10400755 | 10400807 | 10400755 | ID=cds.MS.gene74503.t1;Parent=MS.gene74503.t1 |
| chr5.2 | exon | 10399417 | 10399617 | 10399417 | ID=MS.gene74503.t1.exon3;Parent=MS.gene74503.t1 |
| chr5.2 | CDS | 10399417 | 10399617 | 10399417 | ID=cds.MS.gene74503.t1;Parent=MS.gene74503.t1 |
| chr5.2 | exon | 10399249 | 10399332 | 10399249 | ID=MS.gene74503.t1.exon4;Parent=MS.gene74503.t1 |
| chr5.2 | CDS | 10399249 | 10399332 | 10399249 | ID=cds.MS.gene74503.t1;Parent=MS.gene74503.t1 |
| chr5.2 | exon | 10398979 | 10399147 | 10398979 | ID=MS.gene74503.t1.exon5;Parent=MS.gene74503.t1 |
| chr5.2 | CDS | 10398979 | 10399147 | 10398979 | ID=cds.MS.gene74503.t1;Parent=MS.gene74503.t1 |
| Gene Sequence |
| Protein sequence |
