AlfalfaGEDB | MS.gene74503

M. sativa cultivar XinJiangDaYe / MS.gene74503

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74503.t1	XP_003611849.1	91.8	184	15	0	1	184	1	184	1.50E-54	222.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74503.t1	G7K9G4	91.8	184	15	0	1	184	1	184	1.1e-54	222.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049207	MS.gene74503	0.800795	1.22E-48	-1.69E-46
MS.gene049825	MS.gene74503	0.828065	1.11E-54	-1.69E-46
MS.gene049873	MS.gene74503	0.838185	3.34E-57	-1.69E-46
MS.gene050277	MS.gene74503	0.816775	4.65E-52	-1.69E-46
MS.gene050303	MS.gene74503	0.877979	4.07E-69	-1.69E-46
MS.gene050355	MS.gene74503	0.800343	1.51E-48	-1.69E-46
MS.gene050885	MS.gene74503	0.809555	1.79E-50	-1.69E-46
MS.gene05134	MS.gene74503	0.81619	6.28E-52	-1.69E-46
MS.gene051451	MS.gene74503	0.801433	9.03E-49	-1.69E-46
MS.gene051700	MS.gene74503	0.809091	2.25E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74503.t1	MTR_5g018550	95.652	184	8	0	1	184	1	184	3.83e-124	347

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74503.t1	AT4G37090	44.974	189	92	4	1	184	1	182	4.71e-33	116
MS.gene74503.t1	AT4G37090	45.946	185	86	5	1	180	1	176	1.68e-26	100

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Find 37 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGAAAATCCAAGGATTC+AGG	0.267478	5.2:-10399249	MS.gene74503:CDS
AAGCATTTCAACAATGCTTT+TGG	0.238659	5.2:+10399431	None:intergenic
AAGGCAGTCTTTAAGCATTC+AGG	0.411790	5.2:+10399091	None:intergenic
AAGTAGACGTAATGCTTGGT+TGG	0.572908	5.2:+10399009	None:intergenic
AATTAAAGGCTACCACTTCA+AGG	0.462256	5.2:-10399272	MS.gene74503:CDS
AGAAAGAACGTCGGCGAAAA+TGG	0.201521	5.2:-10399581	MS.gene74503:CDS
AGAAATCCCACAGCAGTGTT+TGG	0.406449	5.2:+10399456	None:intergenic
AGAGAAAATCCAAGGATTCA+GGG	0.497993	5.2:-10399248	MS.gene74503:intron
AGAGATTCGAAAGATTAAAA+AGG	0.343332	5.2:-10400768	MS.gene74503:CDS
ATATTGAAGAGAAAGAACGT+CGG	0.783151	5.2:-10399590	MS.gene74503:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTGAAGAGAAAGAACGT+CGG	-	chr5.2:10400359-10400378	MS.gene74503:intron	30.0%
CAAAATCAGGTTTAGTTATG+AGG	-	chr5.2:10399208-10399227	MS.gene74503:intron	30.0%
CCAAAGCTACTAAAAAATCT+AGG	-	chr5.2:10400416-10400435	MS.gene74503:intron	30.0%
GATATTGATCAATCTTGATG+TGG	-	chr5.2:10399406-10399425	MS.gene74503:intron	30.0%
TAATATGACTTTACATGGCA+GGG	-	chr5.2:10400333-10400352	MS.gene74503:intron	30.0%
TGAGGAGGAAGATAAATTAA+AGG	-	chr5.2:10400663-10400682	MS.gene74503:intron	30.0%
TGCAATGAGTAAAGTAACTA+GGG	-	chr5.2:10399282-10399301	MS.gene74503:CDS	30.0%
TGCAGTATAAGAGAGAATAA+AGG	+	chr5.2:10400233-10400252	None:intergenic	30.0%
TTATTAATTGGTTGGCACTA+CGG	-	chr5.2:10399773-10399792	MS.gene74503:intron	30.0%
TTGCAATGAGTAAAGTAACT+AGG	-	chr5.2:10399281-10399300	MS.gene74503:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	10398979	10400992	10398979	ID=MS.gene74503
chr5.2	mRNA	10398979	10400992	10398979	ID=MS.gene74503.t1;Parent=MS.gene74503
chr5.2	exon	10400945	10400992	10400945	ID=MS.gene74503.t1.exon1;Parent=MS.gene74503.t1
chr5.2	CDS	10400945	10400992	10400945	ID=cds.MS.gene74503.t1;Parent=MS.gene74503.t1
chr5.2	exon	10400755	10400807	10400755	ID=MS.gene74503.t1.exon2;Parent=MS.gene74503.t1
chr5.2	CDS	10400755	10400807	10400755	ID=cds.MS.gene74503.t1;Parent=MS.gene74503.t1
chr5.2	exon	10399417	10399617	10399417	ID=MS.gene74503.t1.exon3;Parent=MS.gene74503.t1
chr5.2	CDS	10399417	10399617	10399417	ID=cds.MS.gene74503.t1;Parent=MS.gene74503.t1
chr5.2	exon	10399249	10399332	10399249	ID=MS.gene74503.t1.exon4;Parent=MS.gene74503.t1
chr5.2	CDS	10399249	10399332	10399249	ID=cds.MS.gene74503.t1;Parent=MS.gene74503.t1
chr5.2	exon	10398979	10399147	10398979	ID=MS.gene74503.t1.exon5;Parent=MS.gene74503.t1
chr5.2	CDS	10398979	10399147	10398979	ID=cds.MS.gene74503.t1;Parent=MS.gene74503.t1

Gene Sequence

>MS.gene74503

ATGTCAGACAACGATTCTGATGCCCCTGAGGAATTCACAGCTGAACAGGTTTCTTCAGTTCATTTTCCAATTCCAATTCCAATTTATTTGTTTCAATGAATCAAATCGAATTTACAATCTTTAATTTGTTTTGTTTTTGAGGTTATTTTAAGTATGAATACTTAATCTAAGAGTGTGTATTGCAGGGTATTCAGCTAGACGAAGAGATTCGAAAGATTAAAAAGGAAAACAAAATCAGGTTTAGTTATGAGGTTAATTTAAGTTATTGGAAGTAAAATTTGAGAATTTCTGTGATGTTGTTTTTGCAATGAGTAAAGTAACTAGGGTTGTTTAAAAATTCATCAATACAAATTACTAAGTTTTCAATCTTATTTTTGTTGGGGTACTTTATAATTCAGAGAATTTTTAGCTGTACTGCAGTCACTAAGATATTGATCAATCTTGATGTGGCTGCTCAGGTCTTGCAGTGTTTTATATTGCAGTTATAGCGTAGCGGAATTTGGATAAACTGCTACTGTTATGCCACACACTATTCAGTACAAAATGTTGTTAATTTGCTGATATTGTTGCACTTTAGCACTTTTGCATGGTGGAATTTTAACAGTCTGCTATTTTCCGTTGTTGTTTGTGATCGACAACATTAGTTACGTTGGCAGAACTTTTTTTAACATTGATAGATTATTGGATAATCTCGGGTTTGAGTAGGGATAGAAAATGCTAACTGAGTGAATTCACTCATTCATAAACATTGTTTTATAGAAAGATGTGACTATGTGAGTGTCTCATTTTGCTGATTATTAATTGGTTGGCACTACGGTGCTTAATGGTTTTTTAAGAATTTTGATAAAAGATTTGGTAAATTTGAACAATATGAGATCTGATCAGTGAATATCTTAGTGTTGTCAATTGCATATCGCAAAAAATAGTGCTCTGGTCAAGTTCTCTCAACTGTGCTATAGCGCTGCTAGAGTCACTATTTCACAAATATTCGTACTAAATAGCATATTGAAGAACGATAGTGATTTGTTCAAATTCTGCTATGCTACCGCGCCACTATAGCTGTTATTTAAATTTTAACAACACTGGAACATATGAAAAGGTTTTTCATCAAAAACATTCATGAGATGAGAGATAGTGCTTATCTCAGGATGTCGTTAGTTTCATAAATTATTATGGGCTAACCGCTGAATGGCACAGATGGGTGTAGCTAGCATATGGCTTTTGATCTGTTGTTTTGCAAATAGCAACATTCCTTTATTCTCTCTTATACTGCATAATTATGGGTTAAGATCCAATTGCACGCTCTCCTGGCTTTATTTTGGACTCATGCATAACAACCACATATAGTGATGTCTAATATGACTTTACATGGCAGGGTTAATATTGAAGAGAAAGAACGTCGGCGAAAATGGGCTCAAAATTTAACACCTCGACCATCCAAAGCTACTAAAAAATCTAGGGACACATCAAACACTGAATCTGAGCAAGAACCAAACACTGAATCTCAGCAAAAACCAAACACTGCTGTGGGATTTCTTCCCAAAAGCATTGTTGAAATGCTTGCAGCTAAGGAGAAGTAATGATTGGCCTCTCTTTCTCTCTTATCTAACTACGCTTGATTCTTTAGATAAATCTCTAAGAGGCTATAATCTGTTTGTAGAAAAAATTTATTAACTGAGACTGATGAGGAGGAAGATAAATTAAAGGCTACCACTTCAAGGAAGAGAAAATCCAAGGATTCAGGGTTAGTAGGGTTTTCATCCTATCTATTTCTATGCAATTATAATTATGCTTTCATGCTGCTTTTAATCCTGTAGTTATATATATTTCCTTTGTGATTTGCAGTTCTGAACCTATTATTGTGAGCAAACCAGCTCCTCCTGAATGCTTAAAGACTGCCTTGGATTTCTTGAAAGAAAGGAAAATGTCAGTTCCAAGATCGTCTGCTGTTTTGAAGAATTCCAACCAAGCATTACGTCTACTTTCCAGTTCCGGGATCATACGCCAGAAATGA

Protein sequence

>MS.gene74503.t1

MSDNDSDAPEEFTAEQGIQLDEEIRKIKKENKIRVNIEEKERRRKWAQNLTPRPSKATKKSRDTSNTESEQEPNTESQQKPNTAVGFLPKSIVEMLAAKEKKNLLTETDEEEDKLKATTSRKRKSKDSGSEPIIVSKPAPPECLKTALDFLKERKMSVPRSSAVLKNSNQALRLLSSSGIIRQK