Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76492.t1 | GAU18552.1 | 93.5 | 217 | 14 | 0 | 64 | 280 | 101 | 317 | 1.90E-114 | 422.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76492.t1 | A0A2Z6LL45 | 93.5 | 217 | 14 | 0 | 64 | 280 | 101 | 317 | 1.4e-114 | 422.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene76492 | 0.823068 | 1.69E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene76492 | 0.802703 | 4.95E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene76492 | 0.856912 | 2.33E-62 | -1.69E-46 |
| MS.gene049320 | MS.gene76492 | 0.847588 | 1.05E-59 | -1.69E-46 |
| MS.gene04939 | MS.gene76492 | 0.809367 | 1.96E-50 | -1.69E-46 |
| MS.gene049627 | MS.gene76492 | 0.817583 | 3.06E-52 | -1.69E-46 |
| MS.gene05010 | MS.gene76492 | 0.814425 | 1.55E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene76492 | 0.871136 | 8.60E-67 | -1.69E-46 |
| MS.gene050165 | MS.gene76492 | 0.874693 | 5.53E-68 | -1.69E-46 |
| MS.gene050333 | MS.gene76492 | 0.861062 | 1.34E-63 | -1.69E-46 |
| MS.gene050504 | MS.gene76492 | 0.868602 | 5.78E-66 | -1.69E-46 |
| MS.gene050518 | MS.gene76492 | 0.845632 | 3.60E-59 | -1.69E-46 |
| MS.gene050577 | MS.gene76492 | 0.81093 | 9.02E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene76492 | 0.877873 | 4.43E-69 | -1.69E-46 |
| MS.gene050675 | MS.gene76492 | 0.818936 | 1.51E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene76492 | 0.844824 | 5.95E-59 | -1.69E-46 |
| MS.gene050876 | MS.gene76492 | 0.842866 | 1.99E-58 | -1.69E-46 |
| MS.gene05087 | MS.gene76492 | 0.809862 | 1.53E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene76492 | 0.8606 | 1.85E-63 | -1.69E-46 |
| MS.gene051317 | MS.gene76492 | 0.863375 | 2.60E-64 | -1.69E-46 |
| MS.gene051810 | MS.gene76492 | 0.845092 | 5.04E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene76492 | 0.818355 | 2.05E-52 | -1.69E-46 |
| MS.gene053284 | MS.gene76492 | 0.813857 | 2.07E-51 | -1.69E-46 |
| MS.gene053285 | MS.gene76492 | 0.803011 | 4.27E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene76492 | 0.825723 | 4.01E-54 | -1.69E-46 |
| MS.gene054374 | MS.gene76492 | 0.810888 | 9.22E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene76492 | 0.818563 | 1.84E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene76492 | 0.859045 | 5.43E-63 | -1.69E-46 |
| MS.gene05470 | MS.gene76492 | 0.81216 | 4.88E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene76492 | 0.854742 | 1.01E-61 | -1.69E-46 |
| MS.gene055362 | MS.gene76492 | 0.843711 | 1.18E-58 | -1.69E-46 |
| MS.gene055502 | MS.gene76492 | 0.838509 | 2.76E-57 | -1.69E-46 |
| MS.gene055577 | MS.gene76492 | 0.829736 | 4.36E-55 | -1.69E-46 |
| MS.gene055634 | MS.gene76492 | 0.803143 | 4.01E-49 | -1.69E-46 |
| MS.gene055638 | MS.gene76492 | 0.819315 | 1.24E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene76492 | 0.825323 | 4.99E-54 | -1.69E-46 |
| MS.gene055751 | MS.gene76492 | 0.830073 | 3.61E-55 | -1.69E-46 |
| MS.gene055776 | MS.gene76492 | 0.817812 | 2.72E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene76492 | 0.803319 | 3.69E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene76492 | 0.809026 | 2.32E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene76492 | 0.821735 | 3.45E-53 | -1.69E-46 |
| MS.gene056610 | MS.gene76492 | 0.812685 | 3.74E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene76492 | 0.832745 | 7.93E-56 | -1.69E-46 |
| MS.gene056692 | MS.gene76492 | 0.83604 | 1.18E-56 | -1.69E-46 |
| MS.gene056898 | MS.gene76492 | 0.809758 | 1.62E-50 | -1.69E-46 |
| MS.gene057986 | MS.gene76492 | 0.845418 | 4.11E-59 | -1.69E-46 |
| MS.gene058419 | MS.gene76492 | 0.834924 | 2.26E-56 | -1.69E-46 |
| MS.gene058544 | MS.gene76492 | 0.816263 | 6.05E-52 | -1.69E-46 |
| MS.gene058773 | MS.gene76492 | 0.859533 | 3.87E-63 | -1.69E-46 |
| MS.gene059022 | MS.gene76492 | 0.858088 | 1.05E-62 | -1.69E-46 |
| MS.gene059023 | MS.gene76492 | 0.829385 | 5.30E-55 | -1.69E-46 |
| MS.gene059079 | MS.gene76492 | 0.821476 | 3.96E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene76492 | 0.867699 | 1.13E-65 | -1.69E-46 |
| MS.gene059718 | MS.gene76492 | 0.823979 | 1.03E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene76492 | 0.811468 | 6.90E-51 | -1.69E-46 |
| MS.gene060337 | MS.gene76492 | -0.805031 | 1.62E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene76492 | 0.827344 | 1.65E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene76492 | 0.840446 | 8.65E-58 | -1.69E-46 |
| MS.gene06077 | MS.gene76492 | 0.830684 | 2.56E-55 | -1.69E-46 |
| MS.gene06092 | MS.gene76492 | 0.808331 | 3.26E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene76492 | 0.830966 | 2.18E-55 | -1.69E-46 |
| MS.gene061150 | MS.gene76492 | 0.866234 | 3.31E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76492.t1 | MTR_3g082680 | 88.732 | 284 | 23 | 3 | 1 | 280 | 46 | 324 | 6.41e-173 | 480 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76492.t1 | AT2G04360 | 60.440 | 273 | 104 | 2 | 8 | 280 | 49 | 317 | 2.09e-120 | 347 |
| MS.gene76492.t1 | AT2G04360 | 52.548 | 314 | 104 | 3 | 8 | 280 | 49 | 358 | 2.92e-112 | 328 |
| MS.gene76492.t1 | AT2G04360 | 68.116 | 207 | 63 | 1 | 74 | 280 | 17 | 220 | 3.65e-103 | 300 |
| MS.gene76492.t1 | AT2G04360 | 56.422 | 218 | 90 | 3 | 8 | 224 | 49 | 262 | 2.68e-85 | 256 |
Find 65 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAACACTGGCACCATTT+TGG | 0.187033 | 2.3:-2294252 | MS.gene76492:CDS |
| ATATTACCGGTGTCTGGTTT+GGG | 0.250210 | 2.3:+2295878 | None:intergenic |
| TGTTTCTGAATGGTATATTA+TGG | 0.293647 | 2.3:-2295695 | MS.gene76492:CDS |
| ATGATATGACTGCTAGAAAA+TGG | 0.306456 | 2.3:-2294222 | MS.gene76492:intron |
| AGTTTCATTGATACCATTGC+TGG | 0.307701 | 2.3:-2294067 | MS.gene76492:CDS |
| AATCAGATATTGCTTGCTTC+GGG | 0.314268 | 2.3:-2294607 | MS.gene76492:intron |
| GTTTCTGAATGGTATATTAT+GGG | 0.317642 | 2.3:-2295694 | MS.gene76492:CDS |
| TATTATGGGTTTGTGGCCTT+TGG | 0.341981 | 2.3:-2295680 | MS.gene76492:CDS |
| ACAGGTTTGACAAAGGTTCT+TGG | 0.347641 | 2.3:-2294098 | MS.gene76492:intron |
| ATATCATTGTAAACCCAAAA+TGG | 0.351254 | 2.3:+2294238 | None:intergenic |
| TTAAGTTGTGTTTCTTCAAC+AGG | 0.358500 | 2.3:+2294870 | None:intergenic |
| TATATTACCGGTGTCTGGTT+TGG | 0.369304 | 2.3:+2295877 | None:intergenic |
| GGTTTCCATAGCACAAAATA+AGG | 0.372685 | 2.3:+2294903 | None:intergenic |
| ATTTGCTTTCCCTGAAGTAC+TGG | 0.383210 | 2.3:+2294527 | None:intergenic |
| TTGCTGCTACACCATCATTT+CGG | 0.385003 | 2.3:-2296059 | MS.gene76492:CDS |
| AGCAATGGTATCAATGAAAC+TGG | 0.385121 | 2.3:+2294069 | None:intergenic |
| ATAATTTACGCTAGTTTAGC+CGG | 0.429459 | 2.3:-2294574 | MS.gene76492:CDS |
| TTGAATTTGAAAGGAGATGA+TGG | 0.440690 | 2.3:-2295739 | MS.gene76492:CDS |
| GGTAACTTGACTCTCTTTGT+TGG | 0.445634 | 2.3:+2296005 | None:intergenic |
| TAGTATATATTACCGGTGTC+TGG | 0.446627 | 2.3:+2295872 | None:intergenic |
| ATATTGCTTGCTTCGGGGAT+AGG | 0.448524 | 2.3:-2294601 | MS.gene76492:CDS |
| CTCCACAACACTGCTGTTGT+TGG | 0.454329 | 2.3:+2295984 | None:intergenic |
| GAATCAGATATTGCTTGCTT+CGG | 0.458917 | 2.3:-2294608 | MS.gene76492:intron |
| AATGGTATATTATGGGTTTG+TGG | 0.460874 | 2.3:-2295687 | MS.gene76492:CDS |
| TCTTCAACAGGAGGCGGTGG+AGG | 0.472797 | 2.3:+2294882 | None:intergenic |
| GTTTCATTGATACCATTGCT+GGG | 0.486547 | 2.3:-2294066 | MS.gene76492:CDS |
| CAACAGCAGTGTTGTGGAGG+AGG | 0.487609 | 2.3:-2295980 | MS.gene76492:CDS |
| TTCTTTCCACACATCTTCCC+CGG | 0.488058 | 2.3:+2294555 | None:intergenic |
| TGGATTCACTCAGACTCAAC+AGG | 0.489510 | 2.3:+2293985 | None:intergenic |
| CTACTCTTTCTCCGAAATGA+TGG | 0.494266 | 2.3:+2296048 | None:intergenic |
| GCAGACAGGAAGGGCCATAC+AGG | 0.516734 | 2.3:+2294957 | None:intergenic |
| TAATTTACGCTAGTTTAGCC+GGG | 0.521606 | 2.3:-2294573 | MS.gene76492:CDS |
| TGAGAGTAAAGTAAAATCAA+TGG | 0.530434 | 2.3:+2294270 | None:intergenic |
| AGGAGTTTGTGCAATGGCAG+AGG | 0.533565 | 2.3:+2294005 | None:intergenic |
| AGCATGCTGTTACTTCCCAC+TGG | 0.534575 | 2.3:-2295652 | MS.gene76492:CDS |
| TGTTACTTCCCACTGGAAGA+AGG | 0.536692 | 2.3:-2295645 | MS.gene76492:intron |
| CTGCTTTATACATTCTCCTA+CGG | 0.539301 | 2.3:-2294041 | MS.gene76492:CDS |
| ATCAAGTGCTTGTTTCTGAA+TGG | 0.542025 | 2.3:-2295705 | MS.gene76492:CDS |
| GTTTCTTCAACAGGAGGCGG+TGG | 0.547408 | 2.3:+2294879 | None:intergenic |
| CGTAGGAGAATGTATAAAGC+AGG | 0.556966 | 2.3:+2294042 | None:intergenic |
| TACCAACAACAGCAGTGTTG+TGG | 0.561620 | 2.3:-2295986 | MS.gene76492:CDS |
| AGGTTGATAGTGAGGGCCGT+AGG | 0.564890 | 2.3:+2294025 | None:intergenic |
| TGTGTTTCTTCAACAGGAGG+CGG | 0.566833 | 2.3:+2294876 | None:intergenic |
| TAAAATCAATGGACATAACA+TGG | 0.590376 | 2.3:+2294281 | None:intergenic |
| TATAAAGCAGGCCCCAGCAA+TGG | 0.590930 | 2.3:+2294054 | None:intergenic |
| AGCAGTGTTGTGGAGGAGGA+AGG | 0.592189 | 2.3:-2295976 | MS.gene76492:CDS |
| GGGAAATACCTTCTTCCAGT+GGG | 0.602141 | 2.3:+2295637 | None:intergenic |
| AGTTGTGTTTCTTCAACAGG+AGG | 0.602142 | 2.3:+2294873 | None:intergenic |
| TTTCATTGATACCATTGCTG+GGG | 0.604297 | 2.3:-2294065 | MS.gene76492:CDS |
| TATTACCGGTGTCTGGTTTG+GGG | 0.608819 | 2.3:+2295879 | None:intergenic |
| TCTCTCCCCAAACCAGACAC+CGG | 0.613768 | 2.3:-2295884 | MS.gene76492:intron |
| GTTTAGCCGGGGAAGATGTG+TGG | 0.614056 | 2.3:-2294561 | MS.gene76492:CDS |
| TCAATATACAGGTTTGACAA+AGG | 0.614796 | 2.3:-2294105 | MS.gene76492:intron |
| AGGGAAATACCTTCTTCCAG+TGG | 0.616603 | 2.3:+2295636 | None:intergenic |
| ATCAGATATTGCTTGCTTCG+GGG | 0.617901 | 2.3:-2294606 | MS.gene76492:intron |
| CAACAACAGCAGTGTTGTGG+AGG | 0.624485 | 2.3:-2295983 | MS.gene76492:CDS |
| AACAGCATGCTATATACCAA+AGG | 0.624686 | 2.3:+2295664 | None:intergenic |
| AATGGCAGAGGTTGATAGTG+AGG | 0.627029 | 2.3:+2294017 | None:intergenic |
| ATGGCAGAGGTTGATAGTGA+GGG | 0.631651 | 2.3:+2294018 | None:intergenic |
| TGATGGTGTAGCAGCAACAG+AGG | 0.642844 | 2.3:+2296065 | None:intergenic |
| CTCAACAGGAGTTTGTGCAA+TGG | 0.646011 | 2.3:+2293999 | None:intergenic |
| GGAATCGAAAGTCACTGCAA+CGG | 0.649464 | 2.3:-2294826 | MS.gene76492:intron |
| AAGAAACACAACTTAAAACA+TGG | 0.655934 | 2.3:-2294863 | MS.gene76492:CDS |
| GATGGTGTAGCAGCAACAGA+GGG | 0.657144 | 2.3:+2296066 | None:intergenic |
| AATTTACGCTAGTTTAGCCG+GGG | 0.690077 | 2.3:-2294572 | MS.gene76492:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATATAGTATGATA+GGG | + | chr2.3:2295933-2295952 | None:intergenic | 15.0% |
| !!! | TATCTTTTATATAGTATGAT+AGG | + | chr2.3:2295934-2295953 | None:intergenic | 15.0% |
| !! | AATCATCAAAAATTTAAGCA+CGG | - | chr2.3:2294803-2294822 | MS.gene76492:intron | 20.0% |
| !! | AGCTTAAAATAATGAATACA+AGG | + | chr2.3:2295614-2295633 | None:intergenic | 20.0% |
| !! | GATAAGATAGTATATATTAC+CGG | + | chr2.3:2294209-2294228 | None:intergenic | 20.0% |
| !! | TAAATAATAGTATCCATGAT+TGG | - | chr2.3:2295325-2295344 | MS.gene76492:intron | 20.0% |
| !! | TAGTAAATTGAGTGAATAAT+AGG | + | chr2.3:2294482-2294501 | None:intergenic | 20.0% |
| !! | TTCGATTCCAAAAAATTTAA+TGG | + | chr2.3:2295234-2295253 | None:intergenic | 20.0% |
| !!! | AAAAAGCTTTTGAATTTGAA+AGG | - | chr2.3:2294323-2294342 | MS.gene76492:intron | 20.0% |
| !!! | AATTTTACTCTTTCTCTTAT+GGG | - | chr2.3:2294139-2294158 | MS.gene76492:intron | 20.0% |
| !!! | TTAAAAATATTCAGGTTTTC+TGG | + | chr2.3:2295411-2295430 | None:intergenic | 20.0% |
| !!! | TTTTCATAAGTTATCCTAAA+AGG | - | chr2.3:2294593-2294612 | MS.gene76492:CDS | 20.0% |
| ! | AAGAAACACAACTTAAAACA+TGG | - | chr2.3:2295208-2295227 | MS.gene76492:intron | 25.0% |
| ! | AAGTGAATCCTATATGAAAA+AGG | + | chr2.3:2294458-2294477 | None:intergenic | 25.0% |
| ! | AGTGAATCCTATATGAAAAA+GGG | + | chr2.3:2294457-2294476 | None:intergenic | 25.0% |
| ! | ATAATTCAATCAACAGTTAC+TGG | - | chr2.3:2295678-2295697 | MS.gene76492:CDS | 25.0% |
| ! | ATATCATTGTAAACCCAAAA+TGG | + | chr2.3:2295836-2295855 | None:intergenic | 25.0% |
| ! | ATATTATAGCTAGCTAAGTT+TGG | + | chr2.3:2294733-2294752 | None:intergenic | 25.0% |
| ! | GTTTCTGAATGGTATATTAT+GGG | - | chr2.3:2294377-2294396 | MS.gene76492:intron | 25.0% |
| ! | TAAAATCAATGGACATAACA+TGG | + | chr2.3:2295793-2295812 | None:intergenic | 25.0% |
| ! | TGAGAGTAAAGTAAAATCAA+TGG | + | chr2.3:2295804-2295823 | None:intergenic | 25.0% |
| !! | CAATTTTACTCTTTCTCTTA+TGG | - | chr2.3:2294138-2294157 | MS.gene76492:intron | 25.0% |
| !! | CTAGTTATAATAAGCCTTTT+AGG | + | chr2.3:2294610-2294629 | None:intergenic | 25.0% |
| !! | TGTTTCTGAATGGTATATTA+TGG | - | chr2.3:2294376-2294395 | MS.gene76492:intron | 25.0% |
| !!! | AACATGGCCATTAAATTTTT+TGG | - | chr2.3:2295224-2295243 | MS.gene76492:intron | 25.0% |
| !!! | TTATTAATTCTGAAATGCCA+GGG | + | chr2.3:2294954-2294973 | None:intergenic | 25.0% |
| AAAACTCTACAGAATGTAAG+AGG | + | chr2.3:2294923-2294942 | None:intergenic | 30.0% | |
| AACAACATTGTTTACATAGC+AGG | + | chr2.3:2295023-2295042 | None:intergenic | 30.0% | |
| AATGGTATATTATGGGTTTG+TGG | - | chr2.3:2294384-2294403 | MS.gene76492:intron | 30.0% | |
| AATTATAATACTATCCTGCG+TGG | + | chr2.3:2294895-2294914 | None:intergenic | 30.0% | |
| ACAACATTGTTTACATAGCA+GGG | + | chr2.3:2295022-2295041 | None:intergenic | 30.0% | |
| ACAACCTAGTTAGTTACATT+AGG | - | chr2.3:2295723-2295742 | MS.gene76492:CDS | 30.0% | |
| ACAACTTTACAATGTTAGGT+TGG | + | chr2.3:2295284-2295303 | None:intergenic | 30.0% | |
| ACGACGAGTTAAAAATATTC+AGG | + | chr2.3:2295419-2295438 | None:intergenic | 30.0% | |
| ATGAACAAAATCACCAATCA+TGG | + | chr2.3:2295341-2295360 | None:intergenic | 30.0% | |
| ATGATATGACTGCTAGAAAA+TGG | - | chr2.3:2295849-2295868 | MS.gene76492:intron | 30.0% | |
| CAACTTTACAATGTTAGGTT+GGG | + | chr2.3:2295283-2295302 | None:intergenic | 30.0% | |
| CTTCTCTAATATTGTTACGA+TGG | - | chr2.3:2295649-2295668 | MS.gene76492:CDS | 30.0% | |
| TACAACAGGAGGTTATTATT+AGG | + | chr2.3:2295371-2295390 | None:intergenic | 30.0% | |
| TATATAGTATGATAGGGACT+AGG | + | chr2.3:2295927-2295946 | None:intergenic | 30.0% | |
| TCAATATACAGGTTTGACAA+AGG | - | chr2.3:2295966-2295985 | MS.gene76492:CDS | 30.0% | |
| TGCAACAACTTTACAATGTT+AGG | + | chr2.3:2295288-2295307 | None:intergenic | 30.0% | |
| TTGAATTTGAAAGGAGATGA+TGG | - | chr2.3:2294332-2294351 | MS.gene76492:intron | 30.0% | |
| ! | AACTCAGCTTTTCATATTGT+TGG | - | chr2.3:2295578-2295597 | MS.gene76492:intron | 30.0% |
| ! | AAGAATTTTTCCAGTACTTC+AGG | - | chr2.3:2295534-2295553 | MS.gene76492:intron | 30.0% |
| ! | AGAATTTTTCCAGTACTTCA+GGG | - | chr2.3:2295535-2295554 | MS.gene76492:intron | 30.0% |
| ! | ATAATTTACGCTAGTTTAGC+CGG | - | chr2.3:2295497-2295516 | MS.gene76492:intron | 30.0% |
| ! | TAACATTCGACCATTGTTTT+AGG | - | chr2.3:2294851-2294870 | MS.gene76492:CDS | 30.0% |
| ! | TTAAGTTGTGTTTCTTCAAC+AGG | + | chr2.3:2295204-2295223 | None:intergenic | 30.0% |
| ! | TTTTACTTTACTCTCAACAC+TGG | - | chr2.3:2295808-2295827 | MS.gene76492:intron | 30.0% |
| !! | AACATTCGACCATTGTTTTA+GGG | - | chr2.3:2294852-2294871 | MS.gene76492:CDS | 30.0% |
| !! | AGTTATTTCTGTAGTGAAAG+AGG | - | chr2.3:2294554-2294573 | MS.gene76492:CDS | 30.0% |
| !! | ATTTTAGCAAGTTGCAGATT+TGG | + | chr2.3:2295749-2295768 | None:intergenic | 30.0% |
| !! | GGTATTTCCCTTTTTCATAT+AGG | - | chr2.3:2294447-2294466 | MS.gene76492:intron | 30.0% |
| !! | GTTATTAATTCTGAAATGCC+AGG | + | chr2.3:2294955-2294974 | None:intergenic | 30.0% |
| !!! | TAGAGTTTTAACTTATACCC+TGG | - | chr2.3:2294934-2294953 | MS.gene76492:CDS | 30.0% |
| !!! | TGACGATTTAGTTTTTGCAT+TGG | - | chr2.3:2295056-2295075 | MS.gene76492:intron | 30.0% |
| !!! | TTCTTCCTTATTTTGTGCTA+TGG | - | chr2.3:2295163-2295182 | MS.gene76492:intron | 30.0% |
| AAAAATGAAGCAGACAGGAA+GGG | + | chr2.3:2295126-2295145 | None:intergenic | 35.0% | |
| AACAGCATGCTATATACCAA+AGG | + | chr2.3:2294410-2294429 | None:intergenic | 35.0% | |
| AATCAGATATTGCTTGCTTC+GGG | - | chr2.3:2295464-2295483 | MS.gene76492:intron | 35.0% | |
| AATGGTCGAATGTTACATCT+TGG | + | chr2.3:2294846-2294865 | None:intergenic | 35.0% | |
| AGCAATGGTATCAATGAAAC+TGG | + | chr2.3:2296005-2296024 | None:intergenic | 35.0% | |
| AGTAAGAATGTGACTACAAC+AGG | + | chr2.3:2295385-2295404 | None:intergenic | 35.0% | |
| AGTTTCATTGATACCATTGC+TGG | - | chr2.3:2296004-2296023 | MS.gene76492:CDS | 35.0% | |
| CAACAACTCTGTTACAAAGA+TGG | + | chr2.3:2294514-2294533 | None:intergenic | 35.0% | |
| CTGCTTTATACATTCTCCTA+CGG | - | chr2.3:2296030-2296049 | MS.gene76492:CDS | 35.0% | |
| GAATCAGATATTGCTTGCTT+CGG | - | chr2.3:2295463-2295482 | MS.gene76492:intron | 35.0% | |
| GGTTTCCATAGCACAAAATA+AGG | + | chr2.3:2295171-2295190 | None:intergenic | 35.0% | |
| GTAATGCTCGTTCAATATAC+AGG | - | chr2.3:2295955-2295974 | MS.gene76492:CDS | 35.0% | |
| GTTTCATTGATACCATTGCT+GGG | - | chr2.3:2296005-2296024 | MS.gene76492:CDS | 35.0% | |
| TAGTATATATTACCGGTGTC+TGG | + | chr2.3:2294202-2294221 | None:intergenic | 35.0% | |
| TTGAACTGACCCTAAAACAA+TGG | + | chr2.3:2294864-2294883 | None:intergenic | 35.0% | |
| TTGGCCTAATGTAACTAACT+AGG | + | chr2.3:2295730-2295749 | None:intergenic | 35.0% | |
| TTTCATTGATACCATTGCTG+GGG | - | chr2.3:2296006-2296025 | MS.gene76492:CDS | 35.0% | |
| ! | TAATTTACGCTAGTTTAGCC+GGG | - | chr2.3:2295498-2295517 | MS.gene76492:intron | 35.0% |
| !! | ATCAAGTGCTTGTTTCTGAA+TGG | - | chr2.3:2294366-2294385 | MS.gene76492:intron | 35.0% |
| !! | ATCTGCAACTTGCTAAAATC+TGG | - | chr2.3:2295750-2295769 | MS.gene76492:CDS | 35.0% |
| !! | TTCCTGTCTGCTTCATTTTT+CGG | - | chr2.3:2295126-2295145 | MS.gene76492:intron | 35.0% |
| AAGAATGTGACTACAACAGG+AGG | + | chr2.3:2295382-2295401 | None:intergenic | 40.0% | |
| AATGATTCTGTCTGTAGTCG+AGG | - | chr2.3:2294285-2294304 | MS.gene76492:CDS | 40.0% | |
| ACAGGTTTGACAAAGGTTCT+TGG | - | chr2.3:2295973-2295992 | MS.gene76492:CDS | 40.0% | |
| ACCAATGTGATCGAAACGAA+GGG | + | chr2.3:2294782-2294801 | None:intergenic | 40.0% | |
| AGGAGGAAGGAAAAAGTGAT+TGG | - | chr2.3:2294108-2294127 | MS.gene76492:intron | 40.0% | |
| AGTTGTGTTTCTTCAACAGG+AGG | + | chr2.3:2295201-2295220 | None:intergenic | 40.0% | |
| ATCAGATATTGCTTGCTTCG+GGG | - | chr2.3:2295465-2295484 | MS.gene76492:intron | 40.0% | |
| ATGATTCTGTCTGTAGTCGA+GGG | - | chr2.3:2294286-2294305 | MS.gene76492:CDS | 40.0% | |
| ATTCCCACAAAGCTCAAAGT+AGG | + | chr2.3:2294983-2295002 | None:intergenic | 40.0% | |
| ATTTGCTTTCCCTGAAGTAC+TGG | + | chr2.3:2295547-2295566 | None:intergenic | 40.0% | |
| CAAAAAGCAGTGTTCCTGTA+TGG | - | chr2.3:2295100-2295119 | MS.gene76492:intron | 40.0% | |
| CATTGTTTACATAGCAGGGT+CGG | + | chr2.3:2295018-2295037 | None:intergenic | 40.0% | |
| CGTAGGAGAATGTATAAAGC+AGG | + | chr2.3:2296032-2296051 | None:intergenic | 40.0% | |
| CTACTCTTTCTCCGAAATGA+TGG | + | chr2.3:2294026-2294045 | None:intergenic | 40.0% | |
| GAAAAATGAAGCAGACAGGA+AGG | + | chr2.3:2295127-2295146 | None:intergenic | 40.0% | |
| GGTAACTTGACTCTCTTTGT+TGG | + | chr2.3:2294069-2294088 | None:intergenic | 40.0% | |
| TAACTAGGTTGTAGCAGACT+AGG | + | chr2.3:2295715-2295734 | None:intergenic | 40.0% | |
| TACCAATGTGATCGAAACGA+AGG | + | chr2.3:2294783-2294802 | None:intergenic | 40.0% | |
| TATATTACCGGTGTCTGGTT+TGG | + | chr2.3:2294197-2294216 | None:intergenic | 40.0% | |
| TATTATGGGTTTGTGGCCTT+TGG | - | chr2.3:2294391-2294410 | MS.gene76492:intron | 40.0% | |
| TCAATCAACAGTTACTGGAC+TGG | - | chr2.3:2295683-2295702 | MS.gene76492:CDS | 40.0% | |
| TTGCTGCTACACCATCATTT+CGG | - | chr2.3:2294012-2294031 | MS.gene76492:CDS | 40.0% | |
| ! | AATTTACGCTAGTTTAGCCG+GGG | - | chr2.3:2295499-2295518 | MS.gene76492:intron | 40.0% |
| ! | AGCTTTTCATATTGTTGGCC+TGG | - | chr2.3:2295583-2295602 | MS.gene76492:intron | 40.0% |
| ! | ATATTACCGGTGTCTGGTTT+GGG | + | chr2.3:2294196-2294215 | None:intergenic | 40.0% |
| ! | TTGCCTACTTTGAGCTTTGT+GGG | - | chr2.3:2294977-2294996 | MS.gene76492:intron | 40.0% |
| AATGAATACAAGGACGAGCC+AGG | + | chr2.3:2295604-2295623 | None:intergenic | 45.0% | |
| AATGTGATCGAAACGAAGGG+TGG | + | chr2.3:2294779-2294798 | None:intergenic | 45.0% | |
| ACCCTTCGTTTCGATCACAT+TGG | - | chr2.3:2294778-2294797 | MS.gene76492:intron | 45.0% | |
| AGGGAAATACCTTCTTCCAG+TGG | + | chr2.3:2294438-2294457 | None:intergenic | 45.0% | |
| ATATTGCTTGCTTCGGGGAT+AGG | - | chr2.3:2295470-2295489 | MS.gene76492:intron | 45.0% | |
| CACCGAAAAATGAAGCAGAC+AGG | + | chr2.3:2295131-2295150 | None:intergenic | 45.0% | |
| CTCAACAGGAGTTTGTGCAA+TGG | + | chr2.3:2296075-2296094 | None:intergenic | 45.0% | |
| CTTGCCTACTTTGAGCTTTG+TGG | - | chr2.3:2294976-2294995 | MS.gene76492:CDS | 45.0% | |
| GGAATCGAAAGTCACTGCAA+CGG | - | chr2.3:2295245-2295264 | MS.gene76492:intron | 45.0% | |
| GGGAAATACCTTCTTCCAGT+GGG | + | chr2.3:2294437-2294456 | None:intergenic | 45.0% | |
| GTTCAATAGAGTTTCCACGC+AGG | - | chr2.3:2294878-2294897 | MS.gene76492:CDS | 45.0% | |
| TACCAACAACAGCAGTGTTG+TGG | - | chr2.3:2294085-2294104 | MS.gene76492:CDS | 45.0% | |
| TGTGTTTCTTCAACAGGAGG+CGG | + | chr2.3:2295198-2295217 | None:intergenic | 45.0% | |
| TTCTTTCCACACATCTTCCC+CGG | + | chr2.3:2295519-2295538 | None:intergenic | 45.0% | |
| ! | CTCAACACTGGCACCATTTT+GGG | - | chr2.3:2295820-2295839 | MS.gene76492:intron | 45.0% |
| ! | TATTACCGGTGTCTGGTTTG+GGG | + | chr2.3:2294195-2294214 | None:intergenic | 45.0% |
| ! | TCTCAACACTGGCACCATTT+TGG | - | chr2.3:2295819-2295838 | MS.gene76492:intron | 45.0% |
| ! | TGTTACTTCCCACTGGAAGA+AGG | - | chr2.3:2294426-2294445 | MS.gene76492:intron | 45.0% |
| !! | AATGGCAGAGGTTGATAGTG+AGG | + | chr2.3:2296057-2296076 | None:intergenic | 45.0% |
| !! | ATGGCAGAGGTTGATAGTGA+GGG | + | chr2.3:2296056-2296075 | None:intergenic | 45.0% |
| !! | CTGTCTGCTTCATTTTTCGG+TGG | - | chr2.3:2295129-2295148 | MS.gene76492:intron | 45.0% |
| !!! | GAACACTGCTTTTTGAGCTG+TGG | + | chr2.3:2295095-2295114 | None:intergenic | 45.0% |
| AGGAGTTTGTGCAATGGCAG+AGG | + | chr2.3:2296069-2296088 | None:intergenic | 50.0% | |
| CAACAACAGCAGTGTTGTGG+AGG | - | chr2.3:2294088-2294107 | MS.gene76492:CDS | 50.0% | |
| CTCCACAACACTGCTGTTGT+TGG | + | chr2.3:2294090-2294109 | None:intergenic | 50.0% | |
| GATGGTGTAGCAGCAACAGA+GGG | + | chr2.3:2294008-2294027 | None:intergenic | 50.0% | |
| TATAAAGCAGGCCCCAGCAA+TGG | + | chr2.3:2296020-2296039 | None:intergenic | 50.0% | |
| ! | AGCATGCTGTTACTTCCCAC+TGG | - | chr2.3:2294419-2294438 | MS.gene76492:intron | 50.0% |
| ! | TGATGGTGTAGCAGCAACAG+AGG | + | chr2.3:2294009-2294028 | None:intergenic | 50.0% |
| ACGAAGGGTGGCATCATGCA+TGG | + | chr2.3:2294767-2294786 | None:intergenic | 55.0% | |
| AGCAGTGTTGTGGAGGAGGA+AGG | - | chr2.3:2294095-2294114 | MS.gene76492:CDS | 55.0% | |
| CAACAGCAGTGTTGTGGAGG+AGG | - | chr2.3:2294091-2294110 | MS.gene76492:CDS | 55.0% | |
| GTTTAGCCGGGGAAGATGTG+TGG | - | chr2.3:2295510-2295529 | MS.gene76492:intron | 55.0% | |
| GTTTCTTCAACAGGAGGCGG+TGG | + | chr2.3:2295195-2295214 | None:intergenic | 55.0% | |
| TCTCTCCCCAAACCAGACAC+CGG | - | chr2.3:2294187-2294206 | MS.gene76492:intron | 55.0% | |
| !! | AGGTTGATAGTGAGGGCCGT+AGG | + | chr2.3:2296049-2296068 | None:intergenic | 55.0% |
| GCAGACAGGAAGGGCCATAC+AGG | + | chr2.3:2295117-2295136 | None:intergenic | 60.0% | |
| TCTTCAACAGGAGGCGGTGG+AGG | + | chr2.3:2295192-2295211 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 2293990 | 2296103 | 2293990 | ID=MS.gene76492 |
| chr2.3 | mRNA | 2293990 | 2296103 | 2293990 | ID=MS.gene76492.t1;Parent=MS.gene76492 |
| chr2.3 | exon | 2295885 | 2296103 | 2295885 | ID=MS.gene76492.t1.exon1;Parent=MS.gene76492.t1 |
| chr2.3 | CDS | 2295885 | 2296103 | 2295885 | ID=cds.MS.gene76492.t1;Parent=MS.gene76492.t1 |
| chr2.3 | exon | 2295646 | 2295791 | 2295646 | ID=MS.gene76492.t1.exon2;Parent=MS.gene76492.t1 |
| chr2.3 | CDS | 2295646 | 2295791 | 2295646 | ID=cds.MS.gene76492.t1;Parent=MS.gene76492.t1 |
| chr2.3 | exon | 2294827 | 2294995 | 2294827 | ID=MS.gene76492.t1.exon3;Parent=MS.gene76492.t1 |
| chr2.3 | CDS | 2294827 | 2294995 | 2294827 | ID=cds.MS.gene76492.t1;Parent=MS.gene76492.t1 |
| chr2.3 | exon | 2294525 | 2294623 | 2294525 | ID=MS.gene76492.t1.exon4;Parent=MS.gene76492.t1 |
| chr2.3 | CDS | 2294525 | 2294623 | 2294525 | ID=cds.MS.gene76492.t1;Parent=MS.gene76492.t1 |
| chr2.3 | exon | 2294223 | 2294305 | 2294223 | ID=MS.gene76492.t1.exon5;Parent=MS.gene76492.t1 |
| chr2.3 | CDS | 2294223 | 2294305 | 2294223 | ID=cds.MS.gene76492.t1;Parent=MS.gene76492.t1 |
| chr2.3 | exon | 2293990 | 2294116 | 2293990 | ID=MS.gene76492.t1.exon6;Parent=MS.gene76492.t1 |
| chr2.3 | CDS | 2293990 | 2294116 | 2293990 | ID=cds.MS.gene76492.t1;Parent=MS.gene76492.t1 |
| Gene Sequence |
| Protein sequence |
