Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78405.t1 | AES67650.2 | 78 | 273 | 47 | 4 | 1 | 266 | 6 | 272 | 6.80E-101 | 377.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78405.t1 | Q5WHG0 | 52.7 | 74 | 30 | 1 | 67 | 135 | 7 | 80 | 4.5e-13 | 76.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78405.t1 | G7IRX6 | 78.0 | 273 | 47 | 4 | 1 | 266 | 6 | 272 | 4.9e-101 | 377.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049153 | MS.gene78405 | 0.803498 | 3.39E-49 | -1.69E-46 |
| MS.gene049170 | MS.gene78405 | 0.801051 | 1.08E-48 | -1.69E-46 |
| MS.gene049230 | MS.gene78405 | 0.828125 | 1.07E-54 | -1.69E-46 |
| MS.gene049378 | MS.gene78405 | 0.877923 | 4.25E-69 | -1.69E-46 |
| MS.gene049758 | MS.gene78405 | 0.828791 | 7.39E-55 | -1.69E-46 |
| MS.gene049910 | MS.gene78405 | 0.864858 | 8.98E-65 | -1.69E-46 |
| MS.gene049915 | MS.gene78405 | 0.81343 | 2.57E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene78405 | 0.863742 | 2.00E-64 | -1.69E-46 |
| MS.gene050227 | MS.gene78405 | 0.864359 | 1.29E-64 | -1.69E-46 |
| MS.gene050228 | MS.gene78405 | 0.870651 | 1.24E-66 | -1.69E-46 |
| MS.gene050330 | MS.gene78405 | -0.803676 | 3.11E-49 | -1.69E-46 |
| MS.gene050398 | MS.gene78405 | 0.802411 | 5.68E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene78405 | -0.822898 | 1.85E-53 | -1.69E-46 |
| MS.gene050464 | MS.gene78405 | 0.803588 | 3.25E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene78405 | -0.86891 | 4.59E-66 | -1.69E-46 |
| MS.gene050642 | MS.gene78405 | 0.882785 | 7.78E-71 | -1.69E-46 |
| MS.gene050763 | MS.gene78405 | 0.801188 | 1.01E-48 | -1.69E-46 |
| MS.gene05119 | MS.gene78405 | -0.819361 | 1.21E-52 | -1.69E-46 |
| MS.gene051535 | MS.gene78405 | 0.839132 | 1.90E-57 | -1.69E-46 |
| MS.gene051860 | MS.gene78405 | 0.827574 | 1.45E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene78405 | 0.894005 | 3.70E-75 | -1.69E-46 |
| MS.gene052011 | MS.gene78405 | -0.813587 | 2.37E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene78405 | 0.920176 | 1.78E-87 | -1.69E-46 |
| MS.gene052176 | MS.gene78405 | 0.833815 | 4.29E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene78405 | 0.815666 | 8.22E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene78405 | 0.816445 | 5.51E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene78405 | -0.813803 | 2.13E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene78405 | 0.834047 | 3.76E-56 | -1.69E-46 |
| MS.gene052389 | MS.gene78405 | 0.835953 | 1.24E-56 | -1.69E-46 |
| MS.gene052426 | MS.gene78405 | 0.825555 | 4.40E-54 | -1.69E-46 |
| MS.gene053073 | MS.gene78405 | 0.800492 | 1.40E-48 | -1.69E-46 |
| MS.gene05316 | MS.gene78405 | 0.818812 | 1.61E-52 | -1.69E-46 |
| MS.gene053494 | MS.gene78405 | 0.82836 | 9.39E-55 | -1.69E-46 |
| MS.gene053557 | MS.gene78405 | 0.816567 | 5.17E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene78405 | 0.854005 | 1.64E-61 | -1.69E-46 |
| MS.gene054183 | MS.gene78405 | 0.805961 | 1.04E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene78405 | 0.825925 | 3.59E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene78405 | 0.812265 | 4.62E-51 | -1.69E-46 |
| MS.gene054542 | MS.gene78405 | 0.811413 | 7.09E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene78405 | 0.880161 | 6.90E-70 | -1.69E-46 |
| MS.gene054983 | MS.gene78405 | 0.822238 | 2.64E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene78405 | 0.808306 | 3.30E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene78405 | 0.800758 | 1.24E-48 | -1.69E-46 |
| MS.gene05553 | MS.gene78405 | 0.843379 | 1.45E-58 | -1.69E-46 |
| MS.gene055701 | MS.gene78405 | 0.856167 | 3.86E-62 | -1.69E-46 |
| MS.gene056447 | MS.gene78405 | 0.82718 | 1.80E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene78405 | 0.810359 | 1.20E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene78405 | 0.903122 | 4.81E-79 | -1.69E-46 |
| MS.gene05702 | MS.gene78405 | 0.814933 | 1.20E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene78405 | 0.803699 | 3.08E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene78405 | 0.820529 | 6.54E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene78405 | 0.831162 | 1.95E-55 | -1.69E-46 |
| MS.gene058220 | MS.gene78405 | 0.804909 | 1.72E-49 | -1.69E-46 |
| MS.gene058435 | MS.gene78405 | 0.850604 | 1.53E-60 | -1.69E-46 |
| MS.gene058710 | MS.gene78405 | 0.833626 | 4.79E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene78405 | 0.818274 | 2.14E-52 | -1.69E-46 |
| MS.gene059247 | MS.gene78405 | 0.808746 | 2.66E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene78405 | 0.854733 | 1.01E-61 | -1.69E-46 |
| MS.gene059511 | MS.gene78405 | 0.851246 | 1.01E-60 | -1.69E-46 |
| MS.gene059597 | MS.gene78405 | 0.800949 | 1.13E-48 | -1.69E-46 |
| MS.gene059609 | MS.gene78405 | 0.807376 | 5.21E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene78405 | 0.852074 | 5.86E-61 | -1.69E-46 |
| MS.gene059894 | MS.gene78405 | 0.828091 | 1.09E-54 | -1.69E-46 |
| MS.gene060084 | MS.gene78405 | 0.82185 | 3.24E-53 | -1.69E-46 |
| MS.gene060297 | MS.gene78405 | 0.803633 | 3.18E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene78405 | 0.826321 | 2.89E-54 | -1.69E-46 |
| MS.gene060685 | MS.gene78405 | 0.818148 | 2.28E-52 | -1.69E-46 |
| MS.gene060940 | MS.gene78405 | 0.819363 | 1.21E-52 | -1.69E-46 |
| MS.gene061002 | MS.gene78405 | 0.812676 | 3.76E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene78405 | 0.840342 | 9.21E-58 | -1.69E-46 |
| MS.gene061114 | MS.gene78405 | -0.801914 | 7.19E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene78405 | 0.83731 | 5.61E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78405.t1 | MTR_2g097690 | 83.929 | 280 | 18 | 7 | 1 | 266 | 6 | 272 | 1.42e-158 | 441 |
| MS.gene78405.t1 | MTR_2g097690 | 78.889 | 180 | 16 | 6 | 1 | 166 | 6 | 177 | 1.07e-88 | 262 |
| MS.gene78405.t1 | MTR_7g085600 | 45.882 | 85 | 46 | 0 | 63 | 147 | 52 | 136 | 1.27e-15 | 75.5 |
| MS.gene78405.t1 | MTR_1g110310 | 46.914 | 81 | 40 | 2 | 66 | 145 | 17 | 95 | 2.36e-14 | 72.8 |
| MS.gene78405.t1 | MTR_7g069480 | 54.098 | 61 | 28 | 0 | 66 | 126 | 28 | 88 | 1.88e-13 | 70.1 |
| MS.gene78405.t1 | MTR_5g035770 | 46.591 | 88 | 42 | 3 | 66 | 152 | 26 | 109 | 3.13e-13 | 69.3 |
| MS.gene78405.t1 | MTR_8g081620 | 32.680 | 153 | 87 | 7 | 3 | 147 | 6 | 150 | 3.20e-13 | 67.0 |
| MS.gene78405.t1 | MTR_3g087030 | 28.959 | 221 | 111 | 8 | 55 | 239 | 74 | 284 | 5.83e-13 | 68.6 |
| MS.gene78405.t1 | MTR_2g436560 | 36.792 | 106 | 63 | 2 | 25 | 126 | 60 | 165 | 1.39e-12 | 67.0 |
| MS.gene78405.t1 | MTR_3g073560 | 34.677 | 124 | 56 | 3 | 27 | 140 | 384 | 492 | 3.93e-12 | 66.2 |
| MS.gene78405.t1 | MTR_2g436580 | 36.957 | 92 | 57 | 1 | 36 | 126 | 80 | 171 | 8.02e-12 | 63.9 |
| MS.gene78405.t1 | MTR_2g104030 | 51.667 | 60 | 29 | 0 | 67 | 126 | 72 | 131 | 9.53e-12 | 65.1 |
| MS.gene78405.t1 | MTR_4g094275 | 40.506 | 79 | 42 | 2 | 55 | 128 | 41 | 119 | 2.56e-11 | 61.2 |
| MS.gene78405.t1 | MTR_4g032805 | 50.000 | 64 | 30 | 1 | 65 | 126 | 128 | 191 | 3.01e-11 | 62.8 |
| MS.gene78405.t1 | MTR_3g061170 | 44.186 | 86 | 37 | 2 | 52 | 126 | 38 | 123 | 3.70e-11 | 60.5 |
| MS.gene78405.t1 | MTR_5g065160 | 45.946 | 74 | 33 | 2 | 67 | 133 | 85 | 158 | 4.42e-11 | 63.2 |
| MS.gene78405.t1 | MTR_5g065160 | 45.946 | 74 | 33 | 2 | 67 | 133 | 78 | 151 | 4.43e-11 | 63.2 |
| MS.gene78405.t1 | MTR_5g065160 | 45.946 | 74 | 33 | 2 | 67 | 133 | 84 | 157 | 4.49e-11 | 62.8 |
| MS.gene78405.t1 | MTR_5g065160 | 45.946 | 74 | 33 | 2 | 67 | 133 | 85 | 158 | 5.00e-11 | 62.8 |
| MS.gene78405.t1 | MTR_1g105540 | 41.333 | 75 | 39 | 1 | 67 | 136 | 37 | 111 | 7.50e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78405.t1 | AT5G59610 | 67.873 | 221 | 62 | 5 | 51 | 266 | 62 | 278 | 4.43e-96 | 283 |
| MS.gene78405.t1 | AT5G59610 | 67.873 | 221 | 62 | 5 | 51 | 266 | 62 | 278 | 4.43e-96 | 283 |
| MS.gene78405.t1 | AT5G59610 | 64.253 | 221 | 59 | 6 | 51 | 266 | 62 | 267 | 2.37e-85 | 256 |
| MS.gene78405.t1 | AT5G59610 | 64.253 | 221 | 59 | 6 | 51 | 266 | 62 | 267 | 2.37e-85 | 256 |
| MS.gene78405.t1 | AT5G59610 | 50.000 | 178 | 82 | 4 | 51 | 225 | 62 | 235 | 8.38e-46 | 154 |
| MS.gene78405.t1 | AT5G18140 | 33.607 | 122 | 68 | 2 | 38 | 146 | 42 | 163 | 1.47e-14 | 72.8 |
| MS.gene78405.t1 | AT3G17830 | 34.586 | 133 | 78 | 3 | 13 | 139 | 13 | 142 | 4.18e-13 | 69.3 |
| MS.gene78405.t1 | AT1G80030 | 51.899 | 79 | 35 | 2 | 50 | 126 | 59 | 136 | 4.68e-13 | 68.9 |
| MS.gene78405.t1 | AT1G80030 | 51.899 | 79 | 35 | 2 | 50 | 126 | 59 | 136 | 5.08e-13 | 68.9 |
| MS.gene78405.t1 | AT1G80030 | 51.899 | 79 | 35 | 2 | 50 | 126 | 59 | 136 | 5.08e-13 | 68.9 |
| MS.gene78405.t1 | AT1G80030 | 51.899 | 79 | 35 | 2 | 50 | 126 | 59 | 136 | 5.08e-13 | 68.9 |
| MS.gene78405.t1 | AT3G08970 | 52.459 | 61 | 29 | 0 | 66 | 126 | 28 | 88 | 1.14e-12 | 67.8 |
| MS.gene78405.t1 | AT3G08970 | 52.459 | 61 | 29 | 0 | 66 | 126 | 28 | 88 | 1.14e-12 | 67.8 |
| MS.gene78405.t1 | AT3G57340 | 35.922 | 103 | 65 | 1 | 25 | 126 | 72 | 174 | 1.22e-12 | 67.4 |
| MS.gene78405.t1 | AT3G57340 | 35.922 | 103 | 65 | 1 | 25 | 126 | 72 | 174 | 1.22e-12 | 67.4 |
| MS.gene78405.t1 | AT4G13830 | 34.028 | 144 | 69 | 6 | 5 | 135 | 10 | 140 | 1.45e-12 | 64.3 |
| MS.gene78405.t1 | AT5G05750 | 33.913 | 115 | 59 | 3 | 55 | 152 | 103 | 217 | 1.55e-12 | 66.6 |
| MS.gene78405.t1 | AT4G13830 | 33.750 | 160 | 76 | 7 | 5 | 147 | 10 | 156 | 1.68e-12 | 65.1 |
| MS.gene78405.t1 | AT4G13830 | 34.028 | 144 | 69 | 6 | 5 | 135 | 10 | 140 | 1.86e-12 | 64.7 |
| MS.gene78405.t1 | AT1G24120 | 43.182 | 88 | 45 | 3 | 66 | 152 | 21 | 104 | 2.91e-12 | 66.6 |
| MS.gene78405.t1 | AT5G49060 | 46.154 | 65 | 35 | 0 | 62 | 126 | 96 | 160 | 3.16e-12 | 66.2 |
| MS.gene78405.t1 | AT5G49060 | 46.154 | 65 | 35 | 0 | 62 | 126 | 96 | 160 | 3.16e-12 | 66.2 |
| MS.gene78405.t1 | AT1G68370 | 43.210 | 81 | 43 | 2 | 66 | 145 | 18 | 96 | 3.60e-12 | 66.2 |
| MS.gene78405.t1 | AT2G22360 | 53.333 | 60 | 28 | 0 | 67 | 126 | 88 | 147 | 4.43e-12 | 65.9 |
| MS.gene78405.t1 | AT4G39960 | 53.333 | 60 | 28 | 0 | 67 | 126 | 87 | 146 | 4.51e-12 | 65.9 |
| MS.gene78405.t1 | AT4G39960 | 53.333 | 60 | 28 | 0 | 67 | 126 | 87 | 146 | 4.51e-12 | 65.9 |
| MS.gene78405.t1 | AT1G59980 | 46.269 | 67 | 35 | 1 | 62 | 127 | 20 | 86 | 1.59e-11 | 64.3 |
| MS.gene78405.t1 | AT1G59980 | 46.269 | 67 | 35 | 1 | 62 | 127 | 20 | 86 | 1.64e-11 | 63.9 |
| MS.gene78405.t1 | AT1G28210 | 50.820 | 61 | 29 | 1 | 67 | 126 | 50 | 110 | 2.20e-11 | 63.9 |
| MS.gene78405.t1 | AT1G28210 | 50.820 | 61 | 29 | 1 | 67 | 126 | 50 | 110 | 2.30e-11 | 63.9 |
| MS.gene78405.t1 | AT1G28210 | 50.820 | 61 | 29 | 1 | 67 | 126 | 50 | 110 | 2.51e-11 | 63.5 |
| MS.gene78405.t1 | AT3G13310 | 45.714 | 70 | 36 | 1 | 61 | 130 | 60 | 127 | 9.53e-11 | 59.3 |
Find 48 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTACAGGAGACTTCTTTA+AGG | 0.240029 | 2.3:-5416047 | MS.gene78405:intron |
| TTGAAGAACTCGTTTGGTTT+TGG | 0.285091 | 2.3:+5419704 | None:intergenic |
| ATCTGTGAATGAAATCAAAA+AGG | 0.320337 | 2.3:-5419539 | MS.gene78405:CDS |
| GTGGTTATAGAAATAGAATA+AGG | 0.332364 | 2.3:-5419624 | MS.gene78405:CDS |
| GAGTCTCCATATGAAGTTCT+TGG | 0.367430 | 2.3:-5419577 | MS.gene78405:CDS |
| AGAGATGTTCAAATAACAAT+AGG | 0.374423 | 2.3:-5416266 | MS.gene78405:intron |
| CAACTTGTTGATTCCAACTC+TGG | 0.377760 | 2.3:+5417900 | None:intergenic |
| TAGAAATTGAAGAACTCGTT+TGG | 0.383805 | 2.3:+5419698 | None:intergenic |
| GACAAACCAAGAACTTCATA+TGG | 0.429946 | 2.3:+5419571 | None:intergenic |
| TCACCTTGAGTGCTGTTGCT+TGG | 0.430562 | 2.3:+5415522 | None:intergenic |
| ATTACCTCTTTATTAACATC+AGG | 0.432548 | 2.3:+5419487 | None:intergenic |
| TTCAAGAAGAGTTCAAGAAC+TGG | 0.433984 | 2.3:-5416021 | MS.gene78405:CDS |
| CTATATCTGATTCTGAAACT+AGG | 0.435657 | 2.3:+5419673 | None:intergenic |
| AAGGAAAGCCGAAGAGCCTA+TGG | 0.442336 | 2.3:-5415979 | MS.gene78405:CDS |
| ATGAAGATGGTTGAAGAAAT+CGG | 0.458404 | 2.3:+5419737 | None:intergenic |
| GGAAATAGGCGAAGAATTTG+TGG | 0.458728 | 2.3:-5415631 | MS.gene78405:CDS |
| AACTCCTCCCATAGGCTCTT+CGG | 0.475580 | 2.3:+5415971 | None:intergenic |
| TGATTCAAATGAAAGTCCTC+AGG | 0.489157 | 2.3:-5415580 | MS.gene78405:CDS |
| CACTCAAGGTGAAGCTAGCA+AGG | 0.491535 | 2.3:-5415511 | MS.gene78405:CDS |
| TGGTTATAGAAATAGAATAA+GGG | 0.496924 | 2.3:-5419623 | MS.gene78405:CDS |
| GAGCCTATGGGAGGAGTTGT+CGG | 0.510611 | 2.3:-5415966 | MS.gene78405:intron |
| ATTCTTCTCAAAGCCAGAGT+TGG | 0.510710 | 2.3:-5417913 | MS.gene78405:CDS |
| TCATCCTGATGTTAATAAAG+AGG | 0.514132 | 2.3:-5419491 | MS.gene78405:intron |
| GAGTGGCTTCTATTTCATCA+AGG | 0.517887 | 2.3:+5415466 | None:intergenic |
| TTCAGAATCATACTTTCTGC+GGG | 0.518411 | 2.3:+5417949 | None:intergenic |
| ATTTCATTCACAGATGCAGA+TGG | 0.530663 | 2.3:+5419547 | None:intergenic |
| TTTCAGAATCATACTTTCTG+CGG | 0.543741 | 2.3:+5417948 | None:intergenic |
| ACACCAAGCAACAGCACTCA+AGG | 0.557671 | 2.3:-5415525 | MS.gene78405:CDS |
| CAGCATGAGAACAAAGGAAG+AGG | 0.565694 | 2.3:-5419646 | MS.gene78405:CDS |
| AAATAGAAGCCACTCTAGCT+CGG | 0.585461 | 2.3:-5415458 | MS.gene78405:CDS |
| GAAGCTAGTGCGGCTGCACA+AGG | 0.586139 | 2.3:-5415998 | MS.gene78405:CDS |
| TAAGGGTAGTTGTAAGAGCA+AGG | 0.586280 | 2.3:-5419606 | MS.gene78405:CDS |
| AGAAAGCAGCATGAGAACAA+AGG | 0.590712 | 2.3:-5419652 | MS.gene78405:CDS |
| CAAGAACTGGGAAGCTAGTG+CGG | 0.594019 | 2.3:-5416008 | MS.gene78405:CDS |
| TCAAGAAGAGTTCAAGAACT+GGG | 0.606488 | 2.3:-5416020 | MS.gene78405:CDS |
| CAATATTGAGTTCTTTCTCG+AGG | 0.608230 | 2.3:+5415604 | None:intergenic |
| TCACCGACAACTCCTCCCAT+AGG | 0.620299 | 2.3:+5415963 | None:intergenic |
| AAGTATGATTCTGAAAATCG+TGG | 0.629512 | 2.3:-5417941 | MS.gene78405:CDS |
| CATGAGAACAAAGGAAGAGG+TGG | 0.630174 | 2.3:-5419643 | MS.gene78405:CDS |
| CAAGGGAAACACAAGCGTTG+AGG | 0.630371 | 2.3:-5415493 | MS.gene78405:CDS |
| AGGAAAGCCGAAGAGCCTAT+GGG | 0.632474 | 2.3:-5415978 | MS.gene78405:CDS |
| GATTCAAATGAAAGTCCTCA+GGG | 0.638771 | 2.3:-5415579 | MS.gene78405:CDS |
| ATTCTCACAGGACAATGCAC+AGG | 0.650566 | 2.3:-5418023 | MS.gene78405:intron |
| TTAGATGAATTTCCTCCCTG+AGG | 0.666308 | 2.3:+5415564 | None:intergenic |
| ACTCAAGGTGAAGCTAGCAA+GGG | 0.673091 | 2.3:-5415510 | MS.gene78405:CDS |
| AAAGCCGAAGAGCCTATGGG+AGG | 0.695988 | 2.3:-5415975 | MS.gene78405:CDS |
| TCAAATGAAAGTCCTCAGGG+AGG | 0.744401 | 2.3:-5415576 | MS.gene78405:CDS |
| GTAGTTGTAAGAGCAAGGCG+TGG | 0.746025 | 2.3:-5419601 | MS.gene78405:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAATTTTGATTTTGTTT+TGG | - | chr2.3:5418650-5418669 | MS.gene78405:intron | 10.0% |
| !! | AAAAAAAAATAGATCAGTAA+TGG | + | chr2.3:5418315-5418334 | None:intergenic | 15.0% |
| !! | AAAAAAAATAGATCAGTAAT+GGG | + | chr2.3:5418314-5418333 | None:intergenic | 15.0% |
| !! | TGCTAATAATATCATAATAA+TGG | + | chr2.3:5415938-5415957 | None:intergenic | 15.0% |
| !! | TTAGAAAAATAAAACAACAT+AGG | + | chr2.3:5416775-5416794 | None:intergenic | 15.0% |
| !!! | ATATCTTAATGGATTTATTA+TGG | + | chr2.3:5417624-5417643 | None:intergenic | 15.0% |
| !!! | ATGTGATTTTAAAAACAAAT+AGG | + | chr2.3:5419397-5419416 | None:intergenic | 15.0% |
| !!! | ATGTTGTTTTATTTTTCTAA+AGG | - | chr2.3:5416775-5416794 | MS.gene78405:intron | 15.0% |
| !!! | TTTTTGAAATTTTAACTTTC+AGG | - | chr2.3:5419548-5419567 | MS.gene78405:CDS | 15.0% |
| !! | AAAATAGATTTGTAACTTTG+AGG | + | chr2.3:5418489-5418508 | None:intergenic | 20.0% |
| !! | AAGTTACTAATTTGATCAAA+TGG | + | chr2.3:5418851-5418870 | None:intergenic | 20.0% |
| !! | AATATAGATAAAGGATAATC+TGG | - | chr2.3:5418244-5418263 | MS.gene78405:intron | 20.0% |
| !! | ATAATGATGTAGTCATATAA+CGG | - | chr2.3:5417037-5417056 | MS.gene78405:intron | 20.0% |
| !! | ATATTATTAGTAGGATGTAA+TGG | - | chr2.3:5417521-5417540 | MS.gene78405:intron | 20.0% |
| !! | CTTAGTAGTTTATTATTATG+TGG | - | chr2.3:5415766-5415785 | MS.gene78405:intron | 20.0% |
| !! | GAGTGATAAAAATATCTTAA+TGG | + | chr2.3:5417635-5417654 | None:intergenic | 20.0% |
| !! | TAAAATTTGTAATGAAATGC+AGG | + | chr2.3:5419013-5419032 | None:intergenic | 20.0% |
| !! | TAATAGTAAACTTCAGTTTA+AGG | + | chr2.3:5417660-5417679 | None:intergenic | 20.0% |
| !! | TGGTTATAGAAATAGAATAA+GGG | - | chr2.3:5415577-5415596 | MS.gene78405:CDS | 20.0% |
| !! | TTTGAAGATAAAAGATTTCA+TGG | - | chr2.3:5416004-5416023 | MS.gene78405:CDS | 20.0% |
| !!! | AAAACTTTTTAAATTGACAG+TGG | - | chr2.3:5419445-5419464 | MS.gene78405:intron | 20.0% |
| !!! | AATTTTAACTTTCAGGAAAT+AGG | - | chr2.3:5419555-5419574 | MS.gene78405:CDS | 20.0% |
| !!! | CATTTCATTACAAATTTTAC+TGG | - | chr2.3:5419014-5419033 | MS.gene78405:intron | 20.0% |
| !!! | GTTTTATATTTCATTTCATG+TGG | - | chr2.3:5419107-5419126 | MS.gene78405:intron | 20.0% |
| !!! | TAACATTTTTATTTGTGTGT+TGG | - | chr2.3:5419270-5419289 | MS.gene78405:intron | 20.0% |
| !!! | TACTCTTTTCTATGTTAATT+TGG | - | chr2.3:5417551-5417570 | MS.gene78405:intron | 20.0% |
| !!! | TTCTAAGGTAATATAGATAA+AGG | - | chr2.3:5418235-5418254 | MS.gene78405:intron | 20.0% |
| !!! | TTTTAGAAAAACAAGGATAA+AGG | - | chr2.3:5416969-5416988 | MS.gene78405:intron | 20.0% |
| ! | AAATCCACAAAGATATTCTA+AGG | - | chr2.3:5418220-5418239 | MS.gene78405:intron | 25.0% |
| ! | AAGGATTCAATTATATACAC+TGG | - | chr2.3:5419302-5419321 | MS.gene78405:intron | 25.0% |
| ! | ACACAAATAAAAATGTTAGC+GGG | + | chr2.3:5419268-5419287 | None:intergenic | 25.0% |
| ! | ACTAATAGTACTAGTACTTA+AGG | + | chr2.3:5418167-5418186 | None:intergenic | 25.0% |
| ! | AGAGATGTTCAAATAACAAT+AGG | - | chr2.3:5418934-5418953 | MS.gene78405:intron | 25.0% |
| ! | ATCAAAAGAGATGAAATACA+AGG | - | chr2.3:5418368-5418387 | MS.gene78405:intron | 25.0% |
| ! | ATCCTACTAATAATATATGC+CGG | + | chr2.3:5417517-5417536 | None:intergenic | 25.0% |
| ! | ATCTGTGAATGAAATCAAAA+AGG | - | chr2.3:5415661-5415680 | MS.gene78405:intron | 25.0% |
| ! | ATGAAATCAAAAAGGCTTAT+AGG | - | chr2.3:5415669-5415688 | MS.gene78405:intron | 25.0% |
| ! | ATTACCTCTTTATTAACATC+AGG | + | chr2.3:5415716-5415735 | None:intergenic | 25.0% |
| ! | ATTACCTTAGAATATCTTTG+TGG | + | chr2.3:5418227-5418246 | None:intergenic | 25.0% |
| ! | ATTAGTATTAGAAGAGTTCA+AGG | + | chr2.3:5418767-5418786 | None:intergenic | 25.0% |
| ! | ATTATGGCTATATCATTAGT+TGG | + | chr2.3:5417608-5417627 | None:intergenic | 25.0% |
| ! | CAATAGTTTCCTGTAAAAAT+GGG | + | chr2.3:5417867-5417886 | None:intergenic | 25.0% |
| ! | CACACAAATAAAAATGTTAG+CGG | + | chr2.3:5419269-5419288 | None:intergenic | 25.0% |
| ! | CTACAGAAAATGTTAAATAG+TGG | - | chr2.3:5416086-5416105 | MS.gene78405:intron | 25.0% |
| ! | GTGGTTATAGAAATAGAATA+AGG | - | chr2.3:5415576-5415595 | MS.gene78405:CDS | 25.0% |
| ! | TAAAGGAGAACATAAATAGA+GGG | + | chr2.3:5418742-5418761 | None:intergenic | 25.0% |
| ! | TGACATTCATACTATAATCA+TGG | + | chr2.3:5416656-5416675 | None:intergenic | 25.0% |
| ! | TGTGAAATAACAACTATAGT+GGG | - | chr2.3:5416158-5416177 | MS.gene78405:intron | 25.0% |
| ! | TTAATTTAACGAAGATGGTA+CGG | - | chr2.3:5418687-5418706 | MS.gene78405:intron | 25.0% |
| ! | TTGTGAAATAACAACTATAG+TGG | - | chr2.3:5416157-5416176 | MS.gene78405:intron | 25.0% |
| !! | AATTGTCAGATACAATCTTT+TGG | + | chr2.3:5417089-5417108 | None:intergenic | 25.0% |
| !! | ATACTTTTCTTGAGTATTTG+GGG | + | chr2.3:5417964-5417983 | None:intergenic | 25.0% |
| !! | ATATCTTTGTGGATTTGTTT+AGG | + | chr2.3:5418216-5418235 | None:intergenic | 25.0% |
| !! | ATGTAGTAGTATTTGTCTTT+TGG | - | chr2.3:5418098-5418117 | MS.gene78405:intron | 25.0% |
| !! | CAATAAGTTGGAAAAAGTTT+CGG | - | chr2.3:5416625-5416644 | MS.gene78405:intron | 25.0% |
| !! | GAAGAAGAATTTTATGGATT+AGG | - | chr2.3:5417322-5417341 | MS.gene78405:intron | 25.0% |
| !! | GATACTTTTCTTGAGTATTT+GGG | + | chr2.3:5417965-5417984 | None:intergenic | 25.0% |
| !! | TATTTTATGCTCCAATAAGT+TGG | - | chr2.3:5416613-5416632 | MS.gene78405:intron | 25.0% |
| !! | TGATACTTTTCTTGAGTATT+TGG | + | chr2.3:5417966-5417985 | None:intergenic | 25.0% |
| !! | TGGATTTAATTTAACGAAGA+TGG | - | chr2.3:5418682-5418701 | MS.gene78405:intron | 25.0% |
| !! | TTATGTGGAAGTTTTTGTAT+AGG | - | chr2.3:5415781-5415800 | MS.gene78405:intron | 25.0% |
| !! | TTGTCTTTTGGATTAAAAGA+GGG | - | chr2.3:5418110-5418129 | MS.gene78405:intron | 25.0% |
| !! | TTTGTCTTTTGGATTAAAAG+AGG | - | chr2.3:5418109-5418128 | MS.gene78405:intron | 25.0% |
| !!! | ACTTTGAGGTTAAGTTTATT+CGG | + | chr2.3:5418475-5418494 | None:intergenic | 25.0% |
| !!! | ATTTTAAAGTGTATTCTCAC+AGG | - | chr2.3:5417165-5417184 | MS.gene78405:intron | 25.0% |
| !!! | CAAGTTGAAGAAGAATTTTA+TGG | - | chr2.3:5417316-5417335 | MS.gene78405:intron | 25.0% |
| !!! | CATCTCTTTTGATTAATGAA+AGG | + | chr2.3:5418361-5418380 | None:intergenic | 25.0% |
| !!! | GTATGGATTTTAGAAAAACA+AGG | - | chr2.3:5416962-5416981 | MS.gene78405:intron | 25.0% |
| !!! | TATTTTTCTAAAGGAAATCC+CGG | - | chr2.3:5416784-5416803 | MS.gene78405:intron | 25.0% |
| !!! | TCTGATGATTTTGTTATTAC+AGG | - | chr2.3:5419139-5419158 | MS.gene78405:intron | 25.0% |
| !!! | TTTTGTTTTGGTTTATTGTG+TGG | - | chr2.3:5418662-5418681 | MS.gene78405:intron | 25.0% |
| AAAAAAGGAGTTAGGCTTAT+AGG | - | chr2.3:5419767-5419786 | MS.gene78405:CDS | 30.0% | |
| AAAAGAGATGAAATACAAGG+AGG | - | chr2.3:5418371-5418390 | MS.gene78405:intron | 30.0% | |
| AACAATGTGCTTTACTAACA+AGG | + | chr2.3:5416585-5416604 | None:intergenic | 30.0% | |
| AACATAGGAAAATCCAAGAT+TGG | + | chr2.3:5416760-5416779 | None:intergenic | 30.0% | |
| AACCGGCATATATTATTAGT+AGG | - | chr2.3:5417512-5417531 | MS.gene78405:intron | 30.0% | |
| AATCTCTAACAACAACCAAA+TGG | - | chr2.3:5418541-5418560 | MS.gene78405:intron | 30.0% | |
| AATTACAGCCTTAGGATAAT+AGG | - | chr2.3:5417446-5417465 | MS.gene78405:intron | 30.0% | |
| AATTGTTAAGAGTCCAACAT+CGG | - | chr2.3:5416261-5416280 | MS.gene78405:intron | 30.0% | |
| AGGATTAGGGAAAAAGAAAA+AGG | - | chr2.3:5417466-5417485 | MS.gene78405:intron | 30.0% | |
| AGTTTATTACGCATGACTTA+AGG | + | chr2.3:5418075-5418094 | None:intergenic | 30.0% | |
| ATCATATTTCAGTCATGCTT+CGG | + | chr2.3:5418136-5418155 | None:intergenic | 30.0% | |
| ATGAAGATGGTTGAAGAAAT+CGG | + | chr2.3:5415466-5415485 | None:intergenic | 30.0% | |
| CACTATTGTTTGTGATTTAG+GGG | - | chr2.3:5415888-5415907 | MS.gene78405:intron | 30.0% | |
| CTAAAGGAGAACATAAATAG+AGG | + | chr2.3:5418743-5418762 | None:intergenic | 30.0% | |
| CTATCATCTTAAGTTTCTGA+TGG | + | chr2.3:5417809-5417828 | None:intergenic | 30.0% | |
| CTGACAATGTGTTTATAAGT+GGG | - | chr2.3:5416296-5416315 | MS.gene78405:intron | 30.0% | |
| GCAATAGTTTCCTGTAAAAA+TGG | + | chr2.3:5417868-5417887 | None:intergenic | 30.0% | |
| GCACTATTGTTTGTGATTTA+GGG | - | chr2.3:5415887-5415906 | MS.gene78405:intron | 30.0% | |
| TACTAATTTGATCAAATGGC+AGG | + | chr2.3:5418847-5418866 | None:intergenic | 30.0% | |
| TAGAAATTGAAGAACTCGTT+TGG | + | chr2.3:5415505-5415524 | None:intergenic | 30.0% | |
| TATTACAGGAGACTTCTTTA+AGG | - | chr2.3:5419153-5419172 | MS.gene78405:intron | 30.0% | |
| TATTCTTAGAAATCGTGGTT+GGG | + | chr2.3:5416366-5416385 | None:intergenic | 30.0% | |
| TCAATATTCACAGCACAATT+TGG | + | chr2.3:5416061-5416080 | None:intergenic | 30.0% | |
| TCATCCTGATGTTAATAAAG+AGG | - | chr2.3:5415709-5415728 | MS.gene78405:intron | 30.0% | |
| TCCATTATTCTTAGAAATCG+TGG | + | chr2.3:5416371-5416390 | None:intergenic | 30.0% | |
| TCCCATATAAATCTATCAAC+CGG | - | chr2.3:5419053-5419072 | MS.gene78405:intron | 30.0% | |
| TCTGACAATGTGTTTATAAG+TGG | - | chr2.3:5416295-5416314 | MS.gene78405:intron | 30.0% | |
| TGACAATGTGTTTATAAGTG+GGG | - | chr2.3:5416297-5416316 | MS.gene78405:intron | 30.0% | |
| TGCACTATTGTTTGTGATTT+AGG | - | chr2.3:5415886-5415905 | MS.gene78405:intron | 30.0% | |
| TGTTTATCATCTTCCAATCT+TGG | - | chr2.3:5416744-5416763 | MS.gene78405:intron | 30.0% | |
| TTATTCTTAGAAATCGTGGT+TGG | + | chr2.3:5416367-5416386 | None:intergenic | 30.0% | |
| TTCATGGTTGCAAACTTTAT+TGG | - | chr2.3:5416020-5416039 | MS.gene78405:CDS | 30.0% | |
| TTTCAGAATCATACTTTCTG+CGG | + | chr2.3:5417255-5417274 | None:intergenic | 30.0% | |
| TTTCCTAGATCTTGTTAAGA+TGG | + | chr2.3:5418283-5418302 | None:intergenic | 30.0% | |
| ! | AAGTATGATTCTGAAAATCG+TGG | - | chr2.3:5417259-5417278 | MS.gene78405:intron | 30.0% |
| ! | ACCACGATTTCTAAGAATAA+TGG | - | chr2.3:5416367-5416386 | MS.gene78405:intron | 30.0% |
| ! | TGCTATGTTCAACACTTTTA+TGG | - | chr2.3:5415736-5415755 | MS.gene78405:intron | 30.0% |
| ! | TGGAAGTTTTTGTATAGGTT+TGG | - | chr2.3:5415786-5415805 | MS.gene78405:intron | 30.0% |
| !! | AATTCACAAACCGATTTTGT+GGG | - | chr2.3:5416329-5416348 | MS.gene78405:intron | 30.0% |
| !! | AATTTTTGTTTGTCCATCAG+CGG | + | chr2.3:5416889-5416908 | None:intergenic | 30.0% |
| !! | ATTGAAGGTTTTGTGATTTG+AGG | + | chr2.3:5417764-5417783 | None:intergenic | 30.0% |
| !! | ATTTTTCTAAAGGAAATCCC+GGG | - | chr2.3:5416785-5416804 | MS.gene78405:intron | 30.0% |
| !! | CGAAACTTTTTCCAACTTAT+TGG | + | chr2.3:5416627-5416646 | None:intergenic | 30.0% |
| !! | CTATATCTGATTCTGAAACT+AGG | + | chr2.3:5415530-5415549 | None:intergenic | 30.0% |
| !! | TACTTATTTGCAGTCTTGTT+TGG | - | chr2.3:5417355-5417374 | MS.gene78405:intron | 30.0% |
| !! | TCAAGAAAAGTATCAAACAC+TGG | - | chr2.3:5417971-5417990 | MS.gene78405:CDS | 30.0% |
| !! | TTGAAGGTTTTGTGATTTGA+GGG | + | chr2.3:5417763-5417782 | None:intergenic | 30.0% |
| !!! | TAGCAGTTTTGAATGATATG+TGG | - | chr2.3:5415953-5415972 | MS.gene78405:intron | 30.0% |
| AAAAGAAAAAGGCAGAAAGG+TGG | - | chr2.3:5417477-5417496 | MS.gene78405:intron | 35.0% | |
| AAATAACAACGTGAGAAGAC+TGG | - | chr2.3:5416683-5416702 | MS.gene78405:intron | 35.0% | |
| AACAAGATCTAGGAAACGAT+TGG | - | chr2.3:5418287-5418306 | MS.gene78405:intron | 35.0% | |
| AACTGCACCAAATACATGAA+TGG | + | chr2.3:5418611-5418630 | None:intergenic | 35.0% | |
| AATAACAACGTGAGAAGACT+GGG | - | chr2.3:5416684-5416703 | MS.gene78405:intron | 35.0% | |
| ACAAGGAGACTTAAAAAGTC+AGG | + | chr2.3:5416568-5416587 | None:intergenic | 35.0% | |
| ACATAAATAGAGGGTGATTG+AGG | + | chr2.3:5418733-5418752 | None:intergenic | 35.0% | |
| AGCCTTAGGATAATAGGATT+AGG | - | chr2.3:5417452-5417471 | MS.gene78405:intron | 35.0% | |
| AGCTCATAATCTAGCTATAG+CGG | + | chr2.3:5418435-5418454 | None:intergenic | 35.0% | |
| ATAGGTAGCTATATACTCTC+TGG | - | chr2.3:5418952-5418971 | MS.gene78405:intron | 35.0% | |
| ATTGTGCTGTGAATATTGAC+TGG | - | chr2.3:5416062-5416081 | MS.gene78405:intron | 35.0% | |
| ATTTCATTCACAGATGCAGA+TGG | + | chr2.3:5415656-5415675 | None:intergenic | 35.0% | |
| CAAATAAAAATGTTAGCGGG+AGG | + | chr2.3:5419265-5419284 | None:intergenic | 35.0% | |
| CAATATTGAGTTCTTTCTCG+AGG | + | chr2.3:5419599-5419618 | None:intergenic | 35.0% | |
| CATAGAACACAACAACGAAT+TGG | + | chr2.3:5415866-5415885 | None:intergenic | 35.0% | |
| CCCATATAAATCTATCAACC+GGG | - | chr2.3:5419054-5419073 | MS.gene78405:intron | 35.0% | |
| CGAGTTATGTTCAGAATTGA+AGG | + | chr2.3:5417779-5417798 | None:intergenic | 35.0% | |
| CTAAGGCTGTAATTCTGTAA+CGG | + | chr2.3:5417440-5417459 | None:intergenic | 35.0% | |
| CTAATGTGCTAAGTTTCTCT+TGG | + | chr2.3:5417890-5417909 | None:intergenic | 35.0% | |
| CTAGAACCATCTTAAATGTG+TGG | - | chr2.3:5416542-5416561 | MS.gene78405:intron | 35.0% | |
| CTCATCTAGCCAAATAACTT+AGG | - | chr2.3:5417720-5417739 | MS.gene78405:intron | 35.0% | |
| CTTCCATCTTAACAAGATCT+AGG | - | chr2.3:5418277-5418296 | MS.gene78405:intron | 35.0% | |
| GACAAACCAAGAACTTCATA+TGG | + | chr2.3:5415632-5415651 | None:intergenic | 35.0% | |
| GACAATGTGTTTATAAGTGG+GGG | - | chr2.3:5416298-5416317 | MS.gene78405:intron | 35.0% | |
| GAGGAACAAAATCAAAGACT+CGG | - | chr2.3:5418390-5418409 | MS.gene78405:intron | 35.0% | |
| GATTCAAATGAAAGTCCTCA+GGG | - | chr2.3:5419621-5419640 | MS.gene78405:CDS | 35.0% | |
| GCCTTAGGATAATAGGATTA+GGG | - | chr2.3:5417453-5417472 | MS.gene78405:intron | 35.0% | |
| GGAAAAAGAAAAAGGCAGAA+AGG | - | chr2.3:5417474-5417493 | MS.gene78405:intron | 35.0% | |
| TAGAAGAGTTCAAGGACTAA+AGG | + | chr2.3:5418759-5418778 | None:intergenic | 35.0% | |
| TCAAGAAGAGTTCAAGAACT+GGG | - | chr2.3:5419180-5419199 | MS.gene78405:intron | 35.0% | |
| TCATCTTAAGTTTCTGATGG+AGG | + | chr2.3:5417806-5417825 | None:intergenic | 35.0% | |
| TCCCTAATCCTATTATCCTA+AGG | + | chr2.3:5417457-5417476 | None:intergenic | 35.0% | |
| TGATTCAAATGAAAGTCCTC+AGG | - | chr2.3:5419620-5419639 | MS.gene78405:CDS | 35.0% | |
| TGCTAGTTGCCTAAGTTATT+TGG | + | chr2.3:5417732-5417751 | None:intergenic | 35.0% | |
| TGTCAATCAATCGTGATCAT+CGG | - | chr2.3:5419346-5419365 | MS.gene78405:intron | 35.0% | |
| TTCAAGAAGAGTTCAAGAAC+TGG | - | chr2.3:5419179-5419198 | MS.gene78405:intron | 35.0% | |
| TTCAGAATCATACTTTCTGC+GGG | + | chr2.3:5417254-5417273 | None:intergenic | 35.0% | |
| TTGAGGTTAAGTTTATTCGG+AGG | + | chr2.3:5418472-5418491 | None:intergenic | 35.0% | |
| ! | ATGCACAGGAGAAATTTTTG+AGG | - | chr2.3:5417191-5417210 | MS.gene78405:intron | 35.0% |
| ! | GCTATATCATTAGTTGGCTT+GGG | + | chr2.3:5417602-5417621 | None:intergenic | 35.0% |
| ! | GTCATATAACGGCTCTATTT+TGG | - | chr2.3:5417048-5417067 | MS.gene78405:intron | 35.0% |
| ! | TCAGATACAATCTTTTGGCA+CGG | + | chr2.3:5417084-5417103 | None:intergenic | 35.0% |
| ! | TTTTCTTGAGTATTTGGGGA+TGG | + | chr2.3:5417960-5417979 | None:intergenic | 35.0% |
| !! | AAACTGCAACCCATTTTTAC+AGG | - | chr2.3:5417855-5417874 | MS.gene78405:intron | 35.0% |
| !! | ATTCACAAACCGATTTTGTG+GGG | - | chr2.3:5416330-5416349 | MS.gene78405:intron | 35.0% |
| !! | CAATTCACAAACCGATTTTG+TGG | - | chr2.3:5416328-5416347 | MS.gene78405:intron | 35.0% |
| !! | CCCGGTTGATAGATTTATAT+GGG | + | chr2.3:5419057-5419076 | None:intergenic | 35.0% |
| !! | TCCCGGTTGATAGATTTATA+TGG | + | chr2.3:5419058-5419077 | None:intergenic | 35.0% |
| !! | TGAAGGTTTTGTGATTTGAG+GGG | + | chr2.3:5417762-5417781 | None:intergenic | 35.0% |
| !! | TTGAAGAACTCGTTTGGTTT+TGG | + | chr2.3:5415499-5415518 | None:intergenic | 35.0% |
| !!! | AACTCGTTTGGTTTTGGTTT+TGG | + | chr2.3:5415493-5415512 | None:intergenic | 35.0% |
| AAAATGATGAGTCCACGTGT+AGG | + | chr2.3:5419532-5419551 | None:intergenic | 40.0% | |
| AAAGCCTTCAGTATGCAACA+AGG | - | chr2.3:5419505-5419524 | MS.gene78405:CDS | 40.0% | |
| AAATAGAAGCCACTCTAGCT+CGG | - | chr2.3:5419742-5419761 | MS.gene78405:CDS | 40.0% | |
| AAATCTATCAACCGGGACAA+AGG | - | chr2.3:5419061-5419080 | MS.gene78405:intron | 40.0% | |
| AATCTATCAACCGGGACAAA+GGG | - | chr2.3:5419062-5419081 | MS.gene78405:intron | 40.0% | |
| ACAATCAGTGTTGTCAACTG+CGG | + | chr2.3:5416230-5416249 | None:intergenic | 40.0% | |
| ACCTTGTGACAATGTGAAAG+TGG | + | chr2.3:5416449-5416468 | None:intergenic | 40.0% | |
| AGAAAGCAGCATGAGAACAA+AGG | - | chr2.3:5415548-5415567 | MS.gene78405:CDS | 40.0% | |
| AGGTAATTGTTCTTGTCGCT+AGG | + | chr2.3:5418196-5418215 | None:intergenic | 40.0% | |
| ATACCTCGCTGAAAACCATT+TGG | + | chr2.3:5418559-5418578 | None:intergenic | 40.0% | |
| ATCCTGAACCATTCAAACAC+AGG | - | chr2.3:5417913-5417932 | MS.gene78405:CDS | 40.0% | |
| ATTCTTCTCAAAGCCAGAGT+TGG | - | chr2.3:5417287-5417306 | MS.gene78405:intron | 40.0% | |
| ATTTGATCAAATGGCAGGAC+AGG | + | chr2.3:5418842-5418861 | None:intergenic | 40.0% | |
| CAAATTCCGGTACACGATAA+AGG | + | chr2.3:5416184-5416203 | None:intergenic | 40.0% | |
| CAGCAGACCATTCATGTATT+TGG | - | chr2.3:5418601-5418620 | MS.gene78405:intron | 40.0% | |
| CATTGTCACAAGGTTTGTCA+TGG | - | chr2.3:5416455-5416474 | MS.gene78405:intron | 40.0% | |
| CGTTACAGAATTACAGCCTT+AGG | - | chr2.3:5417438-5417457 | MS.gene78405:intron | 40.0% | |
| CTAACACAACCCCACAAAAT+CGG | + | chr2.3:5416342-5416361 | None:intergenic | 40.0% | |
| CTACAAGTGTACATACATGC+AGG | + | chr2.3:5416722-5416741 | None:intergenic | 40.0% | |
| CTTAAGTTTCTGATGGAGGT+CGG | + | chr2.3:5417802-5417821 | None:intergenic | 40.0% | |
| GAGTCTCCATATGAAGTTCT+TGG | - | chr2.3:5415623-5415642 | MS.gene78405:CDS | 40.0% | |
| GAGTGGCTTCTATTTCATCA+AGG | + | chr2.3:5419737-5419756 | None:intergenic | 40.0% | |
| GCTCGGTTAAAAAAGGAGTT+AGG | - | chr2.3:5419759-5419778 | MS.gene78405:CDS | 40.0% | |
| GGAAATAGGCGAAGAATTTG+TGG | - | chr2.3:5419569-5419588 | MS.gene78405:CDS | 40.0% | |
| GGCTATATCATTAGTTGGCT+TGG | + | chr2.3:5417603-5417622 | None:intergenic | 40.0% | |
| GTGAGTGATCATCACAAGTT+TGG | + | chr2.3:5418009-5418028 | None:intergenic | 40.0% | |
| TAAGGGTAGTTGTAAGAGCA+AGG | - | chr2.3:5415594-5415613 | MS.gene78405:CDS | 40.0% | |
| TACGCATGACTTAAGGTTCA+GGG | + | chr2.3:5418068-5418087 | None:intergenic | 40.0% | |
| TCCACTTTCACATTGTCACA+AGG | - | chr2.3:5416445-5416464 | MS.gene78405:intron | 40.0% | |
| TGAAATGCAGGCTAAACTCA+TGG | + | chr2.3:5419001-5419020 | None:intergenic | 40.0% | |
| TGAACCATTCAAACACAGGA+AGG | - | chr2.3:5417917-5417936 | MS.gene78405:CDS | 40.0% | |
| TGGTGCAGTTAAAAACTGTC+AGG | - | chr2.3:5418621-5418640 | MS.gene78405:intron | 40.0% | |
| TGTGTGTTGGAGTTCAGTTA+AGG | - | chr2.3:5419283-5419302 | MS.gene78405:intron | 40.0% | |
| TTACGCATGACTTAAGGTTC+AGG | + | chr2.3:5418069-5418088 | None:intergenic | 40.0% | |
| TTAGATGAATTTCCTCCCTG+AGG | + | chr2.3:5419639-5419658 | None:intergenic | 40.0% | |
| TTCCTGTGTTTGAATGGTTC+AGG | + | chr2.3:5417918-5417937 | None:intergenic | 40.0% | |
| TTCTCTTCTGTCTGCTTGTT+TGG | + | chr2.3:5417834-5417853 | None:intergenic | 40.0% | |
| TTGAAAGCCAGTTATCACGA+TGG | + | chr2.3:5416936-5416955 | None:intergenic | 40.0% | |
| TTGATCACCATCGTGATAAC+TGG | - | chr2.3:5416926-5416945 | MS.gene78405:intron | 40.0% | |
| ! | CACTCTAGCTCGGTTAAAAA+AGG | - | chr2.3:5419752-5419771 | MS.gene78405:CDS | 40.0% |
| ! | CCTTACACTGCATTTTGCTA+GGG | - | chr2.3:5418515-5418534 | MS.gene78405:intron | 40.0% |
| ! | CTGGCTTTCAATCATGAGTA+TGG | - | chr2.3:5416945-5416964 | MS.gene78405:intron | 40.0% |
| ! | CTTACACTGCATTTTGCTAG+GGG | - | chr2.3:5418516-5418535 | MS.gene78405:intron | 40.0% |
| ! | TGCATACTGAAGGCTTTTCT+TGG | + | chr2.3:5419502-5419521 | None:intergenic | 40.0% |
| !! | CAACTTGTTGATTCCAACTC+TGG | + | chr2.3:5417303-5417322 | None:intergenic | 40.0% |
| !!! | CTTTTTTAACCGAGCTAGAG+TGG | + | chr2.3:5419754-5419773 | None:intergenic | 40.0% |
| !!! | TGGTTTTGGAAGCATGAAGA+TGG | + | chr2.3:5415479-5415498 | None:intergenic | 40.0% |
| ACTCAAGGTGAAGCTAGCAA+GGG | - | chr2.3:5419690-5419709 | MS.gene78405:CDS | 45.0% | |
| AGGAAGGAGAGACACATATC+TGG | - | chr2.3:5417933-5417952 | MS.gene78405:CDS | 45.0% | |
| AGGTCCTTGTTGCATACTGA+AGG | + | chr2.3:5419512-5419531 | None:intergenic | 45.0% | |
| ATAGCGGCCATTTCCTATGT+TGG | + | chr2.3:5418419-5418438 | None:intergenic | 45.0% | |
| ATTCTCACAGGACAATGCAC+AGG | - | chr2.3:5417177-5417196 | MS.gene78405:intron | 45.0% | |
| CAGCATGAGAACAAAGGAAG+AGG | - | chr2.3:5415554-5415573 | MS.gene78405:CDS | 45.0% | |
| CATGAGAACAAAGGAAGAGG+TGG | - | chr2.3:5415557-5415576 | MS.gene78405:CDS | 45.0% | |
| CCCTAGCAAAATGCAGTGTA+AGG | + | chr2.3:5418518-5418537 | None:intergenic | 45.0% | |
| CTCTCCTTCCTGTGTTTGAA+TGG | + | chr2.3:5417924-5417943 | None:intergenic | 45.0% | |
| GACCATCACTTATCCGATGT+TGG | + | chr2.3:5416277-5416296 | None:intergenic | 45.0% | |
| GGTGGTGCAAAGTGATAAAC+CGG | - | chr2.3:5417495-5417514 | MS.gene78405:intron | 45.0% | |
| GTCAGACGGAATTGTAGTGA+TGG | - | chr2.3:5418040-5418059 | MS.gene78405:intron | 45.0% | |
| GTCAGGCCACACATTTAAGA+TGG | + | chr2.3:5416551-5416570 | None:intergenic | 45.0% | |
| GTCCAACATCGGATAAGTGA+TGG | - | chr2.3:5416272-5416291 | MS.gene78405:CDS | 45.0% | |
| TCAAATGAAAGTCCTCAGGG+AGG | - | chr2.3:5419624-5419643 | MS.gene78405:CDS | 45.0% | |
| TTTCAGCGAGGTATACAGCT+CGG | - | chr2.3:5418565-5418584 | MS.gene78405:intron | 45.0% | |
| ! | CAACCAAATGGTTTTCAGCG+AGG | - | chr2.3:5418553-5418572 | MS.gene78405:intron | 45.0% |
| ! | CGATTTTGTGGGGTTGTGTT+AGG | - | chr2.3:5416340-5416359 | MS.gene78405:intron | 45.0% |
| ! | CTGCGGATTGTGGAAAATAG+CGG | + | chr2.3:5416213-5416232 | None:intergenic | 45.0% |
| ! | GATCATCACAAGTTTGGAGC+AGG | + | chr2.3:5418003-5418022 | None:intergenic | 45.0% |
| ! | GCCTTACACTGCATTTTGCT+AGG | - | chr2.3:5418514-5418533 | MS.gene78405:intron | 45.0% |
| ! | TATTCGGAGGCATGCGAATA+TGG | + | chr2.3:5418459-5418478 | None:intergenic | 45.0% |
| ! | TGCGGATTGTGGAAAATAGC+GGG | + | chr2.3:5416212-5416231 | None:intergenic | 45.0% |
| !! | ATAGCGGGCTGTTCAAATTC+CGG | + | chr2.3:5416197-5416216 | None:intergenic | 45.0% |
| AAAGACTCGGCGACCAACAT+AGG | - | chr2.3:5418403-5418422 | MS.gene78405:intron | 50.0% | |
| AACTCCTCCCATAGGCTCTT+CGG | + | chr2.3:5419232-5419251 | None:intergenic | 50.0% | |
| AAGGAAAGCCGAAGAGCCTA+TGG | - | chr2.3:5419221-5419240 | MS.gene78405:intron | 50.0% | |
| ACACCAAGCAACAGCACTCA+AGG | - | chr2.3:5419675-5419694 | MS.gene78405:CDS | 50.0% | |
| AGGAAAGCCGAAGAGCCTAT+GGG | - | chr2.3:5419222-5419241 | MS.gene78405:intron | 50.0% | |
| AGTGGGCCTTTATCGTGTAC+CGG | - | chr2.3:5416175-5416194 | MS.gene78405:intron | 50.0% | |
| ATGCAACAAGGACCTACACG+TGG | - | chr2.3:5419517-5419536 | MS.gene78405:CDS | 50.0% | |
| ATGCAGGCTAAACTCATGGC+TGG | + | chr2.3:5418997-5419016 | None:intergenic | 50.0% | |
| CAAGAACTGGGAAGCTAGTG+CGG | - | chr2.3:5419192-5419211 | MS.gene78405:intron | 50.0% | |
| CACTCAAGGTGAAGCTAGCA+AGG | - | chr2.3:5419689-5419708 | MS.gene78405:CDS | 50.0% | |
| CCGGGTCAGCACTAAAATGA+CGG | - | chr2.3:5416803-5416822 | MS.gene78405:intron | 50.0% | |
| CTAGTGACATCCCTTTGTCC+CGG | + | chr2.3:5419075-5419094 | None:intergenic | 50.0% | |
| GTAGTTGTAAGAGCAAGGCG+TGG | - | chr2.3:5415599-5415618 | MS.gene78405:CDS | 50.0% | |
| TCGGCGACCAACATAGGAAA+TGG | - | chr2.3:5418409-5418428 | MS.gene78405:intron | 50.0% | |
| TGATCACTCACCTGTCTGAG+AGG | - | chr2.3:5418018-5418037 | MS.gene78405:intron | 50.0% | |
| TGTCAACATCTTGCTGCTGC+AGG | - | chr2.3:5418901-5418920 | MS.gene78405:intron | 50.0% | |
| ! | CAAGGGAAACACAAGCGTTG+AGG | - | chr2.3:5419707-5419726 | MS.gene78405:CDS | 50.0% |
| ! | GTGTTGTCAACTGCGGATTG+TGG | + | chr2.3:5416223-5416242 | None:intergenic | 50.0% |
| ! | GTTTTGTGATTTGAGGGGCG+TGG | + | chr2.3:5417757-5417776 | None:intergenic | 50.0% |
| ! | TCACCTTGAGTGCTGTTGCT+TGG | + | chr2.3:5419681-5419700 | None:intergenic | 50.0% |
| !!! | CCGTCATTTTAGTGCTGACC+CGG | + | chr2.3:5416806-5416825 | None:intergenic | 50.0% |
| !!! | CGTCATTTTAGTGCTGACCC+GGG | + | chr2.3:5416805-5416824 | None:intergenic | 50.0% |
| AAAGCCGAAGAGCCTATGGG+AGG | - | chr2.3:5419225-5419244 | MS.gene78405:intron | 55.0% | |
| CACCTGTCTGAGAGGTCAGA+CGG | - | chr2.3:5418026-5418045 | MS.gene78405:intron | 55.0% | |
| CTCTCTCTCTCTTCCGCTGA+TGG | - | chr2.3:5416873-5416892 | MS.gene78405:intron | 55.0% | |
| GAGCCTATGGGAGGAGTTGT+CGG | - | chr2.3:5419234-5419253 | MS.gene78405:intron | 55.0% | |
| TCACCGACAACTCCTCCCAT+AGG | + | chr2.3:5419240-5419259 | None:intergenic | 55.0% | |
| TTCCGTCTGACCTCTCAGAC+AGG | + | chr2.3:5418031-5418050 | None:intergenic | 55.0% | |
| GAAGCTAGTGCGGCTGCACA+AGG | - | chr2.3:5419202-5419221 | MS.gene78405:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 5415434 | 5419788 | 5415434 | ID=MS.gene78405 |
| chr2.3 | mRNA | 5415434 | 5419788 | 5415434 | ID=MS.gene78405.t1;Parent=MS.gene78405 |
| chr2.3 | exon | 5419492 | 5419788 | 5419492 | ID=MS.gene78405.t1.exon1;Parent=MS.gene78405.t1 |
| chr2.3 | CDS | 5419492 | 5419788 | 5419492 | ID=cds.MS.gene78405.t1;Parent=MS.gene78405.t1 |
| chr2.3 | exon | 5417879 | 5418035 | 5417879 | ID=MS.gene78405.t1.exon2;Parent=MS.gene78405.t1 |
| chr2.3 | CDS | 5417879 | 5418035 | 5417879 | ID=cds.MS.gene78405.t1;Parent=MS.gene78405.t1 |
| chr2.3 | exon | 5416267 | 5416299 | 5416267 | ID=MS.gene78405.t1.exon3;Parent=MS.gene78405.t1 |
| chr2.3 | CDS | 5416267 | 5416299 | 5416267 | ID=cds.MS.gene78405.t1;Parent=MS.gene78405.t1 |
| chr2.3 | exon | 5415967 | 5416061 | 5415967 | ID=MS.gene78405.t1.exon4;Parent=MS.gene78405.t1 |
| chr2.3 | CDS | 5415967 | 5416061 | 5415967 | ID=cds.MS.gene78405.t1;Parent=MS.gene78405.t1 |
| chr2.3 | exon | 5415434 | 5415652 | 5415434 | ID=MS.gene78405.t1.exon5;Parent=MS.gene78405.t1 |
| chr2.3 | CDS | 5415434 | 5415652 | 5415434 | ID=cds.MS.gene78405.t1;Parent=MS.gene78405.t1 |
| Gene Sequence |
| Protein sequence |
