AlfalfaGEDB | MS.gene81085

M. sativa cultivar XinJiangDaYe / MS.gene81085

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81085.t1	XP_013444537.1	85.3	68	10	0	1	68	56	123	8.00E-23	115.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81085.t1	Q8LCA1	58.1	74	25	2	1	68	54	127	3.4e-14	78.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81085.t1	I3SWC2	85.3	68	10	0	1	68	56	123	5.8e-23	115.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049173	MS.gene81085	0.809796	1.58E-50	-1.69E-46
MS.gene049217	MS.gene81085	0.805095	1.57E-49	-1.69E-46
MS.gene049285	MS.gene81085	0.804444	2.15E-49	-1.69E-46
MS.gene049320	MS.gene81085	0.811506	6.77E-51	-1.69E-46
MS.gene049614	MS.gene81085	0.820792	5.69E-53	-1.69E-46
MS.gene049661	MS.gene81085	0.809852	1.54E-50	-1.69E-46
MS.gene049805	MS.gene81085	0.813279	2.77E-51	-1.69E-46
MS.gene050076	MS.gene81085	0.801708	7.93E-49	-1.69E-46
MS.gene050333	MS.gene81085	0.806218	9.15E-50	-1.69E-46
MS.gene050432	MS.gene81085	0.817367	3.42E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 10 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGCTCGTGATGTTA+TGG	0.377640	8.4:+70875272	MS.gene81085:CDS
ATTTGATGATAAATATGCAG+TGG	0.570116	8.4:+70875483	MS.gene81085:CDS
GATGTTATGGTTATGGCAAC+AGG	0.470204	8.4:+70875285	MS.gene81085:CDS
TAAATATGCAGTGGGTTCAT+TGG	0.505381	8.4:+70875492	MS.gene81085:CDS
TAGCTAGTGTATTTGCACTA+TGG	0.434144	8.4:+70875518	MS.gene81085:CDS
TCAGTTGAGTCAACTTCTGT+TGG	0.503744	8.4:-70875315	None:intergenic
TGAAGATTCTTAACAAACTC+AGG	0.486308	8.4:-70875342	None:intergenic
TGCTCGTGATGTTATGGTTA+TGG	0.415312	8.4:+70875278	MS.gene81085:CDS
TTTGATGATAAATATGCAGT+GGG	0.562064	8.4:+70875484	MS.gene81085:CDS
TTTGCACTATGGAGCTCAGC+TGG	0.465802	8.4:+70875529	MS.gene81085:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TGAAGATTCTTAACAAACTC+AGG	-	chr8.4:70875345-70875364	None:intergenic	30.0%
	AAAGATTGCTCGTGATGTTA+TGG	+	chr8.4:70875272-70875291	MS.gene81085:CDS	35.0%
	CAAGAAGCTGTATGATACAT+AGG	+	chr8.4:70875363-70875382	MS.gene81085:intron	35.0%
	TAGCTAGTGTATTTGCACTA+TGG	+	chr8.4:70875518-70875537	MS.gene81085:CDS	35.0%
	GATGTTATGGTTATGGCAAC+AGG	+	chr8.4:70875285-70875304	MS.gene81085:CDS	40.0%
	TCAGTTGAGTCAACTTCTGT+TGG	-	chr8.4:70875318-70875337	None:intergenic	40.0%
	TGCTCGTGATGTTATGGTTA+TGG	+	chr8.4:70875278-70875297	MS.gene81085:CDS	40.0%
	TTTGCACTATGGAGCTCAGC+TGG	+	chr8.4:70875529-70875548	MS.gene81085:CDS	50.0%
!	TAGGTTGTTAGAAATTGTAA+TGG	+	chr8.4:70875382-70875401	MS.gene81085:intron	25.0%
!	TATTTTGTTGGCATCATAGT+GGG	+	chr8.4:70875456-70875475	MS.gene81085:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	70875268	70875603	70875268	ID=MS.gene81085
chr8.4	mRNA	70875268	70875603	70875268	ID=MS.gene81085.t1;Parent=MS.gene81085
chr8.4	exon	70875268	70875371	70875268	ID=MS.gene81085.t1.exon1;Parent=MS.gene81085.t1
chr8.4	CDS	70875268	70875371	70875268	ID=cds.MS.gene81085.t1;Parent=MS.gene81085.t1
chr8.4	exon	70875475	70875603	70875475	ID=MS.gene81085.t1.exon2;Parent=MS.gene81085.t1
chr8.4	CDS	70875475	70875603	70875475	ID=cds.MS.gene81085.t1;Parent=MS.gene81085.t1

Gene Sequence	>MS.gene81085 ATCGAAAGATTGCTCGTGATGTTATGGTTATGGCAACAGGAGATGCACCAACAGAAGTTGACTCAACTGAGCTACCTGAGTTTGTTAAGAATCTTCAAGAAGCTGTATGATACATAGGTTGTTAGAAATTGTAATGGAGTTTCTTTTTCCCTTCTTAATGTTTATTATTGACCTAGAATTATGTTATTTATTTTGTTGGCATCATAGTGGGACAAATTTGATGATAAATATGCAGTGGGTTCATTGGTTGTAGCTAGTGTATTTGCACTATGGAGCTCAGCTGGTTTTATATCGGTATTAAGTTATTTAAATGCTAATTTTATTTGCATTATTTGA
Protein sequence	>MS.gene81085.t1 IERLLVMLWLWQQEMHQQKLTQLSYLSLLRIFKKLGTNLMINMQWVHWLULVYLHYGAQLVLYRYUVIUMLILFALF