Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82767.t1 | XP_013450690.1 | 95.2 | 126 | 6 | 0 | 1 | 126 | 1 | 126 | 3.20E-53 | 217.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82767.t1 | I3SM20 | 95.2 | 126 | 6 | 0 | 1 | 126 | 1 | 126 | 2.3e-53 | 217.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene82767 | 0.80138 | 9.25E-49 | -1.69E-46 |
| MS.gene049756 | MS.gene82767 | 0.826058 | 3.34E-54 | -1.69E-46 |
| MS.gene049825 | MS.gene82767 | 0.803591 | 3.24E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene82767 | 0.858262 | 9.30E-63 | -1.69E-46 |
| MS.gene050303 | MS.gene82767 | 0.864448 | 1.21E-64 | -1.69E-46 |
| MS.gene050317 | MS.gene82767 | 0.807208 | 5.65E-50 | -1.69E-46 |
| MS.gene050320 | MS.gene82767 | 0.803758 | 2.99E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene82767 | 0.803428 | 3.50E-49 | -1.69E-46 |
| MS.gene050916 | MS.gene82767 | 0.802798 | 4.73E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene82767 | 0.807122 | 5.90E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene82767 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene051330 | MS.gene82767 | 0.840621 | 7.79E-58 | -1.69E-46 |
| MS.gene05134 | MS.gene82767 | 0.809268 | 2.06E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene82767 | 0.828777 | 7.44E-55 | -1.69E-46 |
| MS.gene051700 | MS.gene82767 | 0.829232 | 5.78E-55 | -1.69E-46 |
| MS.gene051746 | MS.gene82767 | 0.852494 | 4.45E-61 | -1.69E-46 |
| MS.gene051748 | MS.gene82767 | 0.844491 | 7.32E-59 | -1.69E-46 |
| MS.gene05188 | MS.gene82767 | 0.876227 | 1.65E-68 | -1.69E-46 |
| MS.gene051903 | MS.gene82767 | 0.850699 | 1.43E-60 | -1.69E-46 |
| MS.gene051975 | MS.gene82767 | 0.867571 | 1.24E-65 | -1.69E-46 |
| MS.gene052286 | MS.gene82767 | 0.812268 | 4.62E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene82767 | 0.801777 | 7.67E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene82767 | 0.813477 | 2.51E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene82767 | 0.810875 | 9.27E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene82767 | 0.855509 | 6.02E-62 | -1.69E-46 |
| MS.gene053058 | MS.gene82767 | 0.812053 | 5.14E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene82767 | 0.832547 | 8.88E-56 | -1.69E-46 |
| MS.gene053381 | MS.gene82767 | 0.811415 | 7.08E-51 | -1.69E-46 |
| MS.gene05469 | MS.gene82767 | 0.802394 | 5.73E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene82767 | 0.8124 | 4.32E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene82767 | 0.801886 | 7.29E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene82767 | 0.818073 | 2.37E-52 | -1.69E-46 |
| MS.gene055603 | MS.gene82767 | 0.83901 | 2.05E-57 | -1.69E-46 |
| MS.gene055808 | MS.gene82767 | 0.830073 | 3.61E-55 | -1.69E-46 |
| MS.gene056091 | MS.gene82767 | 0.835159 | 1.97E-56 | -1.69E-46 |
| MS.gene056215 | MS.gene82767 | 0.831014 | 2.12E-55 | -1.69E-46 |
| MS.gene056403 | MS.gene82767 | 0.849913 | 2.38E-60 | -1.69E-46 |
| MS.gene056580 | MS.gene82767 | 0.818838 | 1.59E-52 | -1.69E-46 |
| MS.gene056605 | MS.gene82767 | 0.859854 | 3.10E-63 | -1.69E-46 |
| MS.gene056631 | MS.gene82767 | 0.893078 | 8.78E-75 | -1.69E-46 |
| MS.gene05689 | MS.gene82767 | 0.817604 | 3.03E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene82767 | 0.879702 | 1.00E-69 | -1.69E-46 |
| MS.gene057057 | MS.gene82767 | 0.806811 | 6.86E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene82767 | 0.806692 | 7.27E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene82767 | 0.875697 | 2.51E-68 | -1.69E-46 |
| MS.gene057140 | MS.gene82767 | 0.823867 | 1.10E-53 | -1.69E-46 |
| MS.gene057234 | MS.gene82767 | 0.819944 | 8.90E-53 | -1.69E-46 |
| MS.gene057999 | MS.gene82767 | 0.813429 | 2.57E-51 | -1.69E-46 |
| MS.gene058084 | MS.gene82767 | 0.815466 | 9.11E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene82767 | 0.860717 | 1.70E-63 | -1.69E-46 |
| MS.gene058906 | MS.gene82767 | 0.82107 | 4.91E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene82767 | 0.816797 | 4.60E-52 | -1.69E-46 |
| MS.gene059317 | MS.gene82767 | 0.803686 | 3.10E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene82767 | 0.80352 | 3.35E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene82767 | 0.862464 | 4.98E-64 | -1.69E-46 |
| MS.gene06001 | MS.gene82767 | 0.877626 | 5.40E-69 | -1.69E-46 |
| MS.gene06010 | MS.gene82767 | 0.805591 | 1.24E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene82767 | 0.904237 | 1.51E-79 | -1.69E-46 |
| MS.gene060429 | MS.gene82767 | 0.858028 | 1.09E-62 | -1.69E-46 |
| MS.gene060586 | MS.gene82767 | 0.875915 | 2.11E-68 | -1.69E-46 |
| MS.gene060763 | MS.gene82767 | 0.859373 | 4.33E-63 | -1.69E-46 |
| MS.gene060830 | MS.gene82767 | 0.859188 | 4.92E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82767.t1 | MTR_6g004010 | 96.825 | 126 | 4 | 0 | 1 | 126 | 1 | 126 | 8.14e-85 | 243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82767.t1 | AT1G08580 | 54.348 | 92 | 41 | 1 | 1 | 92 | 1 | 91 | 5.30e-28 | 99.8 |
Find 21 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGCAGCACTCTTATCTT+TGG | 0.304089 | 6.1:+69565 | None:intergenic |
| GAGCTTGCGCTTGCGTTTGC+CGG | 0.309830 | 6.1:+69874 | None:intergenic |
| CTTTCTAATCTTAAGCTTGC+CGG | 0.311675 | 6.1:+69913 | None:intergenic |
| CGTTTGCCGGATAGATTAAC+AGG | 0.331339 | 6.1:+69887 | None:intergenic |
| AAGCAGCCTGTTAATCTATC+CGG | 0.490058 | 6.1:-69893 | MS.gene82767:CDS |
| ATCTTAAGCTTGCCGGTGGT+AGG | 0.501198 | 6.1:+69920 | None:intergenic |
| TCTTAAGCTTGCCGGTGGTA+GGG | 0.520973 | 6.1:+69921 | None:intergenic |
| CTTGAAACTTAAACAGCTCA+AGG | 0.522552 | 6.1:-69513 | MS.gene82767:CDS |
| TCAGTTGAAACTTCAGCAGC+AGG | 0.532061 | 6.1:+67903 | None:intergenic |
| TAGCATGGAAGATGTTCAAA+TGG | 0.542838 | 6.1:-69693 | MS.gene82767:CDS |
| CTTAAACAGCTCAAGGGCAA+AGG | 0.565635 | 6.1:-69506 | MS.gene82767:intron |
| GAGAGGAAGAGATTGATTCA+CGG | 0.579715 | 6.1:-69947 | MS.gene82767:CDS |
| AGAGAGTGGCTTGATTAGCA+TGG | 0.596496 | 6.1:-69708 | MS.gene82767:CDS |
| ATTCACGGCGACCCTACCAC+CGG | 0.602526 | 6.1:-69932 | MS.gene82767:CDS |
| AGCGCAAGCTCTTCAAACAA+TGG | 0.614028 | 6.1:-69862 | MS.gene82767:CDS |
| TGAAGTTTCAACTGATGCAA+TGG | 0.630524 | 6.1:-67895 | MS.gene82767:CDS |
| GTTCAAATGGCTGTTGCTGA+AGG | 0.631234 | 6.1:-69680 | MS.gene82767:intron |
| AGTTTCAACTGATGCAATGG+TGG | 0.646685 | 6.1:-67892 | MS.gene82767:CDS |
| GAAGAGCTCTAGTTGCTGAG+AGG | 0.671480 | 6.1:-69964 | MS.gene82767:CDS |
| TTGAAACTTAAACAGCTCAA+GGG | 0.676667 | 6.1:-69512 | MS.gene82767:CDS |
| TCTAATCTTAAGCTTGCCGG+TGG | 0.694898 | 6.1:+69916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCACTTGAAAAAAAA+GGG | - | chr6.1:68346-68365 | MS.gene82767:intron | 15.0% |
| !! | AACATATAATTCAAAAAGAA+AGG | + | chr6.1:69426-69445 | None:intergenic | 15.0% |
| !! | ACATATAATTCAAAAAGAAA+GGG | + | chr6.1:69425-69444 | None:intergenic | 15.0% |
| !! | TAAATTTCACTTGAAAAAAA+AGG | - | chr6.1:68345-68364 | MS.gene82767:intron | 15.0% |
| !!! | AAAACTAATTTCTAGTTATA+AGG | + | chr6.1:68613-68632 | None:intergenic | 15.0% |
| !!! | AGTTGATTTATTTTTTTAAG+TGG | - | chr6.1:68943-68962 | MS.gene82767:intron | 15.0% |
| !!! | ATATTTTGTAAACAATTTGA+TGG | + | chr6.1:69890-69909 | None:intergenic | 15.0% |
| !!! | ATCTGCTTTTAAATATATTT+TGG | - | chr6.1:68836-68855 | MS.gene82767:intron | 15.0% |
| !!! | TTTTAAATATATTTTGGAGT+TGG | - | chr6.1:68842-68861 | MS.gene82767:intron | 15.0% |
| !! | AAATAAAACCTGTTACTATT+TGG | + | chr6.1:69743-69762 | None:intergenic | 20.0% |
| !! | CAACAATAATATAATGTTTG+TGG | - | chr6.1:68748-68767 | MS.gene82767:intron | 20.0% |
| !! | TTAAAATGATTGAAAGATCT+AGG | + | chr6.1:69582-69601 | None:intergenic | 20.0% |
| !!! | ATGTTTTGAATATAGACATA+TGG | - | chr6.1:69787-69806 | MS.gene82767:intron | 20.0% |
| !!! | ATTTTTTGAATTTCTTGTTG+TGG | - | chr6.1:69845-69864 | MS.gene82767:intron | 20.0% |
| !!! | ATTTTTTTAAGTGGTATCTT+TGG | - | chr6.1:68952-68971 | MS.gene82767:intron | 20.0% |
| !!! | TGTTTTGAATATAGACATAT+GGG | - | chr6.1:69788-69807 | MS.gene82767:intron | 20.0% |
| !!! | TTTCACTTTCAATTTGATTT+TGG | + | chr6.1:69711-69730 | None:intergenic | 20.0% |
| !!! | TTTTGTATAAATATGTCTAC+TGG | + | chr6.1:69683-69702 | None:intergenic | 20.0% |
| ! | AAAAAGAAAATGCAGAAACT+AGG | - | chr6.1:69276-69295 | MS.gene82767:intron | 25.0% |
| ! | AAAAGAGCTCATTTATTGTT+TGG | - | chr6.1:68276-68295 | MS.gene82767:intron | 25.0% |
| ! | CAAAATTGAGATTCTATCTA+GGG | - | chr6.1:68667-68686 | MS.gene82767:intron | 25.0% |
| ! | CAATAATATAATGTTTGTGG+TGG | - | chr6.1:68751-68770 | MS.gene82767:intron | 25.0% |
| ! | TCAAAATTGAGATTCTATCT+AGG | - | chr6.1:68666-68685 | MS.gene82767:intron | 25.0% |
| ! | TTCAAAACAACGATTAATCT+AGG | - | chr6.1:68995-69014 | MS.gene82767:intron | 25.0% |
| !! | CTTATCAATTGTTGTTGATA+AGG | - | chr6.1:68777-68796 | MS.gene82767:intron | 25.0% |
| !!! | ATTCACTTTTAAGATTGTAG+TGG | - | chr6.1:69627-69646 | MS.gene82767:intron | 25.0% |
| !!! | ATTTTGACTACCTTGATTAT+TGG | + | chr6.1:68653-68672 | None:intergenic | 25.0% |
| !!! | GATTTTTGACTATCAAAACA+AGG | + | chr6.1:69102-69121 | None:intergenic | 25.0% |
| !!! | GGCAAAGGTAATTTTTTTTT+TGG | - | chr6.1:68391-68410 | MS.gene82767:intron | 25.0% |
| !!! | TTCACTTTTTGATTAACTGA+AGG | - | chr6.1:68135-68154 | MS.gene82767:intron | 25.0% |
| AGGACTCAATTGTAAATCAT+GGG | - | chr6.1:68697-68716 | MS.gene82767:intron | 30.0% | |
| ATATCACATGATATAGCCAA+GGG | - | chr6.1:68889-68908 | MS.gene82767:intron | 30.0% | |
| ATGTGATATCTAAATGAACG+AGG | + | chr6.1:68878-68897 | None:intergenic | 30.0% | |
| CTGCGTAGTTAACTTATAAT+TGG | - | chr6.1:69911-69930 | MS.gene82767:CDS | 30.0% | |
| CTTATCAACCAAATAGTAAC+AGG | - | chr6.1:69732-69751 | MS.gene82767:intron | 30.0% | |
| GAGAATAAATCTGTTACAGA+GGG | + | chr6.1:69403-69422 | None:intergenic | 30.0% | |
| TAATATAATGTTTGTGGTGG+AGG | - | chr6.1:68754-68773 | MS.gene82767:intron | 30.0% | |
| TAGCCACAAACATTAGAATA+GGG | + | chr6.1:69199-69218 | None:intergenic | 30.0% | |
| TATTCTAATGTTTGTGGCTA+AGG | - | chr6.1:69199-69218 | MS.gene82767:intron | 30.0% | |
| TGTGATATCTAAATGAACGA+GGG | + | chr6.1:68877-68896 | None:intergenic | 30.0% | |
| TTAGCCACAAACATTAGAAT+AGG | + | chr6.1:69200-69219 | None:intergenic | 30.0% | |
| TTGAAACTTAAACAGCTCAA+GGG | - | chr6.1:68370-68389 | MS.gene82767:intron | 30.0% | |
| ! | AACGATTAATCTAGGATTCT+TGG | - | chr6.1:69003-69022 | MS.gene82767:intron | 30.0% |
| ! | AGGAACATCAGATTTTCTTT+TGG | + | chr6.1:69962-69981 | None:intergenic | 30.0% |
| ! | CTGTTACTATTTGGTTGATA+AGG | + | chr6.1:69734-69753 | None:intergenic | 30.0% |
| ! | CTTATAATTGGTGTTTGTTG+TGG | - | chr6.1:69923-69942 | MS.gene82767:CDS | 30.0% |
| ! | GAGCTCTTTTGTTAAACTAA+AGG | + | chr6.1:68266-68285 | None:intergenic | 30.0% |
| !! | TCAAATAATTATTGGTGTCG+AGG | + | chr6.1:68463-68482 | None:intergenic | 30.0% |
| !!! | TTTTGGTTCTGTTTTGCATT+TGG | - | chr6.1:68408-68427 | MS.gene82767:intron | 30.0% |
| AACATTAGAATAGGGACCAA+AGG | + | chr6.1:69191-69210 | None:intergenic | 35.0% | |
| AAGGAAATTTGAATCAAGCC+AGG | + | chr6.1:68594-68613 | None:intergenic | 35.0% | |
| AGTAGATTTCAGCTTCTCAT+TGG | - | chr6.1:69546-69565 | MS.gene82767:CDS | 35.0% | |
| CTATACGCTGAAACTGAAAA+TGG | - | chr6.1:69341-69360 | MS.gene82767:intron | 35.0% | |
| CTTGAAACTTAAACAGCTCA+AGG | - | chr6.1:68369-68388 | MS.gene82767:intron | 35.0% | |
| CTTTCTAATCTTAAGCTTGC+CGG | + | chr6.1:67972-67991 | None:intergenic | 35.0% | |
| GAGGACTCAATTGTAAATCA+TGG | - | chr6.1:68696-68715 | MS.gene82767:intron | 35.0% | |
| GATATCACATGATATAGCCA+AGG | - | chr6.1:68888-68907 | MS.gene82767:intron | 35.0% | |
| GGAGAATAAATCTGTTACAG+AGG | + | chr6.1:69404-69423 | None:intergenic | 35.0% | |
| TAGCATGGAAGATGTTCAAA+TGG | - | chr6.1:68189-68208 | MS.gene82767:intron | 35.0% | |
| TATCACATGATATAGCCAAG+GGG | - | chr6.1:68890-68909 | MS.gene82767:intron | 35.0% | |
| TGAAGTTTCAACTGATGCAA+TGG | - | chr6.1:69987-70006 | MS.gene82767:CDS | 35.0% | |
| ! | TGTTTGCTGACCAATAATCA+AGG | - | chr6.1:68640-68659 | MS.gene82767:intron | 35.0% |
| !! | ACTCTTAAATTGATAGCGCA+CGG | + | chr6.1:68231-68250 | None:intergenic | 35.0% |
| !! | GGGAAGTGTCAATGTTAATT+TGG | - | chr6.1:69032-69051 | MS.gene82767:intron | 35.0% |
| !! | TCTACTGGTTCTACATGTTA+TGG | + | chr6.1:69668-69687 | None:intergenic | 35.0% |
| !!! | ATTGTTTGGTTTTGTGAGCA+GGG | - | chr6.1:68290-68309 | MS.gene82767:intron | 35.0% |
| !!! | TATTGTTTGGTTTTGTGAGC+AGG | - | chr6.1:68289-68308 | MS.gene82767:intron | 35.0% |
| AAGCAGCCTGTTAATCTATC+CGG | - | chr6.1:67989-68008 | MS.gene82767:intron | 40.0% | |
| AGATGCAGCACTCTTATCTT+TGG | + | chr6.1:68320-68339 | None:intergenic | 40.0% | |
| AGTTTCAACTGATGCAATGG+TGG | - | chr6.1:69990-70009 | MS.gene82767:CDS | 40.0% | |
| ATTAGAATAGGGACCAAAGG+AGG | + | chr6.1:69188-69207 | None:intergenic | 40.0% | |
| CAAAAAGATGCTGTAGAGAG+TGG | - | chr6.1:68160-68179 | MS.gene82767:intron | 40.0% | |
| CATGGGATTGTAACATAGCA+TGG | - | chr6.1:68714-68733 | MS.gene82767:intron | 40.0% | |
| CCATCACTCTTGAAGACTAA+TGG | + | chr6.1:69131-69150 | None:intergenic | 40.0% | |
| CTGTTACAGAGGGTAATTGA+GGG | + | chr6.1:69393-69412 | None:intergenic | 40.0% | |
| GATTTCAGCTTCTCATTGGA+TGG | - | chr6.1:69550-69569 | MS.gene82767:CDS | 40.0% | |
| GGTCCCTATTCTAATGTTTG+TGG | - | chr6.1:69193-69212 | MS.gene82767:intron | 40.0% | |
| GTTGATGCAGTGATTACACA+TGG | - | chr6.1:69443-69462 | MS.gene82767:intron | 40.0% | |
| TCTGTTACAGAGGGTAATTG+AGG | + | chr6.1:69394-69413 | None:intergenic | 40.0% | |
| TGTTACAGAGGGTAATTGAG+GGG | + | chr6.1:69392-69411 | None:intergenic | 40.0% | |
| ! | AATCTAGGATTCTTGGATCG+AGG | - | chr6.1:69010-69029 | MS.gene82767:intron | 40.0% |
| ! | ATCTAGGATTCTTGGATCGA+GGG | - | chr6.1:69011-69030 | MS.gene82767:intron | 40.0% |
| ! | ATTCTATCTAGGGTCAAGAG+AGG | - | chr6.1:68677-68696 | MS.gene82767:intron | 40.0% |
| ! | GAGAGGAAGAGATTGATTCA+CGG | - | chr6.1:67935-67954 | MS.gene82767:intron | 40.0% |
| ! | TGGTTCTACATGTTATGGTG+CGG | + | chr6.1:69663-69682 | None:intergenic | 40.0% |
| ! | TTAGTCTTCAAGAGTGATGG+TGG | - | chr6.1:69131-69150 | MS.gene82767:intron | 40.0% |
| !! | CCATTAGTCTTCAAGAGTGA+TGG | - | chr6.1:69128-69147 | MS.gene82767:intron | 40.0% |
| !! | GAGTTATGAAAGCACCGATA+TGG | - | chr6.1:68434-68453 | MS.gene82767:intron | 40.0% |
| !! | GGTGTTTGTTGTGGCATATA+GGG | - | chr6.1:69932-69951 | MS.gene82767:CDS | 40.0% |
| !! | TGGTGTTTGTTGTGGCATAT+AGG | - | chr6.1:69931-69950 | MS.gene82767:CDS | 40.0% |
| !!! | TTGTTTGGTTTTGTGAGCAG+GGG | - | chr6.1:68291-68310 | MS.gene82767:intron | 40.0% |
| ACAAAGCAGCAAGAATGCTC+TGG | + | chr6.1:69492-69511 | None:intergenic | 45.0% | |
| ACTGCGTTGTTGTGAACTAG+CGG | - | chr6.1:69521-69540 | MS.gene82767:CDS | 45.0% | |
| AGAGAGTGGCTTGATTAGCA+TGG | - | chr6.1:68174-68193 | MS.gene82767:intron | 45.0% | |
| AGCGCAAGCTCTTCAAACAA+TGG | - | chr6.1:68020-68039 | MS.gene82767:intron | 45.0% | |
| AGTGTACACATGGCTGACAT+TGG | - | chr6.1:68521-68540 | MS.gene82767:intron | 45.0% | |
| AGTTCACAACAACGCAGTGT+AGG | + | chr6.1:69519-69538 | None:intergenic | 45.0% | |
| CAACTATTAGCGACCTCCTT+TGG | - | chr6.1:69172-69191 | MS.gene82767:intron | 45.0% | |
| CACACATGTCAGTGTACACA+TGG | - | chr6.1:68511-68530 | MS.gene82767:intron | 45.0% | |
| CAGTTTCAGCGTATAGCTTG+TGG | + | chr6.1:69337-69356 | None:intergenic | 45.0% | |
| CATGTGTACACTGACATGTG+TGG | + | chr6.1:68513-68532 | None:intergenic | 45.0% | |
| CGTTTGCCGGATAGATTAAC+AGG | + | chr6.1:67998-68017 | None:intergenic | 45.0% | |
| CTGCATAGATTGAGTCTACC+TGG | - | chr6.1:68573-68592 | MS.gene82767:intron | 45.0% | |
| CTTAAACAGCTCAAGGGCAA+AGG | - | chr6.1:68376-68395 | MS.gene82767:intron | 45.0% | |
| GTGTACACATGGCTGACATT+GGG | - | chr6.1:68522-68541 | MS.gene82767:intron | 45.0% | |
| GTTCAAATGGCTGTTGCTGA+AGG | - | chr6.1:68202-68221 | MS.gene82767:intron | 45.0% | |
| GTTCACAACAACGCAGTGTA+GGG | + | chr6.1:69518-69537 | None:intergenic | 45.0% | |
| TCAGTTGAAACTTCAGCAGC+AGG | + | chr6.1:69982-70001 | None:intergenic | 45.0% | |
| TCTAATCTTAAGCTTGCCGG+TGG | + | chr6.1:67969-67988 | None:intergenic | 45.0% | |
| TCTACATGTTATGGTGCGGT+AGG | + | chr6.1:69659-69678 | None:intergenic | 45.0% | |
| ! | TCTAGGATTCTTGGATCGAG+GGG | - | chr6.1:69012-69031 | MS.gene82767:intron | 45.0% |
| !! | TCTTCAAGAGTGATGGTGGT+TGG | - | chr6.1:69135-69154 | MS.gene82767:intron | 45.0% |
| !!! | TTTTTTTTTCAAATAATTAT+TGG | + | chr6.1:68471-68490 | None:intergenic | 5.0% |
| ACAGAGGGTAATTGAGGGGA+GGG | + | chr6.1:69388-69407 | None:intergenic | 50.0% | |
| ATCTTAAGCTTGCCGGTGGT+AGG | + | chr6.1:67965-67984 | None:intergenic | 50.0% | |
| ATGGCATGCTACCAACTGAG+AGG | - | chr6.1:69462-69481 | MS.gene82767:intron | 50.0% | |
| TACAGAGGGTAATTGAGGGG+AGG | + | chr6.1:69389-69408 | None:intergenic | 50.0% | |
| TCTTAAGCTTGCCGGTGGTA+GGG | + | chr6.1:67964-67983 | None:intergenic | 50.0% | |
| TGTGGCTAAGGCTGCACATT+TGG | - | chr6.1:69211-69230 | MS.gene82767:intron | 50.0% | |
| ! | GAAGAGCTCTAGTTGCTGAG+AGG | - | chr6.1:67918-67937 | MS.gene82767:CDS | 50.0% |
| ! | GCTCTGGTTTACCTCTCAGT+TGG | + | chr6.1:69476-69495 | None:intergenic | 50.0% |
| AGAGGGTAATTGAGGGGAGG+GGG | + | chr6.1:69386-69405 | None:intergenic | 55.0% | |
| ATTGGGCACACGCCATCGAT+CGG | - | chr6.1:68539-68558 | MS.gene82767:intron | 55.0% | |
| CAGAGGGTAATTGAGGGGAG+GGG | + | chr6.1:69387-69406 | None:intergenic | 55.0% | |
| GATATAGCCAAGGGGCGAGT+GGG | - | chr6.1:68898-68917 | MS.gene82767:intron | 55.0% | |
| GCACCAACACTTCCGATCGA+TGG | + | chr6.1:68554-68573 | None:intergenic | 55.0% | |
| GGCGAGTGGGTCTCTACATA+GGG | - | chr6.1:68911-68930 | MS.gene82767:intron | 55.0% | |
| TGATATAGCCAAGGGGCGAG+TGG | - | chr6.1:68897-68916 | MS.gene82767:intron | 55.0% | |
| ! | ACGCCATCGATCGGAAGTGT+TGG | - | chr6.1:68548-68567 | MS.gene82767:intron | 55.0% |
| ! | TGGTGTCGAGGCGTCCATAT+CGG | + | chr6.1:68451-68470 | None:intergenic | 55.0% |
| ATTCACGGCGACCCTACCAC+CGG | - | chr6.1:67950-67969 | MS.gene82767:intron | 60.0% | |
| GAGCTTGCGCTTGCGTTTGC+CGG | + | chr6.1:68011-68030 | None:intergenic | 60.0% | |
| GGGCGAGTGGGTCTCTACAT+AGG | - | chr6.1:68910-68929 | MS.gene82767:intron | 60.0% | |
| GTAATTGAGGGGAGGGGGCT+GGG | + | chr6.1:69381-69400 | None:intergenic | 60.0% | |
| TAATTGAGGGGAGGGGGCTG+GGG | + | chr6.1:69380-69399 | None:intergenic | 60.0% | |
| GGTAATTGAGGGGAGGGGGC+TGG | + | chr6.1:69382-69401 | None:intergenic | 65.0% | |
| GTAGAGACCCACTCGCCCCT+TGG | + | chr6.1:68908-68927 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 67887 | 70017 | 67887 | ID=MS.gene82767 |
| chr6.1 | mRNA | 67887 | 70017 | 67887 | ID=MS.gene82767.t1;Parent=MS.gene82767 |
| chr6.1 | exon | 69856 | 70017 | 69856 | ID=MS.gene82767.t1.exon1;Parent=MS.gene82767.t1 |
| chr6.1 | CDS | 69856 | 70017 | 69856 | ID=cds.MS.gene82767.t1;Parent=MS.gene82767.t1 |
| chr6.1 | exon | 69681 | 69747 | 69681 | ID=MS.gene82767.t1.exon2;Parent=MS.gene82767.t1 |
| chr6.1 | CDS | 69681 | 69747 | 69681 | ID=cds.MS.gene82767.t1;Parent=MS.gene82767.t1 |
| chr6.1 | exon | 69507 | 69593 | 69507 | ID=MS.gene82767.t1.exon3;Parent=MS.gene82767.t1 |
| chr6.1 | CDS | 69507 | 69593 | 69507 | ID=cds.MS.gene82767.t1;Parent=MS.gene82767.t1 |
| chr6.1 | exon | 67887 | 67951 | 67887 | ID=MS.gene82767.t1.exon4;Parent=MS.gene82767.t1 |
| chr6.1 | CDS | 67887 | 67951 | 67887 | ID=cds.MS.gene82767.t1;Parent=MS.gene82767.t1 |
| Gene Sequence |
| Protein sequence |
