Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84193.t1 | XP_013449138.1 | 86.8 | 280 | 37 | 0 | 1 | 280 | 1 | 280 | 2.20E-142 | 515 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84193.t1 | Q9SRM5 | 59.2 | 250 | 100 | 2 | 32 | 279 | 6 | 255 | 1.0e-87 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84193.t1 | A0A072UBE2 | 86.8 | 280 | 37 | 0 | 1 | 280 | 1 | 280 | 1.6e-142 | 515.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene84193 | -0.833634 | 4.76E-56 | -1.69E-46 |
| MS.gene04932 | MS.gene84193 | 0.810662 | 1.03E-50 | -1.69E-46 |
| MS.gene049549 | MS.gene84193 | 0.830649 | 2.61E-55 | -1.69E-46 |
| MS.gene049611 | MS.gene84193 | 0.818353 | 2.05E-52 | -1.69E-46 |
| MS.gene049634 | MS.gene84193 | 0.814677 | 1.36E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene84193 | 0.810422 | 1.16E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene84193 | -0.802272 | 6.07E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene84193 | -0.815437 | 9.25E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene84193 | -0.80054 | 1.37E-48 | -1.69E-46 |
| MS.gene050809 | MS.gene84193 | 0.816268 | 6.03E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene84193 | -0.808726 | 2.69E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene84193 | -0.808424 | 3.12E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene84193 | 0.833288 | 5.81E-56 | -1.69E-46 |
| MS.gene051127 | MS.gene84193 | 0.816914 | 4.33E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene84193 | 0.823774 | 1.16E-53 | -1.69E-46 |
| MS.gene051364 | MS.gene84193 | 0.810026 | 1.41E-50 | -1.69E-46 |
| MS.gene051366 | MS.gene84193 | 0.809163 | 2.17E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene84193 | 0.801116 | 1.05E-48 | -1.69E-46 |
| MS.gene051874 | MS.gene84193 | -0.831384 | 1.72E-55 | -1.69E-46 |
| MS.gene051973 | MS.gene84193 | 0.804352 | 2.25E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene84193 | 0.81659 | 5.11E-52 | -1.69E-46 |
| MS.gene05240 | MS.gene84193 | 0.850635 | 1.49E-60 | -1.69E-46 |
| MS.gene05244 | MS.gene84193 | 0.811999 | 5.29E-51 | -1.69E-46 |
| MS.gene052606 | MS.gene84193 | 0.828895 | 6.97E-55 | -1.69E-46 |
| MS.gene052702 | MS.gene84193 | 0.813289 | 2.76E-51 | -1.69E-46 |
| MS.gene052805 | MS.gene84193 | 0.83597 | 1.23E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene84193 | 0.830724 | 2.50E-55 | -1.69E-46 |
| MS.gene053479 | MS.gene84193 | -0.816902 | 4.35E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene84193 | -0.805759 | 1.14E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene84193 | 0.812982 | 3.22E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene84193 | -0.810249 | 1.27E-50 | -1.69E-46 |
| MS.gene054146 | MS.gene84193 | 0.8163 | 5.94E-52 | -1.69E-46 |
| MS.gene054181 | MS.gene84193 | 0.821409 | 4.10E-53 | -1.69E-46 |
| MS.gene054290 | MS.gene84193 | 0.824116 | 9.61E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene84193 | 0.80345 | 3.47E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene84193 | 0.802761 | 4.81E-49 | -1.69E-46 |
| MS.gene05483 | MS.gene84193 | 0.800218 | 1.60E-48 | -1.69E-46 |
| MS.gene055154 | MS.gene84193 | 0.808014 | 3.81E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene84193 | -0.804608 | 1.99E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene84193 | -0.816615 | 5.05E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene84193 | -0.809819 | 1.57E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene84193 | -0.807863 | 4.11E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene84193 | -0.809959 | 1.46E-50 | -1.69E-46 |
| MS.gene056218 | MS.gene84193 | 0.820803 | 5.65E-53 | -1.69E-46 |
| MS.gene056224 | MS.gene84193 | 0.813017 | 3.17E-51 | -1.69E-46 |
| MS.gene056359 | MS.gene84193 | 0.813626 | 2.33E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene84193 | -0.806915 | 6.52E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene84193 | 0.830631 | 2.63E-55 | -1.69E-46 |
| MS.gene056591 | MS.gene84193 | 0.830263 | 3.24E-55 | -1.69E-46 |
| MS.gene056688 | MS.gene84193 | 0.803999 | 2.67E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene84193 | 0.809047 | 2.30E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene84193 | 0.829008 | 6.55E-55 | -1.69E-46 |
| MS.gene056748 | MS.gene84193 | 0.815771 | 7.79E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene84193 | 0.859712 | 3.42E-63 | -1.69E-46 |
| MS.gene056920 | MS.gene84193 | 0.802127 | 6.50E-49 | -1.69E-46 |
| MS.gene056988 | MS.gene84193 | 0.800024 | 1.75E-48 | -1.69E-46 |
| MS.gene057261 | MS.gene84193 | 0.804783 | 1.83E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene84193 | 0.832815 | 7.62E-56 | -1.69E-46 |
| MS.gene057768 | MS.gene84193 | 0.817384 | 3.39E-52 | -1.69E-46 |
| MS.gene058067 | MS.gene84193 | 0.803564 | 3.28E-49 | -1.69E-46 |
| MS.gene058068 | MS.gene84193 | 0.82365 | 1.24E-53 | -1.69E-46 |
| MS.gene058099 | MS.gene84193 | 0.832288 | 1.03E-55 | -1.69E-46 |
| MS.gene058117 | MS.gene84193 | 0.821324 | 4.29E-53 | -1.69E-46 |
| MS.gene058268 | MS.gene84193 | 0.805576 | 1.25E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene84193 | 0.808669 | 2.76E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene84193 | -0.804193 | 2.43E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene84193 | 0.807396 | 5.16E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene84193 | -0.805213 | 1.49E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene84193 | 0.813801 | 2.13E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene84193 | -0.8294 | 5.26E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene84193 | -0.807369 | 5.23E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene84193 | -0.823039 | 1.72E-53 | -1.69E-46 |
| MS.gene059315 | MS.gene84193 | 0.816414 | 5.60E-52 | -1.69E-46 |
| MS.gene059402 | MS.gene84193 | 0.811975 | 5.35E-51 | -1.69E-46 |
| MS.gene059953 | MS.gene84193 | 0.83654 | 8.82E-57 | -1.69E-46 |
| MS.gene059955 | MS.gene84193 | 0.836177 | 1.09E-56 | -1.69E-46 |
| MS.gene060087 | MS.gene84193 | 0.809515 | 1.82E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene84193 | 0.820707 | 5.95E-53 | -1.69E-46 |
| MS.gene060593 | MS.gene84193 | 0.82824 | 1.00E-54 | -1.69E-46 |
| MS.gene061044 | MS.gene84193 | 0.809794 | 1.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84193.t1 | MTR_7g068500 | 86.786 | 280 | 37 | 0 | 1 | 280 | 1 | 280 | 0.0 | 511 |
| MS.gene84193.t1 | MTR_7g068460 | 85.393 | 267 | 39 | 0 | 14 | 280 | 15 | 281 | 1.06e-173 | 481 |
| MS.gene84193.t1 | MTR_7g068470 | 87.149 | 249 | 31 | 1 | 32 | 280 | 2 | 249 | 3.31e-163 | 453 |
| MS.gene84193.t1 | MTR_7g068470 | 85.944 | 249 | 30 | 2 | 32 | 280 | 2 | 245 | 7.25e-159 | 442 |
| MS.gene84193.t1 | MTR_4g016510 | 67.331 | 251 | 80 | 2 | 31 | 279 | 5 | 255 | 3.41e-124 | 355 |
| MS.gene84193.t1 | MTR_7g068530 | 67.600 | 250 | 78 | 3 | 31 | 279 | 5 | 252 | 1.86e-122 | 350 |
| MS.gene84193.t1 | MTR_7g068450 | 65.217 | 253 | 83 | 3 | 32 | 279 | 2 | 254 | 1.99e-118 | 340 |
| MS.gene84193.t1 | MTR_3g070460 | 58.498 | 253 | 103 | 2 | 29 | 279 | 3 | 255 | 9.84e-110 | 318 |
| MS.gene84193.t1 | MTR_7g068550 | 61.506 | 239 | 90 | 2 | 32 | 269 | 6 | 243 | 3.28e-105 | 306 |
| MS.gene84193.t1 | MTR_7g068520 | 51.793 | 251 | 24 | 2 | 30 | 280 | 1 | 154 | 1.22e-76 | 230 |
| MS.gene84193.t1 | MTR_4g016500 | 46.364 | 220 | 48 | 4 | 60 | 279 | 277 | 426 | 1.57e-53 | 180 |
| MS.gene84193.t1 | MTR_2g015510 | 35.545 | 211 | 128 | 4 | 31 | 233 | 4 | 214 | 1.27e-41 | 144 |
| MS.gene84193.t1 | MTR_2g015500 | 34.906 | 212 | 128 | 4 | 32 | 233 | 4 | 215 | 1.41e-41 | 143 |
| MS.gene84193.t1 | MTR_4g105680 | 31.100 | 209 | 133 | 4 | 54 | 256 | 54 | 257 | 8.33e-28 | 108 |
| MS.gene84193.t1 | MTR_2g015480 | 29.534 | 193 | 112 | 8 | 50 | 233 | 76 | 253 | 9.50e-21 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84193.t1 | AT3G11210 | 58.964 | 251 | 101 | 2 | 31 | 279 | 5 | 255 | 4.10e-111 | 321 |
| MS.gene84193.t1 | AT2G38180 | 60.699 | 229 | 80 | 4 | 32 | 257 | 6 | 227 | 3.74e-99 | 293 |
| MS.gene84193.t1 | AT5G45920 | 39.336 | 211 | 121 | 4 | 30 | 233 | 1 | 211 | 2.62e-47 | 158 |
| MS.gene84193.t1 | AT5G45920 | 39.336 | 211 | 121 | 4 | 30 | 233 | 1 | 211 | 2.62e-47 | 158 |
| MS.gene84193.t1 | AT5G62930 | 34.483 | 232 | 141 | 4 | 32 | 256 | 2 | 229 | 2.19e-45 | 153 |
| MS.gene84193.t1 | AT5G62930 | 33.878 | 245 | 146 | 5 | 27 | 264 | 23 | 258 | 2.66e-45 | 154 |
| MS.gene84193.t1 | AT5G45920 | 39.037 | 187 | 107 | 4 | 30 | 209 | 1 | 187 | 1.81e-39 | 137 |
| MS.gene84193.t1 | AT5G45920 | 39.037 | 187 | 107 | 4 | 30 | 209 | 1 | 187 | 1.81e-39 | 137 |
| MS.gene84193.t1 | AT5G62930 | 29.944 | 177 | 109 | 5 | 94 | 264 | 7 | 174 | 2.71e-24 | 97.1 |
Find 60 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTAATGCCAGCTGAATT+TGG | 0.274855 | 7.1:+33406641 | MS.gene84193:CDS |
| AATGAGCTCAGTGATGAATT+TGG | 0.285385 | 7.1:+33406260 | MS.gene84193:intron |
| AAGGCGTGCTGTGCAAGTTT+TGG | 0.302736 | 7.1:+33405429 | MS.gene84193:CDS |
| TATGATATGGTTTCTCTTGA+TGG | 0.317939 | 7.1:+33406677 | MS.gene84193:CDS |
| AGAAGATTCACCTTATGATA+TGG | 0.335446 | 7.1:+33406664 | MS.gene84193:CDS |
| CGATCAACGAGGCACAAATT+AGG | 0.337436 | 7.1:+33406137 | MS.gene84193:CDS |
| AATATATTCAGAAGCGTGTT+TGG | 0.360952 | 7.1:+33406313 | MS.gene84193:CDS |
| TGGTCCTCATGTACCATTGC+AGG | 0.370383 | 7.1:+33405760 | MS.gene84193:CDS |
| AGGCCTAAAATTGTGTTGTT+TGG | 0.380075 | 7.1:+33405167 | MS.gene84193:CDS |
| GTTCAATACAGTTGCTATGA+AGG | 0.383262 | 7.1:+33405200 | MS.gene84193:CDS |
| GAAGATTGCTACTCATATAA+TGG | 0.403964 | 7.1:+33405802 | MS.gene84193:CDS |
| ATACAGTTGCTATGAAGGTT+GGG | 0.406406 | 7.1:+33405205 | MS.gene84193:CDS |
| AGTGGGAACCAAGTCTATAT+TGG | 0.407643 | 7.1:+33406618 | MS.gene84193:CDS |
| GGACCAAGGCCACTTGGATA+TGG | 0.410264 | 7.1:-33405743 | None:intergenic |
| CGTCCATATCCAAGTGGCCT+TGG | 0.417610 | 7.1:+33405740 | MS.gene84193:CDS |
| CACTCTACATCTTGAGGAAA+AGG | 0.437938 | 7.1:-33406728 | None:intergenic |
| TGCCATTGAGCAACCATCAT+TGG | 0.437939 | 7.1:+33405685 | MS.gene84193:CDS |
| GTGTCGTGAGATGAAAATAA+AGG | 0.443191 | 7.1:+33406340 | MS.gene84193:CDS |
| ATGAGCTCAGTGATGAATTT+GGG | 0.445759 | 7.1:+33406261 | MS.gene84193:intron |
| TAATCCGAGTCTTATGTGAT+AGG | 0.452496 | 7.1:-33406096 | None:intergenic |
| AATACAGTTGCTATGAAGGT+TGG | 0.465220 | 7.1:+33405204 | MS.gene84193:CDS |
| ACCTTTCAATCCTCTCTCTC+TGG | 0.465769 | 7.1:+33405021 | MS.gene84193:CDS |
| CTAATTTGTGCCTCGTTGAT+CGG | 0.468483 | 7.1:-33406136 | None:intergenic |
| TCAAGAGAAACCATATCATA+AGG | 0.483799 | 7.1:-33406674 | None:intergenic |
| ATGATATGGTTTCTCTTGAT+GGG | 0.487292 | 7.1:+33406678 | MS.gene84193:CDS |
| GATATGCTGCTTGGAATTCA+AGG | 0.495898 | 7.1:+33405410 | MS.gene84193:CDS |
| TTCTCACTTGTACGCTCGTA+AGG | 0.496236 | 7.1:+33405238 | MS.gene84193:CDS |
| CAATTCAGAAAAGAGATGAT+TGG | 0.498393 | 7.1:+33406381 | MS.gene84193:CDS |
| CACCAATGATGGTTGCTCAA+TGG | 0.505270 | 7.1:-33405687 | None:intergenic |
| GGGTTCTTCCATTGCACAGT+GGG | 0.510655 | 7.1:+33405132 | MS.gene84193:CDS |
| TTGGTGATTGTGTACTTTGG+TGG | 0.528440 | 7.1:+33405704 | MS.gene84193:CDS |
| AAGTACACAATCACCAATGA+TGG | 0.528971 | 7.1:-33405698 | None:intergenic |
| GAATCTTCTCCAAATTCAGC+TGG | 0.530268 | 7.1:-33406650 | None:intergenic |
| AAGGTTGGGGAGCAATAAAG+AGG | 0.532708 | 7.1:+33405111 | MS.gene84193:intron |
| AGGAATACATAGAAAATATG+AGG | 0.533134 | 7.1:+33405780 | MS.gene84193:CDS |
| ACATGAGGACCAAGGCCACT+TGG | 0.533170 | 7.1:-33405749 | None:intergenic |
| GTTCTTCCATTGCACAGTGG+GGG | 0.534821 | 7.1:+33405134 | MS.gene84193:CDS |
| ACCAGAGAGAGAGGATTGAA+AGG | 0.536372 | 7.1:-33405022 | None:intergenic |
| GGAGTTCATCTATCAACTGT+GGG | 0.542274 | 7.1:+33406548 | MS.gene84193:CDS |
| TCATTGGTGATTGTGTACTT+TGG | 0.556007 | 7.1:+33405701 | MS.gene84193:CDS |
| TACAGTTGCTATGAAGGTTG+GGG | 0.558888 | 7.1:+33405206 | MS.gene84193:CDS |
| GAGAAAGTTACCAGAGAGAG+AGG | 0.562172 | 7.1:-33405031 | None:intergenic |
| CAAGGCCACTCTACATCTTG+AGG | 0.564026 | 7.1:-33406734 | None:intergenic |
| AATTGCAGACCACATATCAA+TGG | 0.566695 | 7.1:-33406363 | None:intergenic |
| ATTAACTTCCAATATAGACT+TGG | 0.567442 | 7.1:-33406626 | None:intergenic |
| TGTCATAAAAGAAGCAGAGT+GGG | 0.567830 | 7.1:+33406601 | MS.gene84193:CDS |
| AAATAAAGGCCATTGATATG+TGG | 0.571676 | 7.1:+33406354 | MS.gene84193:CDS |
| ATTTGTGCCTCGTTGATCGG+AGG | 0.599779 | 7.1:-33406133 | None:intergenic |
| ATCTTGAGGAAAAGGCACAT+TGG | 0.602253 | 7.1:-33406720 | None:intergenic |
| TATTCCTGCAATGGTACATG+AGG | 0.621940 | 7.1:-33405764 | None:intergenic |
| TGGAGTTCATCTATCAACTG+TGG | 0.644432 | 7.1:+33406547 | MS.gene84193:CDS |
| GGTTCTTCCATTGCACAGTG+GGG | 0.662401 | 7.1:+33405133 | MS.gene84193:CDS |
| ATGTCATAAAAGAAGCAGAG+TGG | 0.667998 | 7.1:+33406600 | MS.gene84193:CDS |
| AGAGCCTATCACATAAGACT+CGG | 0.677637 | 7.1:+33406092 | MS.gene84193:intron |
| AGGGTTCTTCCATTGCACAG+TGG | 0.698129 | 7.1:+33405131 | MS.gene84193:CDS |
| TGTATTCGTCCATATCCAAG+TGG | 0.698167 | 7.1:+33405734 | MS.gene84193:CDS |
| AGGTTGGGGAGCAATAAAGA+GGG | 0.711573 | 7.1:+33405112 | MS.gene84193:intron |
| GAGTTCATCTATCAACTGTG+GGG | 0.725947 | 7.1:+33406549 | MS.gene84193:CDS |
| CAGTAGTCCTCCGATCAACG+AGG | 0.731081 | 7.1:+33406126 | MS.gene84193:CDS |
| GCAATGGTACATGAGGACCA+AGG | 0.776215 | 7.1:-33405757 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGATTATACATTTTTTAA+GGG | - | chr7.1:33406186-33406205 | None:intergenic | 10.0% |
| !!! | AAATTTAAAACATTTTAGTT+AGG | - | chr7.1:33406480-33406499 | None:intergenic | 10.0% |
| !!! | AACTAATTATTGATAATAAA+TGG | - | chr7.1:33406009-33406028 | None:intergenic | 10.0% |
| !!! | TAATTTAAAACATTTTAGTT+AGG | - | chr7.1:33406449-33406468 | None:intergenic | 10.0% |
| !! | AATATGATTGTATTGAAAAA+TGG | - | chr7.1:33405085-33405104 | None:intergenic | 15.0% |
| !! | AGATATATCATAGAATAATT+AGG | - | chr7.1:33406222-33406241 | None:intergenic | 15.0% |
| !! | TCAATAATAATTTAATTAGG+TGG | + | chr7.1:33406505-33406524 | MS.gene84193:intron | 15.0% |
| !!! | CAAAGATTATACATTTTTTA+AGG | - | chr7.1:33406187-33406206 | None:intergenic | 15.0% |
| !!! | TTTTCAATACAATCATATTA+TGG | + | chr7.1:33405086-33405105 | MS.gene84193:intron | 15.0% |
| !! | AAATCAAAATAATCACATCA+TGG | - | chr7.1:33405611-33405630 | None:intergenic | 20.0% |
| !! | ATTACGGTATTAATAATTAG+AGG | - | chr7.1:33405278-33405297 | None:intergenic | 20.0% |
| !!! | TTAATACCGTAATGTTTTAT+TGG | + | chr7.1:33405285-33405304 | MS.gene84193:intron | 20.0% |
| !!! | TTTGGATAAAATTTTTCCTA+AGG | + | chr7.1:33405447-33405466 | MS.gene84193:CDS | 20.0% |
| ! | ACAGAACCAATAAAACATTA+CGG | - | chr7.1:33405294-33405313 | None:intergenic | 25.0% |
| ! | AGGAATACATAGAAAATATG+AGG | + | chr7.1:33405780-33405799 | MS.gene84193:CDS | 25.0% |
| ! | ATACAATCATATTATGGTGA+AGG | + | chr7.1:33405092-33405111 | MS.gene84193:intron | 25.0% |
| ! | ATGTTTGTTTCATGTAAGTA+TGG | + | chr7.1:33406408-33406427 | MS.gene84193:intron | 25.0% |
| ! | ATTAACTTCCAATATAGACT+TGG | - | chr7.1:33406629-33406648 | None:intergenic | 25.0% |
| ! | GTCATTATATTCAATACCTT+AGG | - | chr7.1:33405466-33405485 | None:intergenic | 25.0% |
| ! | TTGAATATAATGACTGATGA+AGG | + | chr7.1:33405472-33405491 | MS.gene84193:intron | 25.0% |
| ! | TTGATCCAAAAAATTTCCTA+AGG | + | chr7.1:33405501-33405520 | MS.gene84193:intron | 25.0% |
| ! | TTTAACACAATTGAAATACG+TGG | + | chr7.1:33405873-33405892 | MS.gene84193:intron | 25.0% |
| !! | GTTTGATTATTTCTTAGTGA+TGG | + | chr7.1:33406527-33406546 | MS.gene84193:intron | 25.0% |
| !!! | ATATGCCTTAGGAAATTTTT+TGG | - | chr7.1:33405509-33405528 | None:intergenic | 25.0% |
| !!! | TACATTTTTTAAGGGAACAA+AGG | - | chr7.1:33406178-33406197 | None:intergenic | 25.0% |
| AAATAAAGGCCATTGATATG+TGG | + | chr7.1:33406354-33406373 | MS.gene84193:CDS | 30.0% | |
| AATCATATTATGGTGAAGGT+TGG | + | chr7.1:33405096-33405115 | MS.gene84193:intron | 30.0% | |
| ACTTATGTATATGCTGCAAA+TGG | - | chr7.1:33405557-33405576 | None:intergenic | 30.0% | |
| AGAAGATTCACCTTATGATA+TGG | + | chr7.1:33406664-33406683 | MS.gene84193:CDS | 30.0% | |
| ATCATATTATGGTGAAGGTT+GGG | + | chr7.1:33405097-33405116 | MS.gene84193:intron | 30.0% | |
| ATGATATGGTTTCTCTTGAT+GGG | + | chr7.1:33406678-33406697 | MS.gene84193:CDS | 30.0% | |
| CAATTCAGAAAAGAGATGAT+TGG | + | chr7.1:33406381-33406400 | MS.gene84193:CDS | 30.0% | |
| GAAGATTGCTACTCATATAA+TGG | + | chr7.1:33405802-33405821 | MS.gene84193:CDS | 30.0% | |
| TATGATATGGTTTCTCTTGA+TGG | + | chr7.1:33406677-33406696 | MS.gene84193:CDS | 30.0% | |
| TCAAGAGAAACCATATCATA+AGG | - | chr7.1:33406677-33406696 | None:intergenic | 30.0% | |
| ! | AATATATTCAGAAGCGTGTT+TGG | + | chr7.1:33406313-33406332 | MS.gene84193:CDS | 30.0% |
| ! | GAACCAAACAACACAATTTT+AGG | - | chr7.1:33405173-33405192 | None:intergenic | 30.0% |
| ! | TTTTCTATGTATTCCTGCAA+TGG | - | chr7.1:33405776-33405795 | None:intergenic | 30.0% |
| !! | ACCTAACATTGATTTGATGT+AGG | + | chr7.1:33405369-33405388 | MS.gene84193:intron | 30.0% |
| AAGTACACAATCACCAATGA+TGG | - | chr7.1:33405701-33405720 | None:intergenic | 35.0% | |
| AAGTTAATGCCAGCTGAATT+TGG | + | chr7.1:33406641-33406660 | MS.gene84193:CDS | 35.0% | |
| AATACAGTTGCTATGAAGGT+TGG | + | chr7.1:33405204-33405223 | MS.gene84193:CDS | 35.0% | |
| AATGAGCTCAGTGATGAATT+TGG | + | chr7.1:33406260-33406279 | MS.gene84193:intron | 35.0% | |
| AATTGCAGACCACATATCAA+TGG | - | chr7.1:33406366-33406385 | None:intergenic | 35.0% | |
| ATACAGTTGCTATGAAGGTT+GGG | + | chr7.1:33405205-33405224 | MS.gene84193:CDS | 35.0% | |
| ATGAGCTCAGTGATGAATTT+GGG | + | chr7.1:33406261-33406280 | MS.gene84193:intron | 35.0% | |
| ATGTCATAAAAGAAGCAGAG+TGG | + | chr7.1:33406600-33406619 | MS.gene84193:CDS | 35.0% | |
| CACCTCTGATACTCTTATAT+TGG | + | chr7.1:33405645-33405664 | MS.gene84193:intron | 35.0% | |
| GACAATGCATAATATATGCC+AGG | - | chr7.1:33405318-33405337 | None:intergenic | 35.0% | |
| GCCTACATCAAATCAATGTT+AGG | - | chr7.1:33405373-33405392 | None:intergenic | 35.0% | |
| GTGTCGTGAGATGAAAATAA+AGG | + | chr7.1:33406340-33406359 | MS.gene84193:CDS | 35.0% | |
| GTTCAATACAGTTGCTATGA+AGG | + | chr7.1:33405200-33405219 | MS.gene84193:CDS | 35.0% | |
| TATGTATATGCTGCAAATGG+TGG | - | chr7.1:33405554-33405573 | None:intergenic | 35.0% | |
| TCATATTATGGTGAAGGTTG+GGG | + | chr7.1:33405098-33405117 | MS.gene84193:intron | 35.0% | |
| TGTCATAAAAGAAGCAGAGT+GGG | + | chr7.1:33406601-33406620 | MS.gene84193:CDS | 35.0% | |
| TTGAGGGTAAAATATGCCTT+AGG | - | chr7.1:33405520-33405539 | None:intergenic | 35.0% | |
| ! | AGGCCTAAAATTGTGTTGTT+TGG | + | chr7.1:33405167-33405186 | MS.gene84193:CDS | 35.0% |
| ! | TAATCCGAGTCTTATGTGAT+AGG | - | chr7.1:33406099-33406118 | None:intergenic | 35.0% |
| ! | TCATTGGTGATTGTGTACTT+TGG | + | chr7.1:33405701-33405720 | MS.gene84193:CDS | 35.0% |
| ! | TGAGCTTAGCTTAGTTGATA+TGG | - | chr7.1:33405340-33405359 | None:intergenic | 35.0% |
| ! | TGGTGGTATTACTTAAGTTG+AGG | - | chr7.1:33405537-33405556 | None:intergenic | 35.0% |
| !! | GACCAATATAAGAGTATCAG+AGG | - | chr7.1:33405650-33405669 | None:intergenic | 35.0% |
| !! | GGTGGTATTACTTAAGTTGA+GGG | - | chr7.1:33405536-33405555 | None:intergenic | 35.0% |
| !! | TGTAGGCTGATATAGTTTTG+CGG | + | chr7.1:33405386-33405405 | MS.gene84193:intron | 35.0% |
| !!! | TGTTTTATTGGTTCTGTACC+TGG | + | chr7.1:33405297-33405316 | MS.gene84193:intron | 35.0% |
| AGAGCCTATCACATAAGACT+CGG | + | chr7.1:33406092-33406111 | MS.gene84193:intron | 40.0% | |
| AGTGGGAACCAAGTCTATAT+TGG | + | chr7.1:33406618-33406637 | MS.gene84193:CDS | 40.0% | |
| CACTCTACATCTTGAGGAAA+AGG | - | chr7.1:33406731-33406750 | None:intergenic | 40.0% | |
| GAATCTTCTCCAAATTCAGC+TGG | - | chr7.1:33406653-33406672 | None:intergenic | 40.0% | |
| GAGTTCATCTATCAACTGTG+GGG | + | chr7.1:33406549-33406568 | MS.gene84193:CDS | 40.0% | |
| GGAGTTCATCTATCAACTGT+GGG | + | chr7.1:33406548-33406567 | MS.gene84193:CDS | 40.0% | |
| TACAGTTGCTATGAAGGTTG+GGG | + | chr7.1:33405206-33405225 | MS.gene84193:CDS | 40.0% | |
| TATTCCTGCAATGGTACATG+AGG | - | chr7.1:33405767-33405786 | None:intergenic | 40.0% | |
| TGGAGTTCATCTATCAACTG+TGG | + | chr7.1:33406547-33406566 | MS.gene84193:CDS | 40.0% | |
| TGTATTCGTCCATATCCAAG+TGG | + | chr7.1:33405734-33405753 | MS.gene84193:CDS | 40.0% | |
| ! | ATCTTGAGGAAAAGGCACAT+TGG | - | chr7.1:33406723-33406742 | None:intergenic | 40.0% |
| ! | CTAATTTGTGCCTCGTTGAT+CGG | - | chr7.1:33406139-33406158 | None:intergenic | 40.0% |
| ! | CTTTTCCTCAAGATGTAGAG+TGG | + | chr7.1:33406729-33406748 | MS.gene84193:CDS | 40.0% |
| ! | GATATGCTGCTTGGAATTCA+AGG | + | chr7.1:33405410-33405429 | MS.gene84193:CDS | 40.0% |
| ! | TTGGTGATTGTGTACTTTGG+TGG | + | chr7.1:33405704-33405723 | MS.gene84193:CDS | 40.0% |
| !! | GTAGGCTGATATAGTTTTGC+GGG | + | chr7.1:33405387-33405406 | MS.gene84193:intron | 40.0% |
| !! | TAGGCTGATATAGTTTTGCG+GGG | + | chr7.1:33405388-33405407 | MS.gene84193:intron | 40.0% |
| AAGGTTGGGGAGCAATAAAG+AGG | + | chr7.1:33405111-33405130 | MS.gene84193:intron | 45.0% | |
| ACCAGAGAGAGAGGATTGAA+AGG | - | chr7.1:33405025-33405044 | None:intergenic | 45.0% | |
| ACCTTTCAATCCTCTCTCTC+TGG | + | chr7.1:33405021-33405040 | MS.gene84193:CDS | 45.0% | |
| AGGTTGGGGAGCAATAAAGA+GGG | + | chr7.1:33405112-33405131 | MS.gene84193:intron | 45.0% | |
| CACCAATGATGGTTGCTCAA+TGG | - | chr7.1:33405690-33405709 | None:intergenic | 45.0% | |
| CGATCAACGAGGCACAAATT+AGG | + | chr7.1:33406137-33406156 | MS.gene84193:CDS | 45.0% | |
| GAGAAAGTTACCAGAGAGAG+AGG | - | chr7.1:33405034-33405053 | None:intergenic | 45.0% | |
| TCAACTAAGCTAAGCTCACG+AGG | + | chr7.1:33405342-33405361 | MS.gene84193:intron | 45.0% | |
| TGCCATTGAGCAACCATCAT+TGG | + | chr7.1:33405685-33405704 | MS.gene84193:CDS | 45.0% | |
| TTCTCACTTGTACGCTCGTA+AGG | + | chr7.1:33405238-33405257 | MS.gene84193:CDS | 45.0% | |
| !! | TTATCAATAATAATTTAATT+AGG | + | chr7.1:33406502-33406521 | MS.gene84193:intron | 5.0% |
| AGGGTTCTTCCATTGCACAG+TGG | + | chr7.1:33405131-33405150 | MS.gene84193:CDS | 50.0% | |
| ATTTGTGCCTCGTTGATCGG+AGG | - | chr7.1:33406136-33406155 | None:intergenic | 50.0% | |
| CAAGGCCACTCTACATCTTG+AGG | - | chr7.1:33406737-33406756 | None:intergenic | 50.0% | |
| GCAATGGTACATGAGGACCA+AGG | - | chr7.1:33405760-33405779 | None:intergenic | 50.0% | |
| GGGTTCTTCCATTGCACAGT+GGG | + | chr7.1:33405132-33405151 | MS.gene84193:CDS | 50.0% | |
| GGTTCTTCCATTGCACAGTG+GGG | + | chr7.1:33405133-33405152 | MS.gene84193:CDS | 50.0% | |
| GTTCTTCCATTGCACAGTGG+GGG | + | chr7.1:33405134-33405153 | MS.gene84193:CDS | 50.0% | |
| TGGTCCTCATGTACCATTGC+AGG | + | chr7.1:33405760-33405779 | MS.gene84193:CDS | 50.0% | |
| ! | AAGGCGTGCTGTGCAAGTTT+TGG | + | chr7.1:33405429-33405448 | MS.gene84193:CDS | 50.0% |
| ! | TTTTGCGGGGATATGCTGCT+TGG | + | chr7.1:33405401-33405420 | MS.gene84193:CDS | 50.0% |
| ACAGTGGGGGAGCAATAACG+AGG | + | chr7.1:33405147-33405166 | MS.gene84193:CDS | 55.0% | |
| ACATGAGGACCAAGGCCACT+TGG | - | chr7.1:33405752-33405771 | None:intergenic | 55.0% | |
| ATTGCTCCCCCACTGTGCAA+TGG | - | chr7.1:33405143-33405162 | None:intergenic | 55.0% | |
| CAGTAGTCCTCCGATCAACG+AGG | + | chr7.1:33406126-33406145 | MS.gene84193:CDS | 55.0% | |
| CGTCCATATCCAAGTGGCCT+TGG | + | chr7.1:33405740-33405759 | MS.gene84193:CDS | 55.0% | |
| GGACCAAGGCCACTTGGATA+TGG | - | chr7.1:33405746-33405765 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 33405003 | 33406757 | 33405003 | ID=MS.gene84193 |
| chr7.1 | mRNA | 33405003 | 33406757 | 33405003 | ID=MS.gene84193.t1;Parent=MS.gene84193 |
| chr7.1 | exon | 33405003 | 33405042 | 33405003 | ID=MS.gene84193.t1.exon1;Parent=MS.gene84193.t1 |
| chr7.1 | CDS | 33405003 | 33405042 | 33405003 | ID=cds.MS.gene84193.t1;Parent=MS.gene84193.t1 |
| chr7.1 | exon | 33405114 | 33405259 | 33405114 | ID=MS.gene84193.t1.exon2;Parent=MS.gene84193.t1 |
| chr7.1 | CDS | 33405114 | 33405259 | 33405114 | ID=cds.MS.gene84193.t1;Parent=MS.gene84193.t1 |
| chr7.1 | exon | 33405391 | 33405468 | 33405391 | ID=MS.gene84193.t1.exon3;Parent=MS.gene84193.t1 |
| chr7.1 | CDS | 33405391 | 33405468 | 33405391 | ID=cds.MS.gene84193.t1;Parent=MS.gene84193.t1 |
| chr7.1 | exon | 33405683 | 33405823 | 33405683 | ID=MS.gene84193.t1.exon4;Parent=MS.gene84193.t1 |
| chr7.1 | CDS | 33405683 | 33405823 | 33405683 | ID=cds.MS.gene84193.t1;Parent=MS.gene84193.t1 |
| chr7.1 | exon | 33406094 | 33406167 | 33406094 | ID=MS.gene84193.t1.exon5;Parent=MS.gene84193.t1 |
| chr7.1 | CDS | 33406094 | 33406167 | 33406094 | ID=cds.MS.gene84193.t1;Parent=MS.gene84193.t1 |
| chr7.1 | exon | 33406271 | 33406420 | 33406271 | ID=MS.gene84193.t1.exon6;Parent=MS.gene84193.t1 |
| chr7.1 | CDS | 33406271 | 33406420 | 33406271 | ID=cds.MS.gene84193.t1;Parent=MS.gene84193.t1 |
| chr7.1 | exon | 33406544 | 33406757 | 33406544 | ID=MS.gene84193.t1.exon7;Parent=MS.gene84193.t1 |
| chr7.1 | CDS | 33406544 | 33406757 | 33406544 | ID=cds.MS.gene84193.t1;Parent=MS.gene84193.t1 |
| Gene Sequence |
| Protein sequence |
