AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84568


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84568.t1 MTR_7g065980 95.782 569 10 1 4 558 3 571 0.0 1121
MS.gene84568.t1 MTR_7g065970 62.218 577 192 6 1 558 1 570 0.0 697
MS.gene84568.t1 MTR_4g019225 54.912 570 229 10 10 558 10 572 0.0 627
MS.gene84568.t1 MTR_5g073210 44.599 574 281 9 5 558 4 560 5.99e-175 506
MS.gene84568.t1 MTR_5g083360 44.561 570 277 10 14 558 12 567 9.81e-175 506
MS.gene84568.t1 MTR_7g062250 44.894 568 281 10 13 558 21 578 1.23e-168 491
MS.gene84568.t1 MTR_5g020620 45.293 563 273 13 12 558 18 561 2.77e-166 484
MS.gene84568.t1 MTR_7g058690 43.761 585 288 12 6 558 5 580 1.13e-164 481
MS.gene84568.t1 MTR_5g069680 43.728 574 288 10 1 558 4 558 1.79e-164 479
MS.gene84568.t1 MTR_7g060460 43.351 579 291 11 8 558 12 581 4.71e-163 476
MS.gene84568.t1 MTR_7g458880 43.262 564 287 9 19 558 26 580 1.29e-162 475
MS.gene84568.t1 MTR_2g008330 43.627 557 285 8 21 558 33 579 3.91e-162 474
MS.gene84568.t1 MTR_4g015120 44.954 545 269 9 30 558 28 557 2.67e-161 471
MS.gene84568.t1 MTR_3g101640 46.299 581 274 15 2 558 5 571 2.39e-160 469
MS.gene84568.t1 MTR_3g101635 45.863 556 270 10 13 548 12 556 3.90e-160 469
MS.gene84568.t1 MTR_4g064530 44.102 551 279 9 13 544 31 571 5.65e-159 466
MS.gene84568.t1 MTR_5g020600 43.950 562 281 12 14 558 22 566 2.57e-158 464
MS.gene84568.t1 MTR_3g462760 43.670 545 273 11 30 558 30 556 4.82e-158 463
MS.gene84568.t1 MTR_7g062310 42.934 559 287 9 23 558 44 593 5.89e-157 461
MS.gene84568.t1 MTR_5g081810 45.370 540 261 12 35 558 8 529 4.68e-155 454
MS.gene84568.t1 MTR_3g071890 45.627 526 244 13 14 514 18 526 1.70e-153 452
MS.gene84568.t1 MTR_8g027375 41.065 582 304 11 1 558 5 571 2.63e-148 438
MS.gene84568.t1 MTR_4g064530 43.371 528 268 10 13 519 31 548 6.19e-146 432
MS.gene84568.t1 MTR_8g091390 29.764 551 312 16 41 549 49 566 4.15e-63 217
MS.gene84568.t1 MTR_3g078700 28.648 562 331 16 1 536 1 518 3.17e-54 192
MS.gene84568.t1 MTR_3g078740 28.811 597 334 23 1 536 1 567 3.87e-53 191
MS.gene84568.t1 MTR_5g081790 39.194 273 149 7 244 516 165 420 2.56e-52 184
MS.gene84568.t1 MTR_5g081790 47.468 158 74 3 12 160 9 166 3.31e-37 143
MS.gene84568.t1 MTR_3g078730 26.821 563 336 15 1 536 4 517 1.45e-46 171
MS.gene84568.t1 MTR_1g090707 26.072 583 341 19 13 558 7 536 3.94e-40 154
MS.gene84568.t1 MTR_8g479380 26.545 550 319 19 12 531 10 504 1.12e-35 140
MS.gene84568.t1 MTR_1g026410 28.884 502 292 20 40 523 43 497 4.57e-35 139
MS.gene84568.t1 MTR_3g115050 28.713 505 289 21 40 523 44 498 4.71e-35 139
MS.gene84568.t1 MTR_4g049390 26.008 496 304 16 40 518 41 490 1.66e-33 134
MS.gene84568.t1 MTR_8g479390 25.819 519 323 15 29 531 34 506 3.84e-33 133
MS.gene84568.t1 MTR_4g075690 27.218 496 297 19 40 518 44 492 2.21e-32 131
MS.gene84568.t1 MTR_4g101650 27.972 572 350 20 12 558 15 549 4.32e-32 130
MS.gene84568.t1 MTR_2g088080 25.775 516 302 15 29 518 33 493 7.78e-31 126
MS.gene84568.t1 MTR_4g048350 25.806 496 304 19 40 518 41 489 1.86e-30 125
MS.gene84568.t1 MTR_3g008580 26.224 572 360 18 13 558 16 551 1.09e-29 124
MS.gene84568.t1 MTR_3g083430 26.208 538 323 18 29 540 28 517 1.87e-29 122
MS.gene84568.t1 MTR_4g132320 25.984 508 289 19 40 518 45 494 4.35e-29 121
MS.gene84568.t1 MTR_3g083450 26.208 538 323 19 29 540 29 518 6.59e-29 121
MS.gene84568.t1 MTR_3g083400 26.022 538 324 18 29 540 28 517 1.59e-28 120
MS.gene84568.t1 MTR_8g073840 40.223 179 70 5 21 191 25 174 1.76e-28 115
MS.gene84568.t1 MTR_4g083210 26.248 541 338 17 11 531 5 504 2.32e-28 119
MS.gene84568.t1 MTR_3g083440 25.836 538 325 18 29 540 28 517 2.55e-28 119
MS.gene84568.t1 MTR_4g083190 25.953 551 291 21 44 548 45 524 2.71e-28 119
MS.gene84568.t1 MTR_3g083390 25.836 538 325 18 29 540 28 517 8.54e-28 117
MS.gene84568.t1 MTR_5g018270 25.237 527 313 17 29 531 34 503 1.33e-27 117
MS.gene84568.t1 MTR_3g083410 25.577 520 313 18 47 540 10 481 3.51e-27 115
MS.gene84568.t1 MTR_7g051440 27.048 525 321 16 32 532 35 521 5.20e-26 112
MS.gene84568.t1 MTR_4g075690 26.444 450 268 18 40 472 44 447 5.15e-24 105
MS.gene84568.t1 MTR_2g088080 24.625 467 271 15 78 518 1 412 2.60e-22 100
MS.gene84568.t1 MTR_7g058670 46.753 77 39 2 83 157 13 89 6.18e-18 79.7
MS.gene84568.t1 MTR_6g055200 63.043 46 16 1 466 511 1 45 4.32e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84568.t1 AT5G01050 53.737 562 238 8 12 558 14 568 0.0 608
MS.gene84568.t1 AT5G01040 52.236 559 249 6 12 558 14 566 0.0 602
MS.gene84568.t1 AT3G09220 53.188 549 230 9 11 541 11 550 0.0 581
MS.gene84568.t1 AT5G05390 44.797 567 279 10 12 558 13 565 1.23e-171 498
MS.gene84568.t1 AT2G40370 42.491 586 298 10 2 558 5 580 2.82e-171 498
MS.gene84568.t1 AT2G30210 44.718 568 270 12 18 558 20 570 1.39e-170 495
MS.gene84568.t1 AT5G07130 43.793 580 284 12 8 558 3 569 5.52e-167 486
MS.gene84568.t1 AT2G29130 43.966 580 286 12 9 558 3 573 8.53e-167 486
MS.gene84568.t1 AT3G09220 53.362 461 188 9 99 541 2 453 7.20e-165 477
MS.gene84568.t1 AT5G60020 42.930 587 296 12 1 558 1 577 2.08e-161 472
MS.gene84568.t1 AT5G03260 45.848 554 265 14 22 558 22 557 2.68e-161 471
MS.gene84568.t1 AT5G60020 44.304 553 270 11 35 558 2 545 2.03e-160 469
MS.gene84568.t1 AT2G38080 43.058 569 287 13 10 558 7 558 1.26e-159 467
MS.gene84568.t1 AT5G58910 44.320 537 272 9 38 558 41 566 2.58e-159 466
MS.gene84568.t1 AT5G58910 44.037 545 278 9 30 558 34 567 3.21e-159 466
MS.gene84568.t1 AT5G09360 42.049 566 292 10 12 558 21 569 6.33e-158 463
MS.gene84568.t1 AT1G18140 44.077 574 270 13 21 558 23 581 2.18e-156 459
MS.gene84568.t1 AT5G01190 43.902 574 286 9 1 558 5 558 3.87e-156 458
MS.gene84568.t1 AT5G58910 43.762 537 268 10 38 558 5 523 4.15e-154 452
MS.gene84568.t1 AT2G46570 43.165 556 283 10 22 558 28 569 3.24e-149 441
MS.gene84568.t1 AT5G01190 44.802 529 261 8 46 558 31 544 6.56e-149 439
MS.gene84568.t1 AT5G48100 43.094 543 272 13 29 548 25 553 1.72e-142 423
MS.gene84568.t1 AT5G60020 41.835 545 278 12 1 516 1 535 2.16e-140 417
MS.gene84568.t1 AT5G07130 43.863 497 240 11 88 558 1 484 3.62e-139 412
MS.gene84568.t1 AT5G07130 43.863 497 240 11 88 558 1 484 3.62e-139 412
MS.gene84568.t1 AT2G46570 42.828 495 250 10 83 558 4 484 2.30e-127 382
MS.gene84568.t1 AT4G39830 28.668 593 338 20 13 558 23 577 3.42e-63 218
MS.gene84568.t1 AT5G21100 29.032 558 321 18 21 537 19 542 4.60e-61 211
MS.gene84568.t1 AT5G21105 29.932 588 331 21 10 549 20 574 6.08e-61 211
MS.gene84568.t1 AT5G21105 29.529 552 311 20 10 516 20 538 1.54e-52 188
MS.gene84568.t1 AT4G39830 28.654 520 287 19 85 558 1 482 1.77e-47 173
MS.gene84568.t1 AT4G39830 28.655 513 282 19 92 558 6 480 5.15e-46 169
MS.gene84568.t1 AT4G39830 28.131 519 278 18 85 558 1 469 1.53e-44 164
MS.gene84568.t1 AT1G41830 27.925 530 311 19 16 523 16 496 1.35e-36 143
MS.gene84568.t1 AT1G76160 26.560 561 342 18 9 548 6 517 9.18e-36 141
MS.gene84568.t1 AT4G37160 27.057 547 336 16 29 558 34 534 2.22e-35 140
MS.gene84568.t1 AT5G66920 26.134 551 334 17 29 558 40 538 1.12e-34 138
MS.gene84568.t1 AT5G21105 30.769 364 212 12 195 549 51 383 7.85e-34 133
MS.gene84568.t1 AT2G23630 26.740 546 338 18 29 558 33 532 1.05e-33 135
MS.gene84568.t1 AT5G51480 26.460 582 344 18 14 558 16 550 1.09e-33 135
MS.gene84568.t1 AT2G23630 26.740 546 338 18 29 558 38 537 1.14e-33 135
MS.gene84568.t1 AT5G48450 26.459 514 314 18 40 532 43 513 1.62e-33 135
MS.gene84568.t1 AT1G21850 27.574 544 296 20 37 548 40 517 1.66e-33 134
MS.gene84568.t1 AT5G48450 26.459 514 314 18 40 532 43 513 3.25e-33 134
MS.gene84568.t1 AT1G21860 26.204 519 304 21 37 531 40 503 9.99e-33 132
MS.gene84568.t1 AT1G75790 26.633 597 332 25 1 558 12 541 1.97e-32 131
MS.gene84568.t1 AT4G22010 26.032 557 330 18 29 558 29 530 5.74e-32 130
MS.gene84568.t1 AT4G12420 26.217 534 338 17 30 540 29 529 1.65e-31 129
MS.gene84568.t1 AT4G12420 26.217 534 338 17 30 540 29 529 1.65e-31 129
MS.gene84568.t1 AT4G25240 26.817 578 352 18 11 558 14 550 3.12e-31 128
MS.gene84568.t1 AT4G25240 26.817 578 352 18 11 558 14 550 3.12e-31 128
MS.gene84568.t1 AT1G55570 27.470 506 284 17 44 518 47 500 8.38e-30 124
MS.gene84568.t1 AT4G28090 25.251 499 303 19 47 523 49 499 2.09e-28 119
MS.gene84568.t1 AT4G37160 27.790 439 258 14 29 450 34 430 4.80e-27 114
MS.gene84568.t1 AT3G13390 25.285 526 312 16 36 531 38 512 8.83e-27 114
MS.gene84568.t1 AT4G38420 24.950 497 314 16 44 522 48 503 4.41e-26 112
MS.gene84568.t1 AT3G13400 26.358 497 300 17 44 518 45 497 8.92e-25 108
MS.gene84568.t1 AT3G13400 26.358 497 300 17 44 518 45 497 8.92e-25 108
MS.gene84568.t1 AT1G55560 25.100 498 305 18 44 518 44 496 1.45e-22 102
MS.gene84568.t1 AT4G38420 24.587 484 306 16 37 502 41 483 2.18e-22 100
MS.gene84568.t1 AT4G38420 28.295 258 159 6 37 277 41 289 3.48e-20 94.0

Find 117 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTCAATATGAAGATTT+TGG 0.185047 7.3:-40180436 None:intergenic
CAAGTGATTGTTACAGTTAA+TGG 0.188106 7.3:-40179719 MS.gene84568:CDS
TACAGTTGAACGCACTTTCT+TGG 0.249775 7.3:-40180355 MS.gene84568:intron
CCTGTACATTTAGCATTTAC+AGG 0.258852 7.3:+40178089 None:intergenic
CGATAAACTCAAGTATAATT+TGG 0.260597 7.3:-40177712 MS.gene84568:CDS
GGACATTGTGTTATATATTC+TGG 0.264970 7.3:+40179012 None:intergenic
ACAGCATTCATAGTTGAAAA+TGG 0.311293 7.3:-40177426 MS.gene84568:CDS
GACGATTATATCGGTGGTAT+AGG 0.322464 7.3:+40178448 None:intergenic
TTCACTATCAACGGCTTTCC+TGG 0.323167 7.3:-40178733 MS.gene84568:CDS
TGCTTCACCTTAGTCGATTT+CGG 0.324244 7.3:+40177870 None:intergenic
GGTACTTCCTTGTAGGGTTT+AGG 0.325375 7.3:+40178844 None:intergenic
TATTATTGGTACTTCCTTGT+AGG 0.335846 7.3:+40178837 None:intergenic
AGTGGGACAGGGACCCAATT+AGG 0.336834 7.3:+40178164 None:intergenic
TTGCTGTGCCGGTGGGAGGA+TGG 0.341412 7.3:-40177665 MS.gene84568:CDS
CAAATTATACTTGAGTTTAT+CGG 0.350950 7.3:+40177713 None:intergenic
CAGTGAATTGTTATATTGTA+AGG 0.354013 7.3:+40179626 None:intergenic
TATATAGCCAATTAACATTT+AGG 0.357318 7.3:+40177360 None:intergenic
CTGTAACAATCACTTGTTCA+TGG 0.365502 7.3:+40179726 None:intergenic
TGCTGTGCCGGTGGGAGGAT+GGG 0.368851 7.3:-40177664 MS.gene84568:CDS
TCCTTGTAGGGTTTAGGAAA+TGG 0.378132 7.3:+40178850 None:intergenic
CCATCCCTGACTTCCAGCTT+TGG 0.378346 7.3:+40179683 None:intergenic
TTCGGTGTAAATGTAACATT+AGG 0.379226 7.3:+40177888 None:intergenic
ATGTGGATGATCATAATCTA+TGG 0.380123 7.3:-40177458 MS.gene84568:CDS
ATTATTGGTACTTCCTTGTA+GGG 0.396984 7.3:+40178838 None:intergenic
CGAGTGCAGCGTTGACCATT+CGG 0.404878 7.3:+40178543 None:intergenic
CAGGTCCAAAGCTGGAAGTC+AGG 0.405362 7.3:-40179688 MS.gene84568:CDS
TCGCAACACGGTTGCTGTGC+CGG 0.420527 7.3:-40177676 MS.gene84568:CDS
ACGATTATATCGGTGGTATA+GGG 0.426862 7.3:+40178449 None:intergenic
CTGACTTCCAGCTTTGGACC+TGG 0.430307 7.3:+40179689 None:intergenic
GTTGTACGTGCAACAGTTCA+TGG 0.431433 7.3:-40178907 MS.gene84568:CDS
CACAACAAGAAGGAACATTA+TGG 0.433064 7.3:-40178948 MS.gene84568:CDS
CTCGGTGTATGCGGCGTCCA+TGG 0.436546 7.3:+40178472 None:intergenic
GCAACATAACTGGTCTTGTA+GGG 0.442902 7.3:-40178190 MS.gene84568:CDS
GGAACGAGGTTGAATGATAA+TGG 0.449727 7.3:+40178882 None:intergenic
AGTCATCCCATGCATCTTCA+TGG 0.452974 7.3:-40177786 MS.gene84568:CDS
GCCATGTAGTATGAACCTTT+TGG 0.463483 7.3:+40178380 None:intergenic
ACATACCAGGATTGTCAGTT+CGG 0.465483 7.3:+40177628 None:intergenic
GCAACCGTGTTGCGAATTGA+AGG 0.469608 7.3:+40177684 None:intergenic
CCTGTAAATGCTAAATGTAC+AGG 0.471155 7.3:-40178089 MS.gene84568:CDS
TACTTGAGTTTATCGGTAGT+AGG 0.471637 7.3:+40177720 None:intergenic
GCTGCATCACCTTATGTTGT+TGG 0.473113 7.3:-40178359 MS.gene84568:CDS
CCAACACCTTCAACTTCACT+TGG 0.476302 7.3:-40177402 MS.gene84568:CDS
GTTGACCATTCGGAACAAAT+AGG 0.478262 7.3:+40178553 None:intergenic
AAAGACGACGGCACGAGTTG+TGG 0.481369 7.3:+40178310 None:intergenic
TGACTTCCAGCTTTGGACCT+GGG 0.483976 7.3:+40179690 None:intergenic
GTCTGCTGTGAAAAGTATAT+CGG 0.485158 7.3:+40178406 None:intergenic
CTGACCATGCACTATATAGC+TGG 0.487286 7.3:+40179040 None:intergenic
TGCTGCAATGACGATTATAT+CGG 0.491384 7.3:+40178439 None:intergenic
TGGAAAAGGATATTCCATAA+TGG 0.491498 7.3:-40178009 MS.gene84568:CDS
ATTTACACCGAAATCGACTA+AGG 0.491745 7.3:-40177877 MS.gene84568:CDS
AGCAACATAACTGGTCTTGT+AGG 0.494287 7.3:-40178191 MS.gene84568:CDS
GATATAATCGTCATTGCAGC+AGG 0.499394 7.3:-40178437 MS.gene84568:CDS
TCCATTTCCTAAACCCTACA+AGG 0.509307 7.3:-40178851 MS.gene84568:CDS
ACTGGTTCACCAACAACATA+AGG 0.513560 7.3:+40178350 None:intergenic
TCATCCACTTCAAGTGGGAC+AGG 0.515815 7.3:+40178152 None:intergenic
TGTGGATGATCATAATCTAT+GGG 0.516377 7.3:-40177457 MS.gene84568:CDS
TTCACAGCAGACCAACCAAA+AGG 0.519262 7.3:-40178395 MS.gene84568:CDS
CATTTAGCATTTACAGGACA+AGG 0.523265 7.3:+40178095 None:intergenic
CAACACGGTTGCTGTGCCGG+TGG 0.525329 7.3:-40177673 MS.gene84568:CDS
ACTTTACCCAGGTCCAAAGC+TGG 0.536979 7.3:-40179696 MS.gene84568:CDS
TTCATACCATGAAGATGCAT+GGG 0.538306 7.3:+40177780 None:intergenic
ATTCATACCATGAAGATGCA+TGG 0.538422 7.3:+40177779 None:intergenic
TGAAAAGTATATCGGCACTT+TGG 0.539755 7.3:+40178414 None:intergenic
ATTATCATTCAACCTCGTTC+CGG 0.545898 7.3:-40178880 MS.gene84568:CDS
ACATATAGTACCTTTGATGC+CGG 0.551649 7.3:-40178258 MS.gene84568:CDS
CAAATACAATTCAACGGTGG+AGG 0.551874 7.3:-40177844 MS.gene84568:CDS
AGTGGTAATGCCGGCATCAA+AGG 0.554962 7.3:+40178248 None:intergenic
GAACAATTGAAGAGATCACC+AGG 0.557756 7.3:+40178715 None:intergenic
TAACATTTAGGCAAATCAGC+AGG 0.558427 7.3:+40177372 None:intergenic
GAATTGTCGAAGAGTCCTAC+TGG 0.559246 7.3:+40178332 None:intergenic
AGATTCCGAACTGACAATCC+TGG 0.559455 7.3:-40177633 MS.gene84568:intron
TTAGGCAAATCAGCAGGTGG+TGG 0.560545 7.3:+40177378 None:intergenic
GGTCCCTGTCCCACTTGAAG+TGG 0.563821 7.3:-40178156 MS.gene84568:CDS
AGGTCCAAAGCTGGAAGTCA+GGG 0.569821 7.3:-40179687 MS.gene84568:CDS
AACACGGTTGCTGTGCCGGT+GGG 0.573459 7.3:-40177672 MS.gene84568:CDS
CTTACAATATAACAATTCAC+TGG 0.574181 7.3:-40179625 MS.gene84568:intron
TATATCGGTGGTATAGGGCT+CGG 0.574475 7.3:+40178454 None:intergenic
AAAGACCTATTTGTTCCGAA+TGG 0.575759 7.3:-40178558 MS.gene84568:CDS
GCTAAATGTACAGGTCCACT+TGG 0.578008 7.3:-40178080 MS.gene84568:CDS
TTTAGGAAATGGAAATCGAC+CGG 0.579716 7.3:+40178861 None:intergenic
ACCAAAAGGTTCATACTACA+TGG 0.591334 7.3:-40178381 MS.gene84568:CDS
TATGTATATCACAATTAACA+TGG 0.591646 7.3:-40178126 MS.gene84568:CDS
ACGGTTGCTGTGCCGGTGGG+AGG 0.595198 7.3:-40177669 MS.gene84568:CDS
CTATATAGTGCATGGTCAGA+CGG 0.595622 7.3:-40179036 MS.gene84568:CDS
CAAATTCACAGTGGTAGCCA+TGG 0.597951 7.3:-40178489 MS.gene84568:CDS
TTTAATGTGACACAACAAGA+AGG 0.597981 7.3:-40178958 MS.gene84568:CDS
GAATCCTTCAATTCGCAACA+CGG 0.600436 7.3:-40177688 MS.gene84568:CDS
ATAGCAGCCCATCCTCCCAC+CGG 0.601570 7.3:+40177657 None:intergenic
TTGATAGTGAACGCATCAGA+TGG 0.603628 7.3:+40178745 None:intergenic
TTTGGTGTTATGGCAAACAT+GGG 0.609087 7.3:-40180418 MS.gene84568:CDS
CATCCACTTCAAGTGGGACA+GGG 0.612302 7.3:+40178153 None:intergenic
GCAATTCAAATACAATTCAA+CGG 0.613563 7.3:-40177850 MS.gene84568:CDS
TTGTTGTGAAGTGGTAATGC+CGG 0.616115 7.3:+40178239 None:intergenic
CCAAGTGAAGTTGAAGGTGT+TGG 0.618280 7.3:+40177402 None:intergenic
TCTGATGCGTTCACTATCAA+CGG 0.619571 7.3:-40178742 MS.gene84568:CDS
TGCAATGACGATTATATCGG+TGG 0.620768 7.3:+40178442 None:intergenic
TATGTTGTTGGTGAACCAGT+AGG 0.621180 7.3:-40178347 MS.gene84568:CDS
ATATGTTCATCCACTTCAAG+TGG 0.622032 7.3:+40178146 None:intergenic
ATGTATATCACAATTAACAT+GGG 0.622921 7.3:-40178125 MS.gene84568:CDS
ACAGTTAATGGACTTTACCC+AGG 0.628423 7.3:-40179707 MS.gene84568:CDS
TGTTCCAGCTATATAGTGCA+TGG 0.629241 7.3:-40179044 MS.gene84568:CDS
CAACATAACTGGTCTTGTAG+GGG 0.631983 7.3:-40178189 MS.gene84568:CDS
ATTGGTGTATTGTTGTGAAG+TGG 0.636346 7.3:+40178230 None:intergenic
GGTATAGGGCTCGGTGTATG+CGG 0.637849 7.3:+40178463 None:intergenic
TATAAGCTGAAAGTGAAGCA+AGG 0.638942 7.3:-40178581 MS.gene84568:CDS
AATGGAAATCGACCGGAACG+AGG 0.643895 7.3:+40178868 None:intergenic
TACCACTGTGAATTTGTGAT+CGG 0.646281 7.3:+40178496 None:intergenic
CCAAAGCTGGAAGTCAGGGA+TGG 0.647318 7.3:-40179683 MS.gene84568:CDS
GGTGGACCAAGTGAAGTTGA+AGG 0.647739 7.3:+40177396 None:intergenic
CATTTAGGCAAATCAGCAGG+TGG 0.649176 7.3:+40177375 None:intergenic
AACATAACTGGTCTTGTAGG+GGG 0.652841 7.3:-40178188 MS.gene84568:CDS
TATGTTCATCCACTTCAAGT+GGG 0.681147 7.3:+40178147 None:intergenic
GTGGATGATCATAATCTATG+GGG 0.686953 7.3:-40177456 MS.gene84568:CDS
AACAAGAAGGAACATTATGG+TGG 0.690252 7.3:-40178945 MS.gene84568:CDS
GTGACCCTCGTAAAAGACGA+CGG 0.694689 7.3:+40178298 None:intergenic
ATTCAAATACAATTCAACGG+TGG 0.707341 7.3:-40177847 MS.gene84568:CDS
TGCCGATCACAAATTCACAG+TGG 0.784044 7.3:-40178498 MS.gene84568:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTCTTGATTGTTTATTT+TGG - chr7.3:40180292-40180311 MS.gene84568:intron 15.0%
!!! ACATTATTTTTAACTTTCTT+TGG - chr7.3:40178341-40178360 MS.gene84568:CDS 15.0%
!!! GATAATCTTTTTAGAATAAT+AGG + chr7.3:40177761-40177780 None:intergenic 15.0%
!!! TCTAATTTTATCTTCATTTA+TGG - chr7.3:40177409-40177428 MS.gene84568:CDS 15.0%
!!! TTGTATGTAAATTTATTTTC+AGG + chr7.3:40178818-40178837 None:intergenic 15.0%
!! AAAAAAAAAATGCCTTCAAT+TGG + chr7.3:40178255-40178274 None:intergenic 20.0%
!! ATAAAATACTTATACATACC+AGG + chr7.3:40180185-40180204 None:intergenic 20.0%
!! ATGATTGCAATTAGTTATAT+TGG + chr7.3:40177567-40177586 None:intergenic 20.0%
!! ATGTATATCACAATTAACAT+GGG - chr7.3:40179672-40179691 MS.gene84568:CDS 20.0%
!! ATGTATCTATTCTAATACTT+GGG + chr7.3:40178563-40178582 None:intergenic 20.0%
!! ATTATCAAAACTCTATAGAA+AGG - chr7.3:40177775-40177794 MS.gene84568:CDS 20.0%
!! CAAATTATACTTGAGTTTAT+CGG + chr7.3:40180087-40180106 None:intergenic 20.0%
!! TATGTATATCACAATTAACA+TGG - chr7.3:40179671-40179690 MS.gene84568:CDS 20.0%
!! TGATTGCAATTAGTTATATT+GGG + chr7.3:40177566-40177585 None:intergenic 20.0%
!! TTACAACTTAATGAAATAGT+TGG + chr7.3:40178588-40178607 None:intergenic 20.0%
!! TTATAAATCTCACTTTCTTA+TGG + chr7.3:40177635-40177654 None:intergenic 20.0%
!!! AAAATCGTATGTTTCTATTT+CGG - chr7.3:40179107-40179126 MS.gene84568:intron 20.0%
!!! AAATTTTTTAGCAACATAAC+TGG - chr7.3:40179597-40179616 MS.gene84568:intron 20.0%
!!! CATTTTTTTTTTGCCAAATT+TGG - chr7.3:40178263-40178282 MS.gene84568:CDS 20.0%
!!! GATTTCACTATATTTTCTTT+TGG - chr7.3:40177918-40177937 MS.gene84568:CDS 20.0%
!!! TGAATTTTTGAACTATGTAA+AGG - chr7.3:40178723-40178742 MS.gene84568:CDS 20.0%
!!! TTAGGATCCAAAAATATTTT+CGG + chr7.3:40179894-40179913 None:intergenic 20.0%
!!! TTATTTTTAACTTTCTTTGG+TGG - chr7.3:40178344-40178363 MS.gene84568:CDS 20.0%
! AAAAATAATGTCTCATCTCA+TGG + chr7.3:40178332-40178351 None:intergenic 25.0%
! AGACATCGTATTATATATAC+AGG + chr7.3:40178426-40178445 None:intergenic 25.0%
! CAGTGAATTGTTATATTGTA+AGG + chr7.3:40178174-40178193 None:intergenic 25.0%
! CATGTATCTATTCTAATACT+TGG + chr7.3:40178564-40178583 None:intergenic 25.0%
! CGATAAACTCAAGTATAATT+TGG - chr7.3:40180085-40180104 MS.gene84568:intron 25.0%
! CTAAAAAATTTGTGAGCTAT+TGG + chr7.3:40179588-40179607 None:intergenic 25.0%
! CTTACAATATAACAATTCAC+TGG - chr7.3:40178172-40178191 MS.gene84568:CDS 25.0%
! GACATCGTATTATATATACA+GGG + chr7.3:40178425-40178444 None:intergenic 25.0%
! GCAATTCAAATACAATTCAA+CGG - chr7.3:40179947-40179966 MS.gene84568:intron 25.0%
! GTAAAAATATGCTTCCATTA+TGG + chr7.3:40179805-40179824 None:intergenic 25.0%
! TTATATATGAGTTCTTTCTC+TGG + chr7.3:40178638-40178657 None:intergenic 25.0%
!! CTATGACATAAATTTTTGCA+AGG - chr7.3:40177604-40177623 MS.gene84568:intron 25.0%
!! TAGGATCCAAAAATATTTTC+GGG + chr7.3:40179893-40179912 None:intergenic 25.0%
!! TGGTATGAATTTTCATGTTT+TGG - chr7.3:40180031-40180050 MS.gene84568:intron 25.0%
!! TTTACGAAGTCGAAAAATTT+TGG + chr7.3:40179870-40179889 None:intergenic 25.0%
!!! AATTTATTTTCAGGACGAAT+TGG + chr7.3:40178809-40178828 None:intergenic 25.0%
!!! GACTAATTAAATTCGCTTTT+TGG + chr7.3:40178495-40178514 None:intergenic 25.0%
!!! TTGGCTTCTAATGTTTTTTT+TGG - chr7.3:40177955-40177974 MS.gene84568:CDS 25.0%
ACAGCATTCATAGTTGAAAA+TGG - chr7.3:40180371-40180390 MS.gene84568:CDS 30.0%
ATGTGGATGATCATAATCTA+TGG - chr7.3:40180339-40180358 MS.gene84568:intron 30.0%
ATTATTGGTACTTCCTTGTA+GGG + chr7.3:40178962-40178981 None:intergenic 30.0%
ATTCAAATACAATTCAACGG+TGG - chr7.3:40179950-40179969 MS.gene84568:intron 30.0%
ATTGAAATTGAATGAGTTGC+AGG - chr7.3:40178020-40178039 MS.gene84568:CDS 30.0%
CAAGTGATTGTTACAGTTAA+TGG - chr7.3:40178078-40178097 MS.gene84568:CDS 30.0%
CGTATTATATATACAGGGTT+CGG + chr7.3:40178420-40178439 None:intergenic 30.0%
CTAATTGCAATCATTTCTCA+CGG - chr7.3:40177573-40177592 MS.gene84568:intron 30.0%
GGACATTGTGTTATATATTC+TGG + chr7.3:40178788-40178807 None:intergenic 30.0%
GTATTATATATACAGGGTTC+GGG + chr7.3:40178419-40178438 None:intergenic 30.0%
TACCAATAATACTAGGTGAT+TGG - chr7.3:40178972-40178991 MS.gene84568:CDS 30.0%
TACCAATCACCTAGTATTAT+TGG + chr7.3:40178977-40178996 None:intergenic 30.0%
TATTATTGGTACTTCCTTGT+AGG + chr7.3:40178963-40178982 None:intergenic 30.0%
TGGAAAAGGATATTCCATAA+TGG - chr7.3:40179788-40179807 MS.gene84568:intron 30.0%
TGTGGATGATCATAATCTAT+GGG - chr7.3:40180340-40180359 MS.gene84568:intron 30.0%
TTTAATGTGACACAACAAGA+AGG - chr7.3:40178839-40178858 MS.gene84568:intron 30.0%
! CATTAGAAGCCAATTTTACT+TGG + chr7.3:40177948-40177967 None:intergenic 30.0%
! CGTAAACCCGAAAATATTTT+TGG - chr7.3:40179884-40179903 MS.gene84568:intron 30.0%
! GACATAAATTTTTGCAAGGT+CGG - chr7.3:40177608-40177627 MS.gene84568:intron 30.0%
! GTTCTTTCTCTGGATTTTAA+TGG + chr7.3:40178628-40178647 None:intergenic 30.0%
! TTCGGTGTAAATGTAACATT+AGG + chr7.3:40179912-40179931 None:intergenic 30.0%
! TTCTCTTTATCTTTTTGCGA+AGG - chr7.3:40177822-40177841 MS.gene84568:CDS 30.0%
! TTTTGAACTATGTAAAGGCA+TGG - chr7.3:40178728-40178747 MS.gene84568:CDS 30.0%
!! AAAAATTTTGGAGGGTTATC+TGG + chr7.3:40179858-40179877 None:intergenic 30.0%
!! AAGGAAGTACCAATAATACT+AGG - chr7.3:40178965-40178984 MS.gene84568:CDS 30.0%
!! GCATATTTTTACAATGTGAG+TGG - chr7.3:40179813-40179832 MS.gene84568:intron 30.0%
!!! CTTGATTGTTTATTTTGGCA+GGG - chr7.3:40180297-40180316 MS.gene84568:intron 30.0%
!!! TCTTGATTGTTTATTTTGGC+AGG - chr7.3:40180296-40180315 MS.gene84568:intron 30.0%
!!! TTGATTGTTTATTTTGGCAG+GGG - chr7.3:40180298-40180317 MS.gene84568:intron 30.0%
AAAGACCTATTTGTTCCGAA+TGG - chr7.3:40179239-40179258 MS.gene84568:intron 35.0%
AAATGCCTTCAATTGGTGAA+AGG + chr7.3:40178248-40178267 None:intergenic 35.0%
AACAAGAAGGAACATTATGG+TGG - chr7.3:40178852-40178871 MS.gene84568:CDS 35.0%
AACCCTGATCATTTACAACT+TGG + chr7.3:40177732-40177751 None:intergenic 35.0%
ACATATAGTACCTTTGATGC+CGG - chr7.3:40179539-40179558 MS.gene84568:intron 35.0%
ACCAAAAGGTTCATACTACA+TGG - chr7.3:40179416-40179435 MS.gene84568:intron 35.0%
ACGATTATATCGGTGGTATA+GGG + chr7.3:40179351-40179370 None:intergenic 35.0%
ATACTAGGTGATTGGTATGA+TGG - chr7.3:40178980-40178999 MS.gene84568:CDS 35.0%
ATATGTTCATCCACTTCAAG+TGG + chr7.3:40179654-40179673 None:intergenic 35.0%
ATCCAAAAAGAACTCGAAAC+AGG - chr7.3:40179019-40179038 MS.gene84568:CDS 35.0%
ATCGCTTGAGATGAATAAAC+GGG - chr7.3:40178377-40178396 MS.gene84568:CDS 35.0%
ATTATCATTCAACCTCGTTC+CGG - chr7.3:40178917-40178936 MS.gene84568:CDS 35.0%
ATTCATACCATGAAGATGCA+TGG + chr7.3:40180021-40180040 None:intergenic 35.0%
ATTGGTGTATTGTTGTGAAG+TGG + chr7.3:40179570-40179589 None:intergenic 35.0%
ATTTACACCGAAATCGACTA+AGG - chr7.3:40179920-40179939 MS.gene84568:intron 35.0%
CAATTGTGACGAACCAAATT+TGG + chr7.3:40178279-40178298 None:intergenic 35.0%
CACAACAAGAAGGAACATTA+TGG - chr7.3:40178849-40178868 MS.gene84568:CDS 35.0%
CATCGCTTGAGATGAATAAA+CGG - chr7.3:40178376-40178395 MS.gene84568:CDS 35.0%
CATTTAGCATTTACAGGACA+AGG + chr7.3:40179705-40179724 None:intergenic 35.0%
CCTGTAAATGCTAAATGTAC+AGG - chr7.3:40179708-40179727 MS.gene84568:CDS 35.0%
CCTGTACATTTAGCATTTAC+AGG + chr7.3:40179711-40179730 None:intergenic 35.0%
CTGTAACAATCACTTGTTCA+TGG + chr7.3:40178074-40178093 None:intergenic 35.0%
GTCCAAGTTGTAAATGATCA+GGG - chr7.3:40177727-40177746 MS.gene84568:CDS 35.0%
GTGGATGATCATAATCTATG+GGG - chr7.3:40180341-40180360 MS.gene84568:intron 35.0%
GTTATATTGGGTAAGCTAAG+TGG + chr7.3:40177554-40177573 None:intergenic 35.0%
TAACATTTAGGCAAATCAGC+AGG + chr7.3:40180428-40180447 None:intergenic 35.0%
TACCACTGTGAATTTGTGAT+CGG + chr7.3:40179304-40179323 None:intergenic 35.0%
TACTTGAGTTTATCGGTAGT+AGG + chr7.3:40180080-40180099 None:intergenic 35.0%
TATAAGCTGAAAGTGAAGCA+AGG - chr7.3:40179216-40179235 MS.gene84568:intron 35.0%
TATAGTGAAATCCACGTGTT+AGG + chr7.3:40177910-40177929 None:intergenic 35.0%
TATGTTCATCCACTTCAAGT+GGG + chr7.3:40179653-40179672 None:intergenic 35.0%
TCAAACCTTTCACCAATTGA+AGG - chr7.3:40178240-40178259 MS.gene84568:CDS 35.0%
TGCTGCAATGACGATTATAT+CGG + chr7.3:40179361-40179380 None:intergenic 35.0%
TGTCCAAGTTGTAAATGATC+AGG - chr7.3:40177726-40177745 MS.gene84568:CDS 35.0%
TTCATACCATGAAGATGCAT+GGG + chr7.3:40180020-40180039 None:intergenic 35.0%
TTTAGGAAATGGAAATCGAC+CGG + chr7.3:40178939-40178958 None:intergenic 35.0%
TTTGGACAGCCAAGTAAAAT+TGG - chr7.3:40177936-40177955 MS.gene84568:CDS 35.0%
! ACGAAGTCGAAAAATTTTGG+AGG + chr7.3:40179867-40179886 None:intergenic 35.0%
! ATACTTGGGTTTACTAGTCT+TGG + chr7.3:40178549-40178568 None:intergenic 35.0%
! ATGGAATATCCTTTTCCAAC+AGG + chr7.3:40179786-40179805 None:intergenic 35.0%
! ATGGTTTTTGCATTGTCATG+TGG - chr7.3:40180322-40180341 MS.gene84568:intron 35.0%
! CGAAGTCGAAAAATTTTGGA+GGG + chr7.3:40179866-40179885 None:intergenic 35.0%
! CTTTATCTTTTTGCGAAGGT+GGG - chr7.3:40177826-40177845 MS.gene84568:CDS 35.0%
! GATGCAAATTTTTGTCCAAG+TGG + chr7.3:40179735-40179754 None:intergenic 35.0%
! GTCTGCTGTGAAAAGTATAT+CGG + chr7.3:40179394-40179413 None:intergenic 35.0%
! TCTTTATCTTTTTGCGAAGG+TGG - chr7.3:40177825-40177844 MS.gene84568:CDS 35.0%
! TGAAAAGTATATCGGCACTT+TGG + chr7.3:40179386-40179405 None:intergenic 35.0%
! TGTAGTATGAACCTTTTGGT+TGG + chr7.3:40179416-40179435 None:intergenic 35.0%
! TTGGTATGATGGAAATGTTG+AGG - chr7.3:40178991-40179010 MS.gene84568:CDS 35.0%
! TTTTTGCTTCCTGTTGGAAA+AGG - chr7.3:40179774-40179793 MS.gene84568:intron 35.0%
!! CTTTCTCTGGATTTTAATGG+TGG + chr7.3:40178625-40178644 None:intergenic 35.0%
!! TTTGGTGTTATGGCAAACAT+GGG - chr7.3:40177379-40177398 MS.gene84568:CDS 35.0%
!!! TTTTGGTGTTATGGCAAACA+TGG - chr7.3:40177378-40177397 MS.gene84568:CDS 35.0%
ACATACCAGGATTGTCAGTT+CGG + chr7.3:40180172-40180191 None:intergenic 40.0%
CAAATACAATTCAACGGTGG+AGG - chr7.3:40179953-40179972 MS.gene84568:intron 40.0%
CTATATAGTGCATGGTCAGA+CGG - chr7.3:40178761-40178780 MS.gene84568:CDS 40.0%
GAACAATTGAAGAGATCACC+AGG + chr7.3:40179085-40179104 None:intergenic 40.0%
GAATCCTTCAATTCGCAACA+CGG - chr7.3:40180109-40180128 MS.gene84568:intron 40.0%
GACGATTATATCGGTGGTAT+AGG + chr7.3:40179352-40179371 None:intergenic 40.0%
GATATAATCGTCATTGCAGC+AGG - chr7.3:40179360-40179379 MS.gene84568:intron 40.0%
GGAACGAGGTTGAATGATAA+TGG + chr7.3:40178918-40178937 None:intergenic 40.0%
GTTGACCATTCGGAACAAAT+AGG + chr7.3:40179247-40179266 None:intergenic 40.0%
TACAGTTGAACGCACTTTCT+TGG - chr7.3:40177442-40177461 MS.gene84568:CDS 40.0%
TCCATTTCCTAAACCCTACA+AGG - chr7.3:40178946-40178965 MS.gene84568:CDS 40.0%
TCCTTGTAGGGTTTAGGAAA+TGG + chr7.3:40178950-40178969 None:intergenic 40.0%
TCGATCTCTTGAGCATAACT+CGG + chr7.3:40178456-40178475 None:intergenic 40.0%
TCTGATGCGTTCACTATCAA+CGG - chr7.3:40179055-40179074 MS.gene84568:CDS 40.0%
TGCAATGACGATTATATCGG+TGG + chr7.3:40179358-40179377 None:intergenic 40.0%
TGTTCCAGCTATATAGTGCA+TGG - chr7.3:40178753-40178772 MS.gene84568:CDS 40.0%
! ACTGGTTCACCAACAACATA+AGG + chr7.3:40179450-40179469 None:intergenic 40.0%
! GCCATGTAGTATGAACCTTT+TGG + chr7.3:40179420-40179439 None:intergenic 40.0%
! TATGTTGTTGGTGAACCAGT+AGG - chr7.3:40179450-40179469 MS.gene84568:intron 40.0%
! TGCTTCACCTTAGTCGATTT+CGG + chr7.3:40179930-40179949 None:intergenic 40.0%
! TTGTTGTGAAGTGGTAATGC+CGG + chr7.3:40179561-40179580 None:intergenic 40.0%
!! AACATAACTGGTCTTGTAGG+GGG - chr7.3:40179609-40179628 MS.gene84568:intron 40.0%
!! ACAGTTAATGGACTTTACCC+AGG - chr7.3:40178090-40178109 MS.gene84568:CDS 40.0%
!! AGCAACATAACTGGTCTTGT+AGG - chr7.3:40179606-40179625 MS.gene84568:intron 40.0%
!! CAACATAACTGGTCTTGTAG+GGG - chr7.3:40179608-40179627 MS.gene84568:intron 40.0%
!! GCAACATAACTGGTCTTGTA+GGG - chr7.3:40179607-40179626 MS.gene84568:intron 40.0%
!! TTGATAGTGAACGCATCAGA+TGG + chr7.3:40179055-40179074 None:intergenic 40.0%
!!! ATGTTTTGGCTCAAGACTTC+GGG - chr7.3:40180045-40180064 MS.gene84568:intron 40.0%
!!! CATGTTTTGGCTCAAGACTT+CGG - chr7.3:40180044-40180063 MS.gene84568:intron 40.0%
!!! GAGTCATTTTTGCTTCCTGT+TGG - chr7.3:40179768-40179787 MS.gene84568:intron 40.0%
!!! TGTTTATTTTGGCAGGGGTA+TGG - chr7.3:40180303-40180322 MS.gene84568:intron 40.0%
AGATTCCGAACTGACAATCC+TGG - chr7.3:40180164-40180183 MS.gene84568:intron 45.0%
AGTCATCCCATGCATCTTCA+TGG - chr7.3:40180011-40180030 MS.gene84568:intron 45.0%
CAAATTCACAGTGGTAGCCA+TGG - chr7.3:40179308-40179327 MS.gene84568:intron 45.0%
CATTTAGGCAAATCAGCAGG+TGG + chr7.3:40180425-40180444 None:intergenic 45.0%
CCAACACCTTCAACTTCACT+TGG - chr7.3:40180395-40180414 MS.gene84568:CDS 45.0%
CTGACCATGCACTATATAGC+TGG + chr7.3:40178760-40178779 None:intergenic 45.0%
GAATTGTCGAAGAGTCCTAC+TGG + chr7.3:40179468-40179487 None:intergenic 45.0%
GCTAAATGTACAGGTCCACT+TGG - chr7.3:40179717-40179736 MS.gene84568:CDS 45.0%
GCTGCATCACCTTATGTTGT+TGG - chr7.3:40179438-40179457 MS.gene84568:intron 45.0%
GGTACTTCCTTGTAGGGTTT+AGG + chr7.3:40178956-40178975 None:intergenic 45.0%
GTGAAATCCACGTGTTAGGT+CGG + chr7.3:40177906-40177925 None:intergenic 45.0%
GTTGTACGTGCAACAGTTCA+TGG - chr7.3:40178890-40178909 MS.gene84568:CDS 45.0%
TATATCGGTGGTATAGGGCT+CGG + chr7.3:40179346-40179365 None:intergenic 45.0%
TCTTGTAGGGGGTCCTAATT+GGG - chr7.3:40179620-40179639 MS.gene84568:intron 45.0%
TGAAATCCACGTGTTAGGTC+GGG + chr7.3:40177905-40177924 None:intergenic 45.0%
TGCCGATCACAAATTCACAG+TGG - chr7.3:40179299-40179318 MS.gene84568:intron 45.0%
TTCACAGCAGACCAACCAAA+AGG - chr7.3:40179402-40179421 MS.gene84568:intron 45.0%
TTCACTATCAACGGCTTTCC+TGG - chr7.3:40179064-40179083 MS.gene84568:intron 45.0%
! ACAGGGTTCGGGTTTAAACT+CGG + chr7.3:40178408-40178427 None:intergenic 45.0%
! ATCTTTTTGCGAAGGTGGGT+TGG - chr7.3:40177830-40177849 MS.gene84568:CDS 45.0%
! CCAAGTGAAGTTGAAGGTGT+TGG + chr7.3:40180398-40180417 None:intergenic 45.0%
!! TCTTTTTGCGAAGGTGGGTT+GGG - chr7.3:40177831-40177850 MS.gene84568:CDS 45.0%
!!! CGCCTGTTTCGAGTTCTTTT+TGG + chr7.3:40179024-40179043 None:intergenic 45.0%
AATGGAAATCGACCGGAACG+AGG + chr7.3:40178932-40178951 None:intergenic 50.0%
AATTTCCCCGACCTAACACG+TGG - chr7.3:40177896-40177915 MS.gene84568:CDS 50.0%
ACGTGTTAGGTCGGGGAAAT+TGG + chr7.3:40177897-40177916 None:intergenic 50.0%
ACTTTACCCAGGTCCAAAGC+TGG - chr7.3:40178101-40178120 MS.gene84568:CDS 50.0%
AGGTCCAAAGCTGGAAGTCA+GGG - chr7.3:40178110-40178129 MS.gene84568:CDS 50.0%
CATCCACTTCAAGTGGGACA+GGG + chr7.3:40179647-40179666 None:intergenic 50.0%
GAAATCCACGTGTTAGGTCG+GGG + chr7.3:40177904-40177923 None:intergenic 50.0%
GCAACCGTGTTGCGAATTGA+AGG + chr7.3:40180116-40180135 None:intergenic 50.0%
GGTGGACCAAGTGAAGTTGA+AGG + chr7.3:40180404-40180423 None:intergenic 50.0%
GTCTTGTAGGGGGTCCTAAT+TGG - chr7.3:40179619-40179638 MS.gene84568:intron 50.0%
GTGACCCTCGTAAAAGACGA+CGG + chr7.3:40179502-40179521 None:intergenic 50.0%
TCATCCACTTCAAGTGGGAC+AGG + chr7.3:40179648-40179667 None:intergenic 50.0%
TTAGGCAAATCAGCAGGTGG+TGG + chr7.3:40180422-40180441 None:intergenic 50.0%
! AGTGGTAATGCCGGCATCAA+AGG + chr7.3:40179552-40179571 None:intergenic 50.0%
! CAGGGTTCGGGTTTAAACTC+GGG + chr7.3:40178407-40178426 None:intergenic 50.0%
!! TGACTTCCAGCTTTGGACCT+GGG + chr7.3:40178110-40178129 None:intergenic 50.0%
!!! CTTTTTGCGAAGGTGGGTTG+GGG - chr7.3:40177832-40177851 MS.gene84568:CDS 50.0%
AAAGACGACGGCACGAGTTG+TGG + chr7.3:40179490-40179509 None:intergenic 55.0%
AGTGGGACAGGGACCCAATT+AGG + chr7.3:40179636-40179655 None:intergenic 55.0%
CAGGTCCAAAGCTGGAAGTC+AGG - chr7.3:40178109-40178128 MS.gene84568:CDS 55.0%
CCAAAGCTGGAAGTCAGGGA+TGG - chr7.3:40178114-40178133 MS.gene84568:CDS 55.0%
CCATCCCTGACTTCCAGCTT+TGG + chr7.3:40178117-40178136 None:intergenic 55.0%
! CGTGCCGTCGTCTTTTACGA+GGG - chr7.3:40179495-40179514 MS.gene84568:intron 55.0%
! TCGTGCCGTCGTCTTTTACG+AGG - chr7.3:40179494-40179513 MS.gene84568:intron 55.0%
!! CGAGTGCAGCGTTGACCATT+CGG + chr7.3:40179257-40179276 None:intergenic 55.0%
!! CTGACTTCCAGCTTTGGACC+TGG + chr7.3:40178111-40178130 None:intergenic 55.0%
!! GGTATAGGGCTCGGTGTATG+CGG + chr7.3:40179337-40179356 None:intergenic 55.0%
ATAGCAGCCCATCCTCCCAC+CGG + chr7.3:40180143-40180162 None:intergenic 60.0%
GGTCCCTGTCCCACTTGAAG+TGG - chr7.3:40179641-40179660 MS.gene84568:CDS 60.0%
TCGCAACACGGTTGCTGTGC+CGG - chr7.3:40180121-40180140 MS.gene84568:intron 60.0%
! AACACGGTTGCTGTGCCGGT+GGG - chr7.3:40180125-40180144 MS.gene84568:intron 60.0%
!! CGAAGGTGGGTTGGGGAAAC+TGG - chr7.3:40177839-40177858 MS.gene84568:CDS 60.0%
CAACACGGTTGCTGTGCCGG+TGG - chr7.3:40180124-40180143 MS.gene84568:intron 65.0%
! CTCGGTGTATGCGGCGTCCA+TGG + chr7.3:40179328-40179347 None:intergenic 65.0%
! TGCTGTGCCGGTGGGAGGAT+GGG - chr7.3:40180133-40180152 MS.gene84568:intron 65.0%
! TTGCTGTGCCGGTGGGAGGA+TGG - chr7.3:40180132-40180151 MS.gene84568:intron 65.0%
! ACGGTTGCTGTGCCGGTGGG+AGG - chr7.3:40180128-40180147 MS.gene84568:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 40177371 40180448 40177371 ID=MS.gene84568
chr7.3 mRNA 40177371 40180448 40177371 ID=MS.gene84568.t1;Parent=MS.gene84568
chr7.3 exon 40180356 40180448 40180356 ID=MS.gene84568.t1.exon1;Parent=MS.gene84568.t1
chr7.3 CDS 40180356 40180448 40180356 ID=cds.MS.gene84568.t1;Parent=MS.gene84568.t1
chr7.3 exon 40179626 40179777 40179626 ID=MS.gene84568.t1.exon2;Parent=MS.gene84568.t1
chr7.3 CDS 40179626 40179777 40179626 ID=cds.MS.gene84568.t1;Parent=MS.gene84568.t1
chr7.3 exon 40178849 40179074 40178849 ID=MS.gene84568.t1.exon3;Parent=MS.gene84568.t1
chr7.3 CDS 40178849 40179074 40178849 ID=cds.MS.gene84568.t1;Parent=MS.gene84568.t1
chr7.3 exon 40178707 40178806 40178707 ID=MS.gene84568.t1.exon4;Parent=MS.gene84568.t1
chr7.3 CDS 40178707 40178806 40178707 ID=cds.MS.gene84568.t1;Parent=MS.gene84568.t1
chr7.3 exon 40177634 40178608 40177634 ID=MS.gene84568.t1.exon5;Parent=MS.gene84568.t1
chr7.3 CDS 40177634 40178608 40177634 ID=cds.MS.gene84568.t1;Parent=MS.gene84568.t1
chr7.3 exon 40177371 40177501 40177371 ID=MS.gene84568.t1.exon6;Parent=MS.gene84568.t1
chr7.3 CDS 40177371 40177501 40177371 ID=cds.MS.gene84568.t1;Parent=MS.gene84568.t1
Gene Sequence

>MS.gene84568

ATGAAGATTTTGGTGTTATGGCAAACATGGGCTTTTGCTCTAATTTTATCTTCATTTATGGCTTCTGCTGCTACAGTTGAACGCACTTTCTTGGTAAGATTTTAATGTGTTTTCTTAGTGTTGACTAGTCTTAGTTACATGACATTTTATTCAATCAATCTTTCACTTCAACTCAATTCTCCACTTAGCTTACCCAATATAACTAATTGCAATCATTTCTCACGGTGTATATACTATGACATAAATTTTTGCAAGGTCGGTCCATAAGAAAGTGAGATTTATAATAATATTATATCTCATGTAAAAAGTTAGTTTTTGAATATTGTAAAGTAAATCTCAATATAACAAAATGAATTGTCCAAGTTGTAAATGATCAGGGTTTAATCTCCTATTATTCTAAAAAGATTATCAAAACTCTATAGAAAGGTTATTTTAAACTACTATATTTTTTTTCTCTTTATCTTTTTGCGAAGGTGGGTTGGGGAAACTGGAACTCACTATCAAAAGTTGAAGTGAATGAGTTCCAATTTCCCCGACCTAACACGTGGATTTCACTATATTTTCTTTTGGACAGCCAAGTAAAATTGGCTTCTAATGTTTTTTTTGGTACAATTTGTCTTTGAATTTTAGTATACTTTAATTTCATACTATTGAAATTGAATGAGTTGCAGGTTGAAAACAAGACTATTACACGATTGTGCCATGAACAAGTGATTGTTACAGTTAATGGACTTTACCCAGGTCCAAAGCTGGAAGTCAGGGATGGTGACTCTGTGATTGTTCATGTAATCAACAATTCACCTTACAATATAACAATTCACTGGTAAGCAATTTGATTAACATTAATTTATATGATATTGTTACATTTTTCAAACCTTTCACCAATTGAAGGCATTTTTTTTTTGCCAAATTTGGTTCGTCACAATTGAAAAATATGTCAAGTCTCTACATGTCTGATCCATGAGATGAGACATTATTTTTAACTTTCTTTGGTGGCTAAAAATACATCGCTTGAGATGAATAAACGGGAAATCCCGAGTTTAAACCCGAACCCTGTATATATAATACGATGTCTTTACTAACCGAGTTATGCTCAAGAGATCGACTTTATTTTTTATAAGCCAAAAAGCGAATTTAATTAGTCTTTGCTACAAAAATTTAAGCACAAGATGTGACCAAGACTAGTAAACCCAAGTATTAGAATAGATACATGACCAACTATTTCATTAAGTTGTAAACAAAAACAGAACACCACCATTAAAATCCAGAGAAAGAACTCATATATAATCTTAGCTATATATAATTTCACTAGAATTTTGCTATATCTTAAAAAATTAATGTCTAATTGTTTATGAATTTTTGAACTATGTAAAGGCATGGAGTGTTCCAGCTATATAGTGCATGGTCAGACGGTCCAGAATATATAACACAATGTCCAATTCGTCCTGAAAATAAATTTACATACAAATTTAATGTGACACAACAAGAAGGAACATTATGGTGGCATGCTCATGCATCAGTTGTACGTGCAACAGTTCATGGTGCCATTATCATTCAACCTCGTTCCGGTCGATTTCCATTTCCTAAACCCTACAAGGAAGTACCAATAATACTAGGTGATTGGTATGATGGAAATGTTGAGGAGATTATCCAAAAAGAACTCGAAACAGGCGATAAAATACCATCTGATGCGTTCACTATCAACGGCTTTCCTGGTGATCTCTTCAATTGTTCAAAAAATCGTATGTTTCTATTTCGGCATTCTCTAATTTATTGTAAATTAGACTTGTATACTCTAATTCATGTGTTATGTGTATAAAATATGACTTATGTATTTCAGAGATGTATAAGCTGAAAGTGAAGCAAGGAAAGACCTATTTGTTCCGAATGGTCAACGCTGCACTCGCAAACAATCTTTTCTTCAAGATTGCCGATCACAAATTCACAGTGGTAGCCATGGACGCCGCATACACCGAGCCCTATACCACCGATATAATCGTCATTGCAGCAGGCCAAAGTGCCGATATACTTTTCACAGCAGACCAACCAAAAGGTTCATACTACATGGCTGCATCACCTTATGTTGTTGGTGAACCAGTAGGACTCTTCGACAATTCCACAACTCGTGCCGTCGTCTTTTACGAGGGTCACAAAAAATTAAAAACAAAACATATAGTACCTTTGATGCCGGCATTACCACTTCACAACAATACACCAATAGCTCACAAATTTTTTAGCAACATAACTGGTCTTGTAGGGGGTCCTAATTGGGTCCCTGTCCCACTTGAAGTGGATGAACATATGTATATCACAATTAACATGGGTTTAGTACCTTGTCCTGTAAATGCTAAATGTACAGGTCCACTTGGACAAAAATTTGCATCTAGCATGAACAATGAGTCATTTTTGCTTCCTGTTGGAAAAGGATATTCCATAATGGAAGCATATTTTTACAATGTGAGTGGTATTTACACTACAGATTTTCCAGATAACCCTCCAAAATTTTTCGACTTCGTAAACCCGAAAATATTTTTGGATCCTAATGTTACATTTACACCGAAATCGACTAAGGTGAAGCAATTCAAATACAATTCAACGGTGGAGGTCGTGTTTCAAAATACAGCGATTTTGAATGCGCAAAGTCATCCCATGCATCTTCATGGTATGAATTTTCATGTTTTGGCTCAAGACTTCGGGATTTTCAATCCTACTACCGATAAACTCAAGTATAATTTGGTGAATCCTTCAATTCGCAACACGGTTGCTGTGCCGGTGGGAGGATGGGCTGCTATTAGATTCCGAACTGACAATCCTGGTATGTATAAGTATTTTATGTAACAACAGTTCACTTTTTTTTTTTTTTTTAAAAAAATTTATTAGTTACATAAATTTAGATAAGAAAAGTTTAATAGCTTACTAAAAATTTCTTGATTGTTTATTTTGGCAGGGGTATGGTTTTTGCATTGTCATGTGGATGATCATAATCTATGGGGACTAGTCACAGCATTCATAGTTGAAAATGGACCAACACCTTCAACTTCACTTGGTCCACCACCTGCTGATTTGCCTAAATGTTAA

Protein sequence

>MS.gene84568.t1

MKILVLWQTWAFALILSSFMASAATVERTFLVENKTITRLCHEQVIVTVNGLYPGPKLEVRDGDSVIVHVINNSPYNITIHWHGVFQLYSAWSDGPEYITQCPIRPENKFTYKFNVTQQEGTLWWHAHASVVRATVHGAIIIQPRSGRFPFPKPYKEEIIQKELETGDKIPSDAFTINGFPGDLFNCSKNQMYKLKVKQGKTYLFRMVNAALANNLFFKIADHKFTVVAMDAAYTEPYTTDIIVIAAGQSADILFTADQPKGSYYMAASPYVVGEPVGLFDNSTTRAVVFYEGHKKLKTKHIVPLMPALPLHNNTPIAHKFFSNITGLVGGPNWVPVPLEVDEHMYITINMGLVPCPVNAKCTGPLGQKFASSMNNESFLLPVGKGYSIMEAYFYNVSGIYTTDFPDNPPKFFDFVNPKIFLDPNVTFTPKSTKVKQFKYNSTVEVVFQNTAILNAQSHPMHLHGMNFHVLAQDFGIFNPTTDKLKYNLVNPSIRNTVAVPVGGWAAIRFRTDNPGVWFLHCHVDDHNLWGLVTAFIVENGPTPSTSLGPPPADLPKC