Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85312.t1 | XP_003595391.1 | 96.2 | 104 | 4 | 0 | 4 | 107 | 63 | 166 | 5.40E-49 | 203.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85312.t1 | P82195 | 81.7 | 104 | 19 | 0 | 4 | 107 | 63 | 166 | 1.4e-45 | 183.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85312.t1 | A2Q3Y9 | 96.2 | 104 | 4 | 0 | 4 | 107 | 63 | 166 | 3.9e-49 | 203.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene85312 | 0.808893 | 2.48E-50 | -1.69E-46 |
| MS.gene049389 | MS.gene85312 | 0.82336 | 1.44E-53 | -1.69E-46 |
| MS.gene049491 | MS.gene85312 | 0.850981 | 1.19E-60 | -1.69E-46 |
| MS.gene049614 | MS.gene85312 | 0.821626 | 3.65E-53 | -1.69E-46 |
| MS.gene049661 | MS.gene85312 | 0.820222 | 7.69E-53 | -1.69E-46 |
| MS.gene049662 | MS.gene85312 | 0.814583 | 1.43E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene85312 | 0.838004 | 3.72E-57 | -1.69E-46 |
| MS.gene050076 | MS.gene85312 | 0.821031 | 5.01E-53 | -1.69E-46 |
| MS.gene050099 | MS.gene85312 | 0.818853 | 1.58E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene85312 | 0.826969 | 2.03E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene85312 | 0.875826 | 2.27E-68 | -1.69E-46 |
| MS.gene050397 | MS.gene85312 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene85312 | 0.809276 | 2.05E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene85312 | 0.81463 | 1.40E-51 | -1.69E-46 |
| MS.gene050464 | MS.gene85312 | 0.800567 | 1.36E-48 | -1.69E-46 |
| MS.gene050767 | MS.gene85312 | 0.832056 | 1.17E-55 | -1.69E-46 |
| MS.gene050770 | MS.gene85312 | 0.834175 | 3.49E-56 | -1.69E-46 |
| MS.gene05101 | MS.gene85312 | 0.86664 | 2.46E-65 | -1.69E-46 |
| MS.gene051471 | MS.gene85312 | 0.849914 | 2.38E-60 | -1.69E-46 |
| MS.gene052078 | MS.gene85312 | 0.866267 | 3.23E-65 | -1.69E-46 |
| MS.gene052178 | MS.gene85312 | 0.840215 | 9.94E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene85312 | 0.834096 | 3.65E-56 | -1.69E-46 |
| MS.gene052253 | MS.gene85312 | 0.804888 | 1.74E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene85312 | 0.83202 | 1.20E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene85312 | 0.859612 | 3.67E-63 | -1.69E-46 |
| MS.gene052322 | MS.gene85312 | 0.80342 | 3.52E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene85312 | 0.83571 | 1.43E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene85312 | 0.840105 | 1.06E-57 | -1.69E-46 |
| MS.gene053073 | MS.gene85312 | 0.801131 | 1.04E-48 | -1.69E-46 |
| MS.gene053103 | MS.gene85312 | 0.826163 | 3.15E-54 | -1.69E-46 |
| MS.gene053209 | MS.gene85312 | 0.843847 | 1.09E-58 | -1.69E-46 |
| MS.gene053322 | MS.gene85312 | 0.819791 | 9.65E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene85312 | 0.824125 | 9.56E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene85312 | 0.827841 | 1.25E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene85312 | 0.805979 | 1.03E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene85312 | 0.843999 | 9.92E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene85312 | 0.827181 | 1.80E-54 | -1.69E-46 |
| MS.gene05455 | MS.gene85312 | 0.822072 | 2.88E-53 | -1.69E-46 |
| MS.gene054802 | MS.gene85312 | 0.809375 | 1.95E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene85312 | 0.807102 | 5.95E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene85312 | 0.81526 | 1.01E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene85312 | 0.827949 | 1.18E-54 | -1.69E-46 |
| MS.gene055254 | MS.gene85312 | 0.836195 | 1.08E-56 | -1.69E-46 |
| MS.gene055277 | MS.gene85312 | 0.840794 | 7.02E-58 | -1.69E-46 |
| MS.gene055390 | MS.gene85312 | 0.809956 | 1.46E-50 | -1.69E-46 |
| MS.gene055397 | MS.gene85312 | 0.803458 | 3.45E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene85312 | 0.864839 | 9.11E-65 | -1.69E-46 |
| MS.gene055428 | MS.gene85312 | 0.846504 | 2.08E-59 | -1.69E-46 |
| MS.gene056191 | MS.gene85312 | 0.830655 | 2.60E-55 | -1.69E-46 |
| MS.gene056314 | MS.gene85312 | 0.814498 | 1.49E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene85312 | 0.812893 | 3.37E-51 | -1.69E-46 |
| MS.gene056410 | MS.gene85312 | 0.830443 | 2.93E-55 | -1.69E-46 |
| MS.gene056609 | MS.gene85312 | 0.836162 | 1.10E-56 | -1.69E-46 |
| MS.gene056612 | MS.gene85312 | 0.831974 | 1.23E-55 | -1.69E-46 |
| MS.gene056719 | MS.gene85312 | 0.805724 | 1.16E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene85312 | 0.822117 | 2.81E-53 | -1.69E-46 |
| MS.gene057123 | MS.gene85312 | 0.842438 | 2.59E-58 | -1.69E-46 |
| MS.gene057295 | MS.gene85312 | 0.849705 | 2.72E-60 | -1.69E-46 |
| MS.gene05733 | MS.gene85312 | 0.854639 | 1.08E-61 | -1.69E-46 |
| MS.gene057439 | MS.gene85312 | 0.808692 | 2.73E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene85312 | 0.813261 | 2.80E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene85312 | 0.844248 | 8.50E-59 | -1.69E-46 |
| MS.gene058082 | MS.gene85312 | 0.819022 | 1.44E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene85312 | 0.844045 | 9.64E-59 | -1.69E-46 |
| MS.gene058293 | MS.gene85312 | 0.849387 | 3.34E-60 | -1.69E-46 |
| MS.gene058365 | MS.gene85312 | 0.811426 | 7.04E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene85312 | 0.855898 | 4.63E-62 | -1.69E-46 |
| MS.gene058928 | MS.gene85312 | 0.81561 | 8.47E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene85312 | 0.838363 | 3.01E-57 | -1.69E-46 |
| MS.gene059326 | MS.gene85312 | 0.829033 | 6.45E-55 | -1.69E-46 |
| MS.gene059342 | MS.gene85312 | 0.8017 | 7.95E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene85312 | 0.836799 | 7.57E-57 | -1.69E-46 |
| MS.gene059597 | MS.gene85312 | 0.879801 | 9.26E-70 | -1.69E-46 |
| MS.gene059676 | MS.gene85312 | 0.848039 | 7.90E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene85312 | 0.850565 | 1.56E-60 | -1.69E-46 |
| MS.gene059692 | MS.gene85312 | 0.867796 | 1.05E-65 | -1.69E-46 |
| MS.gene059695 | MS.gene85312 | 0.867437 | 1.37E-65 | -1.69E-46 |
| MS.gene05984 | MS.gene85312 | 0.816932 | 4.28E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene85312 | 0.86627 | 3.22E-65 | -1.69E-46 |
| MS.gene059960 | MS.gene85312 | 0.807652 | 4.55E-50 | -1.69E-46 |
| MS.gene059974 | MS.gene85312 | 0.822485 | 2.31E-53 | -1.69E-46 |
| MS.gene060005 | MS.gene85312 | 0.818127 | 2.30E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene85312 | 0.856801 | 2.52E-62 | -1.69E-46 |
| MS.gene061049 | MS.gene85312 | 0.862879 | 3.71E-64 | -1.69E-46 |
| MS.gene061200 | MS.gene85312 | 0.804509 | 2.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85312.t1 | MTR_2g044920 | 96.154 | 104 | 4 | 0 | 4 | 107 | 63 | 166 | 5.01e-72 | 211 |
| MS.gene85312.t1 | MTR_2g044920 | 94.643 | 56 | 3 | 0 | 4 | 59 | 63 | 118 | 6.00e-34 | 114 |
| MS.gene85312.t1 | MTR_5g041290 | 35.922 | 103 | 62 | 2 | 4 | 105 | 64 | 163 | 1.40e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85312.t1 | AT1G48350 | 81.731 | 104 | 19 | 0 | 4 | 107 | 67 | 170 | 3.63e-61 | 184 |
| MS.gene85312.t1 | AT1G14205 | 39.000 | 100 | 57 | 2 | 7 | 105 | 71 | 167 | 1.14e-14 | 66.2 |
| MS.gene85312.t1 | AT3G17626 | 71.053 | 38 | 11 | 0 | 54 | 91 | 10 | 47 | 8.33e-14 | 60.8 |
Find 28 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAATCCTGTCTGGAAAT+AGG | 0.169851 | 2.4:+45473725 | MS.gene85312:CDS |
| CACAGACAATCTTGGTCTTT+CGG | 0.279312 | 2.4:-45472677 | None:intergenic |
| ACAGACAATCTTGGTCTTTC+GGG | 0.288767 | 2.4:-45472676 | None:intergenic |
| CAAAATCCTGTCTGGAAATA+GGG | 0.298158 | 2.4:+45473726 | MS.gene85312:CDS |
| TTGGACAAAGAGATGCTTGT+TGG | 0.418067 | 2.4:-45472707 | None:intergenic |
| GCTTTAACACGGCCATGGTA+TGG | 0.425794 | 2.4:-45473782 | None:intergenic |
| TATCAGGAACTTACAATTGT+AGG | 0.452312 | 2.4:-45472817 | None:intergenic |
| AATCATTGCAAAATCCTGTC+TGG | 0.467654 | 2.4:+45473718 | MS.gene85312:CDS |
| TGTGATCCCTATTTCCAGAC+AGG | 0.474164 | 2.4:-45473732 | None:intergenic |
| GATCGAAACACAGACAATCT+TGG | 0.494991 | 2.4:-45472685 | None:intergenic |
| CTTTAACACGGCCATGGTAT+GGG | 0.511001 | 2.4:-45473781 | None:intergenic |
| GAAGAGTTGAACTTCACCTC+TGG | 0.512553 | 2.4:+45472793 | MS.gene85312:CDS |
| TCTTGGTGTCGTCAATCACT+TGG | 0.549933 | 2.4:-45472726 | None:intergenic |
| GCTGATGCAGCTCGCGAACA+TGG | 0.565784 | 2.4:+45473809 | MS.gene85312:CDS |
| ACAAAGGTAGCCTTTGACAG+AGG | 0.569891 | 2.4:+45473752 | MS.gene85312:CDS |
| TGGGTAACCACCTCTGTCAA+AGG | 0.571658 | 2.4:-45473762 | None:intergenic |
| TGAAGCAAGTGTATGCATCT+TGG | 0.577835 | 2.4:-45472743 | None:intergenic |
| GCTTCAGGAAGTAGCAAAGA+GGG | 0.581508 | 2.4:+45473688 | MS.gene85312:intron |
| TTCAGCTTCAACAATGCAGA+AGG | 0.583407 | 2.4:+45472762 | MS.gene85312:CDS |
| AAGGTAGCCTTTGACAGAGG+TGG | 0.614954 | 2.4:+45473755 | MS.gene85312:CDS |
| CAATAGCTTTAACACGGCCA+TGG | 0.626600 | 2.4:-45473787 | None:intergenic |
| CATCAGCAATAGCTTTAACA+CGG | 0.638165 | 2.4:-45473793 | None:intergenic |
| TGCTTCAGGAAGTAGCAAAG+AGG | 0.655766 | 2.4:+45473687 | MS.gene85312:intron |
| TCAGGAAGTAGCAAAGAGGG+TGG | 0.657714 | 2.4:+45473691 | MS.gene85312:intron |
| CAGGAAGTAGCAAAGAGGGT+GGG | 0.658309 | 2.4:+45473692 | MS.gene85312:intron |
| ACTTACAATTGTAGGACCAG+AGG | 0.688517 | 2.4:-45472809 | None:intergenic |
| AGAGGTGGTTACCCATACCA+TGG | 0.695112 | 2.4:+45473770 | MS.gene85312:CDS |
| TCTGGAAATAGGGATCACAA+AGG | 0.730190 | 2.4:+45473736 | MS.gene85312:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTAGTTATTACCAT+TGG | - | chr2.4:45473275-45473294 | None:intergenic | 15.0% |
| !! | TAATAAGTATTTAGGAAAAA+AGG | - | chr2.4:45472947-45472966 | None:intergenic | 15.0% |
| !!! | ATGACTTTTAATAAGTATTT+AGG | - | chr2.4:45472955-45472974 | None:intergenic | 15.0% |
| !! | TCTACGATTTAATAATGAAA+GGG | - | chr2.4:45473520-45473539 | None:intergenic | 20.0% |
| !! | TTCTACGATTTAATAATGAA+AGG | - | chr2.4:45473521-45473540 | None:intergenic | 20.0% |
| !!! | AGGAATTTTTATTATCATCA+CGG | - | chr2.4:45472927-45472946 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTATGCATTGTTA+TGG | - | chr2.4:45472985-45473004 | None:intergenic | 20.0% |
| ! | ATATACTCAAGGAAACTAAA+AGG | - | chr2.4:45473207-45473226 | None:intergenic | 25.0% |
| ! | ATATGTTCAGTAGCTATTAT+GGG | - | chr2.4:45473333-45473352 | None:intergenic | 25.0% |
| ! | ATGAAGTAGTAATAATATGC+AGG | - | chr2.4:45473064-45473083 | None:intergenic | 25.0% |
| ! | TTAGTTATTACCATTGGAAA+TGG | - | chr2.4:45473269-45473288 | None:intergenic | 25.0% |
| ! | TTTATTATCATCACGGAATA+GGG | - | chr2.4:45472920-45472939 | None:intergenic | 25.0% |
| !! | TTCATTTTCATTGATCACAA+GGG | + | chr2.4:45473305-45473324 | MS.gene85312:intron | 25.0% |
| !! | TTTCATTTTCATTGATCACA+AGG | + | chr2.4:45473304-45473323 | MS.gene85312:intron | 25.0% |
| !! | TTTTATTATCATCACGGAAT+AGG | - | chr2.4:45472921-45472940 | None:intergenic | 25.0% |
| !!! | ATTCCAGGACTTTTTTTTTA+AGG | - | chr2.4:45473413-45473432 | None:intergenic | 25.0% |
| AAAACTAAACACTGATCACA+GGG | + | chr2.4:45472996-45473015 | MS.gene85312:intron | 30.0% | |
| AATAAGTTCAACCAAGCAAA+TGG | + | chr2.4:45473438-45473457 | MS.gene85312:intron | 30.0% | |
| ATGCTTCTGTAATATACTCA+AGG | - | chr2.4:45473218-45473237 | None:intergenic | 30.0% | |
| ATTTGCTTGGTTGAACTTAT+TGG | - | chr2.4:45473439-45473458 | None:intergenic | 30.0% | |
| CATATGTTCAGTAGCTATTA+TGG | - | chr2.4:45473334-45473353 | None:intergenic | 30.0% | |
| GTTCCTTAAAAAAAAAGTCC+TGG | + | chr2.4:45473407-45473426 | MS.gene85312:intron | 30.0% | |
| TAAAACTAAACACTGATCAC+AGG | + | chr2.4:45472995-45473014 | MS.gene85312:intron | 30.0% | |
| TAATAGCTACTGAACATATG+AGG | + | chr2.4:45473334-45473353 | MS.gene85312:intron | 30.0% | |
| TATCAGGAACTTACAATTGT+AGG | - | chr2.4:45472820-45472839 | None:intergenic | 30.0% | |
| TATGTTCAGTAGCTATTATG+GGG | - | chr2.4:45473332-45473351 | None:intergenic | 30.0% | |
| TTAGCCAAAAGGTTTATTCT+TGG | + | chr2.4:45473132-45473151 | MS.gene85312:intron | 30.0% | |
| TTATTATCATCACGGAATAG+GGG | - | chr2.4:45472919-45472938 | None:intergenic | 30.0% | |
| TTCTTTACCTATTAGCCAAA+AGG | + | chr2.4:45473121-45473140 | MS.gene85312:intron | 30.0% | |
| TTGACATAGAAGTTAAACCA+TGG | + | chr2.4:45473170-45473189 | MS.gene85312:intron | 30.0% | |
| ! | AAGTTCTTTTCCATTTCCAA+TGG | + | chr2.4:45473256-45473275 | MS.gene85312:intron | 30.0% |
| ! | AATTTTCGTTTACCGAATGA+CGG | + | chr2.4:45473642-45473661 | MS.gene85312:intron | 30.0% |
| ! | AGAAAGTTCTAATTGAGCAT+AGG | + | chr2.4:45473537-45473556 | MS.gene85312:intron | 30.0% |
| ! | ATACAACAAGCTTTTAAGCA+AGG | - | chr2.4:45473606-45473625 | None:intergenic | 30.0% |
| ! | CTATCCAAGAATAAACCTTT+TGG | - | chr2.4:45473139-45473158 | None:intergenic | 30.0% |
| ! | TACAACAAGCTTTTAAGCAA+GGG | - | chr2.4:45473605-45473624 | None:intergenic | 30.0% |
| !! | CAACATCTTTCTTTGAAATC+TGG | - | chr2.4:45473040-45473059 | None:intergenic | 30.0% |
| !! | GAATAAACCTTTTGGCTAAT+AGG | - | chr2.4:45473131-45473150 | None:intergenic | 30.0% |
| AAAAGAACTTCAGGATGCAA+AGG | - | chr2.4:45473246-45473265 | None:intergenic | 35.0% | |
| AAAGAACTTCAGGATGCAAA+GGG | - | chr2.4:45473245-45473264 | None:intergenic | 35.0% | |
| AATCATTGCAAAATCCTGTC+TGG | + | chr2.4:45473718-45473737 | MS.gene85312:CDS | 35.0% | |
| CAAAATCCTGTCTGGAAATA+GGG | + | chr2.4:45473726-45473745 | MS.gene85312:CDS | 35.0% | |
| CAATACAGTTTGAAAGGATC+AGG | - | chr2.4:45473669-45473688 | None:intergenic | 35.0% | |
| CTGAAGCAATACAGTTTGAA+AGG | - | chr2.4:45473675-45473694 | None:intergenic | 35.0% | |
| CTTTCAAACTGTATTGCTTC+AGG | + | chr2.4:45473673-45473692 | MS.gene85312:intron | 35.0% | |
| TAATTTAACTCCTGCCAGAT+TGG | + | chr2.4:45472862-45472881 | MS.gene85312:intron | 35.0% | |
| TAGAAGTTAAACCATGGAGA+AGG | + | chr2.4:45473176-45473195 | MS.gene85312:intron | 35.0% | |
| TGAACTTATTGGTAGATTCC+AGG | - | chr2.4:45473428-45473447 | None:intergenic | 35.0% | |
| TGGAAATGGAAAAGAACTTC+AGG | - | chr2.4:45473255-45473274 | None:intergenic | 35.0% | |
| ! | TTTTAAGCAAGGGAGATTGA+GGG | - | chr2.4:45473595-45473614 | None:intergenic | 35.0% |
| !! | CATCAGCAATAGCTTTAACA+CGG | - | chr2.4:45473796-45473815 | None:intergenic | 35.0% |
| ACTTACAATTGTAGGACCAG+AGG | - | chr2.4:45472812-45472831 | None:intergenic | 40.0% | |
| ATATCGTGGATTTCTACGAC+AGG | + | chr2.4:45473384-45473403 | MS.gene85312:intron | 40.0% | |
| GATCGAAACACAGACAATCT+TGG | - | chr2.4:45472688-45472707 | None:intergenic | 40.0% | |
| GCAAAATCCTGTCTGGAAAT+AGG | + | chr2.4:45473725-45473744 | MS.gene85312:CDS | 40.0% | |
| GTTGTTGAAGACCATTTGCT+TGG | - | chr2.4:45473452-45473471 | None:intergenic | 40.0% | |
| TATCGTGGATTTCTACGACA+GGG | + | chr2.4:45473385-45473404 | MS.gene85312:intron | 40.0% | |
| TCTGGAAATAGGGATCACAA+AGG | + | chr2.4:45473736-45473755 | MS.gene85312:CDS | 40.0% | |
| TGAAGCAAGTGTATGCATCT+TGG | - | chr2.4:45472746-45472765 | None:intergenic | 40.0% | |
| TGTCGTAGAAATCCACGATA+TGG | - | chr2.4:45473385-45473404 | None:intergenic | 40.0% | |
| TTCAGCTTCAACAATGCAGA+AGG | + | chr2.4:45472762-45472781 | MS.gene85312:CDS | 40.0% | |
| TTGGACAAAGAGATGCTTGT+TGG | - | chr2.4:45472710-45472729 | None:intergenic | 40.0% | |
| ! | ACAGACAATCTTGGTCTTTC+GGG | - | chr2.4:45472679-45472698 | None:intergenic | 40.0% |
| ! | CACAGACAATCTTGGTCTTT+CGG | - | chr2.4:45472680-45472699 | None:intergenic | 40.0% |
| ! | CTTTTAAGCAAGGGAGATTG+AGG | - | chr2.4:45473596-45473615 | None:intergenic | 40.0% |
| ! | GAGAAACGTAAAAGCGTATC+AGG | - | chr2.4:45472836-45472855 | None:intergenic | 40.0% |
| AAAAGGTTGCTCCTTCTCCA+TGG | - | chr2.4:45473190-45473209 | None:intergenic | 45.0% | |
| AAAGGATCAGGACCGTCATT+CGG | - | chr2.4:45473657-45473676 | None:intergenic | 45.0% | |
| ACAAAGGTAGCCTTTGACAG+AGG | + | chr2.4:45473752-45473771 | MS.gene85312:CDS | 45.0% | |
| ACACAACACTGAGTCCAATC+TGG | - | chr2.4:45472879-45472898 | None:intergenic | 45.0% | |
| CTTTAACACGGCCATGGTAT+GGG | - | chr2.4:45473784-45473803 | None:intergenic | 45.0% | |
| GAAGAGTTGAACTTCACCTC+TGG | + | chr2.4:45472793-45472812 | MS.gene85312:CDS | 45.0% | |
| GCTTCAGGAAGTAGCAAAGA+GGG | + | chr2.4:45473688-45473707 | MS.gene85312:intron | 45.0% | |
| TGCTTCAGGAAGTAGCAAAG+AGG | + | chr2.4:45473687-45473706 | MS.gene85312:intron | 45.0% | |
| TGTGATCCCTATTTCCAGAC+AGG | - | chr2.4:45473735-45473754 | None:intergenic | 45.0% | |
| ! | GCAATGACTTGAAAGCACAG+TGG | + | chr2.4:45473356-45473375 | MS.gene85312:intron | 45.0% |
| !! | CAATAGCTTTAACACGGCCA+TGG | - | chr2.4:45473790-45473809 | None:intergenic | 45.0% |
| !! | TCTTGGTGTCGTCAATCACT+TGG | - | chr2.4:45472729-45472748 | None:intergenic | 45.0% |
| AACACTGAGTCCAATCTGGC+AGG | - | chr2.4:45472875-45472894 | None:intergenic | 50.0% | |
| AAGGTAGCCTTTGACAGAGG+TGG | + | chr2.4:45473755-45473774 | MS.gene85312:CDS | 50.0% | |
| AGAGGTGGTTACCCATACCA+TGG | + | chr2.4:45473770-45473789 | MS.gene85312:CDS | 50.0% | |
| CAGGAAGTAGCAAAGAGGGT+GGG | + | chr2.4:45473692-45473711 | MS.gene85312:intron | 50.0% | |
| GATCACAGGGATGATCACGA+GGG | + | chr2.4:45473009-45473028 | MS.gene85312:intron | 50.0% | |
| GCTTTAACACGGCCATGGTA+TGG | - | chr2.4:45473785-45473804 | None:intergenic | 50.0% | |
| TCAGGAAGTAGCAAAGAGGG+TGG | + | chr2.4:45473691-45473710 | MS.gene85312:intron | 50.0% | |
| TGATCACAGGGATGATCACG+AGG | + | chr2.4:45473008-45473027 | MS.gene85312:intron | 50.0% | |
| TGGGTAACCACCTCTGTCAA+AGG | - | chr2.4:45473765-45473784 | None:intergenic | 50.0% | |
| GCACAGTGGCTACCATATCG+TGG | + | chr2.4:45473370-45473389 | MS.gene85312:intron | 55.0% | |
| GCTGATGCAGCTCGCGAACA+TGG | + | chr2.4:45473809-45473828 | MS.gene85312:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 45472652 | 45473844 | 45472652 | ID=MS.gene85312 |
| chr2.4 | mRNA | 45472652 | 45473844 | 45472652 | ID=MS.gene85312.t1;Parent=MS.gene85312 |
| chr2.4 | exon | 45472652 | 45472825 | 45472652 | ID=MS.gene85312.t1.exon1;Parent=MS.gene85312.t1 |
| chr2.4 | CDS | 45472652 | 45472825 | 45472652 | ID=cds.MS.gene85312.t1;Parent=MS.gene85312.t1 |
| chr2.4 | exon | 45473695 | 45473844 | 45473695 | ID=MS.gene85312.t1.exon2;Parent=MS.gene85312.t1 |
| chr2.4 | CDS | 45473695 | 45473844 | 45473695 | ID=cds.MS.gene85312.t1;Parent=MS.gene85312.t1 |
| Gene Sequence |
| Protein sequence |
