Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88427.t1 | XP_003627978.1 | 97.5 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 5.30E-61 | 243.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88427.t1 | Q9SGA6 | 82.5 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 1.8e-57 | 223.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88427.t1 | B7FHE5 | 97.5 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 3.8e-61 | 243.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene88427 | 0.800298 | 1.54E-48 | -1.69E-46 |
| MS.gene050114 | MS.gene88427 | 0.825034 | 5.84E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene88427 | 0.87652 | 1.31E-68 | -1.69E-46 |
| MS.gene050320 | MS.gene88427 | 0.876324 | 1.53E-68 | -1.69E-46 |
| MS.gene050752 | MS.gene88427 | 0.806039 | 9.98E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene88427 | 0.88186 | 1.69E-70 | -1.69E-46 |
| MS.gene051063 | MS.gene88427 | 0.83806 | 3.60E-57 | -1.69E-46 |
| MS.gene051233 | MS.gene88427 | 0.807121 | 5.90E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene88427 | 0.809374 | 1.95E-50 | -1.69E-46 |
| MS.gene051330 | MS.gene88427 | 0.84696 | 1.56E-59 | -1.69E-46 |
| MS.gene051451 | MS.gene88427 | 0.804449 | 2.15E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene88427 | 0.895976 | 5.74E-76 | -1.69E-46 |
| MS.gene051748 | MS.gene88427 | 0.904906 | 7.52E-80 | -1.69E-46 |
| MS.gene051756 | MS.gene88427 | 0.853136 | 2.92E-61 | -1.69E-46 |
| MS.gene051850 | MS.gene88427 | 0.894522 | 2.28E-75 | -1.69E-46 |
| MS.gene051903 | MS.gene88427 | 0.910005 | 3.04E-82 | -1.69E-46 |
| MS.gene052133 | MS.gene88427 | 0.812728 | 3.66E-51 | -1.69E-46 |
| MS.gene052818 | MS.gene88427 | -0.812143 | 4.92E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene88427 | 0.869848 | 2.28E-66 | -1.69E-46 |
| MS.gene053058 | MS.gene88427 | 0.822213 | 2.67E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene88427 | 0.885714 | 6.41E-72 | -1.69E-46 |
| MS.gene053952 | MS.gene88427 | 0.881326 | 2.63E-70 | -1.69E-46 |
| MS.gene054403 | MS.gene88427 | 0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene054937 | MS.gene88427 | 0.81326 | 2.80E-51 | -1.69E-46 |
| MS.gene055174 | MS.gene88427 | 0.827006 | 1.99E-54 | -1.69E-46 |
| MS.gene055424 | MS.gene88427 | 0.860499 | 1.98E-63 | -1.69E-46 |
| MS.gene055441 | MS.gene88427 | 0.810469 | 1.13E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene88427 | -0.809691 | 1.67E-50 | -1.69E-46 |
| MS.gene055780 | MS.gene88427 | 0.818365 | 2.04E-52 | -1.69E-46 |
| MS.gene056075 | MS.gene88427 | 0.856974 | 2.24E-62 | -1.69E-46 |
| MS.gene056432 | MS.gene88427 | 0.835786 | 1.37E-56 | -1.69E-46 |
| MS.gene056580 | MS.gene88427 | 0.805619 | 1.22E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene88427 | 0.804599 | 2.00E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene88427 | 0.862809 | 3.90E-64 | -1.69E-46 |
| MS.gene056752 | MS.gene88427 | 0.819615 | 1.06E-52 | -1.69E-46 |
| MS.gene056992 | MS.gene88427 | 0.823837 | 1.12E-53 | -1.69E-46 |
| MS.gene057057 | MS.gene88427 | 0.821557 | 3.79E-53 | -1.69E-46 |
| MS.gene057094 | MS.gene88427 | 0.941086 | 7.65E-101 | -1.69E-46 |
| MS.gene057234 | MS.gene88427 | 0.847172 | 1.37E-59 | -1.69E-46 |
| MS.gene057452 | MS.gene88427 | -0.806705 | 7.23E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene88427 | 0.801953 | 7.06E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene88427 | 0.801361 | 9.34E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene88427 | 0.821026 | 5.02E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene88427 | 0.800308 | 1.53E-48 | -1.69E-46 |
| MS.gene058055 | MS.gene88427 | 0.828332 | 9.53E-55 | -1.69E-46 |
| MS.gene058074 | MS.gene88427 | 0.828521 | 8.58E-55 | -1.69E-46 |
| MS.gene05809 | MS.gene88427 | 0.80086 | 1.18E-48 | -1.69E-46 |
| MS.gene058238 | MS.gene88427 | 0.855722 | 5.21E-62 | -1.69E-46 |
| MS.gene058364 | MS.gene88427 | 0.811639 | 6.33E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene88427 | 0.817157 | 3.81E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene88427 | 0.836797 | 7.58E-57 | -1.69E-46 |
| MS.gene059171 | MS.gene88427 | 0.816866 | 4.43E-52 | -1.69E-46 |
| MS.gene059726 | MS.gene88427 | 0.834972 | 2.20E-56 | -1.69E-46 |
| MS.gene059898 | MS.gene88427 | 0.81126 | 7.65E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene88427 | 0.917867 | 3.14E-86 | -1.69E-46 |
| MS.gene06011 | MS.gene88427 | 0.840894 | 6.60E-58 | -1.69E-46 |
| MS.gene060463 | MS.gene88427 | 0.822028 | 2.95E-53 | -1.69E-46 |
| MS.gene060465 | MS.gene88427 | 0.829197 | 5.89E-55 | -1.69E-46 |
| MS.gene060702 | MS.gene88427 | 0.800582 | 1.35E-48 | -1.69E-46 |
| MS.gene060763 | MS.gene88427 | 0.816509 | 5.33E-52 | -1.69E-46 |
| MS.gene061145 | MS.gene88427 | 0.848188 | 7.19E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88427.t1 | MTR_8g040740 | 97.500 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 1.38e-86 | 248 |
| MS.gene88427.t1 | MTR_3g013635 | 89.167 | 120 | 13 | 0 | 1 | 120 | 1 | 120 | 1.91e-82 | 238 |
| MS.gene88427.t1 | MTR_3g013635 | 89.167 | 120 | 13 | 0 | 1 | 120 | 1 | 120 | 1.91e-82 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88427.t1 | AT3G02080 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 9.43e-78 | 226 |
| MS.gene88427.t1 | AT5G61170 | 81.667 | 120 | 22 | 0 | 1 | 120 | 1 | 120 | 1.92e-77 | 225 |
| MS.gene88427.t1 | AT5G15520 | 81.667 | 120 | 22 | 0 | 1 | 120 | 1 | 120 | 1.50e-76 | 223 |
Find 35 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATTCCAAAGGATTTA+TGG | 0.171916 | 8.3:+57332449 | MS.gene88427:CDS |
| AACTGCAAAATTCAAAGAAT+TGG | 0.319374 | 8.3:+57332224 | MS.gene88427:CDS |
| ATAATACCAATCAGGATCAT+AGG | 0.347366 | 8.3:-57332250 | None:intergenic |
| GGCTCCCACCATAAATCCTT+TGG | 0.389483 | 8.3:-57332457 | None:intergenic |
| ATCTACATAAGAGGTGGTCT+TGG | 0.438641 | 8.3:+57332422 | MS.gene88427:CDS |
| ATACCTTGCCAGATCGTTTG+AGG | 0.455890 | 8.3:-57330620 | None:intergenic |
| ATAAGAGGTGGTCTTGGTGT+TGG | 0.461154 | 8.3:+57332428 | MS.gene88427:CDS |
| GTACTCAATTTCAGCTTCCA+TGG | 0.471471 | 8.3:+57332391 | MS.gene88427:intron |
| TGGCTCCCTATGATCCTGAT+TGG | 0.474063 | 8.3:+57332244 | MS.gene88427:CDS |
| GCTCTAACATAATACCAATC+AGG | 0.489642 | 8.3:-57332258 | None:intergenic |
| TTGGTGTTGGTTCATTCCAA+AGG | 0.500013 | 8.3:+57332441 | MS.gene88427:CDS |
| TATGTAGATCTTCCTTGCCA+TGG | 0.510578 | 8.3:-57332408 | None:intergenic |
| GAGGGCGACTTCCATTCCTC+TGG | 0.516528 | 8.3:-57332478 | None:intergenic |
| CACAGTCTTTGAAGAAGCCA+TGG | 0.527750 | 8.3:-57330553 | None:intergenic |
| TCAGCTCACCTCAAACGATC+TGG | 0.531576 | 8.3:+57330612 | MS.gene88427:CDS |
| TAATACCAATCAGGATCATA+GGG | 0.537599 | 8.3:-57332249 | None:intergenic |
| CAATTTCAGCTTCCATGGCA+AGG | 0.544710 | 8.3:+57332396 | MS.gene88427:intron |
| GCAAGGAAGATCTACATAAG+AGG | 0.554507 | 8.3:+57332413 | MS.gene88427:CDS |
| TCGTCACATTCTTCAACAGT+TGG | 0.571334 | 8.3:+57332532 | MS.gene88427:CDS |
| CATTCCAAAGGATTTATGGT+GGG | 0.572274 | 8.3:+57332453 | MS.gene88427:CDS |
| GGATTTATGGTGGGAGCCAG+AGG | 0.572742 | 8.3:+57332462 | MS.gene88427:CDS |
| GATTGGTATTATGTTAGAGC+TGG | 0.573765 | 8.3:+57332261 | MS.gene88427:CDS |
| TTCACCTCACGAATTTGTCA+AGG | 0.581822 | 8.3:+57330584 | MS.gene88427:CDS |
| GAACATGAACCTCATCGAGA+TGG | 0.583253 | 8.3:+57332556 | MS.gene88427:CDS |
| TCATCGAGATGGATACCAAA+GGG | 0.584221 | 8.3:+57332567 | MS.gene88427:CDS |
| GGCTTCTTCAAAGACTGTGA+AGG | 0.599425 | 8.3:+57330557 | MS.gene88427:CDS |
| TATGGTGGGAGCCAGAGGAA+TGG | 0.616028 | 8.3:+57332467 | MS.gene88427:CDS |
| TCATTCCAAAGGATTTATGG+TGG | 0.619819 | 8.3:+57332452 | MS.gene88427:CDS |
| TTGACAAGATCAGTCCACTC+AGG | 0.623178 | 8.3:-57332201 | None:intergenic |
| AATAGTTGGAGCTGCCTGAG+TGG | 0.627148 | 8.3:+57332187 | MS.gene88427:intron |
| TCACCTCAAACGATCTGGCA+AGG | 0.628596 | 8.3:+57330617 | MS.gene88427:CDS |
| CTCATCGAGATGGATACCAA+AGG | 0.653842 | 8.3:+57332566 | MS.gene88427:CDS |
| AGGAAGATCTACATAAGAGG+TGG | 0.658844 | 8.3:+57332416 | MS.gene88427:CDS |
| CTTTGGTATCCATCTCGATG+AGG | 0.659041 | 8.3:-57332565 | None:intergenic |
| TAAGCCTTGACAAATTCGTG+AGG | 0.721929 | 8.3:-57330588 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCAGTTTTTTTTATTAT+AGG | + | chr8.3:57330931-57330950 | MS.gene88427:intron | 10.0% |
| !!! | CAATTTATTAAACTTTTTGT+TGG | - | chr8.3:57331265-57331284 | None:intergenic | 15.0% |
| !!! | TAAGTTTTATGATACTTTTT+TGG | + | chr8.3:57331391-57331410 | MS.gene88427:intron | 15.0% |
| !!! | TGTTTCAAATTTTTTTCATA+GGG | - | chr8.3:57331625-57331644 | None:intergenic | 15.0% |
| !!! | TTGTTTCAAATTTTTTTCAT+AGG | - | chr8.3:57331626-57331645 | None:intergenic | 15.0% |
| !!! | TTTTTATATTAACCTTCTTT+TGG | + | chr8.3:57330734-57330753 | MS.gene88427:intron | 15.0% |
| !! | AAATTATCAGTTGTTTATTG+CGG | + | chr8.3:57331561-57331580 | MS.gene88427:intron | 20.0% |
| !! | AACTAAAAAAAACCAAAAGA+AGG | - | chr8.3:57330749-57330768 | None:intergenic | 20.0% |
| !! | ACAAAACAAAGAAAAATTGA+TGG | - | chr8.3:57330695-57330714 | None:intergenic | 20.0% |
| !! | ATATAAGTTGCATATCTAAA+AGG | + | chr8.3:57331502-57331521 | MS.gene88427:intron | 20.0% |
| !! | CAAAACAAAGAAAAATTGAT+GGG | - | chr8.3:57330694-57330713 | None:intergenic | 20.0% |
| !! | CAAATAACAAAACCAAATAA+GGG | - | chr8.3:57332104-57332123 | None:intergenic | 20.0% |
| !! | TCAAATAACAAAACCAAATA+AGG | - | chr8.3:57332105-57332124 | None:intergenic | 20.0% |
| !!! | AAAATACAGACTGTTTTTTA+AGG | + | chr8.3:57331664-57331683 | MS.gene88427:intron | 20.0% |
| !!! | GCTTAGTTTTTTTTTTTTGA+AGG | - | chr8.3:57331723-57331742 | None:intergenic | 20.0% |
| !!! | GTTTCAAATTTTTTTCATAG+GGG | - | chr8.3:57331624-57331643 | None:intergenic | 20.0% |
| !!! | TTCTTTTGATTCTAAATAGT+TGG | + | chr8.3:57332173-57332192 | MS.gene88427:intron | 20.0% |
| !!! | TTTCAAATTTTTTTCATAGG+GGG | - | chr8.3:57331623-57331642 | None:intergenic | 20.0% |
| !!! | TTTTCTTTGTTTTGTGAAAT+GGG | + | chr8.3:57330700-57330719 | MS.gene88427:intron | 20.0% |
| !!! | TTTTTCTTTGTTTTGTGAAA+TGG | + | chr8.3:57330699-57330718 | MS.gene88427:intron | 20.0% |
| ! | AACATGATACTTCTAATTCT+TGG | + | chr8.3:57332327-57332346 | MS.gene88427:intron | 25.0% |
| ! | AACTCAACTAAAAAACCAAA+AGG | - | chr8.3:57331171-57331190 | None:intergenic | 25.0% |
| ! | AACTGCAAAATTCAAAGAAT+TGG | + | chr8.3:57332224-57332243 | MS.gene88427:CDS | 25.0% |
| ! | ACTCAACTAAAAAACCAAAA+GGG | - | chr8.3:57331170-57331189 | None:intergenic | 25.0% |
| ! | TCAGTGAAATAATCACAAAA+GGG | - | chr8.3:57331752-57331771 | None:intergenic | 25.0% |
| !! | GTTAGATATTATTGTTGCTT+AGG | + | chr8.3:57330809-57330828 | MS.gene88427:intron | 25.0% |
| !!! | CAACTAGTTTTATAGGTTTA+GGG | + | chr8.3:57331330-57331349 | MS.gene88427:intron | 25.0% |
| !!! | CTATCTTCAACTAGTTTTAT+AGG | + | chr8.3:57331323-57331342 | MS.gene88427:intron | 25.0% |
| !!! | CTTGTTTTTGGGATTATTTT+TGG | + | chr8.3:57331782-57331801 | MS.gene88427:intron | 25.0% |
| !!! | GTTTGGATTAGCTTATTTTA+AGG | + | chr8.3:57330905-57330924 | MS.gene88427:intron | 25.0% |
| !!! | TACAGTTTAATGCTTGTTTT+TGG | + | chr8.3:57331093-57331112 | MS.gene88427:intron | 25.0% |
| !!! | TCAACTAGTTTTATAGGTTT+AGG | + | chr8.3:57331329-57331348 | MS.gene88427:intron | 25.0% |
| AACACACATGACTCATTAAT+TGG | - | chr8.3:57331237-57331256 | None:intergenic | 30.0% | |
| ACTCTTCAATCAACATCAAA+CGG | - | chr8.3:57332028-57332047 | None:intergenic | 30.0% | |
| ATAATACCAATCAGGATCAT+AGG | - | chr8.3:57332253-57332272 | None:intergenic | 30.0% | |
| ATAGTTTATTGCTGTGGTTT+AGG | + | chr8.3:57331192-57331211 | MS.gene88427:intron | 30.0% | |
| GAGTTTATAGTTTATTGCTG+TGG | + | chr8.3:57331186-57331205 | MS.gene88427:intron | 30.0% | |
| GCTAATCTAAACATGCATTA+AGG | - | chr8.3:57331529-57331548 | None:intergenic | 30.0% | |
| GTAAGTGAAATAACCACAAA+AGG | - | chr8.3:57331076-57331095 | None:intergenic | 30.0% | |
| GTCAGTGAAATAATCACAAA+AGG | - | chr8.3:57331753-57331772 | None:intergenic | 30.0% | |
| TAATACCAATCAGGATCATA+GGG | - | chr8.3:57332252-57332271 | None:intergenic | 30.0% | |
| TAGATATGCAACTTATATGC+AGG | - | chr8.3:57331500-57331519 | None:intergenic | 30.0% | |
| TATCATAAAACTTATGCCAG+TGG | - | chr8.3:57331385-57331404 | None:intergenic | 30.0% | |
| TTCTTAGATGTGAAGATTTC+TGG | + | chr8.3:57331297-57331316 | MS.gene88427:intron | 30.0% | |
| ! | AAAATACAGGCAGTTTTTGA+AGG | + | chr8.3:57331028-57331047 | MS.gene88427:intron | 30.0% |
| ! | ATGTTTGTCCACATGATTTT+GGG | + | chr8.3:57331853-57331872 | MS.gene88427:intron | 30.0% |
| ! | CCATTGATTATCGAAAATAC+AGG | + | chr8.3:57331015-57331034 | MS.gene88427:intron | 30.0% |
| ! | CCTGTATTTTCGATAATCAA+TGG | - | chr8.3:57331018-57331037 | None:intergenic | 30.0% |
| ! | TATGTTTGTCCACATGATTT+TGG | + | chr8.3:57331852-57331871 | MS.gene88427:intron | 30.0% |
| !! | ACAGTTTGATGCTTGTTTTT+GGG | + | chr8.3:57331771-57331790 | MS.gene88427:intron | 30.0% |
| !! | TTGTTGCTTAGGATTTGTTA+TGG | + | chr8.3:57330820-57330839 | MS.gene88427:intron | 30.0% |
| !! | TTTAGATTAGCTTGTAGTCA+AGG | + | chr8.3:57331538-57331557 | MS.gene88427:intron | 30.0% |
| AACCAAAAGGGTCATGAAAA+AGG | - | chr8.3:57331158-57331177 | None:intergenic | 35.0% | |
| ACCAAAAGGGTCATGAAAAA+GGG | - | chr8.3:57331157-57331176 | None:intergenic | 35.0% | |
| CATTCCAAAGGATTTATGGT+GGG | + | chr8.3:57332453-57332472 | MS.gene88427:CDS | 35.0% | |
| GATTGGTATTATGTTAGAGC+TGG | + | chr8.3:57332261-57332280 | MS.gene88427:CDS | 35.0% | |
| GCTCTAACATAATACCAATC+AGG | - | chr8.3:57332261-57332280 | None:intergenic | 35.0% | |
| GGTTCATTCCAAAGGATTTA+TGG | + | chr8.3:57332449-57332468 | MS.gene88427:CDS | 35.0% | |
| GTGAAGATAACTACTGTTGT+AGG | + | chr8.3:57330872-57330891 | MS.gene88427:intron | 35.0% | |
| GTTACACCATCAATTAGTGT+TGG | + | chr8.3:57330847-57330866 | MS.gene88427:intron | 35.0% | |
| GTTGATTGAAGAGTCCAAAT+GGG | + | chr8.3:57332034-57332053 | MS.gene88427:intron | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr8.3:57331356-57331375 | None:intergenic | 35.0% | |
| TCACATCCAACACTAATTGA+TGG | - | chr8.3:57330856-57330875 | None:intergenic | 35.0% | |
| TCATGTGGACAAACATAGTT+TGG | - | chr8.3:57331849-57331868 | None:intergenic | 35.0% | |
| TCATTCCAAAGGATTTATGG+TGG | + | chr8.3:57332452-57332471 | MS.gene88427:CDS | 35.0% | |
| TCGATAATCAATGGCATGTT+TGG | - | chr8.3:57331009-57331028 | None:intergenic | 35.0% | |
| TTGATTGAAGAGTCCAAATG+GGG | + | chr8.3:57332035-57332054 | MS.gene88427:intron | 35.0% | |
| TTGTAGGCTTAATGCATGTT+TGG | + | chr8.3:57330888-57330907 | MS.gene88427:intron | 35.0% | |
| ! | GCTTATTTGAGTTTATCCAC+TGG | + | chr8.3:57331366-57331385 | MS.gene88427:intron | 35.0% |
| ! | GCTTTTCAAAATCCATAGCA+CGG | - | chr8.3:57331894-57331913 | None:intergenic | 35.0% |
| ! | TGTTGATTGAAGAGTCCAAA+TGG | + | chr8.3:57332033-57332052 | MS.gene88427:intron | 35.0% |
| !! | GACAGTTTGATGCTTGTTTT+TGG | + | chr8.3:57331770-57331789 | MS.gene88427:intron | 35.0% |
| !! | TCCACATGATTTTGGGAATT+GGG | + | chr8.3:57331860-57331879 | MS.gene88427:intron | 35.0% |
| !!! | TTTTGAAGGTGTTGAGTACT+AGG | + | chr8.3:57331042-57331061 | MS.gene88427:intron | 35.0% |
| ACCCAATTCCCAAAATCATG+TGG | - | chr8.3:57331864-57331883 | None:intergenic | 40.0% | |
| AGGAAGATCTACATAAGAGG+TGG | + | chr8.3:57332416-57332435 | MS.gene88427:CDS | 40.0% | |
| ATCTACATAAGAGGTGGTCT+TGG | + | chr8.3:57332422-57332441 | MS.gene88427:CDS | 40.0% | |
| CAAATAAGGGACAACCAATG+CGG | - | chr8.3:57332091-57332110 | None:intergenic | 40.0% | |
| GCAAGGAAGATCTACATAAG+AGG | + | chr8.3:57332413-57332432 | MS.gene88427:CDS | 40.0% | |
| GTACTCAATTTCAGCTTCCA+TGG | + | chr8.3:57332391-57332410 | MS.gene88427:intron | 40.0% | |
| TAAGCCTTGACAAATTCGTG+AGG | - | chr8.3:57330591-57330610 | None:intergenic | 40.0% | |
| TATGTAGATCTTCCTTGCCA+TGG | - | chr8.3:57332411-57332430 | None:intergenic | 40.0% | |
| TCATCGAGATGGATACCAAA+GGG | + | chr8.3:57332567-57332586 | MS.gene88427:CDS | 40.0% | |
| TCGTCACATTCTTCAACAGT+TGG | + | chr8.3:57332532-57332551 | MS.gene88427:CDS | 40.0% | |
| TGCTCTTGCAAAAATGTGGA+GGG | - | chr8.3:57332499-57332518 | None:intergenic | 40.0% | |
| TTCACCTCACGAATTTGTCA+AGG | + | chr8.3:57330584-57330603 | MS.gene88427:CDS | 40.0% | |
| TTTGCGCTCGAAATCTGATA+AGG | - | chr8.3:57331948-57331967 | None:intergenic | 40.0% | |
| ! | CTAGGCAATAATGCCTTTTG+TGG | + | chr8.3:57331060-57331079 | MS.gene88427:intron | 40.0% |
| ! | TCTTGGTATTTTGTTGCTGC+TGG | + | chr8.3:57332344-57332363 | MS.gene88427:intron | 40.0% |
| ! | TTATAGGTTTAGGGCCTGTT+TGG | + | chr8.3:57331339-57331358 | MS.gene88427:intron | 40.0% |
| !! | ACCCTTTTTCATGACCCTTT+TGG | + | chr8.3:57331153-57331172 | MS.gene88427:intron | 40.0% |
| !! | CATGATTTTGGGAATTGGGT+TGG | + | chr8.3:57331864-57331883 | MS.gene88427:intron | 40.0% |
| !! | GTCCACATGATTTTGGGAAT+TGG | + | chr8.3:57331859-57331878 | MS.gene88427:intron | 40.0% |
| !! | TTGGTGTTGGTTCATTCCAA+AGG | + | chr8.3:57332441-57332460 | MS.gene88427:CDS | 40.0% |
| ATACCTTGCCAGATCGTTTG+AGG | - | chr8.3:57330623-57330642 | None:intergenic | 45.0% | |
| CAATTTCAGCTTCCATGGCA+AGG | + | chr8.3:57332396-57332415 | MS.gene88427:intron | 45.0% | |
| CCACTGCTCTTGCAAAAATG+TGG | - | chr8.3:57332503-57332522 | None:intergenic | 45.0% | |
| CTCATCGAGATGGATACCAA+AGG | + | chr8.3:57332566-57332585 | MS.gene88427:CDS | 45.0% | |
| CTGCTCTTGCAAAAATGTGG+AGG | - | chr8.3:57332500-57332519 | None:intergenic | 45.0% | |
| CTTTGGTATCCATCTCGATG+AGG | - | chr8.3:57332568-57332587 | None:intergenic | 45.0% | |
| GAACATGAACCTCATCGAGA+TGG | + | chr8.3:57332556-57332575 | MS.gene88427:CDS | 45.0% | |
| GGCTTCTTCAAAGACTGTGA+AGG | + | chr8.3:57330557-57330576 | MS.gene88427:CDS | 45.0% | |
| TTGACAAGATCAGTCCACTC+AGG | - | chr8.3:57332204-57332223 | None:intergenic | 45.0% | |
| ! | ATAAGAGGTGGTCTTGGTGT+TGG | + | chr8.3:57332428-57332447 | MS.gene88427:CDS | 45.0% |
| ! | CCACATTTTTGCAAGAGCAG+TGG | + | chr8.3:57332500-57332519 | MS.gene88427:CDS | 45.0% |
| !! | CGCATTGGTTGTCCCTTATT+TGG | + | chr8.3:57332089-57332108 | MS.gene88427:intron | 45.0% |
| AATAGTTGGAGCTGCCTGAG+TGG | + | chr8.3:57332187-57332206 | MS.gene88427:intron | 50.0% | |
| AATGCGGAATGCGTGCAATG+TGG | - | chr8.3:57332075-57332094 | None:intergenic | 50.0% | |
| ACATTGCACGCATTCCGCAT+TGG | + | chr8.3:57332074-57332093 | MS.gene88427:intron | 50.0% | |
| GGCTCCCACCATAAATCCTT+TGG | - | chr8.3:57332460-57332479 | None:intergenic | 50.0% | |
| TCACCTCAAACGATCTGGCA+AGG | + | chr8.3:57330617-57330636 | MS.gene88427:CDS | 50.0% | |
| TCAGCTCACCTCAAACGATC+TGG | + | chr8.3:57330612-57330631 | MS.gene88427:CDS | 50.0% | |
| TGGCTCCCTATGATCCTGAT+TGG | + | chr8.3:57332244-57332263 | MS.gene88427:CDS | 50.0% | |
| ! | GGTTTAGGGCCTGTTTGGAT+TGG | + | chr8.3:57331344-57331363 | MS.gene88427:intron | 50.0% |
| !!! | TGGGTTGGTTTTCCGTGCTA+TGG | + | chr8.3:57331879-57331898 | MS.gene88427:intron | 50.0% |
| TGCAAGCAGCAAGCCCCATT+TGG | - | chr8.3:57332051-57332070 | None:intergenic | 55.0% | |
| ! | GGATTTATGGTGGGAGCCAG+AGG | + | chr8.3:57332462-57332481 | MS.gene88427:CDS | 55.0% |
| ! | TATGGTGGGAGCCAGAGGAA+TGG | + | chr8.3:57332467-57332486 | MS.gene88427:CDS | 55.0% |
| GAGGGCGACTTCCATTCCTC+TGG | - | chr8.3:57332481-57332500 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 57330555 | 57332592 | 57330555 | ID=MS.gene88427 |
| chr8.3 | mRNA | 57330555 | 57332592 | 57330555 | ID=MS.gene88427.t1;Parent=MS.gene88427 |
| chr8.3 | exon | 57330555 | 57330638 | 57330555 | ID=MS.gene88427.t1.exon1;Parent=MS.gene88427.t1 |
| chr8.3 | CDS | 57330555 | 57330638 | 57330555 | ID=cds.MS.gene88427.t1;Parent=MS.gene88427.t1 |
| chr8.3 | exon | 57332192 | 57332282 | 57332192 | ID=MS.gene88427.t1.exon2;Parent=MS.gene88427.t1 |
| chr8.3 | CDS | 57332192 | 57332282 | 57332192 | ID=cds.MS.gene88427.t1;Parent=MS.gene88427.t1 |
| chr8.3 | exon | 57332405 | 57332592 | 57332405 | ID=MS.gene88427.t1.exon3;Parent=MS.gene88427.t1 |
| chr8.3 | CDS | 57332405 | 57332592 | 57332405 | ID=cds.MS.gene88427.t1;Parent=MS.gene88427.t1 |
| Gene Sequence |
| Protein sequence |
