Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89648.t1 | XP_003629335.2 | 97.7 | 344 | 8 | 0 | 1 | 344 | 1 | 344 | 4.50E-89 | 338.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89648.t1 | G7LCY0 | 97.7 | 344 | 8 | 0 | 1 | 344 | 1 | 344 | 3.2e-89 | 338.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene89648 | 0.803169 | 3.96E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene89648 | 0.800326 | 1.52E-48 | -1.69E-46 |
| MS.gene049580 | MS.gene89648 | 0.812202 | 4.77E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene89648 | 0.808265 | 3.37E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene89648 | 0.807161 | 5.79E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene89648 | 0.801257 | 9.81E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene89648 | 0.804533 | 2.06E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene89648 | 0.818076 | 2.37E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene89648 | 0.834612 | 2.71E-56 | -1.69E-46 |
| MS.gene050807 | MS.gene89648 | 0.806972 | 6.34E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene89648 | 0.852034 | 6.02E-61 | -1.69E-46 |
| MS.gene050945 | MS.gene89648 | 0.819861 | 9.30E-53 | -1.69E-46 |
| MS.gene050955 | MS.gene89648 | 0.803009 | 4.28E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene89648 | 0.817954 | 2.52E-52 | -1.69E-46 |
| MS.gene051043 | MS.gene89648 | 0.81064 | 1.04E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene89648 | 0.803893 | 2.80E-49 | -1.69E-46 |
| MS.gene051233 | MS.gene89648 | 0.827701 | 1.35E-54 | -1.69E-46 |
| MS.gene051234 | MS.gene89648 | 0.824511 | 7.76E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene89648 | 0.854553 | 1.14E-61 | -1.69E-46 |
| MS.gene051676 | MS.gene89648 | 0.827856 | 1.24E-54 | -1.69E-46 |
| MS.gene051700 | MS.gene89648 | 0.809111 | 2.22E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene89648 | 0.808631 | 2.82E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene89648 | 0.808254 | 3.39E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene89648 | 0.817534 | 3.14E-52 | -1.69E-46 |
| MS.gene051902 | MS.gene89648 | 0.832359 | 9.89E-56 | -1.69E-46 |
| MS.gene051975 | MS.gene89648 | 0.817749 | 2.81E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene89648 | 0.856725 | 2.65E-62 | -1.69E-46 |
| MS.gene052133 | MS.gene89648 | 0.825901 | 3.64E-54 | -1.69E-46 |
| MS.gene052296 | MS.gene89648 | 0.811538 | 6.66E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene89648 | 0.802638 | 5.10E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene89648 | 0.838342 | 3.04E-57 | -1.69E-46 |
| MS.gene052342 | MS.gene89648 | 0.802432 | 5.63E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene89648 | 0.843007 | 1.83E-58 | -1.69E-46 |
| MS.gene053058 | MS.gene89648 | 0.829708 | 4.42E-55 | -1.69E-46 |
| MS.gene053564 | MS.gene89648 | 0.827159 | 1.83E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene89648 | 0.833374 | 5.53E-56 | -1.69E-46 |
| MS.gene053590 | MS.gene89648 | 0.801812 | 7.55E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene89648 | 0.81249 | 4.13E-51 | -1.69E-46 |
| MS.gene054250 | MS.gene89648 | 0.803421 | 3.51E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene89648 | 0.833778 | 4.39E-56 | -1.69E-46 |
| MS.gene05469 | MS.gene89648 | 0.803251 | 3.81E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene89648 | -0.802294 | 6.01E-49 | -1.69E-46 |
| MS.gene056075 | MS.gene89648 | 0.804257 | 2.36E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene89648 | 0.818277 | 2.13E-52 | -1.69E-46 |
| MS.gene056580 | MS.gene89648 | 0.807708 | 4.43E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene89648 | 0.80348 | 3.42E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene89648 | 0.807259 | 5.52E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene89648 | 0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene057694 | MS.gene89648 | 0.810021 | 1.42E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene89648 | 0.84862 | 5.46E-60 | -1.69E-46 |
| MS.gene058054 | MS.gene89648 | 0.823695 | 1.21E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene89648 | 0.815084 | 1.11E-51 | -1.69E-46 |
| MS.gene058074 | MS.gene89648 | 0.830453 | 2.91E-55 | -1.69E-46 |
| MS.gene058638 | MS.gene89648 | 0.811773 | 5.92E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene89648 | 0.820668 | 6.07E-53 | -1.69E-46 |
| MS.gene058852 | MS.gene89648 | 0.851693 | 7.51E-61 | -1.69E-46 |
| MS.gene059146 | MS.gene89648 | 0.823096 | 1.66E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene89648 | 0.854478 | 1.20E-61 | -1.69E-46 |
| MS.gene059227 | MS.gene89648 | 0.809993 | 1.44E-50 | -1.69E-46 |
| MS.gene05978 | MS.gene89648 | 0.82569 | 4.09E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene89648 | 0.824638 | 7.24E-54 | -1.69E-46 |
| MS.gene060465 | MS.gene89648 | 0.803757 | 2.99E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene89648 | 0.829198 | 5.89E-55 | -1.69E-46 |
| MS.gene061006 | MS.gene89648 | 0.822374 | 2.45E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene89648 | 0.805469 | 1.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89648.t1 | MTR_8g076020 | 98.256 | 344 | 6 | 0 | 1 | 344 | 1 | 344 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89648.t1 | AT2G17990 | 57.714 | 350 | 130 | 5 | 1 | 344 | 1 | 338 | 1.84e-129 | 374 |
| MS.gene89648.t1 | AT2G17990 | 57.714 | 350 | 130 | 5 | 1 | 344 | 11 | 348 | 2.86e-129 | 374 |
| MS.gene89648.t1 | AT5G66250 | 52.616 | 344 | 121 | 4 | 1 | 341 | 1 | 305 | 2.81e-105 | 311 |
| MS.gene89648.t1 | AT5G66250 | 52.616 | 344 | 121 | 4 | 1 | 341 | 1 | 305 | 2.81e-105 | 311 |
| MS.gene89648.t1 | AT5G66250 | 52.616 | 344 | 121 | 4 | 1 | 341 | 1 | 305 | 2.81e-105 | 311 |
| MS.gene89648.t1 | AT5G66250 | 49.725 | 364 | 121 | 5 | 1 | 341 | 1 | 325 | 3.07e-100 | 299 |
| MS.gene89648.t1 | AT2G17990 | 51.864 | 295 | 124 | 5 | 1 | 289 | 1 | 283 | 1.46e-92 | 279 |
| MS.gene89648.t1 | AT4G36105 | 42.574 | 303 | 103 | 6 | 44 | 344 | 12 | 245 | 1.70e-58 | 189 |
| MS.gene89648.t1 | AT4G36105 | 42.484 | 306 | 105 | 6 | 44 | 344 | 12 | 251 | 5.24e-58 | 188 |
Find 56 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACAGCTTCTCAATAGTT+TGG | 0.270471 | 8.3:+27835667 | None:intergenic |
| AGAGCTTAGTCGAGTGAAAC+AGG | 0.376727 | 8.3:-27835766 | MS.gene89648:CDS |
| TTCAGAGGAAGACTCGAAAA+AGG | 0.376874 | 8.3:-27836351 | MS.gene89648:CDS |
| GCAATACATCTACTTGAGAT+TGG | 0.380445 | 8.3:+27836411 | None:intergenic |
| CAAAGAAGGGGTCCCGTTAT+CGG | 0.388084 | 8.3:-27836186 | MS.gene89648:CDS |
| GCAAAGAGTTGCGGATTTGA+TGG | 0.395456 | 8.3:-27835832 | MS.gene89648:CDS |
| GGCTGAAGTTCAGAAACTTA+TGG | 0.400188 | 8.3:-27834099 | MS.gene89648:CDS |
| GAACATGTCTATGAAATTAG+AGG | 0.405432 | 8.3:-27835904 | MS.gene89648:CDS |
| TCAAGGTTTGTTAGACGAAC+AGG | 0.411492 | 8.3:-27836090 | MS.gene89648:CDS |
| TGAGATCAAGGCGAGTATAC+AGG | 0.423974 | 8.3:-27836375 | MS.gene89648:CDS |
| TCCCGTTATCGGATTGGTCT+AGG | 0.436387 | 8.3:-27836175 | MS.gene89648:CDS |
| GTCGGGTTTGAAGTCTCTGT+CGG | 0.438018 | 8.3:-27836474 | MS.gene89648:CDS |
| CAAGAAAGAAGCTCAACTTC+TGG | 0.441607 | 8.3:-27834045 | MS.gene89648:CDS |
| TCCTAGACCAATCCGATAAC+GGG | 0.442238 | 8.3:+27836174 | None:intergenic |
| AGTTGGAAAGACTACTCAAT+TGG | 0.449839 | 8.3:-27834144 | MS.gene89648:CDS |
| GGTGAAGATATTGCATTGTC+GGG | 0.454119 | 8.3:-27836491 | MS.gene89648:CDS |
| ATCGGAAACTGCTGTTGAAA+AGG | 0.457385 | 8.3:-27835979 | MS.gene89648:CDS |
| GAACAGGACGCTGTTTATAT+AGG | 0.461877 | 8.3:-27836074 | MS.gene89648:CDS |
| TCTTGGGAGCACAGGCTAGT+TGG | 0.465821 | 8.3:-27834161 | MS.gene89648:intron |
| GTCTATGAAATTAGAGGAGA+TGG | 0.468338 | 8.3:-27835898 | MS.gene89648:CDS |
| AGGTGAAGATATTGCATTGT+CGG | 0.470050 | 8.3:-27836492 | MS.gene89648:CDS |
| AGTAGATGTATTGCAAGAAA+AGG | 0.481789 | 8.3:-27836402 | MS.gene89648:CDS |
| GTAGGGCTTGTTGACAAAGA+AGG | 0.487158 | 8.3:-27836200 | MS.gene89648:CDS |
| TTCCTAGACCAATCCGATAA+CGG | 0.504695 | 8.3:+27836173 | None:intergenic |
| TAGGGCTTGTTGACAAAGAA+GGG | 0.509230 | 8.3:-27836199 | MS.gene89648:CDS |
| TGATGGAAGCTCTTGTGAAA+AGG | 0.517318 | 8.3:-27836016 | MS.gene89648:CDS |
| CATTTAGCGCAGACGTCGTG+TGG | 0.519200 | 8.3:-27836242 | MS.gene89648:CDS |
| GATGGAAGCTCTTGTGAAAA+GGG | 0.523267 | 8.3:-27836015 | MS.gene89648:CDS |
| AGAAAAGGTTAATGAGATCA+AGG | 0.523536 | 8.3:-27836387 | MS.gene89648:CDS |
| TCTTGTGATACGTGGAAGGA+AGG | 0.528893 | 8.3:-27836446 | MS.gene89648:CDS |
| CACGACGTCTGCGCTAAATG+AGG | 0.531569 | 8.3:+27836245 | None:intergenic |
| AAGGGGTCCCGTTATCGGAT+TGG | 0.533469 | 8.3:-27836181 | MS.gene89648:CDS |
| TCGGGTTTGAAGTCTCTGTC+GGG | 0.538898 | 8.3:-27836473 | MS.gene89648:CDS |
| TGGAAAGACTACTCAATTGG+AGG | 0.542813 | 8.3:-27834141 | MS.gene89648:CDS |
| CGATATGCGGCAAAGAGTTG+CGG | 0.550984 | 8.3:-27835841 | MS.gene89648:CDS |
| AAAGTCGAAAGCTAGAATCA+TGG | 0.560818 | 8.3:-27836273 | MS.gene89648:CDS |
| GGCGAGTATACAGGGTTCAG+AGG | 0.561421 | 8.3:-27836366 | MS.gene89648:CDS |
| ATTATACAGAAAATGGCGGC+AGG | 0.562959 | 8.3:-27836512 | None:intergenic |
| GAATGAACAATGTAAGATGA+TGG | 0.563082 | 8.3:-27834018 | MS.gene89648:CDS |
| GAGATCAAGGCGAGTATACA+GGG | 0.570374 | 8.3:-27836374 | MS.gene89648:CDS |
| GATACTAAACTCTGTTCAGA+TGG | 0.582408 | 8.3:-27836048 | MS.gene89648:CDS |
| GGGTGAGAAAATGCAGAAAG+AGG | 0.582753 | 8.3:-27834120 | MS.gene89648:CDS |
| CGGGTCAATCTTGTGATACG+TGG | 0.587588 | 8.3:-27836454 | MS.gene89648:CDS |
| CTTGTGATACGTGGAAGGAA+GGG | 0.592666 | 8.3:-27836445 | MS.gene89648:CDS |
| CTATTGAGAAGCTGTTTGAA+CGG | 0.594283 | 8.3:-27835662 | MS.gene89648:intron |
| ATAGGAATTAGCCGTCATCA+AGG | 0.599347 | 8.3:-27836107 | MS.gene89648:CDS |
| TGATACGTGGAAGGAAGGGA+TGG | 0.601080 | 8.3:-27836441 | MS.gene89648:CDS |
| TCAGATGGTCACTGATGTGA+TGG | 0.602734 | 8.3:-27836033 | MS.gene89648:CDS |
| GAAGATGCAGAATCGTGGAT+AGG | 0.605981 | 8.3:-27836125 | MS.gene89648:CDS |
| TCAATCTTGTGATACGTGGA+AGG | 0.612583 | 8.3:-27836450 | MS.gene89648:CDS |
| CGTCTAACAAACCTTGATGA+CGG | 0.621672 | 8.3:+27836096 | None:intergenic |
| GGAAAGACTACTCAATTGGA+GGG | 0.626700 | 8.3:-27834140 | MS.gene89648:CDS |
| ATGACGAAGATGCAGAATCG+TGG | 0.632880 | 8.3:-27836130 | MS.gene89648:CDS |
| TAGTAGTCTAATCACAGTGA+GGG | 0.635665 | 8.3:-27835718 | MS.gene89648:CDS |
| AGGGCTTGTTGACAAAGAAG+GGG | 0.701081 | 8.3:-27836198 | MS.gene89648:CDS |
| TTAGTAGTCTAATCACAGTG+AGG | 0.744586 | 8.3:-27835719 | MS.gene89648:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCTATAAAATTATCT+GGG | + | chr8.3:27835592-27835611 | None:intergenic | 10.0% |
| !!! | AGATAATTTTATAGAAAATT+GGG | - | chr8.3:27835592-27835611 | MS.gene89648:intron | 10.0% |
| !! | AAAATTAAACTTCAGAATTA+AGG | + | chr8.3:27835091-27835110 | None:intergenic | 15.0% |
| !! | CACAAAACAAATAATTTATT+AGG | + | chr8.3:27835263-27835282 | None:intergenic | 15.0% |
| !!! | AAGTTTAATTTTCTTCATTA+TGG | - | chr8.3:27835099-27835118 | MS.gene89648:intron | 15.0% |
| !!! | CAATTTTCTATAAAATTATC+TGG | + | chr8.3:27835593-27835612 | None:intergenic | 15.0% |
| !!! | CAGATAATTTTATAGAAAAT+TGG | - | chr8.3:27835591-27835610 | MS.gene89648:intron | 15.0% |
| !!! | TTTTAAATTACACGTTAATT+TGG | - | chr8.3:27835427-27835446 | MS.gene89648:intron | 15.0% |
| !! | AAAATAAAAATCATGCAGTA+AGG | + | chr8.3:27836315-27836334 | None:intergenic | 20.0% |
| !! | ACATAAGCAATTATATGATA+GGG | - | chr8.3:27836002-27836021 | MS.gene89648:CDS | 20.0% |
| !! | ACATCCTTTGATTAATTTAA+GGG | - | chr8.3:27835144-27835163 | MS.gene89648:intron | 20.0% |
| !! | TACATAAGCAATTATATGAT+AGG | - | chr8.3:27836001-27836020 | MS.gene89648:CDS | 20.0% |
| !! | TACATCCTTTGATTAATTTA+AGG | - | chr8.3:27835143-27835162 | MS.gene89648:intron | 20.0% |
| !! | TATAGAAAATTGGGTATTAT+GGG | - | chr8.3:27835601-27835620 | MS.gene89648:intron | 20.0% |
| !! | TTAAAAGTTAACTATCAAAG+AGG | + | chr8.3:27836094-27836113 | None:intergenic | 20.0% |
| !! | TTATAGAAAATTGGGTATTA+TGG | - | chr8.3:27835600-27835619 | MS.gene89648:intron | 20.0% |
| !!! | CTTTGATAGTTAACTTTTAA+GGG | - | chr8.3:27836094-27836113 | MS.gene89648:CDS | 20.0% |
| !!! | TCATTTTTAAAGCCATAATT+TGG | - | chr8.3:27835471-27835490 | MS.gene89648:intron | 20.0% |
| !!! | TCTTTGATAGTTAACTTTTA+AGG | - | chr8.3:27836093-27836112 | MS.gene89648:CDS | 20.0% |
| !!! | TGCATGATTTTTATTTTCTT+GGG | - | chr8.3:27836318-27836337 | MS.gene89648:CDS | 20.0% |
| ! | AAATAGGATCTTAAGTGATT+TGG | - | chr8.3:27836063-27836082 | MS.gene89648:CDS | 25.0% |
| ! | AAATCACTTAAGATCCTATT+TGG | + | chr8.3:27836064-27836083 | None:intergenic | 25.0% |
| ! | ATTAGGATGATCTATGTTAT+TGG | + | chr8.3:27835246-27835265 | None:intergenic | 25.0% |
| ! | CATAAGCAATTATATGATAG+GGG | - | chr8.3:27836003-27836022 | MS.gene89648:CDS | 25.0% |
| ! | CATTCCCTTAAATTAATCAA+AGG | + | chr8.3:27835151-27835170 | None:intergenic | 25.0% |
| ! | CTATAAAATTATCTGGGAAA+AGG | + | chr8.3:27835586-27835605 | None:intergenic | 25.0% |
| ! | CTTTAACAAAAGATAAAACG+AGG | + | chr8.3:27835805-27835824 | None:intergenic | 25.0% |
| !! | AGGTCAAATTGTTTTCATAT+AGG | + | chr8.3:27835785-27835804 | None:intergenic | 25.0% |
| !! | ATATAGGAGTATAATTACGA+TGG | + | chr8.3:27836144-27836163 | None:intergenic | 25.0% |
| !! | CTTATCTATCCAATTTGTTT+AGG | - | chr8.3:27835205-27835224 | MS.gene89648:intron | 25.0% |
| !! | TATAGGAGTATAATTACGAT+GGG | + | chr8.3:27836143-27836162 | None:intergenic | 25.0% |
| !!! | ATAGTATTTTGAACGATATG+CGG | - | chr8.3:27834641-27834660 | MS.gene89648:intron | 25.0% |
| !!! | ATTAAGTTGTTTCTCCAAAT+AGG | - | chr8.3:27836047-27836066 | MS.gene89648:CDS | 25.0% |
| !!! | CTGCATGATTTTTATTTTCT+TGG | - | chr8.3:27836317-27836336 | MS.gene89648:CDS | 25.0% |
| !!! | CTTATTTTTATGAGCTTTCT+AGG | - | chr8.3:27835732-27835751 | MS.gene89648:CDS | 25.0% |
| !!! | TTATGAGTTTTCTTGATGAT+AGG | - | chr8.3:27834995-27835014 | MS.gene89648:intron | 25.0% |
| !!! | TTTCCTATGTTTTTTGCTTT+GGG | - | chr8.3:27835338-27835357 | MS.gene89648:intron | 25.0% |
| !!! | TTTTAAAGCCATAATTTGGA+TGG | - | chr8.3:27835475-27835494 | MS.gene89648:intron | 25.0% |
| !!! | TTTTTTATCATCGTAAAAGC+TGG | - | chr8.3:27835518-27835537 | MS.gene89648:intron | 25.0% |
| ACAATAGCAAGTGAAAAGTA+TGG | - | chr8.3:27835402-27835421 | MS.gene89648:intron | 30.0% | |
| AGAAAAGGTTAATGAGATCA+AGG | - | chr8.3:27834108-27834127 | MS.gene89648:CDS | 30.0% | |
| AGAAACCAACCTAAACAAAT+TGG | + | chr8.3:27835217-27835236 | None:intergenic | 30.0% | |
| AGTAGATGTATTGCAAGAAA+AGG | - | chr8.3:27834093-27834112 | MS.gene89648:CDS | 30.0% | |
| ATAAGCTTATGAACCCATTT+GGG | - | chr8.3:27835851-27835870 | MS.gene89648:CDS | 30.0% | |
| ATACCCAAAGCAAAAAACAT+AGG | + | chr8.3:27835344-27835363 | None:intergenic | 30.0% | |
| CCTATATCATTGTGTTTGTT+GGG | - | chr8.3:27836157-27836176 | MS.gene89648:CDS | 30.0% | |
| GAAAAGGAAAAAGTGAGTTT+AGG | - | chr8.3:27834532-27834551 | MS.gene89648:intron | 30.0% | |
| GAACATGTCTATGAAATTAG+AGG | - | chr8.3:27834591-27834610 | MS.gene89648:intron | 30.0% | |
| GAATGAACAATGTAAGATGA+TGG | - | chr8.3:27836477-27836496 | MS.gene89648:CDS | 30.0% | |
| TATAAGCTTATGAACCCATT+TGG | - | chr8.3:27835850-27835869 | MS.gene89648:CDS | 30.0% | |
| TATTAAGAGACTGTTTGAGA+GGG | - | chr8.3:27835667-27835686 | MS.gene89648:CDS | 30.0% | |
| TCCTATATCATTGTGTTTGT+TGG | - | chr8.3:27836156-27836175 | MS.gene89648:CDS | 30.0% | |
| TTTCAAAGCCATCCAAATTA+TGG | + | chr8.3:27835486-27835505 | None:intergenic | 30.0% | |
| ! | AAAAGGAATTAGAGGTTTTG+TGG | - | chr8.3:27834161-27834180 | MS.gene89648:intron | 30.0% |
| ! | AAATGGGTTCATAAGCTTAT+AGG | + | chr8.3:27835851-27835870 | None:intergenic | 30.0% |
| ! | TCTATCCAATTTGTTTAGGT+TGG | - | chr8.3:27835209-27835228 | MS.gene89648:intron | 30.0% |
| !! | GATAGTTAACTTTTAAGGGA+GGG | - | chr8.3:27836098-27836117 | MS.gene89648:CDS | 30.0% |
| !! | TCTTGTGAAAAGGGTTTTAT+TGG | - | chr8.3:27834489-27834508 | MS.gene89648:intron | 30.0% |
| !! | TGATAGTTAACTTTTAAGGG+AGG | - | chr8.3:27836097-27836116 | MS.gene89648:CDS | 30.0% |
| !!! | CTTTCCTATGTTTTTTGCTT+TGG | - | chr8.3:27835337-27835356 | MS.gene89648:intron | 30.0% |
| AAAGTCGAAAGCTAGAATCA+TGG | - | chr8.3:27834222-27834241 | MS.gene89648:intron | 35.0% | |
| AATTGCAGTGTTCACATAGA+AGG | - | chr8.3:27836257-27836276 | MS.gene89648:CDS | 35.0% | |
| AGACTCGAAAAAGGAATTAG+AGG | - | chr8.3:27834153-27834172 | MS.gene89648:intron | 35.0% | |
| AGGTGAAGATATTGCATTGT+CGG | - | chr8.3:27834003-27834022 | MS.gene89648:CDS | 35.0% | |
| AGTTGGAAAGACTACTCAAT+TGG | - | chr8.3:27836351-27836370 | MS.gene89648:CDS | 35.0% | |
| CAAACAGCTTCTCAATAGTT+TGG | + | chr8.3:27834831-27834850 | None:intergenic | 35.0% | |
| CAAGTGTCTTGACTATTATC+TGG | - | chr8.3:27834887-27834906 | MS.gene89648:intron | 35.0% | |
| CCCAACAAACACAATGATAT+AGG | + | chr8.3:27836160-27836179 | None:intergenic | 35.0% | |
| CTATTGAGAAGCTGTTTGAA+CGG | - | chr8.3:27834833-27834852 | MS.gene89648:intron | 35.0% | |
| GATACTAAACTCTGTTCAGA+TGG | - | chr8.3:27834447-27834466 | MS.gene89648:intron | 35.0% | |
| GCAATACATCTACTTGAGAT+TGG | + | chr8.3:27834087-27834106 | None:intergenic | 35.0% | |
| GTATTAAGAGACTGTTTGAG+AGG | - | chr8.3:27835666-27835685 | MS.gene89648:CDS | 35.0% | |
| GTCTATGAAATTAGAGGAGA+TGG | - | chr8.3:27834597-27834616 | MS.gene89648:intron | 35.0% | |
| GTGGAATCAAAAAGTTGGAT+GGG | - | chr8.3:27834272-27834291 | MS.gene89648:intron | 35.0% | |
| TAGTAGTCTAATCACAGTGA+GGG | - | chr8.3:27834777-27834796 | MS.gene89648:intron | 35.0% | |
| TGGAATCAAAAAGTTGGATG+GGG | - | chr8.3:27834273-27834292 | MS.gene89648:intron | 35.0% | |
| TGTGGAATCAAAAAGTTGGA+TGG | - | chr8.3:27834271-27834290 | MS.gene89648:intron | 35.0% | |
| TTAGTAGTCTAATCACAGTG+AGG | - | chr8.3:27834776-27834795 | MS.gene89648:intron | 35.0% | |
| TTCAGAATTAAGGACCTGTT+TGG | + | chr8.3:27835081-27835100 | None:intergenic | 35.0% | |
| TTCGGTTCATATATGCTTAG+TGG | - | chr8.3:27836223-27836242 | MS.gene89648:CDS | 35.0% | |
| !! | AGTTTGGAATTGCTTTTCTG+AGG | + | chr8.3:27834815-27834834 | None:intergenic | 35.0% |
| !! | CTTCATAGAAGTGCTAAGAA+AGG | + | chr8.3:27835178-27835197 | None:intergenic | 35.0% |
| !! | GTGTTTGTTGGGTTTTTCTT+GGG | - | chr8.3:27836168-27836187 | MS.gene89648:CDS | 35.0% |
| !! | TGTGTTTGTTGGGTTTTTCT+TGG | - | chr8.3:27836167-27836186 | MS.gene89648:CDS | 35.0% |
| !!! | ACTTTTCACTTGCTATTGTG+TGG | + | chr8.3:27835401-27835420 | None:intergenic | 35.0% |
| !!! | TGTGAAAAGGGTTTTATTGG+CGG | - | chr8.3:27834492-27834511 | MS.gene89648:intron | 35.0% |
| !!! | TTTTATTTTCTTGGGAGCAC+AGG | - | chr8.3:27836326-27836345 | MS.gene89648:CDS | 35.0% |
| AATTAAGGACCTGTTTGGCA+TGG | + | chr8.3:27835076-27835095 | None:intergenic | 40.0% | |
| ACCAAAAGACATCGTGAACA+TGG | + | chr8.3:27835312-27835331 | None:intergenic | 40.0% | |
| ATAGGAATTAGCCGTCATCA+AGG | - | chr8.3:27834388-27834407 | MS.gene89648:intron | 40.0% | |
| ATCAAAAAGTTGGATGGGGT+AGG | - | chr8.3:27834277-27834296 | MS.gene89648:intron | 40.0% | |
| ATCGGAAACTGCTGTTGAAA+AGG | - | chr8.3:27834516-27834535 | MS.gene89648:intron | 40.0% | |
| CAAGAAAGAAGCTCAACTTC+TGG | - | chr8.3:27836450-27836469 | MS.gene89648:CDS | 40.0% | |
| CGTCTAACAAACCTTGATGA+CGG | + | chr8.3:27834402-27834421 | None:intergenic | 40.0% | |
| GAACAGGACGCTGTTTATAT+AGG | - | chr8.3:27834421-27834440 | MS.gene89648:intron | 40.0% | |
| GAACATGGCAACTTTCAACA+AGG | + | chr8.3:27835297-27835316 | None:intergenic | 40.0% | |
| GACTGTTTGAGAGGGTTTAT+AGG | - | chr8.3:27835675-27835694 | MS.gene89648:CDS | 40.0% | |
| GATGGAAGCTCTTGTGAAAA+GGG | - | chr8.3:27834480-27834499 | MS.gene89648:intron | 40.0% | |
| GGAAAAAGTGAGTTTAGGTC+AGG | - | chr8.3:27834537-27834556 | MS.gene89648:intron | 40.0% | |
| GGAAAGACTACTCAATTGGA+GGG | - | chr8.3:27836355-27836374 | MS.gene89648:CDS | 40.0% | |
| GGCTGAAGTTCAGAAACTTA+TGG | - | chr8.3:27836396-27836415 | MS.gene89648:CDS | 40.0% | |
| GGTGAAGATATTGCATTGTC+GGG | - | chr8.3:27834004-27834023 | MS.gene89648:CDS | 40.0% | |
| GTCGTGTGGAATCAAAAAGT+TGG | - | chr8.3:27834267-27834286 | MS.gene89648:intron | 40.0% | |
| TCAAAAAGTTGGATGGGGTA+GGG | - | chr8.3:27834278-27834297 | MS.gene89648:intron | 40.0% | |
| TCAATCTTGTGATACGTGGA+AGG | - | chr8.3:27834045-27834064 | MS.gene89648:CDS | 40.0% | |
| TGATGGAAGCTCTTGTGAAA+AGG | - | chr8.3:27834479-27834498 | MS.gene89648:intron | 40.0% | |
| TGGAAAGACTACTCAATTGG+AGG | - | chr8.3:27836354-27836373 | MS.gene89648:CDS | 40.0% | |
| TTCAGAGGAAGACTCGAAAA+AGG | - | chr8.3:27834144-27834163 | MS.gene89648:CDS | 40.0% | |
| TTCCTAGACCAATCCGATAA+CGG | + | chr8.3:27834325-27834344 | None:intergenic | 40.0% | |
| ! | TTGTTGGGTTTTTCTTGGGT+GGG | - | chr8.3:27836172-27836191 | MS.gene89648:CDS | 40.0% |
| ! | TTTGTTGGGTTTTTCTTGGG+TGG | - | chr8.3:27836171-27836190 | MS.gene89648:CDS | 40.0% |
| ! | TTTTTCGTTTGACCTAGTCG+TGG | - | chr8.3:27834927-27834946 | MS.gene89648:intron | 40.0% |
| !! | CATAGAAGTGCTAAGAAAGG+AGG | + | chr8.3:27835175-27835194 | None:intergenic | 40.0% |
| !! | GCTGGCTTAGAATATGCTTT+TGG | - | chr8.3:27835536-27835555 | MS.gene89648:intron | 40.0% |
| !! | TAGGGCTTGTTGACAAAGAA+GGG | - | chr8.3:27834296-27834315 | MS.gene89648:intron | 40.0% |
| !! | TCAAGGTTTGTTAGACGAAC+AGG | - | chr8.3:27834405-27834424 | MS.gene89648:intron | 40.0% |
| !!! | AAGGGTTTTATTGGCGGAAT+CGG | - | chr8.3:27834498-27834517 | MS.gene89648:intron | 40.0% |
| ACGATGGGCATCTAAGTACT+TGG | + | chr8.3:27836128-27836147 | None:intergenic | 45.0% | |
| AGAGCTTAGTCGAGTGAAAC+AGG | - | chr8.3:27834729-27834748 | MS.gene89648:intron | 45.0% | |
| AGTTCACAACCATGCCAAAC+AGG | - | chr8.3:27835064-27835083 | MS.gene89648:intron | 45.0% | |
| ATGACGAAGATGCAGAATCG+TGG | - | chr8.3:27834365-27834384 | MS.gene89648:intron | 45.0% | |
| CGATGGGCATCTAAGTACTT+GGG | + | chr8.3:27836127-27836146 | None:intergenic | 45.0% | |
| CTTGTGATACGTGGAAGGAA+GGG | - | chr8.3:27834050-27834069 | MS.gene89648:CDS | 45.0% | |
| GAAACGAACCTAAGACCTTG+AGG | + | chr8.3:27835919-27835938 | None:intergenic | 45.0% | |
| GAAGATGCAGAATCGTGGAT+AGG | - | chr8.3:27834370-27834389 | MS.gene89648:intron | 45.0% | |
| GAGATCAAGGCGAGTATACA+GGG | - | chr8.3:27834121-27834140 | MS.gene89648:CDS | 45.0% | |
| GATGGGCATCTAAGTACTTG+GGG | + | chr8.3:27836126-27836145 | None:intergenic | 45.0% | |
| GCAAAGAGTTGCGGATTTGA+TGG | - | chr8.3:27834663-27834682 | MS.gene89648:intron | 45.0% | |
| GCATCTCATACTACTCGATG+TGG | + | chr8.3:27835638-27835657 | None:intergenic | 45.0% | |
| GCTTATGAACCCATTTGGGT+TGG | - | chr8.3:27835855-27835874 | MS.gene89648:CDS | 45.0% | |
| GGGTGAGAAAATGCAGAAAG+AGG | - | chr8.3:27836375-27836394 | MS.gene89648:CDS | 45.0% | |
| TATTGTGTGGAGAGAGTGAC+AGG | + | chr8.3:27835388-27835407 | None:intergenic | 45.0% | |
| TCAGATGGTCACTGATGTGA+TGG | - | chr8.3:27834462-27834481 | MS.gene89648:intron | 45.0% | |
| TCCTAGACCAATCCGATAAC+GGG | + | chr8.3:27834324-27834343 | None:intergenic | 45.0% | |
| TCTTGTGATACGTGGAAGGA+AGG | - | chr8.3:27834049-27834068 | MS.gene89648:CDS | 45.0% | |
| TGAGATCAAGGCGAGTATAC+AGG | - | chr8.3:27834120-27834139 | MS.gene89648:CDS | 45.0% | |
| TTTCTCCCCGGAGCTAATTT+GGG | - | chr8.3:27835935-27835954 | MS.gene89648:CDS | 45.0% | |
| ! | AGAAGTATACCACCACGACT+AGG | + | chr8.3:27834942-27834961 | None:intergenic | 45.0% |
| ! | GCCATGTTCACGATGTCTTT+TGG | - | chr8.3:27835308-27835327 | MS.gene89648:intron | 45.0% |
| ! | GGTGGGCATGTTTTGTGTTT+CGG | - | chr8.3:27836205-27836224 | MS.gene89648:CDS | 45.0% |
| ! | TGTTGGGTTTTTCTTGGGTG+GGG | - | chr8.3:27836173-27836192 | MS.gene89648:CDS | 45.0% |
| !! | AGGGCTTGTTGACAAAGAAG+GGG | - | chr8.3:27834297-27834316 | MS.gene89648:intron | 45.0% |
| !! | GTAGGGCTTGTTGACAAAGA+AGG | - | chr8.3:27834295-27834314 | MS.gene89648:intron | 45.0% |
| ACGAACCTAAGACCTTGAGG+AGG | + | chr8.3:27835916-27835935 | None:intergenic | 50.0% | |
| ATGCTCCTCCTCAAGGTCTT+AGG | - | chr8.3:27835908-27835927 | MS.gene89648:CDS | 50.0% | |
| CAAAGAAGGGGTCCCGTTAT+CGG | - | chr8.3:27834309-27834328 | MS.gene89648:intron | 50.0% | |
| CGATATGCGGCAAAGAGTTG+CGG | - | chr8.3:27834654-27834673 | MS.gene89648:intron | 50.0% | |
| CGGGTCAATCTTGTGATACG+TGG | - | chr8.3:27834041-27834060 | MS.gene89648:CDS | 50.0% | |
| GGGAAAAGGTAGCCTGAACA+AGG | + | chr8.3:27835572-27835591 | None:intergenic | 50.0% | |
| GTCTTAGGTTCGTTTCTCCC+CGG | - | chr8.3:27835923-27835942 | MS.gene89648:CDS | 50.0% | |
| GTTTCTCCCCGGAGCTAATT+TGG | - | chr8.3:27835934-27835953 | MS.gene89648:CDS | 50.0% | |
| TAGCCCACCCAAATTAGCTC+CGG | + | chr8.3:27835945-27835964 | None:intergenic | 50.0% | |
| TGATACGTGGAAGGAAGGGA+TGG | - | chr8.3:27834054-27834073 | MS.gene89648:CDS | 50.0% | |
| TTCGTTTGACCTAGTCGTGG+TGG | - | chr8.3:27834930-27834949 | MS.gene89648:intron | 50.0% | |
| TTGGAGTATGCTCCTCCTCA+AGG | - | chr8.3:27835901-27835920 | MS.gene89648:CDS | 50.0% | |
| ! | GTCGGGTTTGAAGTCTCTGT+CGG | - | chr8.3:27834021-27834040 | MS.gene89648:CDS | 50.0% |
| ! | GTTTTTCTTGGGTGGGGACT+GGG | - | chr8.3:27836179-27836198 | MS.gene89648:CDS | 50.0% |
| ! | TCGGGTTTGAAGTCTCTGTC+GGG | - | chr8.3:27834022-27834041 | MS.gene89648:CDS | 50.0% |
| ! | TTGAGGAGGAGCATACTCCA+AGG | + | chr8.3:27835902-27835921 | None:intergenic | 50.0% |
| ! | TTTTTCTTGGGTGGGGACTG+GGG | - | chr8.3:27836180-27836199 | MS.gene89648:CDS | 50.0% |
| !! | GAGATGGAGCGTTTTGCTTC+GGG | - | chr8.3:27834613-27834632 | MS.gene89648:intron | 50.0% |
| !! | GGAAGCGTCTATCCTTGTTC+AGG | - | chr8.3:27835557-27835576 | MS.gene89648:intron | 50.0% |
| !! | GGAGATGGAGCGTTTTGCTT+CGG | - | chr8.3:27834612-27834631 | MS.gene89648:intron | 50.0% |
| !! | GTGGTATTGACTTGGGACCT+TGG | - | chr8.3:27835882-27835901 | MS.gene89648:CDS | 50.0% |
| !! | TCCCGTTATCGGATTGGTCT+AGG | - | chr8.3:27834320-27834339 | MS.gene89648:intron | 50.0% |
| !! | TGGCCTGGTGGTATTGACTT+GGG | - | chr8.3:27835875-27835894 | MS.gene89648:CDS | 50.0% |
| !! | TTGGCCTGGTGGTATTGACT+TGG | - | chr8.3:27835874-27835893 | MS.gene89648:CDS | 50.0% |
| AAGGGGTCCCGTTATCGGAT+TGG | - | chr8.3:27834314-27834333 | MS.gene89648:intron | 55.0% | |
| ACCACCAGGCCAACCCAAAT+GGG | + | chr8.3:27835867-27835886 | None:intergenic | 55.0% | |
| AGCCCACCCAAATTAGCTCC+GGG | + | chr8.3:27835944-27835963 | None:intergenic | 55.0% | |
| CACGACGTCTGCGCTAAATG+AGG | + | chr8.3:27834253-27834272 | None:intergenic | 55.0% | |
| CATTTAGCGCAGACGTCGTG+TGG | - | chr8.3:27834253-27834272 | MS.gene89648:intron | 55.0% | |
| GGCGAGTATACAGGGTTCAG+AGG | - | chr8.3:27834129-27834148 | MS.gene89648:CDS | 55.0% | |
| GGTCCCAAGTCAATACCACC+AGG | + | chr8.3:27835881-27835900 | None:intergenic | 55.0% | |
| TACCACCAGGCCAACCCAAA+TGG | + | chr8.3:27835868-27835887 | None:intergenic | 55.0% | |
| TCCCCGGAGCTAATTTGGGT+GGG | - | chr8.3:27835939-27835958 | MS.gene89648:CDS | 55.0% | |
| ! | GGTTTTTCTTGGGTGGGGAC+TGG | - | chr8.3:27836178-27836197 | MS.gene89648:CDS | 55.0% |
| ! | TCTTGGGAGCACAGGCTAGT+TGG | - | chr8.3:27836334-27836353 | MS.gene89648:CDS | 55.0% |
| ! | TTTTCTTGGGTGGGGACTGG+GGG | - | chr8.3:27836181-27836200 | MS.gene89648:CDS | 55.0% |
| !! | TGAACCCATTTGGGTTGGCC+TGG | - | chr8.3:27835860-27835879 | MS.gene89648:CDS | 55.0% |
| CTCCCCGGAGCTAATTTGGG+TGG | - | chr8.3:27835938-27835957 | MS.gene89648:CDS | 60.0% | |
| GCCCACCCAAATTAGCTCCG+GGG | + | chr8.3:27835943-27835962 | None:intergenic | 60.0% | |
| !! | ACCCATTTGGGTTGGCCTGG+TGG | - | chr8.3:27835863-27835882 | MS.gene89648:CDS | 60.0% |
| TCTTGGGTGGGGACTGGGGG+TGG | - | chr8.3:27836184-27836203 | MS.gene89648:CDS | 70.0% | |
| GGGTGGGGACTGGGGGTGGT+GGG | - | chr8.3:27836188-27836207 | MS.gene89648:CDS | 75.0% | |
| TGGGTGGGGACTGGGGGTGG+TGG | - | chr8.3:27836187-27836206 | MS.gene89648:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 27833995 | 27836522 | 27833995 | ID=MS.gene89648 |
| chr8.3 | mRNA | 27833995 | 27836522 | 27833995 | ID=MS.gene89648.t1;Parent=MS.gene89648 |
| chr8.3 | exon | 27835663 | 27836522 | 27835663 | ID=MS.gene89648.t1.exon1;Parent=MS.gene89648.t1 |
| chr8.3 | CDS | 27835663 | 27836522 | 27835663 | ID=cds.MS.gene89648.t1;Parent=MS.gene89648.t1 |
| chr8.3 | exon | 27833995 | 27834169 | 27833995 | ID=MS.gene89648.t1.exon2;Parent=MS.gene89648.t1 |
| chr8.3 | CDS | 27833995 | 27834169 | 27833995 | ID=cds.MS.gene89648.t1;Parent=MS.gene89648.t1 |
| Gene Sequence |
| Protein sequence |
