AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020560.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020560.01.T01 MTR_4g053880 89.689 514 30 6 1 513 1 492 0.0 920
MsG0480020560.01.T01 MTR_2g086070 65.039 512 156 6 3 513 2 491 0.0 687
MsG0480020560.01.T01 MTR_4g053785 62.500 512 169 6 3 513 2 491 0.0 659
MsG0480020560.01.T01 MTR_2g086090 62.891 512 166 8 3 513 4 492 0.0 654
MsG0480020560.01.T01 MTR_4g053900 44.050 479 246 5 39 513 35 495 6.71e-143 420
MsG0480020560.01.T01 MTR_4g054820 44.468 479 240 9 39 510 32 491 1.30e-141 417
MsG0480020560.01.T01 MTR_5g072540 41.245 514 272 10 5 513 4 492 1.70e-135 401
MsG0480020560.01.T01 MTR_5g045330 42.887 478 236 5 39 513 35 478 3.10e-132 392
MsG0480020560.01.T01 MTR_1g054635 36.196 489 269 9 39 513 149 608 2.60e-100 315
MsG0480020560.01.T01 MTR_6g034620 43.989 366 163 7 151 513 1 327 9.73e-97 296
MsG0480020560.01.T01 MTR_4g054220 44.981 269 127 4 39 304 32 282 6.27e-77 244
MsG0480020560.01.T01 MTR_5g072550 44.444 252 134 3 265 513 1 249 5.23e-71 227
MsG0480020560.01.T01 MTR_6g039280 40.161 249 116 2 265 513 1 216 1.18e-50 172
MsG0480020560.01.T01 MTR_4g054240 40.566 212 123 3 304 513 20 230 5.37e-46 160
MsG0480020560.01.T01 MTR_6g034660 48.936 94 48 0 39 132 35 128 4.45e-23 95.1
MsG0480020560.01.T01 MTR_3g034830 44.828 58 31 1 457 513 4 61 9.30e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020560.01.T01 AT4G33790 53.094 501 214 5 12 512 14 493 0.0 546
MsG0480020560.01.T01 AT3G44540 50.418 478 215 5 39 513 34 492 1.21e-169 488
MsG0480020560.01.T01 AT5G22500 48.536 478 222 6 39 513 34 490 7.33e-166 479
MsG0480020560.01.T01 AT4G33790 54.887 399 161 4 114 512 1 380 2.88e-160 460
MsG0480020560.01.T01 AT3G44550 48.340 482 222 7 39 513 34 495 2.31e-156 455
MsG0480020560.01.T01 AT3G44560 45.825 515 249 9 6 513 4 495 2.96e-146 429
MsG0480020560.01.T01 AT5G22500 50.000 384 169 5 39 420 34 396 2.19e-133 392
MsG0480020560.01.T01 AT3G44560 46.436 463 221 8 6 464 4 443 1.80e-130 387
MsG0480020560.01.T01 AT3G44550 47.783 406 186 6 114 513 1 386 2.30e-127 377
MsG0480020560.01.T01 AT3G44560 47.031 421 196 8 6 422 4 401 6.14e-119 356
MsG0480020560.01.T01 AT5G22420 46.530 389 183 7 114 500 1 366 3.24e-117 350
MsG0480020560.01.T01 AT5G22420 48.179 357 173 6 146 500 4 350 3.80e-113 339
MsG0480020560.01.T01 AT5G22420 48.179 357 173 6 146 500 4 350 3.80e-113 339
MsG0480020560.01.T01 AT5G22420 48.179 357 173 6 146 500 56 402 9.39e-113 340
MsG0480020560.01.T01 AT3G44540 52.525 297 120 4 39 333 34 311 3.82e-104 315
MsG0480020560.01.T01 AT3G44540 52.525 297 120 4 39 333 34 311 3.82e-104 315
MsG0480020560.01.T01 AT3G11980 37.938 485 263 11 41 513 155 613 5.98e-104 324
MsG0480020560.01.T01 AT5G22420 48.589 319 159 4 183 500 1 315 1.69e-103 313
MsG0480020560.01.T01 AT5G22420 48.000 300 151 4 202 500 1 296 2.63e-95 291
MsG0480020560.01.T01 AT5G22420 48.000 300 151 4 202 500 1 296 2.63e-95 291
MsG0480020560.01.T01 AT3G56700 33.333 468 273 10 43 509 110 539 1.32e-79 259
MsG0480020560.01.T01 AT3G56700 32.051 468 258 9 43 509 110 518 7.56e-74 243

Find 100 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTACTTGCTTCCTTTAA+AGG 0.098124 4:+43339127 MsG0480020560.01.T01:CDS
AGAAATTGAATAACCTTTAA+AGG 0.182202 4:-43339140 None:intergenic
CAACTTGGTGTTTCACTAAA+TGG 0.185971 4:+43337684 MsG0480020560.01.T01:CDS
TAAAATTGCCATGAAGGATT+TGG 0.220004 4:+43337797 MsG0480020560.01.T01:CDS
TGCGGTTGGTTGAACTTTAC+AGG 0.263042 4:+43339732 MsG0480020560.01.T01:CDS
TATTGCTTGTAACATATATA+TGG 0.269412 4:+43340273 MsG0480020560.01.T01:three_prime_UTR
ATGCTTCCTTGCAGACTTAG+AGG 0.301520 4:+43338308 MsG0480020560.01.T01:CDS
TTCATGAACATTCATATTCC+TGG 0.304377 4:+43340051 MsG0480020560.01.T01:CDS
TTCCATTCCCAAATCCTTCA+TGG 0.309189 4:-43337805 None:intergenic
CCAAGAAAATTTCAATTTGA+AGG 0.310827 4:+43336576 MsG0480020560.01.T01:CDS
GACAGTTTAATTGTTGCATA+TGG 0.320149 4:+43338270 MsG0480020560.01.T01:CDS
GCTAGAGAGATTAATAATAT+TGG 0.323863 4:+43340137 MsG0480020560.01.T01:three_prime_UTR
TGCAACAATTAAACTGTCTA+TGG 0.329367 4:-43338265 None:intergenic
CCTTGAGCATAAGAATGTTT+TGG 0.335931 4:+43333780 MsG0480020560.01.T01:CDS
ACACTATGACCAAAATAAAA+AGG 0.338524 4:-43340314 None:intergenic
GGTAACTTTGCCAACTTTGA+TGG 0.345674 4:-43339063 None:intergenic
AACGAATGTACATGTATCTT+TGG 0.350065 4:-43339109 None:intergenic
AAAATTGCCATGAAGGATTT+GGG 0.357512 4:+43337798 MsG0480020560.01.T01:CDS
GCATTGGGTTTAAATACATT+TGG 0.366725 4:+43336815 MsG0480020560.01.T01:CDS
AGATAAAGTTTCTTCACATT+TGG 0.367398 4:-43333971 None:intergenic
CAGAATATAGTTTCACTTGA+AGG 0.368930 4:-43340088 None:intergenic
CAAAGAACCTTTCCCTGGTT+GGG 0.394468 4:+43338105 MsG0480020560.01.T01:CDS
CTTCCTTCCTTGTCAAAACA+TGG 0.404754 4:-43339038 None:intergenic
GTATAACTCTTGAAGTAGAT+TGG 0.417054 4:-43336602 None:intergenic
AGTTGGCAAAGTTACCGTAT+TGG 0.425068 4:+43339070 MsG0480020560.01.T01:CDS
TAAGTGCTGGTAATGATTGT+AGG 0.428342 4:-43338082 None:intergenic
GTGCTTGTCCACGTATCAAC+AGG 0.430498 4:+43336880 MsG0480020560.01.T01:CDS
GAAGCAGATCCCTGCTGATA+TGG 0.433499 4:+43338872 MsG0480020560.01.T01:intron
TTAATTGTTGCATATGGTAA+AGG 0.436186 4:+43338276 MsG0480020560.01.T01:CDS
CAACCAACCGCATCACAGTA+TGG 0.442539 4:-43339721 None:intergenic
AAGGAATATTTGACAATGCC+AGG 0.451920 4:-43340069 None:intergenic
CCTTTCCCTGGTTGGGTCGA+AGG 0.461087 4:+43338112 MsG0480020560.01.T01:CDS
AGGCCCTATGTGTTCTTCAA+TGG 0.461502 4:+43339752 MsG0480020560.01.T01:CDS
ATCACGTGGGTTCATCTGTT+GGG 0.467939 4:+43338958 MsG0480020560.01.T01:CDS
TTTGTAAAGACATATGTGTT+TGG 0.467992 4:-43337998 None:intergenic
TCAGAGCAAAATTATATGGT+TGG 0.482019 4:+43337975 MsG0480020560.01.T01:intron
CTTACTCCTTCGACCCAACC+AGG 0.485945 4:-43338118 None:intergenic
TATCACGTGGGTTCATCTGT+TGG 0.489042 4:+43338957 MsG0480020560.01.T01:CDS
CTGGTTGGGTCGAAGGAGTA+AGG 0.490574 4:+43338119 MsG0480020560.01.T01:CDS
AGTGAAACACCAAGTTGGTA+TGG 0.494139 4:-43337678 None:intergenic
TGAGGAAAAGAGAGTAGTTG+AGG 0.494819 4:+43337728 MsG0480020560.01.T01:CDS
GCATTCACCACCATATCAGC+AGG 0.497234 4:-43338882 None:intergenic
GGATACTAAAATTGCCATGA+AGG 0.498148 4:+43337791 MsG0480020560.01.T01:CDS
ACAAAGAACCTTTCCCTGGT+TGG 0.498389 4:+43338104 MsG0480020560.01.T01:CDS
GAAAGGTTCTTTGTAAGTGC+TGG 0.505594 4:-43338095 None:intergenic
TGCCATGAAGGATTTGGGAA+TGG 0.510799 4:+43337803 MsG0480020560.01.T01:CDS
CCAAAACATTCTTATGCTCA+AGG 0.514878 4:-43333780 None:intergenic
AATGCTAGTGGGAACTATGA+AGG 0.527078 4:+43338033 MsG0480020560.01.T01:CDS
TATGTCTTTACAAAGGCAAT+GGG 0.529172 4:+43338007 MsG0480020560.01.T01:CDS
GGACTTGTTCAAATTGCTGA+AGG 0.533109 4:+43336486 MsG0480020560.01.T01:CDS
ACAAGAGGGAGCTACTGAAA+AGG 0.533743 4:+43337770 MsG0480020560.01.T01:CDS
GAAGGAAGAGCCATCAAAGT+TGG 0.538912 4:+43339053 MsG0480020560.01.T01:CDS
ATACTGCCAAATTGATCCAT+TGG 0.540433 4:-43333745 None:intergenic
CTAAGACTCTCATATCTCAC+TGG 0.540860 4:-43338984 None:intergenic
TGCAGATATGATGTAGCATT+GGG 0.544440 4:+43336800 MsG0480020560.01.T01:CDS
ACTTACAAAGAACCTTTCCC+TGG 0.545331 4:+43338100 MsG0480020560.01.T01:CDS
AGAGAGATTAATAATATTGG+TGG 0.552498 4:+43340140 MsG0480020560.01.T01:three_prime_UTR
AAGACAAAGTGGAGTAGAGA+TGG 0.553343 4:+43339984 MsG0480020560.01.T01:CDS
ATGCAGATATGATGTAGCAT+TGG 0.559269 4:+43336799 MsG0480020560.01.T01:CDS
TTTAAACTTCTTATTACGTG+TGG 0.563068 4:+43340182 MsG0480020560.01.T01:three_prime_UTR
ATTGAACATGCTTCAACAAG+AGG 0.567383 4:+43337755 MsG0480020560.01.T01:CDS
GAATGCAATGCTAGTGGCCA+TGG 0.569856 4:+43338899 MsG0480020560.01.T01:CDS
CAAATAGCAGCAAGACAAAG+TGG 0.573597 4:+43339973 MsG0480020560.01.T01:CDS
CAACAACTAACTTTGATGAA+AGG 0.576712 4:+43336656 MsG0480020560.01.T01:CDS
ATATGTCTTTACAAAGGCAA+TGG 0.586877 4:+43338006 MsG0480020560.01.T01:CDS
ACGCCATTGAAGAACACATA+GGG 0.595025 4:-43339755 None:intergenic
GAGAGGAGGACTGATAGTAG+AGG 0.600345 4:+43337653 MsG0480020560.01.T01:CDS
GGCAATGGGAGAAATGCTAG+TGG 0.600756 4:+43338021 MsG0480020560.01.T01:CDS
CATTTAGTGAAACACCAAGT+TGG 0.601093 4:-43337683 None:intergenic
CAAAACATTCTTATGCTCAA+GGG 0.602965 4:-43333779 None:intergenic
TGAAGGATTTGGGAATGGAA+AGG 0.604642 4:+43337808 MsG0480020560.01.T01:CDS
CCTTCGACCCAACCAGGGAA+AGG 0.605631 4:-43338112 None:intergenic
TTAAATGTAGCATACGTATG+TGG 0.610970 4:+43337627 MsG0480020560.01.T01:intron
AAACTGCCTCTAAGTCTGCA+AGG 0.617704 4:-43338314 None:intergenic
AAATTGCTGAAGGAAAATCA+TGG 0.619305 4:+43336496 MsG0480020560.01.T01:CDS
GTTTCACTAAATGGAGTGCA+AGG 0.619534 4:+43337693 MsG0480020560.01.T01:CDS
AATACAAACCTGTTGATACG+TGG 0.632502 4:-43336888 None:intergenic
TGTAGGTCTCACAATAACAA+TGG 0.633502 4:-43338065 None:intergenic
TTACTCCTTCGACCCAACCA+GGG 0.637146 4:-43338117 None:intergenic
GCATACGTATGTGGAGAGAG+AGG 0.637651 4:+43337636 MsG0480020560.01.T01:intron
CACGCCATTGAAGAACACAT+AGG 0.641905 4:-43339756 None:intergenic
TGATGATAGCATATATCACG+TGG 0.642564 4:+43338944 MsG0480020560.01.T01:CDS
TTGAACATGCTTCAACAAGA+GGG 0.645462 4:+43337756 MsG0480020560.01.T01:CDS
GGTCCATACTGTGATGCGGT+TGG 0.646323 4:+43339718 MsG0480020560.01.T01:CDS
CACTAGAAGACTGCACAATG+AGG 0.647867 4:+43334024 MsG0480020560.01.T01:CDS
AATATGTACTTTGAAAATAG+CGG 0.651662 4:-43339679 None:intergenic
GCAAGGACTAGACATTGATG+AGG 0.656577 4:+43337710 MsG0480020560.01.T01:CDS
TTGATTTGCATGACTCACCA+TGG 0.657844 4:-43338916 None:intergenic
GTAGAGGATCCATACCAACT+TGG 0.659399 4:+43337669 MsG0480020560.01.T01:CDS
TACGTATGTGGAGAGAGAGG+AGG 0.668461 4:+43337639 MsG0480020560.01.T01:CDS
AAACACATATGTCTTTACAA+AGG 0.671076 4:+43338000 MsG0480020560.01.T01:CDS
GCAGATCCCTGCTGATATGG+TGG 0.671477 4:+43338875 MsG0480020560.01.T01:intron
GATACGTGGACAAGCACCTG+AGG 0.681260 4:-43336874 None:intergenic
AAAAGTGACTCTAGTGCCTG+GGG 0.681356 4:+43336546 MsG0480020560.01.T01:CDS
GCAATGGGAGAAATGCTAGT+GGG 0.681775 4:+43338022 MsG0480020560.01.T01:CDS
TGATATATGCTATCATCACA+AGG 0.681859 4:-43338939 None:intergenic
CATTCACCACCATATCAGCA+GGG 0.685104 4:-43338881 None:intergenic
GGAAGGTCCATACTGTGATG+CGG 0.690975 4:+43339714 MsG0480020560.01.T01:CDS
GGTGGTGAATGCAATGCTAG+TGG 0.712141 4:+43338893 MsG0480020560.01.T01:CDS
GATGATAGCATATATCACGT+GGG 0.729775 4:+43338945 MsG0480020560.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATATATATTT+AGG - Chr4:43336279-43336298 None:intergenic 0.0%
!! TATATATATATATATATTAT+TGG + Chr4:43337003-43337022 MsG0480020560.01.T01:intron 0.0%
!! AAAAAAATTATTTGTGTATA+AGG + Chr4:43334105-43334124 MsG0480020560.01.T01:intron 10.0%
!! AAATATCTTGAATAATATAT+TGG - Chr4:43335218-43335237 None:intergenic 10.0%
!! ATTAACTACAATAAAAAATT+TGG - Chr4:43338156-43338175 None:intergenic 10.0%
!! TAAAAAATTTCTAAATTTGA+TGG - Chr4:43337246-43337265 None:intergenic 10.0%
!! TGTATATTAATAGAAAAATA+CGG - Chr4:43335115-43335134 None:intergenic 10.0%
!!! AAAAATTAAACTTGTTTTTT+AGG + Chr4:43339495-43339514 MsG0480020560.01.T01:intron 10.0%
!!! AAAATTGTATATTTTCAAAT+GGG - Chr4:43335075-43335094 None:intergenic 10.0%
!!! TAGATTTTTATGTAATTTTA+CGG - Chr4:43334427-43334446 None:intergenic 10.0%
!!! TTATACACAAATAATTTTTT+TGG - Chr4:43334106-43334125 None:intergenic 10.0%
!!! TTTTAGTTAAATATGTTAAT+TGG - Chr4:43334970-43334989 None:intergenic 10.0%
!! AAATAATTATGTGTTAACTT+TGG - Chr4:43339228-43339247 None:intergenic 15.0%
!! AAATCACAAAAATATCTTAT+CGG + Chr4:43334598-43334617 MsG0480020560.01.T01:intron 15.0%
!! AAGTTATCTTAAATATAAGA+CGG + Chr4:43335885-43335904 MsG0480020560.01.T01:intron 15.0%
!! AATTCATGAAATTAATTATG+AGG + Chr4:43335747-43335766 MsG0480020560.01.T01:intron 15.0%
!! ACATAACTAAATGTATAATT+AGG + Chr4:43338811-43338830 MsG0480020560.01.T01:intron 15.0%
!! AGAACCAATAAAATAAAATA+TGG + Chr4:43337385-43337404 MsG0480020560.01.T01:intron 15.0%
!! AGGTATTTAAAAAATTAACA+TGG - Chr4:43338593-43338612 None:intergenic 15.0%
!! ATCTTCTTGAATTAAAAAAA+AGG + Chr4:43338759-43338778 MsG0480020560.01.T01:intron 15.0%
!! GTTTATTAAATTTGTGTATA+AGG + Chr4:43334074-43334093 MsG0480020560.01.T01:intron 15.0%
!! TCTTCTTGAATTAAAAAAAA+GGG + Chr4:43338760-43338779 MsG0480020560.01.T01:intron 15.0%
!! TGAATGAAAATTATAATTAG+TGG - Chr4:43335823-43335842 None:intergenic 15.0%
!!! AACTTTTATGATGTAAATTT+AGG + Chr4:43334903-43334922 MsG0480020560.01.T01:intron 15.0%
!!! AATTTGATGGATATAAATAT+AGG - Chr4:43337233-43337252 None:intergenic 15.0%
!!! ATATTTTATCCAAAGAATTT+GGG + Chr4:43338499-43338518 MsG0480020560.01.T01:intron 15.0%
!!! ATTAATTTGTGTTTTATAAC+AGG + Chr4:43339628-43339647 MsG0480020560.01.T01:intron 15.0%
!!! CAAAATTGTATATTTTCAAA+TGG - Chr4:43335076-43335095 None:intergenic 15.0%
!!! CTATTATTCATTTCAAATTT+TGG + Chr4:43339835-43339854 MsG0480020560.01.T01:intron 15.0%
!!! GTTATATTAGTCTTTTTTTA+AGG + Chr4:43336935-43336954 MsG0480020560.01.T01:intron 15.0%
!!! TAAGTTATATTTTACTTTTG+TGG + Chr4:43333928-43333947 MsG0480020560.01.T01:intron 15.0%
!!! TAATTAAATCAATTTTGTCT+AGG - Chr4:43338837-43338856 None:intergenic 15.0%
!!! TATTTTATTTTATTGGTTCT+AGG - Chr4:43337385-43337404 None:intergenic 15.0%
!!! TTAATTTGTGTTTTATAACA+GGG + Chr4:43339629-43339648 MsG0480020560.01.T01:intron 15.0%
!!! TTTAGTTTATCTTCTTTAAA+AGG + Chr4:43338356-43338375 MsG0480020560.01.T01:intron 15.0%
!!! TTTGTTGTTAATTTGTTTAT+TGG - Chr4:43337922-43337941 None:intergenic 15.0%
!!! TTTTTTCTAATACACAATTT+TGG - Chr4:43338787-43338806 None:intergenic 15.0%
!! AATTATTTGTGTATAAGGTA+CGG + Chr4:43334110-43334129 MsG0480020560.01.T01:intron 20.0%
!! AGAAATTGAATAACCTTTAA+AGG - Chr4:43339143-43339162 None:intergenic 20.0%
!! ATAAAAAGTGATCAAAATTG+TGG - Chr4:43338434-43338453 None:intergenic 20.0%
!! ATTAAAGGAACACATAATAA+AGG - Chr4:43338191-43338210 None:intergenic 20.0%
!! CCAATAAAATAAAATATGGT+AGG + Chr4:43337389-43337408 MsG0480020560.01.T01:intron 20.0%
!! GTAATTAATGATGATTATGT+TGG + Chr4:43334238-43334257 MsG0480020560.01.T01:intron 20.0%
!! TATTGCTTGTAACATATATA+TGG + Chr4:43340273-43340292 MsG0480020560.01.T01:three_prime_UTR 20.0%
!!! AATATGTACTTTGAAAATAG+CGG - Chr4:43339682-43339701 None:intergenic 20.0%
!!! AATGACTACATTCAATTTTT+TGG + Chr4:43335356-43335375 MsG0480020560.01.T01:intron 20.0%
!!! ACTTAATAAATTGAGAGTTT+TGG - Chr4:43334208-43334227 None:intergenic 20.0%
!!! ATTTTCAGAGCAAAATTATA+TGG + Chr4:43337971-43337990 MsG0480020560.01.T01:intron 20.0%
!!! CAAGTTTAATTTTTTTTCGT+AGG - Chr4:43339489-43339508 None:intergenic 20.0%
!!! CATGCAATTTATTTTAGTAA+TGG - Chr4:43334770-43334789 None:intergenic 20.0%
!!! CCTACCATATTTTATTTTAT+TGG - Chr4:43337392-43337411 None:intergenic 20.0%
!!! CTTCAAATTGAAATTTTCTT+GGG - Chr4:43336578-43336597 None:intergenic 20.0%
!!! CTTTTTGAGAATATCATAAT+TGG + Chr4:43335788-43335807 MsG0480020560.01.T01:intron 20.0%
!!! GATATTTTATCCAAAGAATT+TGG + Chr4:43338498-43338517 MsG0480020560.01.T01:intron 20.0%
!!! TAATTTGTGTTTTATAACAG+GGG + Chr4:43339630-43339649 MsG0480020560.01.T01:intron 20.0%
!!! TATATATGGATCACATTTTT+AGG + Chr4:43340287-43340306 MsG0480020560.01.T01:three_prime_UTR 20.0%
!!! TTATTTTATGAATGTTGTGT+TGG + Chr4:43340351-43340370 MsG0480020560.01.T01:three_prime_UTR 20.0%
!!! TTTTCCTCAATAAAAAAAGT+TGG + Chr4:43335915-43335934 MsG0480020560.01.T01:intron 20.0%
! AAAACTTTACCCAAATTCTT+TGG - Chr4:43338511-43338530 None:intergenic 25.0%
! AAACACATATGTCTTTACAA+AGG + Chr4:43338000-43338019 MsG0480020560.01.T01:CDS 25.0%
! AAAGATGCATATTGGAATTT+AGG - Chr4:43337108-43337127 None:intergenic 25.0%
! AAGAAGAAAAAAAACCCTAA+TGG + Chr4:43334933-43334952 MsG0480020560.01.T01:intron 25.0%
! AATAATGCATATATATGCAG+GGG + Chr4:43335970-43335989 MsG0480020560.01.T01:intron 25.0%
! AATGATTATGACATATAGGT+AGG - Chr4:43338673-43338692 None:intergenic 25.0%
! AATTTAATATGCTAAGATCC+AGG - Chr4:43339436-43339455 None:intergenic 25.0%
! ACACTATGACCAAAATAAAA+AGG - Chr4:43340317-43340336 None:intergenic 25.0%
! AGAGAGATTAATAATATTGG+TGG + Chr4:43340140-43340159 MsG0480020560.01.T01:three_prime_UTR 25.0%
! AGATAAAGTTTCTTCACATT+TGG - Chr4:43333974-43333993 None:intergenic 25.0%
! AGGTATGTATAGACATTAAA+AGG + Chr4:43334044-43334063 MsG0480020560.01.T01:intron 25.0%
! ATCCTAAAGTATATTTGTGA+TGG + Chr4:43336308-43336327 MsG0480020560.01.T01:intron 25.0%
! ATGAATTAGATTAGACAAGT+GGG - Chr4:43335734-43335753 None:intergenic 25.0%
! ATGTATCGAAATTAAACTCT+AGG + Chr4:43339286-43339305 MsG0480020560.01.T01:intron 25.0%
! CAAAAATATGAAGACCAAAA+GGG - Chr4:43338405-43338424 None:intergenic 25.0%
! CATTTAGTATCAATCAATGT+AGG + Chr4:43337559-43337578 MsG0480020560.01.T01:intron 25.0%
! CCAAGAAAATTTCAATTTGA+AGG + Chr4:43336576-43336595 MsG0480020560.01.T01:CDS 25.0%
! GAATAATGCATATATATGCA+GGG + Chr4:43335969-43335988 MsG0480020560.01.T01:intron 25.0%
! GACAAATGATTATGACATAT+AGG - Chr4:43338677-43338696 None:intergenic 25.0%
! GCTAGAGAGATTAATAATAT+TGG + Chr4:43340137-43340156 MsG0480020560.01.T01:three_prime_UTR 25.0%
! GTAAGTATTTAAAAGTGGTA+GGG + Chr4:43339404-43339423 MsG0480020560.01.T01:intron 25.0%
! GTCAAAAAGTTGTTAGAAAA+TGG + Chr4:43335551-43335570 MsG0480020560.01.T01:intron 25.0%
! TAAGATTAGTACACAAAAGA+CGG - Chr4:43334855-43334874 None:intergenic 25.0%
! TACTTGACCAAAAAAAAAGT+TGG + Chr4:43336058-43336077 MsG0480020560.01.T01:intron 25.0%
! TCAAAAATATGAAGACCAAA+AGG - Chr4:43338406-43338425 None:intergenic 25.0%
! TCAATTGTGTCAAGTATTAT+GGG + Chr4:43335273-43335292 MsG0480020560.01.T01:intron 25.0%
! TGGAAAAATAGAAGTAATTG+AGG - Chr4:43339169-43339188 None:intergenic 25.0%
! TGTAGCAGTCTATTTATTAT+AGG + Chr4:43335330-43335349 MsG0480020560.01.T01:intron 25.0%
! TGTATCGAAATTAAACTCTA+GGG + Chr4:43339287-43339306 MsG0480020560.01.T01:intron 25.0%
! TTAATAGATAACGAGTACAA+CGG - Chr4:43339322-43339341 None:intergenic 25.0%
! TTAATTGTTGCATATGGTAA+AGG + Chr4:43338276-43338295 MsG0480020560.01.T01:CDS 25.0%
! TTTAAACTTCTTATTACGTG+TGG + Chr4:43340182-43340201 MsG0480020560.01.T01:three_prime_UTR 25.0%
! TTTGAAAAGCTCTCATTTAT+CGG + Chr4:43337049-43337068 MsG0480020560.01.T01:intron 25.0%
! TTTGTAAAGACATATGTGTT+TGG - Chr4:43338001-43338020 None:intergenic 25.0%
!! CCTTCAAATTGAAATTTTCT+TGG - Chr4:43336579-43336598 None:intergenic 25.0%
!! GAAAACTCTTAACATTCTTT+TGG + Chr4:43334399-43334418 MsG0480020560.01.T01:intron 25.0%
!! GCTATTCATATTTTCCAATA+CGG - Chr4:43339087-43339106 None:intergenic 25.0%
!! GTTTAATTTCGATACATTGT+CGG - Chr4:43339283-43339302 None:intergenic 25.0%
!! TAGATGAATTTTCAATTACG+TGG + Chr4:43337268-43337287 MsG0480020560.01.T01:intron 25.0%
!! TTGATTTTCTCTCTTTTGAT+TGG + Chr4:43335458-43335477 MsG0480020560.01.T01:intron 25.0%
!!! ACTTCCAACTTTTTTTATTG+AGG - Chr4:43335922-43335941 None:intergenic 25.0%
!!! AGTTGATATTATTACCCTTT+TGG + Chr4:43338388-43338407 MsG0480020560.01.T01:intron 25.0%
!!! ATAAGAATGTTTTGGTACTT+TGG + Chr4:43333788-43333807 MsG0480020560.01.T01:CDS 25.0%
!!! GAACGGTAACAATTTTTTAT+AGG - Chr4:43335657-43335676 None:intergenic 25.0%
!!! GCATTTTCCAACTTTTTTTT+TGG - Chr4:43336068-43336087 None:intergenic 25.0%
!!! GTTTTCTGTTAGTTTATTGT+AGG - Chr4:43338571-43338590 None:intergenic 25.0%
!!! TTAGGTGTACCTTTTTATTT+TGG + Chr4:43340305-43340324 MsG0480020560.01.T01:three_prime_UTR 25.0%
!!! TTGGGTAAAGTTTTGATAAT+AGG + Chr4:43338517-43338536 MsG0480020560.01.T01:intron 25.0%
AAAATAGCAGTTTAAACGGT+TGG + Chr4:43335686-43335705 MsG0480020560.01.T01:intron 30.0%
AAAATTGCCATGAAGGATTT+GGG + Chr4:43337798-43337817 MsG0480020560.01.T01:CDS 30.0%
AAATACGGTCAAAGTAAGTT+AGG - Chr4:43335100-43335119 None:intergenic 30.0%
AAATTGCTGAAGGAAAATCA+TGG + Chr4:43336496-43336515 MsG0480020560.01.T01:CDS 30.0%
AACGAATGTACATGTATCTT+TGG - Chr4:43339112-43339131 None:intergenic 30.0%
ACAAGTGAAGTGGTTATTTA+AGG + Chr4:43337301-43337320 MsG0480020560.01.T01:intron 30.0%
AGAATATCATAATTGGTGAG+TGG + Chr4:43335795-43335814 MsG0480020560.01.T01:intron 30.0%
ATATGTCTTTACAAAGGCAA+TGG + Chr4:43338006-43338025 MsG0480020560.01.T01:CDS 30.0%
CAAAACATTCTTATGCTCAA+GGG - Chr4:43333782-43333801 None:intergenic 30.0%
CAACAACTAACTTTGATGAA+AGG + Chr4:43336656-43336675 MsG0480020560.01.T01:CDS 30.0%
CACCATCACAAATATACTTT+AGG - Chr4:43336313-43336332 None:intergenic 30.0%
CAGAATATAGTTTCACTTGA+AGG - Chr4:43340091-43340110 None:intergenic 30.0%
CATGAATTAGATTAGACAAG+TGG - Chr4:43335735-43335754 None:intergenic 30.0%
CATGAGAGGAGTAAAAAAAA+AGG - Chr4:43334371-43334390 None:intergenic 30.0%
CGTAAGTATTTAAAAGTGGT+AGG + Chr4:43339403-43339422 MsG0480020560.01.T01:intron 30.0%
CTTGTCTATTACTCCATTTA+AGG - Chr4:43337480-43337499 None:intergenic 30.0%
GAATACCACAAAAGTTTAGT+TGG + Chr4:43337520-43337539 MsG0480020560.01.T01:intron 30.0%
GACAGTTTAATTGTTGCATA+TGG + Chr4:43338270-43338289 MsG0480020560.01.T01:CDS 30.0%
GCAACGTAAGTATTTAAAAG+TGG + Chr4:43339399-43339418 MsG0480020560.01.T01:intron 30.0%
GCATTGGGTTTAAATACATT+TGG + Chr4:43336815-43336834 MsG0480020560.01.T01:CDS 30.0%
GGAATAATGCATATATATGC+AGG + Chr4:43335968-43335987 MsG0480020560.01.T01:intron 30.0%
GTACTATAAGTGAGTAAAGA+TGG + Chr4:43334311-43334330 MsG0480020560.01.T01:intron 30.0%
GTATAACTCTTGAAGTAGAT+TGG - Chr4:43336605-43336624 None:intergenic 30.0%
GTCAATTGTGTCAAGTATTA+TGG + Chr4:43335272-43335291 MsG0480020560.01.T01:intron 30.0%
GTGATATTTGTACAACTCTT+TGG + Chr4:43335416-43335435 MsG0480020560.01.T01:intron 30.0%
TAAAATTGCCATGAAGGATT+TGG + Chr4:43337797-43337816 MsG0480020560.01.T01:CDS 30.0%
TAATAGATAACGAGTACAAC+GGG - Chr4:43339321-43339340 None:intergenic 30.0%
TATGTCTTTACAAAGGCAAT+GGG + Chr4:43338007-43338026 MsG0480020560.01.T01:CDS 30.0%
TCACAAAAATATCTTATCGG+TGG + Chr4:43334601-43334620 MsG0480020560.01.T01:intron 30.0%
TCACCTTAAAAGTGAATAAG+TGG - Chr4:43336019-43336038 None:intergenic 30.0%
TCAGAGCAAAATTATATGGT+TGG + Chr4:43337975-43337994 MsG0480020560.01.T01:intron 30.0%
TGACCCAAAAATGATTAACT+GGG + Chr4:43340020-43340039 MsG0480020560.01.T01:CDS 30.0%
TGATATATGCTATCATCACA+AGG - Chr4:43338942-43338961 None:intergenic 30.0%
TGCAACAATTAAACTGTCTA+TGG - Chr4:43338268-43338287 None:intergenic 30.0%
TGTGTCTTGAAAAATTCTTG+AGG - Chr4:43336110-43336129 None:intergenic 30.0%
TTAAATGTAGCATACGTATG+TGG + Chr4:43337627-43337646 MsG0480020560.01.T01:intron 30.0%
TTATGAATGTTGTGTTGGAT+AGG + Chr4:43340356-43340375 MsG0480020560.01.T01:three_prime_UTR 30.0%
TTATGTTGGTATCTTAAGTG+TGG + Chr4:43334252-43334271 MsG0480020560.01.T01:intron 30.0%
TTCATGAACATTCATATTCC+TGG + Chr4:43340051-43340070 MsG0480020560.01.T01:CDS 30.0%
TTGACCCAAAAATGATTAAC+TGG + Chr4:43340019-43340038 MsG0480020560.01.T01:CDS 30.0%
TTTCGTAGGTACAATTCATA+CGG - Chr4:43339475-43339494 None:intergenic 30.0%
! AGAGCTTTTCAAACAATCTT+GGG - Chr4:43337042-43337061 None:intergenic 30.0%
! ATAGTGGAAAAGATGCATAT+TGG - Chr4:43337116-43337135 None:intergenic 30.0%
! ATATTTTACTTGCACGTCAT+TGG + Chr4:43338703-43338722 MsG0480020560.01.T01:intron 30.0%
! ATCGGAAAGATAGTTTTTGA+TGG + Chr4:43337067-43337086 MsG0480020560.01.T01:intron 30.0%
! ATGCATTGACATGCTTAATA+AGG + Chr4:43335250-43335269 MsG0480020560.01.T01:intron 30.0%
! CTACAGCTTCAGATATTTTA+CGG + Chr4:43339010-43339029 MsG0480020560.01.T01:CDS 30.0%
! GAAAAATAGTTTGTCAGAAG+TGG - Chr4:43337328-43337347 None:intergenic 30.0%
! GAATGTTAAGAGTTTTCTCT+TGG - Chr4:43334396-43334415 None:intergenic 30.0%
! TCATATGTAGATTTTGCGAA+AGG + Chr4:43336465-43336484 MsG0480020560.01.T01:intron 30.0%
! TCTTTTCCACTATAATCTCT+CGG + Chr4:43337123-43337142 MsG0480020560.01.T01:intron 30.0%
!! ACTCCACTTATTCACTTTTA+AGG + Chr4:43336013-43336032 MsG0480020560.01.T01:intron 30.0%
!! AGTCAATTGTTTTGCATGAA+TGG - Chr4:43339189-43339208 None:intergenic 30.0%
!! CTATTTTTCGCAATTCAATG+TGG + Chr4:43337339-43337358 MsG0480020560.01.T01:intron 30.0%
!! GAAATTAAACTCTAGGGTTT+GGG + Chr4:43339293-43339312 MsG0480020560.01.T01:intron 30.0%
!! TAGTTGGTGAACTTAATATG+TGG + Chr4:43337536-43337555 MsG0480020560.01.T01:intron 30.0%
!! TTATCTTCTTTTGAGAGCTA+CGG + Chr4:43333988-43334007 MsG0480020560.01.T01:CDS 30.0%
!! TTTTTGAGCTTGAGCAATAT+AGG + Chr4:43337183-43337202 MsG0480020560.01.T01:intron 30.0%
!!! AACGTCACACTTTTTTGAAA+TGG + Chr4:43338729-43338748 MsG0480020560.01.T01:intron 30.0%
!!! ACCGTTTAAACTGCTATTTT+CGG - Chr4:43335686-43335705 None:intergenic 30.0%
!!! ACGTCACACTTTTTTGAAAT+GGG + Chr4:43338730-43338749 MsG0480020560.01.T01:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG + Chr4:43336112-43336131 MsG0480020560.01.T01:intron 30.0%
!!! ATATTTTGATATCAGCAGGA+AGG + Chr4:43339697-43339716 MsG0480020560.01.T01:CDS 30.0%
!!! GTACATATTTTGATATCAGC+AGG + Chr4:43339693-43339712 MsG0480020560.01.T01:CDS 30.0%
AAACACAAGGACAAAAAGAG+AGG - Chr4:43334158-43334177 None:intergenic 35.0%
AACACAAGGACAAAAAGAGA+GGG - Chr4:43334157-43334176 None:intergenic 35.0%
AAGGAATATTTGACAATGCC+AGG - Chr4:43340072-43340091 None:intergenic 35.0%
AATACAAACCTGTTGATACG+TGG - Chr4:43336891-43336910 None:intergenic 35.0%
ACTATAATCTCTCGGATTCT+AGG + Chr4:43337131-43337150 MsG0480020560.01.T01:intron 35.0%
ACTGCAACACATACCTTAAA+TGG + Chr4:43337464-43337483 MsG0480020560.01.T01:intron 35.0%
AGGTATGTGTTGCAGTATTA+TGG - Chr4:43337460-43337479 None:intergenic 35.0%
AGTGTAGAAAACAAGTGAAG+TGG + Chr4:43337291-43337310 MsG0480020560.01.T01:intron 35.0%
ATGCAGATATGATGTAGCAT+TGG + Chr4:43336799-43336818 MsG0480020560.01.T01:CDS 35.0%
ATGTCTCATGAAGAAACACA+AGG - Chr4:43334171-43334190 None:intergenic 35.0%
ATTGAACATGCTTCAACAAG+AGG + Chr4:43337755-43337774 MsG0480020560.01.T01:CDS 35.0%
CATTTAGTGAAACACCAAGT+TGG - Chr4:43337686-43337705 None:intergenic 35.0%
CCAAAACATTCTTATGCTCA+AGG - Chr4:43333783-43333802 None:intergenic 35.0%
CCCGAAAATAGCAGTTTAAA+CGG + Chr4:43335682-43335701 MsG0480020560.01.T01:intron 35.0%
GATGATAGCATATATCACGT+GGG + Chr4:43338945-43338964 MsG0480020560.01.T01:CDS 35.0%
GATTATGACATATAGGTAGG+TGG - Chr4:43338670-43338689 None:intergenic 35.0%
GGATACTAAAATTGCCATGA+AGG + Chr4:43337791-43337810 MsG0480020560.01.T01:CDS 35.0%
TAGAATCCGAGAGATTATAG+TGG - Chr4:43337132-43337151 None:intergenic 35.0%
TAGGTGGATGGGTATATTAT+AGG - Chr4:43338654-43338673 None:intergenic 35.0%
TCATGCATATGCTCTTTCTT+TGG + Chr4:43334688-43334707 MsG0480020560.01.T01:intron 35.0%
TCCAAATCTACTGTTGTTGT+CGG + Chr4:43334630-43334649 MsG0480020560.01.T01:intron 35.0%
TCGTTACTTGCTTCCTTTAA+AGG + Chr4:43339127-43339146 MsG0480020560.01.T01:CDS 35.0%
TGATGATAGCATATATCACG+TGG + Chr4:43338944-43338963 MsG0480020560.01.T01:CDS 35.0%
TGCAGATATGATGTAGCATT+GGG + Chr4:43336800-43336819 MsG0480020560.01.T01:CDS 35.0%
TGTAGGTCTCACAATAACAA+TGG - Chr4:43338068-43338087 None:intergenic 35.0%
TTATGGTCATATGTTGAGCT+TGG - Chr4:43337443-43337462 None:intergenic 35.0%
TTCAAATGGGTCATCTATTG+CGG - Chr4:43335062-43335081 None:intergenic 35.0%
TTGAACATGCTTCAACAAGA+GGG + Chr4:43337756-43337775 MsG0480020560.01.T01:CDS 35.0%
TTGCCAAAAATTGTAACCTC+AGG + Chr4:43336858-43336877 MsG0480020560.01.T01:CDS 35.0%
TTGTGTCAAGTATTATGGGA+TGG + Chr4:43335277-43335296 MsG0480020560.01.T01:intron 35.0%
! ATGCTCTTTCTTTGGTAACA+TGG + Chr4:43334696-43334715 MsG0480020560.01.T01:intron 35.0%
! ATGGAGGGAGTAACATTTTA+AGG + Chr4:43335296-43335315 MsG0480020560.01.T01:intron 35.0%
! CCTTGAGCATAAGAATGTTT+TGG + Chr4:43333780-43333799 MsG0480020560.01.T01:CDS 35.0%
! GAGAGCTTTTCAAACAATCT+TGG - Chr4:43337043-43337062 None:intergenic 35.0%
! GTTCACCAACTAAACTTTTG+TGG - Chr4:43337528-43337547 None:intergenic 35.0%
! TCCTCCCAGTTAATCATTTT+TGG - Chr4:43340027-43340046 None:intergenic 35.0%
!! CAACTTGGTGTTTCACTAAA+TGG + Chr4:43337684-43337703 MsG0480020560.01.T01:CDS 35.0%
!! CCTCCCAGTTAATCATTTTT+GGG - Chr4:43340026-43340045 None:intergenic 35.0%
!! CGAAATTAAACTCTAGGGTT+TGG + Chr4:43339292-43339311 MsG0480020560.01.T01:intron 35.0%
!! GTACACAAAAGACGGATTTT+TGG - Chr4:43334847-43334866 None:intergenic 35.0%
!! TAAGTGCTGGTAATGATTGT+AGG - Chr4:43338085-43338104 None:intergenic 35.0%
!! TGGTGTCTTTTTCACCATTA+GGG - Chr4:43334950-43334969 None:intergenic 35.0%
!! TTGGTGTCTTTTTCACCATT+AGG - Chr4:43334951-43334970 None:intergenic 35.0%
!! TTTTTGGTCAAGTAGCCTAT+CGG - Chr4:43336052-43336071 None:intergenic 35.0%
!!! AAACCATGTTTTGACAAGGA+AGG + Chr4:43339035-43339054 MsG0480020560.01.T01:CDS 35.0%
!!! CCGTTTAAACTGCTATTTTC+GGG - Chr4:43335685-43335704 None:intergenic 35.0%
!!! CGTCACACTTTTTTGAAATG+GGG + Chr4:43338731-43338750 MsG0480020560.01.T01:intron 35.0%
!!! GAAAGAGAGTTACTTTTGCA+AGG - Chr4:43333826-43333845 None:intergenic 35.0%
AAAAAGTGACTCTAGTGCCT+GGG + Chr4:43336545-43336564 MsG0480020560.01.T01:CDS 40.0%
AAGACAAAGTGGAGTAGAGA+TGG + Chr4:43339984-43340003 MsG0480020560.01.T01:CDS 40.0%
AATGCTAGTGGGAACTATGA+AGG + Chr4:43338033-43338052 MsG0480020560.01.T01:CDS 40.0%
ACCGACAACAACAGTAGATT+TGG - Chr4:43334634-43334653 None:intergenic 40.0%
ACGCCATTGAAGAACACATA+GGG - Chr4:43339758-43339777 None:intergenic 40.0%
ACTTACAAAGAACCTTTCCC+TGG + Chr4:43338100-43338119 MsG0480020560.01.T01:CDS 40.0%
AGTTGGCAAAGTTACCGTAT+TGG + Chr4:43339070-43339089 MsG0480020560.01.T01:CDS 40.0%
ATGACATATAGGTAGGTGGA+TGG - Chr4:43338666-43338685 None:intergenic 40.0%
ATGCATATATATGCAGGGGT+CGG + Chr4:43335974-43335993 MsG0480020560.01.T01:intron 40.0%
CAAATAGCAGCAAGACAAAG+TGG + Chr4:43339973-43339992 MsG0480020560.01.T01:CDS 40.0%
CCCAAAAATGATTAACTGGG+AGG + Chr4:43340023-43340042 MsG0480020560.01.T01:CDS 40.0%
CTAAGACTCTCATATCTCAC+TGG - Chr4:43338987-43339006 None:intergenic 40.0%
CTCACCAATGTCATGTAGAA+CGG + Chr4:43334661-43334680 MsG0480020560.01.T01:intron 40.0%
CTTCCTTCCTTGTCAAAACA+TGG - Chr4:43339041-43339060 None:intergenic 40.0%
GAAAGGTTCTTTGTAAGTGC+TGG - Chr4:43338098-43338117 None:intergenic 40.0%
GAGGTGGGTGTGAAAATTAA+TGG - Chr4:43336360-43336379 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - Chr4:43336191-43336210 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + Chr4:43336199-43336218 MsG0480020560.01.T01:intron 40.0%
GGTAAATATCTCACGTTGGA+TGG + Chr4:43334273-43334292 MsG0480020560.01.T01:intron 40.0%
GGTAACTTTGCCAACTTTGA+TGG - Chr4:43339066-43339085 None:intergenic 40.0%
GGTTAATCTTACGTGCTAGT+AGG - Chr4:43337415-43337434 None:intergenic 40.0%
GTCAAGTATTATGGGATGGA+GGG + Chr4:43335281-43335300 MsG0480020560.01.T01:intron 40.0%
GTGTGGTAAATATCTCACGT+TGG + Chr4:43334269-43334288 MsG0480020560.01.T01:intron 40.0%
GTTTCACTAAATGGAGTGCA+AGG + Chr4:43337693-43337712 MsG0480020560.01.T01:CDS 40.0%
TGAAGGATTTGGGAATGGAA+AGG + Chr4:43337808-43337827 MsG0480020560.01.T01:CDS 40.0%
TGACATATAGGTAGGTGGAT+GGG - Chr4:43338665-43338684 None:intergenic 40.0%
TGTCAAGTATTATGGGATGG+AGG + Chr4:43335280-43335299 MsG0480020560.01.T01:intron 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - Chr4:43336165-43336184 None:intergenic 40.0%
TTAAGCGTATACCCGCAAAA+CGG + Chr4:43339372-43339391 MsG0480020560.01.T01:intron 40.0%
TTCCATTCCCAAATCCTTCA+TGG - Chr4:43337808-43337827 None:intergenic 40.0%
! AAAGTGGTAGGGTTTTTACC+TGG + Chr4:43339415-43339434 MsG0480020560.01.T01:intron 40.0%
! AAGTGAATAAGTGGAGTGTC+CGG - Chr4:43336010-43336029 None:intergenic 40.0%
! AGGAAGTGTGGCTGAAAAAT+AGG - Chr4:43336171-43336190 None:intergenic 40.0%
! CAGTTTTTGATGTGGTGAGA+AGG + Chr4:43338331-43338350 MsG0480020560.01.T01:intron 40.0%
! CATATGTTGAGCTTGGTTCT+AGG - Chr4:43337436-43337455 None:intergenic 40.0%
! CTTAGAGGCAGTTTTTGATG+TGG + Chr4:43338323-43338342 MsG0480020560.01.T01:CDS 40.0%
! GCACCTGAGGTTACAATTTT+TGG - Chr4:43336864-43336883 None:intergenic 40.0%
! GGACTTGTTCAAATTGCTGA+AGG + Chr4:43336486-43336505 MsG0480020560.01.T01:CDS 40.0%
! GTTTTCTCTTGGATCATGAG+AGG - Chr4:43334385-43334404 None:intergenic 40.0%
!! AGTGAAACACCAAGTTGGTA+TGG - Chr4:43337681-43337700 None:intergenic 40.0%
!! GCTATTTTCGGGAAGATGAA+CGG - Chr4:43335674-43335693 None:intergenic 40.0%
!! TTGATTTGCATGACTCACCA+TGG - Chr4:43338919-43338938 None:intergenic 40.0%
!!! CTCGGATTCTAGGTTTTGTT+AGG + Chr4:43337141-43337160 MsG0480020560.01.T01:intron 40.0%
!!! GGCAAAACCATGTTTTGACA+AGG + Chr4:43339031-43339050 MsG0480020560.01.T01:CDS 40.0%
AAAAGTGACTCTAGTGCCTG+GGG + Chr4:43336546-43336565 MsG0480020560.01.T01:CDS 45.0%
AAACTGCCTCTAAGTCTGCA+AGG - Chr4:43338317-43338336 None:intergenic 45.0%
ACAAAGAACCTTTCCCTGGT+TGG + Chr4:43338104-43338123 MsG0480020560.01.T01:CDS 45.0%
ACAAGAGGGAGCTACTGAAA+AGG + Chr4:43337770-43337789 MsG0480020560.01.T01:CDS 45.0%
ACCAATGTCATGTAGAACGG+TGG + Chr4:43334664-43334683 MsG0480020560.01.T01:intron 45.0%
AGCCACACTTCCTTGAATTG+TGG + Chr4:43336178-43336197 MsG0480020560.01.T01:intron 45.0%
AGGCCCTATGTGTTCTTCAA+TGG + Chr4:43339752-43339771 MsG0480020560.01.T01:CDS 45.0%
ATCACGTGGGTTCATCTGTT+GGG + Chr4:43338958-43338977 MsG0480020560.01.T01:CDS 45.0%
ATGCTTCCTTGCAGACTTAG+AGG + Chr4:43338308-43338327 MsG0480020560.01.T01:CDS 45.0%
ATGGGTCATCTATTGCGGAA+CGG - Chr4:43335057-43335076 None:intergenic 45.0%
CAAAGAACCTTTCCCTGGTT+GGG + Chr4:43338105-43338124 MsG0480020560.01.T01:CDS 45.0%
CACGCCATTGAAGAACACAT+AGG - Chr4:43339759-43339778 None:intergenic 45.0%
CACTAGAAGACTGCACAATG+AGG + Chr4:43334024-43334043 MsG0480020560.01.T01:CDS 45.0%
CATTCACCACCATATCAGCA+GGG - Chr4:43338884-43338903 None:intergenic 45.0%
CGTTCTACATGACATTGGTG+AGG - Chr4:43334663-43334682 None:intergenic 45.0%
GAAAAAGTGACTCTAGTGCC+TGG + Chr4:43336544-43336563 MsG0480020560.01.T01:CDS 45.0%
GAAGGAAGAGCCATCAAAGT+TGG + Chr4:43339053-43339072 MsG0480020560.01.T01:CDS 45.0%
GCAAGGACTAGACATTGATG+AGG + Chr4:43337710-43337729 MsG0480020560.01.T01:CDS 45.0%
GCAATGGGAGAAATGCTAGT+GGG + Chr4:43338022-43338041 MsG0480020560.01.T01:CDS 45.0%
GGTGAATTTCTCTAGCCGAT+AGG + Chr4:43336034-43336053 MsG0480020560.01.T01:intron 45.0%
GTAGAGGATCCATACCAACT+TGG + Chr4:43337669-43337688 MsG0480020560.01.T01:CDS 45.0%
GTGACAAACGTTACGTCTCT+TGG + Chr4:43334561-43334580 MsG0480020560.01.T01:intron 45.0%
TACCAAGTGAGCTAAGCTCA+CGG - Chr4:43335947-43335966 None:intergenic 45.0%
TATCACGTGGGTTCATCTGT+TGG + Chr4:43338957-43338976 MsG0480020560.01.T01:CDS 45.0%
TCCACCGTTCTACATGACAT+TGG - Chr4:43334668-43334687 None:intergenic 45.0%
TGAGCTTAGCTCACTTGGTA+AGG + Chr4:43335947-43335966 MsG0480020560.01.T01:intron 45.0%
TGCATATATATGCAGGGGTC+GGG + Chr4:43335975-43335994 MsG0480020560.01.T01:intron 45.0%
TGCCACAATTCAAGGAAGTG+TGG - Chr4:43336183-43336202 None:intergenic 45.0%
TGCCATGAAGGATTTGGGAA+TGG + Chr4:43337803-43337822 MsG0480020560.01.T01:CDS 45.0%
! AGTGAATAAGTGGAGTGTCC+GGG - Chr4:43336009-43336028 None:intergenic 45.0%
! TACGTTGCAAGTCCGTTTTG+CGG - Chr4:43339387-43339406 None:intergenic 45.0%
! TGCGGTTGGTTGAACTTTAC+AGG + Chr4:43339732-43339751 MsG0480020560.01.T01:CDS 45.0%
! TTTTCTTGGGAAATGTCCCC+AGG - Chr4:43336565-43336584 None:intergenic 45.0%
!!! TTTTGGTACTTTGGTGCTGC+TGG + Chr4:43333797-43333816 MsG0480020560.01.T01:CDS 45.0%
!! TAATAATTAAAGAAAATTAA+AGG - Chr4:43338206-43338225 None:intergenic 5.0%
!! TTCATAAAATAAAATAAAAA+AGG - Chr4:43340343-43340362 None:intergenic 5.0%
!!! AAAAATATTAATATGATTTT+TGG + Chr4:43338614-43338633 MsG0480020560.01.T01:intron 5.0%
!!! AAATCATATTAATATTTTTT+AGG - Chr4:43338613-43338632 None:intergenic 5.0%
AAGATGGTGTCCACCCTTGT+CGG + Chr4:43334327-43334346 MsG0480020560.01.T01:intron 50.0%
ACCAAGTGAGCTAAGCTCAC+GGG - Chr4:43335946-43335965 None:intergenic 50.0%
ATACCGAGAGTAACCCGACA+AGG - Chr4:43334344-43334363 None:intergenic 50.0%
CAACCAACCGCATCACAGTA+TGG - Chr4:43339724-43339743 None:intergenic 50.0%
GAAGCAGATCCCTGCTGATA+TGG + Chr4:43338872-43338891 MsG0480020560.01.T01:intron 50.0%
GAATGCAATGCTAGTGGCCA+TGG + Chr4:43338899-43338918 MsG0480020560.01.T01:CDS 50.0%
GAGAGGAGGACTGATAGTAG+AGG + Chr4:43337653-43337672 MsG0480020560.01.T01:CDS 50.0%
GCATACGTATGTGGAGAGAG+AGG + Chr4:43337636-43337655 MsG0480020560.01.T01:intron 50.0%
GCATATATATGCAGGGGTCG+GGG + Chr4:43335976-43335995 MsG0480020560.01.T01:intron 50.0%
GCATTCACCACCATATCAGC+AGG - Chr4:43338885-43338904 None:intergenic 50.0%
GGAAGGTCCATACTGTGATG+CGG + Chr4:43339714-43339733 MsG0480020560.01.T01:CDS 50.0%
GGCAATGGGAGAAATGCTAG+TGG + Chr4:43338021-43338040 MsG0480020560.01.T01:CDS 50.0%
GGTGGTGAATGCAATGCTAG+TGG + Chr4:43338893-43338912 MsG0480020560.01.T01:CDS 50.0%
GTCATCTATTGCGGAACGGA+TGG - Chr4:43335053-43335072 None:intergenic 50.0%
GTGCTTGTCCACGTATCAAC+AGG + Chr4:43336880-43336899 MsG0480020560.01.T01:CDS 50.0%
TACCGAGAGTAACCCGACAA+GGG - Chr4:43334343-43334362 None:intergenic 50.0%
TACGTATGTGGAGAGAGAGG+AGG + Chr4:43337639-43337658 MsG0480020560.01.T01:CDS 50.0%
TTACTCCTTCGACCCAACCA+GGG - Chr4:43338120-43338139 None:intergenic 50.0%
! ACGTTGCAAGTCCGTTTTGC+GGG - Chr4:43339386-43339405 None:intergenic 50.0%
! ATTTTCACACCCACCTCACG+TGG + Chr4:43336363-43336382 MsG0480020560.01.T01:intron 50.0%
! GTGAATAAGTGGAGTGTCCG+GGG - Chr4:43336008-43336027 None:intergenic 50.0%
! TTTTCACACCCACCTCACGT+GGG + Chr4:43336364-43336383 MsG0480020560.01.T01:intron 50.0%
AGATGGTGTCCACCCTTGTC+GGG + Chr4:43334328-43334347 MsG0480020560.01.T01:intron 55.0%
CACCCTTGTCGGGTTACTCT+CGG + Chr4:43334338-43334357 MsG0480020560.01.T01:intron 55.0%
CCAAGTGAGCTAAGCTCACG+GGG - Chr4:43335945-43335964 None:intergenic 55.0%
CTGGTTGGGTCGAAGGAGTA+AGG + Chr4:43338119-43338138 MsG0480020560.01.T01:CDS 55.0%
CTTACTCCTTCGACCCAACC+AGG - Chr4:43338121-43338140 None:intergenic 55.0%
GATACGTGGACAAGCACCTG+AGG - Chr4:43336877-43336896 None:intergenic 55.0%
GCAGATCCCTGCTGATATGG+TGG + Chr4:43338875-43338894 MsG0480020560.01.T01:intron 55.0%
GGTCCATACTGTGATGCGGT+TGG + Chr4:43339718-43339737 MsG0480020560.01.T01:CDS 55.0%
TTTCACACCCACCTCACGTG+GGG + Chr4:43336365-43336384 MsG0480020560.01.T01:intron 55.0%
CCCCGTGAGCTTAGCTCACT+TGG + Chr4:43335942-43335961 MsG0480020560.01.T01:intron 60.0%
CCTTCGACCCAACCAGGGAA+AGG - Chr4:43338115-43338134 None:intergenic 60.0%
CCTTTCCCTGGTTGGGTCGA+AGG + Chr4:43338112-43338131 MsG0480020560.01.T01:CDS 60.0%
CGAGAGTAACCCGACAAGGG+TGG - Chr4:43334340-43334359 None:intergenic 60.0%
CAAGCCTCCCCACGTGAGGT+GGG - Chr4:43336375-43336394 None:intergenic 65.0%
TAGCCAAGCCTCCCCACGTG+AGG - Chr4:43336379-43336398 None:intergenic 65.0%
AGGGGTCGGGGTTCGAACCC+CGG + Chr4:43335988-43336007 MsG0480020560.01.T01:intron 70.0%
CACACCCACCTCACGTGGGG+AGG + Chr4:43336368-43336387 MsG0480020560.01.T01:intron 70.0%
CCAAGCCTCCCCACGTGAGG+TGG - Chr4:43336376-43336395 None:intergenic 70.0%
CCACCTCACGTGGGGAGGCT+TGG + Chr4:43336373-43336392 MsG0480020560.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 43333748 43340375 43333748 ID=MsG0480020560.01;Name=MsG0480020560.01
Chr4 mRNA 43333748 43340375 43333748 ID=MsG0480020560.01.T01;Parent=MsG0480020560.01;Name=MsG0480020560.01.T01;_AED=0.42;_eAED=0.44;_QI=0|0.66|0.7|1|0.77|0.7|10|277|513
Chr4 exon 43333748 43333860 43333748 ID=MsG0480020560.01.T01:exon:4732;Parent=MsG0480020560.01.T01
Chr4 exon 43333964 43334045 43333964 ID=MsG0480020560.01.T01:exon:4733;Parent=MsG0480020560.01.T01
Chr4 exon 43336475 43336677 43336475 ID=MsG0480020560.01.T01:exon:4734;Parent=MsG0480020560.01.T01
Chr4 exon 43336766 43336920 43336766 ID=MsG0480020560.01.T01:exon:4735;Parent=MsG0480020560.01.T01
Chr4 exon 43337637 43337829 43337637 ID=MsG0480020560.01.T01:exon:4736;Parent=MsG0480020560.01.T01
Chr4 exon 43337979 43338140 43337979 ID=MsG0480020560.01.T01:exon:4737;Parent=MsG0480020560.01.T01
Chr4 exon 43338263 43338344 43338263 ID=MsG0480020560.01.T01:exon:4738;Parent=MsG0480020560.01.T01
Chr4 exon 43338879 43339148 43338879 ID=MsG0480020560.01.T01:exon:4739;Parent=MsG0480020560.01.T01
Chr4 exon 43339650 43339777 43339650 ID=MsG0480020560.01.T01:exon:4740;Parent=MsG0480020560.01.T01
Chr4 exon 43339945 43340375 43339945 ID=MsG0480020560.01.T01:exon:4741;Parent=MsG0480020560.01.T01
Chr4 CDS 43333748 43333860 43333748 ID=MsG0480020560.01.T01:cds;Parent=MsG0480020560.01.T01
Chr4 CDS 43333964 43334045 43333964 ID=MsG0480020560.01.T01:cds;Parent=MsG0480020560.01.T01
Chr4 CDS 43336475 43336677 43336475 ID=MsG0480020560.01.T01:cds;Parent=MsG0480020560.01.T01
Chr4 CDS 43336766 43336920 43336766 ID=MsG0480020560.01.T01:cds;Parent=MsG0480020560.01.T01
Chr4 CDS 43337637 43337829 43337637 ID=MsG0480020560.01.T01:cds;Parent=MsG0480020560.01.T01
Chr4 CDS 43337979 43338140 43337979 ID=MsG0480020560.01.T01:cds;Parent=MsG0480020560.01.T01
Chr4 CDS 43338263 43338344 43338263 ID=MsG0480020560.01.T01:cds;Parent=MsG0480020560.01.T01
Chr4 CDS 43338879 43339148 43338879 ID=MsG0480020560.01.T01:cds;Parent=MsG0480020560.01.T01
Chr4 CDS 43339650 43339777 43339650 ID=MsG0480020560.01.T01:cds;Parent=MsG0480020560.01.T01
Chr4 CDS 43339945 43340098 43339945 ID=MsG0480020560.01.T01:cds;Parent=MsG0480020560.01.T01
Chr4 three_prime_UTR 43340099 43340375 43340099 ID=MsG0480020560.01.T01:three_prime_utr;Parent=MsG0480020560.01.T01
Gene Sequence

>MsG0480020560.01.T01

ATGGATCAATTTGGCAGTATTGCTCACTTTTCCCTTGAGCATAAGAATGTTTTGGTACTTTGGTGCTGCTGGCTTCCTTGCAAAAGTAACTCTCTTTCTAAGCTTACTTACTTAGTTCAACCAAATGTGAAGAAACTTTATCTTCTTTTGAGAGCTACGGATGCTGAATCTGTCACTAGAAGACTGCACAATGAGATTTTGCGAAAGGACTTGTTCAAATTGCTGAAGGAAAATCATGGAGCAAAGTTCAATAGTTTTATCTCTGAAAAAGTGACTCTAGTGCCTGGGGACATTTCCCAAGAAAATTTCAATTTGAAGGACTCCAATCTACTTCAAGAGTTATACAATCAAACTGATGTCATTGTGAATTTAGCTGCAACAACTAACTTTGATGAAAGTGTTAATAAATCTCTTAACTCTTATTCTATTGCATGCAGATATGATGTAGCATTGGGTTTAAATACATTTGGAGTCAAGCATGTCTTAAACTTTGCCAAAAATTGTAACCTCAGGTGCTTGTCCACGTATCAACAGGTTTGTATTTCAATACGTTCATACGTATGTGGAGAGAGAGGAGGACTGATAGTAGAGGATCCATACCAACTTGGTGTTTCACTAAATGGAGTGCAAGGACTAGACATTGATGAGGAAAAGAGAGTAGTTGAGGAGAAATTGAACATGCTTCAACAAGAGGGAGCTACTGAAAAGGATACTAAAATTGCCATGAAGGATTTGGGAATGGAAAGAGCAAAATTATATGGTTGGCCAAACACATATGTCTTTACAAAGGCAATGGGAGAAATGCTAGTGGGAACTATGAAGGAAAAATTGTCCATTGTTATTGTGAGACCTACAATCATTACCAGCACTTACAAAGAACCTTTCCCTGGTTGGGTCGAAGGAGTAAGAACCATAGACAGTTTAATTGTTGCATATGGTAAAGGAAAATTAACATGCTTCCTTGCAGACTTAGAGGCAGTTTTTGATGTGATCCCTGCTGATATGGTGGTGAATGCAATGCTAGTGGCCATGGTGAGTCATGCAAATCAACCTTGTGATGATAGCATATATCACGTGGGTTCATCTGTTGGGAATCCAGTGAGATATGAGAGTCTTAGAGACTACAGCTTCAGATATTTTACGGCAAAACCATGTTTTGACAAGGAAGGAAGAGCCATCAAAGTTGGCAAAGTTACCGTATTGGAAAATATGAATAGCTTCCAAAGATACATGTACATTCGTTACTTGCTTCCTTTAAAGGGGCTAGAGCTAGTGAACGCAGCTTTTTGCCGCTATTTTCAAAGTACATATTTTGATATCAGCAGGAAGGTCCATACTGTGATGCGGTTGGTTGAACTTTACAGGCCCTATGTGTTCTTCAATGGCGTATTTGATAATATGAACGCAGAGAAGTTGCAAATAGCAGCAAGACAAAGTGGAGTAGAGATGGATTTATTTTACTTTGACCCAAAAATGATTAACTGGGAGGACTATTTCATGAACATTCATATTCCTGGCATTGTCAAATATTCCTTCAAGTGA

Protein sequence

>MsG0480020560.01.T01

MDQFGSIAHFSLEHKNVLVLWCCWLPCKSNSLSKLTYLVQPNVKKLYLLLRATDAESVTRRLHNEILRKDLFKLLKENHGAKFNSFISEKVTLVPGDISQENFNLKDSNLLQELYNQTDVIVNLAATTNFDESVNKSLNSYSIACRYDVALGLNTFGVKHVLNFAKNCNLRCLSTYQQVCISIRSYVCGERGGLIVEDPYQLGVSLNGVQGLDIDEEKRVVEEKLNMLQQEGATEKDTKIAMKDLGMERAKLYGWPNTYVFTKAMGEMLVGTMKEKLSIVIVRPTIITSTYKEPFPGWVEGVRTIDSLIVAYGKGKLTCFLADLEAVFDVIPADMVVNAMLVAMVSHANQPCDDSIYHVGSSVGNPVRYESLRDYSFRYFTAKPCFDKEGRAIKVGKVTVLENMNSFQRYMYIRYLLPLKGLELVNAAFCRYFQSTYFDISRKVHTVMRLVELYRPYVFFNGVFDNMNAEKLQIAARQSGVEMDLFYFDPKMINWEDYFMNIHIPGIVKYSFK*