AlfalfaGEDB | MsG0480023280.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023280.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023280.01.T01	XP_003630173.1	86.607	112	7	2	1	104	14	125	4.74E-57	182

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023280.01.T01	G7LC90	86.607	112	7	2	1	104	14	125	2.26e-57	182

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048177.01	MsG0480023280.01	0.829308	5.534567e-55	5.644077e-52
MsG0180000019.01	MsG0480023280.01	0.819598	1.067775e-52	8.253598e-50
MsG0180000157.01	MsG0480023280.01	0.805833	1.102641e-49	5.893332e-47
MsG0180000197.01	MsG0480023280.01	0.811423	7.053254e-51	4.364392e-48
MsG0180001043.01	MsG0480023280.01	0.847664	1.002058e-59	1.794114e-56
MsG0180001154.01	MsG0480023280.01	0.811332	7.382270e-51	4.556644e-48
MsG0180001922.01	MsG0480023280.01	0.800572	1.353352e-48	6.323034e-46
MsG0180003088.01	MsG0480023280.01	0.817288	3.563736e-52	2.584608e-49
MsG0180003241.01	MsG0480023280.01	0.869706	2.532741e-66	9.596254e-63
MsG0180003252.01	MsG0480023280.01	0.810884	9.232497e-51	5.632158e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023280.01.T01	MTR_8g092580	86.607	112	7	2	1	104	14	125	5.74e-61	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 15 sgRNAs with CRISPR-Local

Find 16 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGGCAACAACAACATTAG+AGG	0.505052	4:+83156916	MsG0480023280.01.T01:CDS
ACAAAGTGATGATATTGTAA+TGG	0.520018	4:+83156990	MsG0480023280.01.T01:CDS
CAAAGATACAAGAGATCTTT+GGG	0.370184	4:+83157013	MsG0480023280.01.T01:CDS
CGAAGCAACCGACATGAAGA+AGG	0.528099	4:+83156958	MsG0480023280.01.T01:CDS
CGATGCAGCACAAAAGCTTA+TGG	0.339207	4:+83156876	MsG0480023280.01.T01:CDS
CTACACCTATTAATGATACA+AGG	0.485559	4:+83157109	MsG0480023280.01.T01:CDS
CTCACCCTTGTATCATTAAT+AGG	0.341960	4:-83157114	None:intergenic
GATCTTAGTGATGAAGAGAA+GGG	0.605452	4:+83156898	MsG0480023280.01.T01:CDS
GCAAAGATACAAGAGATCTT+TGG	0.301924	4:+83157012	MsG0480023280.01.T01:CDS
GGATCTTAGTGATGAAGAGA+AGG	0.549113	4:+83156897	MsG0480023280.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAGATACAAGAGATCTTT+GGG	+	Chr4:83157013-83157032	MsG0480023280.01.T01:CDS	30.0%
CTACACCTATTAATGATACA+AGG	+	Chr4:83157109-83157128	MsG0480023280.01.T01:CDS	30.0%
TGTATCATTAATAGGTGTAG+TGG	-	Chr4:83157109-83157128	None:intergenic	30.0%
CTCACCCTTGTATCATTAAT+AGG	-	Chr4:83157117-83157136	None:intergenic	35.0%
GATCTTAGTGATGAAGAGAA+GGG	+	Chr4:83156898-83156917	MsG0480023280.01.T01:CDS	35.0%
GCAAAGATACAAGAGATCTT+TGG	+	Chr4:83157012-83157031	MsG0480023280.01.T01:CDS	35.0%
AAGGGCAACAACAACATTAG+AGG	+	Chr4:83156916-83156935	MsG0480023280.01.T01:CDS	40.0%
GGATCTTAGTGATGAAGAGA+AGG	+	Chr4:83156897-83156916	MsG0480023280.01.T01:CDS	40.0%
CGATGCAGCACAAAAGCTTA+TGG	+	Chr4:83156876-83156895	MsG0480023280.01.T01:CDS	45.0%
TTAGAGGCAGAAGAAGCAAG+AGG	+	Chr4:83156932-83156951	MsG0480023280.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	83156829	83157143	83156829	ID=MsG0480023280.01;Name=MsG0480023280.01
Chr4	mRNA	83156829	83157143	83156829	ID=MsG0480023280.01.T01;Parent=MsG0480023280.01;Name=MsG0480023280.01.T01;_AED=0.30;_eAED=0.30;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|104
Chr4	exon	83156829	83157143	83156829	ID=MsG0480023280.01.T01:exon:21504;Parent=MsG0480023280.01.T01
Chr4	CDS	83156829	83157143	83156829	ID=MsG0480023280.01.T01:cds;Parent=MsG0480023280.01.T01

Gene Sequence	>MsG0480023280.01.T01 ATGAAGATTGTGGAATATGATCAACACTTGATTAATGAGTATGATGTCGATGCAGCACAAAAGCTTATGGATCTTAGTGATGAAGAGAAGGGCAACAACAACATTAGAGGCAGAAGAAGCAAGAGGATGCGAAGCAACCGACATGAAGAAGGAAAAAAGCAACAAAGTGATGATATTGTAATGGCAAAGATACAAGAGATCTTTGGGAAAGATGTTGAAGTTTTTCCTATAGTTAAGAAGCAAAAAAGATATCGTTCTCTTGTGAATATTTACATGGCCACTACACCTATTAATGATACAAGGGTGAGTGCATGA
Protein sequence	>MsG0480023280.01.T01 MKIVEYDQHLINEYDVDAAQKLMDLSDEEKGNNNIRGRRSKRMRSNRHEEGKKQQSDDIVMAKIQEIFGKDVEVFPIVKKQKRYRSLVNIYMATTPINDTRVSA*