Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029206.01.T01 | XP_024639724.1 | 96.774 | 93 | 3 | 0 | 7 | 99 | 1012 | 1104 | 8.73E-50 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029206.01.T01 | G7K253 | 96.774 | 93 | 3 | 0 | 7 | 99 | 1014 | 1106 | 6.46e-50 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048462.01 | MsG0580029206.01 | 0.818991 | 1.467819e-52 | 1.115770e-49 |
| MsG0080048618.01 | MsG0580029206.01 | 0.828164 | 1.046949e-54 | 1.032375e-51 |
| MsG0080048683.01 | MsG0580029206.01 | 0.806698 | 7.250769e-50 | 3.961692e-47 |
| MsG0180000145.01 | MsG0580029206.01 | 0.807405 | 5.136346e-50 | 2.858507e-47 |
| MsG0180000335.01 | MsG0580029206.01 | 0.831987 | 1.222007e-55 | 1.347913e-52 |
| MsG0180000470.01 | MsG0580029206.01 | 0.849914 | 2.380549e-60 | 4.584207e-57 |
| MsG0180001063.01 | MsG0580029206.01 | 0.800979 | 1.117570e-48 | 5.276031e-46 |
| MsG0180004295.01 | MsG0580029206.01 | 0.803013 | 4.268386e-49 | 2.121577e-46 |
| MsG0180004389.01 | MsG0580029206.01 | 0.810531 | 1.100688e-50 | 6.650929e-48 |
| MsG0180005050.01 | MsG0580029206.01 | 0.806461 | 8.136244e-50 | 4.418825e-47 |
| MsG0180005185.01 | MsG0580029206.01 | 0.818210 | 2.207465e-52 | 1.641982e-49 |
| MsG0180006261.01 | MsG0580029206.01 | 0.842504 | 2.483799e-58 | 3.773923e-55 |
| MsG0280010698.01 | MsG0580029206.01 | 0.810080 | 1.376746e-50 | 8.221155e-48 |
| MsG0280010722.01 | MsG0580029206.01 | 0.828695 | 7.791885e-55 | 7.802875e-52 |
| MsG0280011052.01 | MsG0580029206.01 | 0.806001 | 1.016674e-49 | 5.457378e-47 |
| MsG0280011086.01 | MsG0580029206.01 | 0.802273 | 6.067186e-49 | 2.959552e-46 |
| MsG0280011109.01 | MsG0580029206.01 | 0.805992 | 1.021179e-49 | 5.480261e-47 |
| MsG0380011609.01 | MsG0580029206.01 | 0.832432 | 9.484022e-56 | 1.059846e-52 |
| MsG0380012460.01 | MsG0580029206.01 | 0.818602 | 1.799499e-52 | 1.353049e-49 |
| MsG0380014537.01 | MsG0580029206.01 | 0.846652 | 1.899089e-59 | 3.291647e-56 |
| MsG0480018465.01 | MsG0580029206.01 | 0.808163 | 3.544085e-50 | 2.011941e-47 |
| MsG0480021215.01 | MsG0580029206.01 | 0.825533 | 4.449997e-54 | 4.067061e-51 |
| MsG0480021489.01 | MsG0580029206.01 | 0.813449 | 2.545486e-51 | 1.662901e-48 |
| MsG0480021558.01 | MsG0580029206.01 | 0.812400 | 4.321438e-51 | 2.745019e-48 |
| MsG0480021870.01 | MsG0580029206.01 | 0.822048 | 2.918053e-53 | 2.415212e-50 |
| MsG0480021925.01 | MsG0580029206.01 | 0.819504 | 1.122088e-52 | 8.650808e-50 |
| MsG0480022068.01 | MsG0580029206.01 | 0.800328 | 1.517521e-48 | 7.046503e-46 |
| MsG0480022467.01 | MsG0580029206.01 | 0.806988 | 6.294415e-50 | 3.465093e-47 |
| MsG0480022551.01 | MsG0580029206.01 | 0.803122 | 4.053342e-49 | 2.020353e-46 |
| MsG0480022985.01 | MsG0580029206.01 | 0.811490 | 6.821768e-51 | 4.228625e-48 |
| MsG0480022986.01 | MsG0580029206.01 | 0.804799 | 1.816424e-49 | 9.453544e-47 |
| MsG0480023600.01 | MsG0580029206.01 | 0.801127 | 1.042680e-48 | 4.940679e-46 |
| MsG0480023670.01 | MsG0580029206.01 | 0.815679 | 8.171894e-52 | 5.671622e-49 |
| MsG0580024552.01 | MsG0580029206.01 | 0.826597 | 2.486200e-54 | 2.342034e-51 |
| MsG0580025816.01 | MsG0580029206.01 | 0.802454 | 5.567128e-49 | 2.728217e-46 |
| MsG0580025987.01 | MsG0580029206.01 | 0.800533 | 1.378083e-48 | 6.432142e-46 |
| MsG0380014948.01 | MsG0580029206.01 | 0.818053 | 2.396082e-52 | 1.774551e-49 |
| MsG0380015555.01 | MsG0580029206.01 | 0.815632 | 8.369591e-52 | 5.801629e-49 |
| MsG0380016407.01 | MsG0580029206.01 | 0.809177 | 2.152219e-50 | 1.254890e-47 |
| MsG0380016910.01 | MsG0580029206.01 | 0.816292 | 5.962184e-52 | 4.208181e-49 |
| MsG0480018236.01 | MsG0580029206.01 | 0.801966 | 7.017658e-49 | 3.396321e-46 |
| MsG0580026726.01 | MsG0580029206.01 | 0.800211 | 1.602823e-48 | 7.420341e-46 |
| MsG0580029206.01 | MsG0580029236.01 | 0.807346 | 5.286193e-50 | 2.937306e-47 |
| MsG0580029206.01 | MsG0580029926.01 | 0.804797 | 1.818305e-49 | 9.462792e-47 |
| MsG0580029206.01 | MsG0680030413.01 | 0.800787 | 1.223571e-48 | 5.747640e-46 |
| MsG0580029206.01 | MsG0680032771.01 | 0.803681 | 3.103488e-49 | 1.569320e-46 |
| MsG0580029206.01 | MsG0680034230.01 | 0.813087 | 3.056187e-51 | 1.976745e-48 |
| MsG0580029206.01 | MsG0780036630.01 | 0.801688 | 8.001379e-49 | 3.845240e-46 |
| MsG0580029206.01 | MsG0780037141.01 | 0.805340 | 1.399848e-49 | 7.387130e-47 |
| MsG0580029206.01 | MsG0780039243.01 | 0.810774 | 9.750709e-51 | 5.930788e-48 |
| MsG0580029206.01 | MsG0780039252.01 | 0.800105 | 1.684376e-48 | 7.776913e-46 |
| MsG0580029206.01 | MsG0780039522.01 | 0.817322 | 3.501740e-52 | 2.542012e-49 |
| MsG0580029206.01 | MsG0780040044.01 | 0.806660 | 7.386366e-50 | 4.031697e-47 |
| MsG0580029206.01 | MsG0780040596.01 | 0.806490 | 8.019476e-50 | 4.358570e-47 |
| MsG0580029206.01 | MsG0780041187.01 | 0.806961 | 6.379941e-50 | 3.509703e-47 |
| MsG0580029206.01 | MsG0780041456.01 | 0.832055 | 1.175558e-55 | 1.299208e-52 |
| MsG0580029206.01 | MsG0780041507.01 | 0.804248 | 2.366664e-49 | 1.214240e-46 |
| MsG0580029206.01 | MsG0880042520.01 | 0.803287 | 3.746854e-49 | 1.875516e-46 |
| MsG0580029206.01 | MsG0880043172.01 | 0.801507 | 8.715219e-49 | 4.169368e-46 |
| MsG0580029206.01 | MsG0880045111.01 | 0.807981 | 3.876010e-50 | 2.189657e-47 |
| MsG0580029206.01 | MsG0880045736.01 | 0.821958 | 3.060629e-53 | 2.526807e-50 |
| MsG0580029206.01 | MsG0880045937.01 | 0.804139 | 2.492766e-49 | 1.275473e-46 |
| MsG0580029206.01 | MsG0880046479.01 | 0.805671 | 1.192857e-49 | 6.348885e-47 |
| MsG0280006491.01 | MsG0580029206.01 | 0.807901 | 4.029749e-50 | 2.271618e-47 |
| MsG0280006770.01 | MsG0580029206.01 | 0.835649 | 1.484249e-56 | 1.826457e-53 |
| MsG0280007955.01 | MsG0580029206.01 | 0.820552 | 6.458658e-53 | 5.126545e-50 |
| MsG0280008112.01 | MsG0580029206.01 | 0.829491 | 4.996819e-55 | 5.121959e-52 |
| MsG0280009383.01 | MsG0580029206.01 | 0.800634 | 1.314383e-48 | 6.150682e-46 |
| MsG0280010182.01 | MsG0580029206.01 | 0.800578 | 1.349448e-48 | 6.305815e-46 |
| MsG0280010184.01 | MsG0580029206.01 | 0.816500 | 5.355520e-52 | 3.801103e-49 |
| MsG0280010233.01 | MsG0580029206.01 | 0.809041 | 2.301566e-50 | 1.337070e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029206.01.T01 | MTR_5g082840 | 96.774 | 93 | 3 | 0 | 7 | 99 | 1014 | 1106 | 1.64e-53 | 179 |
| MsG0580029206.01.T01 | MTR_7g068810 | 54.444 | 90 | 40 | 1 | 11 | 99 | 1031 | 1120 | 3.21e-28 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029206.01.T01 | AT5G05570 | 54.118 | 85 | 39 | 0 | 15 | 99 | 1040 | 1124 | 1.14e-27 | 105 |
| MsG0580029206.01.T01 | AT5G05570 | 54.118 | 85 | 39 | 0 | 15 | 99 | 1015 | 1099 | 1.79e-27 | 104 |
Find 30 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAACAACTGAAGAAATTA+AGG | 0.301995 | 5:-93704601 | MsG0580029206.01.T01:CDS |
| TGTAAAGATAAGTTGGGATT+TGG | 0.311276 | 5:-93703539 | MsG0580029206.01.T01:three_prime_UTR |
| GACGAATGGAAAATCGTAAA+TGG | 0.325409 | 5:-93703830 | MsG0580029206.01.T01:CDS |
| TCTGATTCATTTGCTTCTTT+AGG | 0.354321 | 5:-93703697 | MsG0580029206.01.T01:three_prime_UTR |
| TCTTCAGTTGTTCTAGCTCT+TGG | 0.355041 | 5:+93704609 | None:intergenic |
| GACGCAATGTAAAGATAAGT+TGG | 0.389597 | 5:-93703546 | MsG0580029206.01.T01:three_prime_UTR |
| GACAGAATTTCAACTTCTAA+AGG | 0.397500 | 5:+93703753 | None:intergenic |
| AGAAATATTACTGATATTCT+CGG | 0.400395 | 5:+93703488 | None:intergenic |
| GAATATCAGTAATATTTCTA+AGG | 0.409740 | 5:-93703484 | MsG0580029206.01.T01:three_prime_UTR |
| AAGGCTAAATATAGAAAGAC+TGG | 0.413685 | 5:-93704582 | MsG0580029206.01.T01:CDS |
| CGACGGCAGCTGCACTTGCA+AGG | 0.452163 | 5:-93704476 | MsG0580029206.01.T01:CDS |
| TCTAGCAAGTTCACTGGCCA+TGG | 0.474330 | 5:+93703851 | None:intergenic |
| ACGCAATGTAAAGATAAGTT+GGG | 0.475958 | 5:-93703545 | MsG0580029206.01.T01:three_prime_UTR |
| ATACTGAAGAGTTGCAGAAT+GGG | 0.482169 | 5:-93703890 | MsG0580029206.01.T01:CDS |
| TTTGCATGCGCAACTTATTG+AGG | 0.485528 | 5:+93703582 | None:intergenic |
| CATTCGTCTAGCAAGTTCAC+TGG | 0.494472 | 5:+93703845 | None:intergenic |
| CATACTGAAGAGTTGCAGAA+TGG | 0.500754 | 5:-93703891 | MsG0580029206.01.T01:CDS |
| AAATCACTAATAAATTGCAT+AGG | 0.541156 | 5:-93703512 | MsG0580029206.01.T01:three_prime_UTR |
| GACGGCAGCTGCACTTGCAA+GGG | 0.562703 | 5:-93704475 | MsG0580029206.01.T01:CDS |
| TGCAAGTGCAGCTGCCGTCG+AGG | 0.566225 | 5:+93704479 | None:intergenic |
| TCAATAAGTTGCGCATGCAA+AGG | 0.579694 | 5:-93703580 | MsG0580029206.01.T01:three_prime_UTR |
| AGGCTAAATATAGAAAGACT+GGG | 0.587018 | 5:-93704581 | MsG0580029206.01.T01:CDS |
| CTTGCTTCAGGATGCCTCGA+CGG | 0.619387 | 5:-93704493 | MsG0580029206.01.T01:intron |
| CAGTGAACTTGCTAGACGAA+TGG | 0.621337 | 5:-93703844 | MsG0580029206.01.T01:CDS |
| TACTGAAGAGTTGCAGAATG+GGG | 0.635999 | 5:-93703889 | MsG0580029206.01.T01:CDS |
| CAACTTCTAAAGGATTGCAG+CGG | 0.646615 | 5:+93703763 | None:intergenic |
| AGACAGACAGAAGTTACTTG+AGG | 0.652763 | 5:-93704652 | MsG0580029206.01.T01:CDS |
| GAATGGAAAATCGTAAATGG+TGG | 0.667397 | 5:-93703827 | MsG0580029206.01.T01:CDS |
| GGCTAAATATAGAAAGACTG+GGG | 0.696264 | 5:-93704580 | MsG0580029206.01.T01:intron |
| CAAGGGATAAGCTTGTAGAG+CGG | 0.731093 | 5:-93704458 | MsG0580029206.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATTCTTTATTAGA+AGG | + | Chr5:93704140-93704159 | None:intergenic | 10.0% |
| !! | CTTGATAAATCAATAATTTA+TGG | + | Chr5:93703940-93703959 | None:intergenic | 15.0% |
| !! | GAATAATAATTATTGAAACT+TGG | - | Chr5:93704149-93704168 | MsG0580029206.01.T01:intron | 15.0% |
| !! | TTTCATATTCATTAAATAGT+AGG | + | Chr5:93703793-93703812 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTAATAGAGATG+TGG | + | Chr5:93703983-93704002 | None:intergenic | 15.0% |
| !! | AAATCACTAATAAATTGCAT+AGG | - | Chr5:93704629-93704648 | MsG0580029206.01.T01:CDS | 20.0% |
| !! | AGAAATATTACTGATATTCT+CGG | + | Chr5:93704656-93704675 | None:intergenic | 20.0% |
| !! | GAAACCTAATAAACAAAATT+TGG | + | Chr5:93704185-93704204 | None:intergenic | 20.0% |
| !!! | ACATAGATTTTTCATGTATA+AGG | - | Chr5:93703859-93703878 | MsG0580029206.01.T01:CDS | 20.0% |
| !!! | GAATATCAGTAATATTTCTA+AGG | - | Chr5:93704657-93704676 | MsG0580029206.01.T01:CDS | 20.0% |
| !!! | TTCTCCAAATTTTGTTTATT+AGG | - | Chr5:93704178-93704197 | MsG0580029206.01.T01:intron | 20.0% |
| ! | AAAAATGGAGATTTGTCTTT+CGG | + | Chr5:93703826-93703845 | None:intergenic | 25.0% |
| ! | AATAATTATTGAAACTTGGC+TGG | - | Chr5:93704153-93704172 | MsG0580029206.01.T01:intron | 25.0% |
| ! | AATAATTTATGGACTTCCAT+TGG | + | Chr5:93703929-93703948 | None:intergenic | 25.0% |
| ! | GTCTAGAAACTTCTTAAAAA+TGG | + | Chr5:93703841-93703860 | None:intergenic | 25.0% |
| ! | TAGAACAACTGAAGAAATTA+AGG | - | Chr5:93703540-93703559 | MsG0580029206.01.T01:three_prime_UTR | 25.0% |
| !! | ACGAGAACTTTTATCATTAA+AGG | + | Chr5:93704018-93704037 | None:intergenic | 25.0% |
| !! | CGAGAACTTTTATCATTAAA+GGG | + | Chr5:93704017-93704036 | None:intergenic | 25.0% |
| !! | GTTCCTTTTTATTATAACTG+AGG | - | Chr5:93703902-93703921 | MsG0580029206.01.T01:CDS | 25.0% |
| !! | TTTTTCATGTATAAGGTAAG+TGG | - | Chr5:93703866-93703885 | MsG0580029206.01.T01:CDS | 25.0% |
| AAGGCTAAATATAGAAAGAC+TGG | - | Chr5:93703559-93703578 | MsG0580029206.01.T01:three_prime_UTR | 30.0% | |
| AATAGAATAACAGTCTAACC+TGG | + | Chr5:93703720-93703739 | None:intergenic | 30.0% | |
| ACGCAATGTAAAGATAAGTT+GGG | - | Chr5:93704596-93704615 | MsG0580029206.01.T01:CDS | 30.0% | |
| AGGCTAAATATAGAAAGACT+GGG | - | Chr5:93703560-93703579 | MsG0580029206.01.T01:three_prime_UTR | 30.0% | |
| GACAGAATTTCAACTTCTAA+AGG | + | Chr5:93704391-93704410 | None:intergenic | 30.0% | |
| GGACCTCAGTTATAATAAAA+AGG | + | Chr5:93703908-93703927 | None:intergenic | 30.0% | |
| TATTGTGGAAGGATAAGATT+CGG | + | Chr5:93703757-93703776 | None:intergenic | 30.0% | |
| TCATTAAATAGTAGGAGATG+AGG | + | Chr5:93703785-93703804 | None:intergenic | 30.0% | |
| TCTGATTCATTTGCTTCTTT+AGG | - | Chr5:93704444-93704463 | MsG0580029206.01.T01:CDS | 30.0% | |
| TTATTATAACTGAGGTCCAA+TGG | - | Chr5:93703910-93703929 | MsG0580029206.01.T01:intron | 30.0% | |
| ! | ACTACTTTGATTTCACAAAG+TGG | + | Chr5:93704111-93704130 | None:intergenic | 30.0% |
| ! | CTACTTTGATTTCACAAAGT+GGG | + | Chr5:93704110-93704129 | None:intergenic | 30.0% |
| ! | TGTAAAGATAAGTTGGGATT+TGG | - | Chr5:93704602-93704621 | MsG0580029206.01.T01:CDS | 30.0% |
| !!! | CTGGTCAATTTTTGGTTATT+TGG | + | Chr5:93704083-93704102 | None:intergenic | 30.0% |
| !!! | TTAGCCTCACTTGTTTTTAA+AGG | - | Chr5:93704417-93704436 | MsG0580029206.01.T01:intron | 30.0% |
| AAGATTCGGGTAAAGAAGAA+TGG | + | Chr5:93703743-93703762 | None:intergenic | 35.0% | |
| ATACTGAAGAGTTGCAGAAT+GGG | - | Chr5:93704251-93704270 | MsG0580029206.01.T01:intron | 35.0% | |
| ATTGTGGAAGGATAAGATTC+GGG | + | Chr5:93703756-93703775 | None:intergenic | 35.0% | |
| GAATGGAAAATCGTAAATGG+TGG | - | Chr5:93704314-93704333 | MsG0580029206.01.T01:intron | 35.0% | |
| GACGAATGGAAAATCGTAAA+TGG | - | Chr5:93704311-93704330 | MsG0580029206.01.T01:intron | 35.0% | |
| GACGCAATGTAAAGATAAGT+TGG | - | Chr5:93704595-93704614 | MsG0580029206.01.T01:CDS | 35.0% | |
| GGCTAAATATAGAAAGACTG+GGG | - | Chr5:93703561-93703580 | MsG0580029206.01.T01:three_prime_UTR | 35.0% | |
| TCATGTATAAGGTAAGTGGA+TGG | - | Chr5:93703870-93703889 | MsG0580029206.01.T01:CDS | 35.0% | |
| ! | ATCATTAAAGGGTGCAAAAG+TGG | + | Chr5:93704006-93704025 | None:intergenic | 35.0% |
| ! | TGGGTTAACTGGTCAATTTT+TGG | + | Chr5:93704091-93704110 | None:intergenic | 35.0% |
| !! | ATTTCACAAAGTGGGTTAAC+TGG | + | Chr5:93704102-93704121 | None:intergenic | 35.0% |
| AGACAGACAGAAGTTACTTG+AGG | - | Chr5:93703489-93703508 | MsG0580029206.01.T01:three_prime_UTR | 40.0% | |
| ATGAGGCTAGATATTGTGGA+AGG | + | Chr5:93703768-93703787 | None:intergenic | 40.0% | |
| CATACTGAAGAGTTGCAGAA+TGG | - | Chr5:93704250-93704269 | MsG0580029206.01.T01:intron | 40.0% | |
| GATTTGTCTTTCGGTGATTC+AGG | + | Chr5:93703817-93703836 | None:intergenic | 40.0% | |
| TACTGAAGAGTTGCAGAATG+GGG | - | Chr5:93704252-93704271 | MsG0580029206.01.T01:intron | 40.0% | |
| TCAATAAGTTGCGCATGCAA+AGG | - | Chr5:93704561-93704580 | MsG0580029206.01.T01:intron | 40.0% | |
| TTGACCTAATCACTTGCTTC+AGG | - | Chr5:93703636-93703655 | MsG0580029206.01.T01:three_prime_UTR | 40.0% | |
| TTTGCATGCGCAACTTATTG+AGG | + | Chr5:93704562-93704581 | None:intergenic | 40.0% | |
| ! | CAACTTCTAAAGGATTGCAG+CGG | + | Chr5:93704381-93704400 | None:intergenic | 40.0% |
| ! | GCTGCCTTTAAAAACAAGTG+AGG | + | Chr5:93704424-93704443 | None:intergenic | 40.0% |
| !! | TCTTCAGTTGTTCTAGCTCT+TGG | + | Chr5:93703535-93703554 | None:intergenic | 40.0% |
| !!! | TTTCTTCTGCTTTTTCAGCG+AGG | + | Chr5:93703468-93703487 | None:intergenic | 40.0% |
| CAAGGGATAAGCTTGTAGAG+CGG | - | Chr5:93703683-93703702 | MsG0580029206.01.T01:three_prime_UTR | 45.0% | |
| CAGTATGATCGTTGAGCATC+TGG | + | Chr5:93704237-93704256 | None:intergenic | 45.0% | |
| CATTCGTCTAGCAAGTTCAC+TGG | + | Chr5:93704299-93704318 | None:intergenic | 45.0% | |
| GCATCCTGAAGCAAGTGATT+AGG | + | Chr5:93703643-93703662 | None:intergenic | 45.0% | |
| GGAGATGAGGCTAGATATTG+TGG | + | Chr5:93703772-93703791 | None:intergenic | 45.0% | |
| GTAAACATGACGAGCAGAGA+TGG | + | Chr5:93704215-93704234 | None:intergenic | 45.0% | |
| ! | GGCACAAGATTTTGCTTCCA+TGG | - | Chr5:93704273-93704292 | MsG0580029206.01.T01:intron | 45.0% |
| !! | CAGTGAACTTGCTAGACGAA+TGG | - | Chr5:93704297-93704316 | MsG0580029206.01.T01:intron | 45.0% |
| AGAGCGGCAAGAAAAACTCC+AGG | - | Chr5:93703699-93703718 | MsG0580029206.01.T01:three_prime_UTR | 50.0% | |
| GACGAGCAGAGATGGTTAGA+TGG | + | Chr5:93704207-93704226 | None:intergenic | 50.0% | |
| TCTAGCAAGTTCACTGGCCA+TGG | + | Chr5:93704293-93704312 | None:intergenic | 50.0% | |
| !!! | AGCTCTTGGTTTTGCGTCAG+TGG | + | Chr5:93703521-93703540 | None:intergenic | 50.0% |
| !!! | TCTTGGTTTTGCGTCAGTGG+AGG | + | Chr5:93703518-93703537 | None:intergenic | 50.0% |
| CTTGCTTCAGGATGCCTCGA+CGG | - | Chr5:93703648-93703667 | MsG0580029206.01.T01:three_prime_UTR | 55.0% | |
| GACGGCAGCTGCACTTGCAA+GGG | - | Chr5:93703666-93703685 | MsG0580029206.01.T01:three_prime_UTR | 60.0% | |
| CGACGGCAGCTGCACTTGCA+AGG | - | Chr5:93703665-93703684 | MsG0580029206.01.T01:three_prime_UTR | 65.0% | |
| TGCAAGTGCAGCTGCCGTCG+AGG | + | Chr5:93703665-93703684 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 93703454 | 93704709 | 93703454 | ID=MsG0580029206.01;Name=MsG0580029206.01 |
| Chr5 | mRNA | 93703454 | 93704709 | 93703454 | ID=MsG0580029206.01.T01;Parent=MsG0580029206.01;Name=MsG0580029206.01.T01;_AED=0.48;_eAED=0.49;_QI=0|1|0.66|1|1|1|3|364|99 |
| Chr5 | exon | 93703454 | 93703925 | 93703454 | ID=MsG0580029206.01.T01:exon:49695;Parent=MsG0580029206.01.T01 |
| Chr5 | exon | 93704443 | 93704505 | 93704443 | ID=MsG0580029206.01.T01:exon:49694;Parent=MsG0580029206.01.T01 |
| Chr5 | exon | 93704581 | 93704709 | 93704581 | ID=MsG0580029206.01.T01:exon:49693;Parent=MsG0580029206.01.T01 |
| Chr5 | CDS | 93704581 | 93704709 | 93704581 | ID=MsG0580029206.01.T01:cds;Parent=MsG0580029206.01.T01 |
| Chr5 | CDS | 93704443 | 93704505 | 93704443 | ID=MsG0580029206.01.T01:cds;Parent=MsG0580029206.01.T01 |
| Chr5 | CDS | 93703818 | 93703925 | 93703818 | ID=MsG0580029206.01.T01:cds;Parent=MsG0580029206.01.T01 |
| Chr5 | three_prime_UTR | 93703454 | 93703817 | 93703454 | ID=MsG0580029206.01.T01:three_prime_utr;Parent=MsG0580029206.01.T01 |
| Gene Sequence |
| Protein sequence |
