Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180006024.01.T01 | KEH44316.1 | 95.455 | 110 | 5 | 0 | 1 | 110 | 142 | 251 | 1.00E-71 | 224 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180006024.01.T01 | A0A072VRL9 | 95.455 | 110 | 5 | 0 | 1 | 110 | 142 | 251 | 4.78e-72 | 224 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048291.01 | MsG0180006024.01 | 0.818181 | 2.241572e-52 | 1.666041e-49 |
MsG0080048462.01 | MsG0180006024.01 | 0.811349 | 7.318797e-51 | 4.519493e-48 |
MsG0080048856.01 | MsG0180006024.01 | 0.850567 | 1.562372e-60 | 3.073207e-57 |
MsG0180000139.01 | MsG0180006024.01 | 0.845639 | 3.582209e-59 | 6.008642e-56 |
MsG0180000334.01 | MsG0180006024.01 | 0.831527 | 1.586787e-55 | 1.726585e-52 |
MsG0180000836.01 | MsG0180006024.01 | 0.802365 | 5.806930e-49 | 2.839410e-46 |
MsG0180001892.01 | MsG0180006024.01 | 0.810985 | 8.779553e-51 | 5.370709e-48 |
MsG0180002895.01 | MsG0180006024.01 | 0.815204 | 1.042097e-51 | 7.138380e-49 |
MsG0180003094.01 | MsG0180006024.01 | 0.831985 | 1.223518e-55 | 1.349484e-52 |
MsG0180003403.01 | MsG0180006024.01 | 0.824355 | 8.442827e-54 | 7.460128e-51 |
MsG0180003548.01 | MsG0180006024.01 | 0.817804 | 2.726907e-52 | 2.005974e-49 |
MsG0180003572.01 | MsG0180006024.01 | 0.812937 | 3.296604e-51 | 2.123710e-48 |
MsG0180003786.01 | MsG0180006024.01 | 0.811936 | 5.455336e-51 | 3.421592e-48 |
MsG0180003920.01 | MsG0180006024.01 | 0.804088 | 2.554946e-49 | 1.305566e-46 |
MsG0180003943.01 | MsG0180006024.01 | 0.805520 | 1.283218e-49 | 6.802964e-47 |
MsG0180003951.01 | MsG0180006024.01 | 0.800290 | 1.544792e-48 | 7.166156e-46 |
MsG0180004099.01 | MsG0180006024.01 | 0.858174 | 9.871316e-63 | 2.497151e-59 |
MsG0180004152.01 | MsG0180006024.01 | 0.849809 | 2.547923e-60 | 4.888793e-57 |
MsG0180004389.01 | MsG0180006024.01 | 0.827604 | 1.427126e-54 | 1.384286e-51 |
MsG0180004481.01 | MsG0180006024.01 | 0.855591 | 5.691979e-62 | 1.320801e-58 |
MsG0180004482.01 | MsG0180006024.01 | 0.844972 | 5.428755e-59 | 8.913565e-56 |
MsG0180004509.01 | MsG0180006024.01 | 0.853810 | 1.867660e-61 | 4.085930e-58 |
MsG0180004754.01 | MsG0180006024.01 | 0.833908 | 4.069327e-56 | 4.753522e-53 |
MsG0180004802.01 | MsG0180006024.01 | 0.803937 | 2.746977e-49 | 1.398327e-46 |
MsG0180004854.01 | MsG0180006024.01 | 0.808683 | 2.745205e-50 | 1.579656e-47 |
MsG0180004928.01 | MsG0180006024.01 | 0.815201 | 1.043860e-51 | 7.149792e-49 |
MsG0180005049.01 | MsG0180006024.01 | 0.826132 | 3.208399e-54 | 2.982792e-51 |
MsG0180005153.01 | MsG0180006024.01 | 0.803542 | 3.316641e-49 | 1.671223e-46 |
MsG0180005575.01 | MsG0180006024.01 | 0.852392 | 4.756734e-61 | 9.924864e-58 |
MsG0180005962.01 | MsG0180006024.01 | -0.802380 | 5.766507e-49 | 2.820732e-46 |
MsG0180005993.01 | MsG0180006024.01 | 0.815054 | 1.125278e-51 | 7.676873e-49 |
MsG0180006013.01 | MsG0180006024.01 | 0.803552 | 3.301068e-49 | 1.663806e-46 |
MsG0180006024.01 | MsG0180006155.01 | 0.818147 | 2.281398e-52 | 1.694013e-49 |
MsG0180006024.01 | MsG0280006299.01 | 0.804592 | 2.006281e-49 | 1.038554e-46 |
MsG0180006024.01 | MsG0280006405.01 | 0.813971 | 1.953982e-51 | 1.294576e-48 |
MsG0180006024.01 | MsG0280006422.01 | 0.803022 | 4.251061e-49 | 2.113439e-46 |
MsG0180006024.01 | MsG0280006910.01 | 0.828912 | 6.904698e-55 | 6.957862e-52 |
MsG0180006024.01 | MsG0280007452.01 | 0.806803 | 6.888628e-50 | 3.774111e-47 |
MsG0180006024.01 | MsG0280007506.01 | 0.835527 | 1.593583e-56 | 1.953802e-53 |
MsG0180006024.01 | MsG0280007527.01 | 0.835245 | 1.877113e-56 | 2.282393e-53 |
MsG0180006024.01 | MsG0280007955.01 | 0.844069 | 9.495499e-59 | 1.515432e-55 |
MsG0180006024.01 | MsG0280008378.01 | 0.817005 | 4.126255e-52 | 2.969714e-49 |
MsG0180006024.01 | MsG0280008457.01 | 0.827781 | 1.294398e-54 | 1.262049e-51 |
MsG0180006024.01 | MsG0280008614.01 | 0.802235 | 6.176063e-49 | 3.009754e-46 |
MsG0180006024.01 | MsG0280008615.01 | 0.826299 | 2.928275e-54 | 2.735267e-51 |
MsG0180006024.01 | MsG0280008696.01 | 0.803721 | 3.045304e-49 | 1.541467e-46 |
MsG0180006024.01 | MsG0280008909.01 | 0.858423 | 8.323272e-63 | 2.123231e-59 |
MsG0180006024.01 | MsG0280009794.01 | 0.834580 | 2.760267e-56 | 3.289835e-53 |
MsG0180006024.01 | MsG0280010176.01 | 0.809206 | 2.122132e-50 | 1.238323e-47 |
MsG0180006024.01 | MsG0280010233.01 | 0.826957 | 2.040022e-54 | 1.941969e-51 |
MsG0180006024.01 | MsG0280010489.01 | 0.806580 | 7.676470e-50 | 4.181701e-47 |
MsG0180006024.01 | MsG0280010491.01 | 0.843720 | 1.177599e-58 | 1.858855e-55 |
MsG0180006024.01 | MsG0280010778.01 | 0.806790 | 6.931132e-50 | 3.796131e-47 |
MsG0180006024.01 | MsG0280010788.01 | 0.852002 | 6.142014e-61 | 1.265521e-57 |
MsG0180006024.01 | MsG0280010907.01 | 0.808934 | 2.426253e-50 | 1.405399e-47 |
MsG0180006024.01 | MsG0280010980.01 | 0.803947 | 2.733230e-49 | 1.391696e-46 |
MsG0180006024.01 | MsG0280011003.01 | 0.809334 | 1.991993e-50 | 1.166330e-47 |
MsG0180006024.01 | MsG0280011013.01 | 0.810997 | 8.725875e-51 | 5.339515e-48 |
MsG0180006024.01 | MsG0280011014.01 | 0.841641 | 4.200606e-58 | 6.211297e-55 |
MsG0180006024.01 | MsG0280011065.01 | 0.827867 | 1.234230e-54 | 1.206520e-51 |
MsG0180006024.01 | MsG0280011156.01 | 0.810279 | 1.247220e-50 | 7.486456e-48 |
MsG0180006024.01 | MsG0280011258.01 | 0.816755 | 4.696464e-52 | 3.356809e-49 |
MsG0180006024.01 | MsG0280011282.01 | 0.801955 | 7.052080e-49 | 3.412108e-46 |
MsG0180006024.01 | MsG0280011329.01 | 0.827903 | 1.209701e-54 | 1.183747e-51 |
MsG0180006024.01 | MsG0280011339.01 | 0.824707 | 6.977157e-54 | 6.228998e-51 |
MsG0180006024.01 | MsG0280011388.01 | 0.819889 | 9.160664e-53 | 7.138878e-50 |
MsG0180006024.01 | MsG0380011496.01 | 0.803307 | 3.710672e-49 | 1.858381e-46 |
MsG0180006024.01 | MsG0380011501.01 | 0.819794 | 9.633015e-53 | 7.487410e-50 |
MsG0180006024.01 | MsG0380012471.01 | 0.836081 | 1.153001e-56 | 1.437609e-53 |
MsG0180006024.01 | MsG0380013475.01 | 0.822805 | 1.945959e-53 | 1.645855e-50 |
MsG0180006024.01 | MsG0380014225.01 | -0.811261 | 7.646682e-51 | 4.711295e-48 |
MsG0180006024.01 | MsG0380014495.01 | 0.801725 | 7.863418e-49 | 3.782464e-46 |
MsG0180006024.01 | MsG0380014537.01 | 0.807677 | 4.497616e-50 | 2.520667e-47 |
MsG0180006024.01 | MsG0380014703.01 | 0.810743 | 9.901502e-51 | 6.017516e-48 |
MsG0180006024.01 | MsG0380015332.01 | 0.819871 | 9.250665e-53 | 7.205158e-50 |
MsG0180006024.01 | MsG0380015555.01 | 0.808913 | 2.452203e-50 | 1.419611e-47 |
MsG0180006024.01 | MsG0380015786.01 | 0.805034 | 1.622243e-49 | 8.493723e-47 |
MsG0180006024.01 | MsG0380015805.01 | 0.819791 | 9.648248e-53 | 7.498539e-50 |
MsG0180006024.01 | MsG0380015944.01 | 0.835936 | 1.254896e-56 | 1.557606e-53 |
MsG0180006024.01 | MsG0380016067.01 | 0.806789 | 6.935453e-50 | 3.798335e-47 |
MsG0180006024.01 | MsG0380016517.01 | 0.803302 | 3.720438e-49 | 1.862980e-46 |
MsG0180006024.01 | MsG0380016860.01 | 0.820518 | 6.574448e-53 | 5.213347e-50 |
MsG0180006024.01 | MsG0380016923.01 | 0.825028 | 5.859575e-54 | 5.279369e-51 |
MsG0180006024.01 | MsG0380016970.01 | 0.822719 | 2.037733e-53 | 1.719340e-50 |
MsG0180006024.01 | MsG0480018163.01 | 0.826091 | 3.280228e-54 | 3.045934e-51 |
MsG0180006024.01 | MsG0480018313.01 | 0.824150 | 9.432259e-54 | 8.286607e-51 |
MsG0180006024.01 | MsG0480018477.01 | 0.822021 | 2.959637e-53 | 2.447782e-50 |
MsG0180006024.01 | MsG0480018894.01 | 0.848082 | 7.686744e-60 | 1.394268e-56 |
MsG0180006024.01 | MsG0480019276.01 | 0.848393 | 6.309082e-60 | 1.156122e-56 |
MsG0180006024.01 | MsG0480020447.01 | 0.811943 | 5.435749e-51 | 3.410128e-48 |
MsG0180006024.01 | MsG0480020780.01 | 0.853476 | 2.329794e-61 | 5.040475e-58 |
MsG0180006024.01 | MsG0480020879.01 | 0.824083 | 9.781038e-54 | 8.576365e-51 |
MsG0180006024.01 | MsG0480021056.01 | 0.871414 | 6.960648e-67 | 2.805751e-63 |
MsG0180006024.01 | MsG0480021332.01 | 0.801111 | 1.050527e-48 | 4.975830e-46 |
MsG0180006024.01 | MsG0480021451.01 | 0.823153 | 1.614939e-53 | 1.379388e-50 |
MsG0180006024.01 | MsG0480021452.01 | 0.839896 | 1.204205e-57 | 1.686648e-54 |
MsG0180006024.01 | MsG0480021453.01 | 0.814824 | 1.265474e-51 | 8.579989e-49 |
MsG0180006024.01 | MsG0480021464.01 | 0.809542 | 1.797295e-50 | 1.058177e-47 |
MsG0180006024.01 | MsG0480021465.01 | 0.838261 | 3.193827e-57 | 4.254345e-54 |
MsG0180006024.01 | MsG0480022054.01 | 0.862652 | 4.354545e-64 | 1.284752e-60 |
MsG0180006024.01 | MsG0480022164.01 | 0.834742 | 2.513182e-56 | 3.009349e-53 |
MsG0180006024.01 | MsG0480022696.01 | 0.831852 | 1.319484e-55 | 1.449734e-52 |
MsG0180006024.01 | MsG0480023600.01 | 0.818898 | 1.541323e-52 | 1.168568e-49 |
MsG0180006024.01 | MsG0580024197.01 | 0.832591 | 8.660858e-56 | 9.724623e-53 |
MsG0180006024.01 | MsG0580024506.01 | 0.800723 | 1.260574e-48 | 5.912084e-46 |
MsG0180006024.01 | MsG0580025090.01 | 0.804072 | 2.574769e-49 | 1.315181e-46 |
MsG0180006024.01 | MsG0580025409.01 | 0.840690 | 7.469031e-58 | 1.072266e-54 |
MsG0180006024.01 | MsG0580025587.01 | 0.846359 | 2.282690e-59 | 3.918845e-56 |
MsG0180006024.01 | MsG0580026059.01 | 0.832529 | 8.973550e-56 | 1.005705e-52 |
MsG0180006024.01 | MsG0580026086.01 | 0.817553 | 3.106143e-52 | 2.269206e-49 |
MsG0180006024.01 | MsG0580026309.01 | 0.828638 | 8.041603e-55 | 8.039681e-52 |
MsG0180006024.01 | MsG0580026718.01 | 0.800921 | 1.148889e-48 | 5.415654e-46 |
MsG0180006024.01 | MsG0580027431.01 | 0.818012 | 2.447270e-52 | 1.810471e-49 |
MsG0180006024.01 | MsG0580027616.01 | 0.825588 | 4.319623e-54 | 3.954083e-51 |
MsG0180006024.01 | MsG0580027650.01 | 0.827963 | 1.170091e-54 | 1.147092e-51 |
MsG0180006024.01 | MsG0580027925.01 | 0.832841 | 7.510063e-56 | 8.495201e-53 |
MsG0180006024.01 | MsG0580028436.01 | 0.808141 | 3.584019e-50 | 2.033325e-47 |
MsG0180006024.01 | MsG0580029127.01 | 0.803067 | 4.160759e-49 | 2.070924e-46 |
MsG0180006024.01 | MsG0580029236.01 | 0.809759 | 1.614040e-50 | 9.558373e-48 |
MsG0180006024.01 | MsG0580029640.01 | 0.821746 | 3.427404e-53 | 2.812517e-50 |
MsG0180006024.01 | MsG0580029729.01 | 0.816455 | 5.481725e-52 | 3.885858e-49 |
MsG0180006024.01 | MsG0580029825.01 | 0.807391 | 5.170956e-50 | 2.876737e-47 |
MsG0180006024.01 | MsG0680030447.01 | 0.835854 | 1.316970e-56 | 1.630600e-53 |
MsG0180006024.01 | MsG0680030882.01 | 0.804364 | 2.238526e-49 | 1.152001e-46 |
MsG0180006024.01 | MsG0680031214.01 | 0.805457 | 1.322772e-49 | 7.001734e-47 |
MsG0180006024.01 | MsG0680031264.01 | 0.812909 | 3.344254e-51 | 2.152830e-48 |
MsG0180006024.01 | MsG0680031505.01 | 0.811858 | 5.673119e-51 | 3.550828e-48 |
MsG0180006024.01 | MsG0680031506.01 | 0.814394 | 1.575339e-51 | 1.055858e-48 |
MsG0180006024.01 | MsG0680031507.01 | 0.817835 | 2.683349e-52 | 1.975607e-49 |
MsG0180006024.01 | MsG0680031617.01 | 0.815238 | 1.024260e-51 | 7.022636e-49 |
MsG0180006024.01 | MsG0680031621.01 | 0.833208 | 6.086394e-56 | 6.961403e-53 |
MsG0180006024.01 | MsG0680031628.01 | 0.850638 | 1.491670e-60 | 2.941173e-57 |
MsG0180006024.01 | MsG0680034234.01 | 0.802171 | 6.368093e-49 | 3.098205e-46 |
MsG0180006024.01 | MsG0680034853.01 | 0.817406 | 3.352906e-52 | 2.439677e-49 |
MsG0180006024.01 | MsG0680035346.01 | 0.820893 | 5.390555e-53 | 4.319745e-50 |
MsG0180006024.01 | MsG0680035475.01 | 0.813897 | 2.028018e-51 | 1.340998e-48 |
MsG0180006024.01 | MsG0680035888.01 | 0.820798 | 5.669781e-53 | 4.531263e-50 |
MsG0180006024.01 | MsG0780035979.01 | 0.814770 | 1.300523e-51 | 8.804438e-49 |
MsG0180006024.01 | MsG0780036078.01 | 0.806269 | 8.928659e-50 | 4.825604e-47 |
MsG0180006024.01 | MsG0780036477.01 | 0.808314 | 3.292315e-50 | 1.876379e-47 |
MsG0180006024.01 | MsG0780036719.01 | 0.822920 | 1.830117e-53 | 1.552946e-50 |
MsG0180006024.01 | MsG0780036752.01 | 0.803002 | 4.291491e-49 | 2.132475e-46 |
MsG0180006024.01 | MsG0780036815.01 | 0.826286 | 2.948668e-54 | 2.753385e-51 |
MsG0180006024.01 | MsG0780037054.01 | 0.831378 | 1.727318e-55 | 1.871139e-52 |
MsG0180006024.01 | MsG0780037141.01 | 0.820936 | 5.270105e-53 | 4.228276e-50 |
MsG0180006024.01 | MsG0780037240.01 | 0.863085 | 3.202259e-64 | 9.590194e-61 |
MsG0180006024.01 | MsG0780038400.01 | 0.808621 | 2.831272e-50 | 1.626479e-47 |
MsG0180006024.01 | MsG0780038424.01 | 0.825478 | 4.586026e-54 | 4.184723e-51 |
MsG0180006024.01 | MsG0780038603.01 | 0.816091 | 6.610928e-52 | 4.640254e-49 |
MsG0180006024.01 | MsG0780039137.01 | 0.828065 | 1.105765e-54 | 1.087240e-51 |
MsG0180006024.01 | MsG0780039170.01 | 0.833325 | 5.689823e-56 | 6.531082e-53 |
MsG0180006024.01 | MsG0780039243.01 | 0.813754 | 2.180394e-51 | 1.436151e-48 |
MsG0180006024.01 | MsG0780039423.01 | 0.815608 | 8.473808e-52 | 5.869932e-49 |
MsG0180006024.01 | MsG0780039443.01 | 0.817635 | 2.976629e-52 | 2.179440e-49 |
MsG0180006024.01 | MsG0780039866.01 | 0.803808 | 2.921109e-49 | 1.481935e-46 |
MsG0180006024.01 | MsG0780040529.01 | 0.802108 | 6.560396e-49 | 3.186674e-46 |
MsG0180006024.01 | MsG0780040545.01 | 0.804955 | 1.684849e-49 | 8.804267e-47 |
MsG0180006024.01 | MsG0780040841.01 | 0.831485 | 1.624979e-55 | 1.765910e-52 |
MsG0180006024.01 | MsG0780041065.01 | 0.801877 | 7.318984e-49 | 3.534492e-46 |
MsG0180006024.01 | MsG0780041392.01 | 0.811318 | 7.431996e-51 | 4.585768e-48 |
MsG0180006024.01 | MsG0780041440.01 | 0.805228 | 1.477391e-49 | 7.773902e-47 |
MsG0180006024.01 | MsG0780041462.01 | 0.840372 | 9.050032e-58 | 1.286494e-54 |
MsG0180006024.01 | MsG0780041535.01 | 0.813233 | 2.839920e-51 | 1.844110e-48 |
MsG0180006024.01 | MsG0780041559.01 | 0.817037 | 4.058625e-52 | 2.923471e-49 |
MsG0180006024.01 | MsG0780041796.01 | 0.802862 | 4.586153e-49 | 2.270946e-46 |
MsG0180006024.01 | MsG0880041896.01 | 0.827695 | 1.357384e-54 | 1.320160e-51 |
MsG0180006024.01 | MsG0880042311.01 | 0.829600 | 4.702129e-55 | 4.835352e-52 |
MsG0180006024.01 | MsG0880042518.01 | 0.810819 | 9.535695e-51 | 5.806895e-48 |
MsG0180006024.01 | MsG0880042779.01 | 0.825391 | 4.807824e-54 | 4.376386e-51 |
MsG0180006024.01 | MsG0880043034.01 | 0.811844 | 5.711862e-51 | 3.573794e-48 |
MsG0180006024.01 | MsG0880043479.01 | 0.810383 | 1.184604e-50 | 7.129920e-48 |
MsG0180006024.01 | MsG0880043592.01 | 0.806481 | 8.057706e-50 | 4.378245e-47 |
MsG0180006024.01 | MsG0880044229.01 | 0.804104 | 2.534788e-49 | 1.295803e-46 |
MsG0180006024.01 | MsG0880044782.01 | 0.803182 | 3.938837e-49 | 1.966380e-46 |
MsG0180006024.01 | MsG0880045111.01 | 0.800814 | 1.207780e-48 | 5.677468e-46 |
MsG0180006024.01 | MsG0880045145.01 | 0.865114 | 7.466139e-65 | 2.401237e-61 |
MsG0180006024.01 | MsG0880045294.01 | 0.810314 | 1.226100e-50 | 7.366421e-48 |
MsG0180006024.01 | MsG0880045506.01 | 0.803156 | 3.987204e-49 | 1.989241e-46 |
MsG0180006024.01 | MsG0880045653.01 | 0.810355 | 1.201374e-50 | 7.225725e-48 |
MsG0180006024.01 | MsG0880045736.01 | 0.807207 | 5.657234e-50 | 3.132174e-47 |
MsG0180006024.01 | MsG0880045965.01 | 0.817932 | 2.551759e-52 | 1.883682e-49 |
MsG0180006024.01 | MsG0880046004.01 | 0.824017 | 1.013733e-53 | 8.871733e-51 |
MsG0180006024.01 | MsG0880046012.01 | 0.801831 | 7.478510e-49 | 3.607232e-46 |
MsG0180006024.01 | MsG0880046631.01 | 0.813086 | 3.058676e-51 | 1.978280e-48 |
MsG0180006024.01 | MsG0880047427.01 | 0.801610 | 8.301033e-49 | 3.981385e-46 |
MsG0180006024.01 | MsG0880047470.01 | 0.826925 | 2.076308e-54 | 1.974772e-51 |
MsG0180006024.01 | MsG0880047472.01 | 0.832263 | 1.044764e-55 | 1.161521e-52 |
MsG0180006024.01 | MsG0880047473.01 | 0.860348 | 2.198530e-63 | 5.991210e-60 |
MsG0180006024.01 | MsG0880047764.01 | 0.814173 | 1.762686e-51 | 1.174259e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180006024.01.T01 | MTR_1g112160 | 95.455 | 110 | 5 | 0 | 1 | 110 | 142 | 251 | 1.21e-75 | 224 |
MsG0180006024.01.T01 | MTR_1g112150 | 68.868 | 106 | 31 | 2 | 1 | 105 | 191 | 295 | 6.94e-47 | 152 |
MsG0180006024.01.T01 | MTR_2g021690 | 51.351 | 111 | 50 | 4 | 1 | 109 | 194 | 302 | 5.77e-26 | 98.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180006024.01.T01 | AT1G55230 | 47.368 | 95 | 49 | 1 | 3 | 97 | 198 | 291 | 3.63e-26 | 99.0 |
MsG0180006024.01.T01 | AT1G55240 | 47.368 | 95 | 50 | 0 | 3 | 97 | 198 | 292 | 5.79e-26 | 98.6 |
MsG0180006024.01.T01 | AT5G19870 | 51.220 | 82 | 40 | 0 | 1 | 82 | 195 | 276 | 8.22e-26 | 97.4 |
Find 21 sgRNAs with CRISPR-Local
Find 21 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTGCCTGTGGTGATCTTT+TGG | 0.244017 | 1:-98970611 | None:intergenic |
AGGTTTGTGGCTTATGTTCA+TGG | 0.281409 | 1:+98970302 | None:intergenic |
CAATTCAGCTGGTTCTTGAT+TGG | 0.309654 | 1:+98970450 | MsG0180006024.01.T01:CDS |
TGTGTCCTTCTACTTGATTA+TGG | 0.364513 | 1:+98970488 | MsG0180006024.01.T01:CDS |
TTGATTATGGCTGTAAGTTA+TGG | 0.394009 | 1:+98970501 | MsG0180006024.01.T01:CDS |
CAAGTTATTCAGATTTGCTC+TGG | 0.427300 | 1:-98970633 | None:intergenic |
TACAGCCATAATCAAGTAGA+AGG | 0.441076 | 1:-98970493 | None:intergenic |
GGTTTGTGGCTTATGTTCAT+GGG | 0.442596 | 1:+98970303 | None:intergenic |
TGGTGAATCTTCAATTCAGC+TGG | 0.455765 | 1:+98970439 | MsG0180006024.01.T01:CDS |
GGTTGCTTTACGAAACTTGA+GGG | 0.479857 | 1:+98970360 | MsG0180006024.01.T01:CDS |
CAACCTTTCGGTTCAAAACC+AGG | 0.497142 | 1:-98970342 | None:intergenic |
AGTTTCGTAAAGCAACCTTT+CGG | 0.522864 | 1:-98970354 | None:intergenic |
GAGGAACATTATCGTGAAGA+TGG | 0.535159 | 1:+98970558 | MsG0180006024.01.T01:CDS |
TGTTAAGTGCAGTGATGAAA+AGG | 0.547706 | 1:+98970395 | MsG0180006024.01.T01:CDS |
TCTTCATCGTGCTGTAGCGT+TGG | 0.552622 | 1:+98970419 | MsG0180006024.01.T01:CDS |
GTTTGTGGCTTATGTTCATG+GGG | 0.570855 | 1:+98970304 | None:intergenic |
GATTTGCTCTGGCTTGCCTG+TGG | 0.582887 | 1:-98970622 | None:intergenic |
GTATGTTTCACTGATGATGA+AGG | 0.586326 | 1:+98970536 | MsG0180006024.01.T01:CDS |
CAATGCCAAAAGATCACCAC+AGG | 0.593405 | 1:+98970606 | MsG0180006024.01.T01:CDS |
AGGTTGCTTTACGAAACTTG+AGG | 0.630393 | 1:+98970359 | MsG0180006024.01.T01:CDS |
TGTTTCACTGATGATGAAGG+AGG | 0.670252 | 1:+98970539 | MsG0180006024.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
TTGATTATGGCTGTAAGTTA+TGG | + | Chr1:98970501-98970520 | MsG0180006024.01.T01:CDS | 30.0% | |
AGTTTCGTAAAGCAACCTTT+CGG | - | Chr1:98970357-98970376 | None:intergenic | 35.0% | |
TACAGCCATAATCAAGTAGA+AGG | - | Chr1:98970496-98970515 | None:intergenic | 35.0% | |
TGTGTCCTTCTACTTGATTA+TGG | + | Chr1:98970488-98970507 | MsG0180006024.01.T01:CDS | 35.0% | |
TGTTAAGTGCAGTGATGAAA+AGG | + | Chr1:98970395-98970414 | MsG0180006024.01.T01:CDS | 35.0% | |
! | GTATGTTTCACTGATGATGA+AGG | + | Chr1:98970536-98970555 | MsG0180006024.01.T01:CDS | 35.0% |
GAGGAACATTATCGTGAAGA+TGG | + | Chr1:98970558-98970577 | MsG0180006024.01.T01:CDS | 40.0% | |
TGGTGAATCTTCAATTCAGC+TGG | + | Chr1:98970439-98970458 | MsG0180006024.01.T01:CDS | 40.0% | |
! | AGGTTGCTTTACGAAACTTG+AGG | + | Chr1:98970359-98970378 | MsG0180006024.01.T01:CDS | 40.0% |
! | CAATTCAGCTGGTTCTTGAT+TGG | + | Chr1:98970450-98970469 | MsG0180006024.01.T01:CDS | 40.0% |
! | GGTTGCTTTACGAAACTTGA+GGG | + | Chr1:98970360-98970379 | MsG0180006024.01.T01:CDS | 40.0% |
! | TGTGGTGATCTTTTGGCATT+GGG | - | Chr1:98970607-98970626 | None:intergenic | 40.0% |
! | TGTTTCACTGATGATGAAGG+AGG | + | Chr1:98970539-98970558 | MsG0180006024.01.T01:CDS | 40.0% |
CAACCTTTCGGTTCAAAACC+AGG | - | Chr1:98970345-98970364 | None:intergenic | 45.0% | |
CAATGCCAAAAGATCACCAC+AGG | + | Chr1:98970606-98970625 | MsG0180006024.01.T01:CDS | 45.0% | |
! | CTGTGGTGATCTTTTGGCAT+TGG | - | Chr1:98970608-98970627 | None:intergenic | 45.0% |
!!! | ACACCTGGTTTTGAACCGAA+AGG | + | Chr1:98970339-98970358 | MsG0180006024.01.T01:CDS | 45.0% |
TCTTCATCGTGCTGTAGCGT+TGG | + | Chr1:98970419-98970438 | MsG0180006024.01.T01:CDS | 50.0% | |
! | GCTTGCCTGTGGTGATCTTT+TGG | - | Chr1:98970614-98970633 | None:intergenic | 50.0% |
!! | GGGCTCATGCTTTTTACACC+TGG | + | Chr1:98970324-98970343 | MsG0180006024.01.T01:CDS | 50.0% |
! | GATTTGCTCTGGCTTGCCTG+TGG | - | Chr1:98970625-98970644 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 98970315 | 98970647 | 98970315 | ID=MsG0180006024.01;Name=MsG0180006024.01 |
Chr1 | mRNA | 98970315 | 98970647 | 98970315 | ID=MsG0180006024.01.T01;Parent=MsG0180006024.01;Name=MsG0180006024.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|110 |
Chr1 | exon | 98970315 | 98970647 | 98970315 | ID=MsG0180006024.01.T01:exon:11007;Parent=MsG0180006024.01.T01 |
Chr1 | CDS | 98970315 | 98970647 | 98970315 | ID=MsG0180006024.01.T01:cds;Parent=MsG0180006024.01.T01 |
Gene Sequence |
Protein sequence |