AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004226.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004226.01.T01 MTR_1g077550 76.623 77 18 0 1 77 54 130 8.24e-35 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004226.01.T01 AT1G28150 63.235 68 23 1 12 77 56 123 2.50e-23 85.9
MsG0180004226.01.T01 AT1G28150 63.235 68 23 1 12 77 56 123 2.50e-23 85.9

Find 25 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCAGTAGTTGATTCTTC+TGG 0.258189 1:-75127427 None:intergenic
TTCTTAGGTGGGATATTTGC+TGG 0.305119 1:+75127313 MsG0180004226.01.T01:CDS
CATATAGGACATAATAGTTC+TGG 0.312454 1:+75127586 MsG0180004226.01.T01:three_prime_UTR
CAGGAACCAGTGGCATTCTT+AGG 0.325742 1:+75127298 MsG0180004226.01.T01:intron
TGGTAAATTGTCAACATTCA+TGG 0.342708 1:+75127634 MsG0180004226.01.T01:three_prime_UTR
ATTGTTTGCACCATTTGTTT+TGG 0.357688 1:+75127754 MsG0180004226.01.T01:three_prime_UTR
AGTAGTTGATTCTTCTGGAT+TGG 0.410215 1:-75127422 None:intergenic
AATTGTCAACATTCATGGCT+TGG 0.447143 1:+75127639 MsG0180004226.01.T01:three_prime_UTR
TATTCAATTTCAATCTCTTG+TGG 0.483856 1:-75127454 None:intergenic
ACAAATTATTATTGTGCTGT+TGG 0.485885 1:-75127522 None:intergenic
GGTTAAACTGCCAAAACAAA+TGG 0.497837 1:-75127764 None:intergenic
ATGAGGAACCTCTGAAGGAA+TGG 0.505614 1:+75127356 MsG0180004226.01.T01:CDS
TTTAAGGCTTGATTTGAATG+AGG 0.510298 1:+75127339 MsG0180004226.01.T01:CDS
TGAGGAACCTCTGAAGGAAT+GGG 0.523835 1:+75127357 MsG0180004226.01.T01:CDS
TCTTCAACTGTCATGCACTC+AGG 0.533853 1:+75124677 MsG0180004226.01.T01:CDS
CTCGTAACCCATTCCTTCAG+AGG 0.539677 1:-75127364 None:intergenic
GAACCAGTGGCATTCTTAGG+TGG 0.545711 1:+75127301 MsG0180004226.01.T01:CDS
TTTGAATGAGGAACCTCTGA+AGG 0.563194 1:+75127351 MsG0180004226.01.T01:CDS
TTCTAATCTGCAGGAACCAG+TGG 0.573380 1:+75127288 MsG0180004226.01.T01:intron
ATCCCACCTAAGAATGCCAC+TGG 0.574031 1:-75127304 None:intergenic
TGAGTGCATGACAGTTGAAG+AGG 0.582968 1:-75124675 None:intergenic
CTAGTGTGGTAGTTGCGAGT+TGG 0.583653 1:+75124601 None:intergenic
CTCTGAAGGAATGGGTTACG+AGG 0.596910 1:+75127365 MsG0180004226.01.T01:CDS
AACCAGTGGCATTCTTAGGT+GGG 0.598806 1:+75127302 MsG0180004226.01.T01:CDS
GTAGTTGCGAGTTGGAACAA+AGG 0.679107 1:+75124609 MsG0180004226.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATATAAGGATAATT+TGG + Chr1:75125900-75125919 MsG0180004226.01.T01:intron 10.0%
!! AGAAAAAATTGTTAATAATA+TGG + Chr1:75125777-75125796 MsG0180004226.01.T01:intron 10.0%
!!! ATTTATTTTAGCTTATTTAT+TGG + Chr1:75124998-75125017 MsG0180004226.01.T01:intron 10.0%
!!! TGAGATTTTAAATTAATATA+AGG + Chr1:75125891-75125910 MsG0180004226.01.T01:intron 10.0%
!! ATAAAGAGGAATAATAATAA+CGG - Chr1:75124704-75124723 None:intergenic 15.0%
!! GAGAAATAAATAAATTGTAA+TGG - Chr1:75126316-75126335 None:intergenic 15.0%
!!! AAACAACTTTTACTATTATT+AGG - Chr1:75125838-75125857 None:intergenic 15.0%
!!! AGATTTTTAATTTGAATGTT+TGG - Chr1:75125973-75125992 None:intergenic 15.0%
!!! ATTCAAGTTATTCTAAAATT+TGG - Chr1:75126755-75126774 None:intergenic 15.0%
!!! ATTTTAATTAAAAGTGTGTT+TGG + Chr1:75125571-75125590 MsG0180004226.01.T01:intron 15.0%
!!! CCTTATTTAATTAAGTTTAA+GGG - Chr1:75125642-75125661 None:intergenic 15.0%
!!! TCCTTATTTAATTAAGTTTA+AGG - Chr1:75125643-75125662 None:intergenic 15.0%
!!! TTCAAGTTATTCTAAAATTT+GGG - Chr1:75126754-75126773 None:intergenic 15.0%
!!! TTTTACTATTATTAGGTTAT+AGG - Chr1:75125831-75125850 None:intergenic 15.0%
!! AAGCTAAAATAAATACAAGA+AGG - Chr1:75124992-75125011 None:intergenic 20.0%
!! ACAAAATTAACAACTAACAT+TGG + Chr1:75125288-75125307 MsG0180004226.01.T01:intron 20.0%
!! CCCTTAAACTTAATTAAATA+AGG + Chr1:75125639-75125658 MsG0180004226.01.T01:intron 20.0%
!! GTTATTATTATTCCTCTTTA+TGG + Chr1:75124703-75124722 MsG0180004226.01.T01:intron 20.0%
!! TGATTCTACTATGATTTATT+AGG - Chr1:75126464-75126483 None:intergenic 20.0%
!! TTGATAAATAAAGAAGTTCA+TGG - Chr1:75126956-75126975 None:intergenic 20.0%
!!! ATACAAATAGAGTTTTATGT+CGG + Chr1:75125370-75125389 MsG0180004226.01.T01:intron 20.0%
!!! ATTTATTTCTCAGTTCTTTT+GGG + Chr1:75126325-75126344 MsG0180004226.01.T01:intron 20.0%
!!! ATTTTCAAGTGTCTTTATTT+TGG + Chr1:75127709-75127728 MsG0180004226.01.T01:three_prime_UTR 20.0%
!!! CAATTTTATCACAATTCTAT+AGG + Chr1:75127180-75127199 MsG0180004226.01.T01:intron 20.0%
!!! TATTTATTTCTCAGTTCTTT+TGG + Chr1:75126324-75126343 MsG0180004226.01.T01:intron 20.0%
!!! TGCAAGTTTTAAAGAAATAA+AGG - Chr1:75127489-75127508 None:intergenic 20.0%
!!! TTATCACACATTTTTCATAT+AGG + Chr1:75127571-75127590 MsG0180004226.01.T01:three_prime_UTR 20.0%
!!! TTTGAAGTTCTGTTATTTTT+GGG - Chr1:75126368-75126387 None:intergenic 20.0%
! AATGAAAAAGTTCTCACAAA+GGG - Chr1:75126881-75126900 None:intergenic 25.0%
! ACAAATTATTATTGTGCTGT+TGG - Chr1:75127525-75127544 None:intergenic 25.0%
! ATGTTCAGCTTATTTCAATT+TGG + Chr1:75125032-75125051 MsG0180004226.01.T01:intron 25.0%
! GCTATATATAAGAGAAAGTT+TGG + Chr1:75125078-75125097 MsG0180004226.01.T01:intron 25.0%
! TATTCAATTTCAATCTCTTG+TGG - Chr1:75127457-75127476 None:intergenic 25.0%
! TGTCTTAGTTAATATGGATT+AGG - Chr1:75126490-75126509 None:intergenic 25.0%
! TTGTTCATGAATCAATTGTA+AGG - Chr1:75126062-75126081 None:intergenic 25.0%
!! AATTTCAGTTTTACACCAAA+AGG - Chr1:75126187-75126206 None:intergenic 25.0%
!! AGCTGATTTAGTTCAAAATT+TGG - Chr1:75125128-75125147 None:intergenic 25.0%
!! TGATGATGTCTTAGTTAATA+TGG - Chr1:75126496-75126515 None:intergenic 25.0%
!!! ATTGCTAGGCTTTAAAAATT+TGG + Chr1:75127238-75127257 MsG0180004226.01.T01:intron 25.0%
!!! CTTTGAAGTTCTGTTATTTT+TGG - Chr1:75126369-75126388 None:intergenic 25.0%
!!! TTGGTTCAATTTTTAGAGAA+GGG - Chr1:75125954-75125973 None:intergenic 25.0%
!!! TTTGGTTCAATTTTTAGAGA+AGG - Chr1:75125955-75125974 None:intergenic 25.0%
!!! TTTTGGAAATCAAAGACAAA+AGG + Chr1:75127726-75127745 MsG0180004226.01.T01:three_prime_UTR 25.0%
AAAATCTAACAAGATCAGCT+AGG + Chr1:75125181-75125200 MsG0180004226.01.T01:intron 30.0%
AACTTCAAAGCAATTAAACG+TGG + Chr1:75126379-75126398 MsG0180004226.01.T01:intron 30.0%
AATTAAGCAATTACACTTGC+AGG - Chr1:75125341-75125360 None:intergenic 30.0%
AGATAACATAACCTGACTAT+AGG - Chr1:75126035-75126054 None:intergenic 30.0%
ATTATAGAGCTTGTAGTGTT+TGG - Chr1:75126715-75126734 None:intergenic 30.0%
CAATTGAATGAAGAGAAAAC+AGG - Chr1:75124731-75124750 None:intergenic 30.0%
CACTACAAGCTCTATAATAT+AGG + Chr1:75126717-75126736 MsG0180004226.01.T01:intron 30.0%
CATATAGGACATAATAGTTC+TGG + Chr1:75127586-75127605 MsG0180004226.01.T01:three_prime_UTR 30.0%
GAATATAAAAAATACGCCTC+AGG + Chr1:75125054-75125073 MsG0180004226.01.T01:intron 30.0%
GAATGAAAAAGTTCTCACAA+AGG - Chr1:75126882-75126901 None:intergenic 30.0%
GATAACATAACCTGACTATA+GGG - Chr1:75126034-75126053 None:intergenic 30.0%
TAAACTGTCAGTGGAAAATA+TGG + Chr1:75126097-75126116 MsG0180004226.01.T01:intron 30.0%
TACAAGAAGGAGCTAAAATA+TGG - Chr1:75124979-75124998 None:intergenic 30.0%
TATGTTAACAAGTTGCTATC+TGG + Chr1:75127110-75127129 MsG0180004226.01.T01:intron 30.0%
TGAAATTGAAGCAGAAATGT+AGG + Chr1:75124759-75124778 MsG0180004226.01.T01:intron 30.0%
TGGTAAATTGTCAACATTCA+TGG + Chr1:75127634-75127653 MsG0180004226.01.T01:three_prime_UTR 30.0%
TTATAGAGCTTGTAGTGTTT+GGG - Chr1:75126714-75126733 None:intergenic 30.0%
! ATGGACTGTAATTTAGGAAT+TGG + Chr1:75126845-75126864 MsG0180004226.01.T01:intron 30.0%
! ATTGTTTGCACCATTTGTTT+TGG + Chr1:75127754-75127773 MsG0180004226.01.T01:three_prime_UTR 30.0%
! CTAATCATGGACTGTAATTT+AGG + Chr1:75126839-75126858 MsG0180004226.01.T01:intron 30.0%
! CTTTAAAAAGACGAAGACAA+AGG - Chr1:75127613-75127632 None:intergenic 30.0%
! GAATAGAATGTTGCTTGAAA+TGG - Chr1:75126566-75126585 None:intergenic 30.0%
! TCATACCAGTGTTATTACAA+GGG - Chr1:75127004-75127023 None:intergenic 30.0%
! TTCATACCAGTGTTATTACA+AGG - Chr1:75127005-75127024 None:intergenic 30.0%
! TTTAAGGCTTGATTTGAATG+AGG + Chr1:75127339-75127358 MsG0180004226.01.T01:CDS 30.0%
! TTTTGCATCACAATTTTCAG+TGG - Chr1:75126157-75126176 None:intergenic 30.0%
!! GGATATTTGCTGGTATTTTA+AGG + Chr1:75127323-75127342 MsG0180004226.01.T01:CDS 30.0%
!! TGGTTCAATTTTTAGAGAAG+GGG - Chr1:75125953-75125972 None:intergenic 30.0%
!! TGTCTTCGTCTTTTTAAAGA+TGG + Chr1:75127614-75127633 MsG0180004226.01.T01:three_prime_UTR 30.0%
!!! AGTTCTTTTGGGATAAAAGA+GGG + Chr1:75126336-75126355 MsG0180004226.01.T01:intron 30.0%
AAAGCAATTAAACGTGGAGT+AGG + Chr1:75126385-75126404 MsG0180004226.01.T01:intron 35.0%
AAGCACATATAAACTGTCAG+TGG + Chr1:75126088-75126107 MsG0180004226.01.T01:intron 35.0%
AATTGTCAACATTCATGGCT+TGG + Chr1:75127639-75127658 MsG0180004226.01.T01:three_prime_UTR 35.0%
AGAAAACAGGAACCATAAAG+AGG - Chr1:75124718-75124737 None:intergenic 35.0%
ATGAACCCTTGTAATAACAC+TGG + Chr1:75126996-75127015 MsG0180004226.01.T01:intron 35.0%
GGAATTAAAACCTATGCTTC+TGG - Chr1:75124828-75124847 None:intergenic 35.0%
GGTTAAACTGCCAAAACAAA+TGG - Chr1:75127767-75127786 None:intergenic 35.0%
GGTTGGATTAAGCTTAACAT+GGG - Chr1:75126800-75126819 None:intergenic 35.0%
GTTGGATTAAGCTTAACATG+GGG - Chr1:75126799-75126818 None:intergenic 35.0%
TAAAGAAGTTCATGGTGAAC+TGG - Chr1:75126948-75126967 None:intergenic 35.0%
TACAGTCCATGATTAGATTG+TGG - Chr1:75126835-75126854 None:intergenic 35.0%
TAGCTACATCATAAGAACCA+GGG - Chr1:75127156-75127175 None:intergenic 35.0%
TATCACCATCATCAATTTCG+CGG + Chr1:75124786-75124805 MsG0180004226.01.T01:intron 35.0%
TCTCTTATATATAGCACCTG+AGG - Chr1:75125073-75125092 None:intergenic 35.0%
TTAACAAGTTGCTATCTGGA+TGG + Chr1:75127114-75127133 MsG0180004226.01.T01:intron 35.0%
TTAAGCTTAATCCAACCCAA+AGG + Chr1:75126803-75126822 MsG0180004226.01.T01:intron 35.0%
! AAAAGTGTGTTTGGTTCACA+AGG + Chr1:75125580-75125599 MsG0180004226.01.T01:intron 35.0%
! AAAGTGTGTTTGGTTCACAA+GGG + Chr1:75125581-75125600 MsG0180004226.01.T01:intron 35.0%
! AGTAGTTGATTCTTCTGGAT+TGG - Chr1:75127425-75127444 None:intergenic 35.0%
! ATGCAAAAGTCATGTCCTTT+TGG + Chr1:75126169-75126188 MsG0180004226.01.T01:intron 35.0%
! GATTGATAACACATGAGACA+TGG - Chr1:75125431-75125450 None:intergenic 35.0%
!! ATTCCTTTCGAGTTGGTAAT+CGG + Chr1:75124843-75124862 MsG0180004226.01.T01:intron 35.0%
!! CTCTTGTTATTCTAATCTGC+AGG + Chr1:75127279-75127298 MsG0180004226.01.T01:intron 35.0%
!! TCAATTTTTAGAGAAGGGGA+GGG - Chr1:75125949-75125968 None:intergenic 35.0%
!! TTCAATTTTTAGAGAAGGGG+AGG - Chr1:75125950-75125969 None:intergenic 35.0%
!!! CAGTTCTTTTGGGATAAAAG+AGG + Chr1:75126335-75126354 MsG0180004226.01.T01:intron 35.0%
!!! GGTTTTAATTCCTTTCGAGT+TGG + Chr1:75124836-75124855 MsG0180004226.01.T01:intron 35.0%
AACGATTTCTCCAATGACTG+TGG - Chr1:75126613-75126632 None:intergenic 40.0%
AGGTAGCCACAATCTAATCA+TGG + Chr1:75126826-75126845 MsG0180004226.01.T01:intron 40.0%
AGTCATTGGAGAAATCGTTG+AGG + Chr1:75126614-75126633 MsG0180004226.01.T01:intron 40.0%
ATCTAACAAGATCAGCTAGG+AGG + Chr1:75125184-75125203 MsG0180004226.01.T01:intron 40.0%
CGATGTAGACGATGGAATAA+CGG + Chr1:75125705-75125724 MsG0180004226.01.T01:intron 40.0%
GACATCATCAGTACATGAGT+TGG + Chr1:75126506-75126525 MsG0180004226.01.T01:intron 40.0%
GAGAATTTCCATGCTCTAGT+TGG - Chr1:75126442-75126461 None:intergenic 40.0%
GGGTTGGATTAAGCTTAACA+TGG - Chr1:75126801-75126820 None:intergenic 40.0%
GTAGCTACATCATAAGAACC+AGG - Chr1:75127157-75127176 None:intergenic 40.0%
GTTAGAGAGTGGAGTGATAA+CGG + Chr1:75125241-75125260 MsG0180004226.01.T01:intron 40.0%
TAACAACACGATGTAGACGA+TGG + Chr1:75125697-75125716 MsG0180004226.01.T01:intron 40.0%
TAACATGGGGCTTCTAATAG+TGG - Chr1:75126786-75126805 None:intergenic 40.0%
TACATCATAAGAACCAGGGA+TGG - Chr1:75127152-75127171 None:intergenic 40.0%
TCCAAAACTCTCGAACCAAA+CGG + Chr1:75126007-75126026 MsG0180004226.01.T01:intron 40.0%
TCTAACAAGATCAGCTAGGA+GGG + Chr1:75125185-75125204 MsG0180004226.01.T01:intron 40.0%
TGAGACATGGCACAACTATA+TGG - Chr1:75125418-75125437 None:intergenic 40.0%
TTCTTAGGTGGGATATTTGC+TGG + Chr1:75127313-75127332 MsG0180004226.01.T01:CDS 40.0%
TTTCTCTTAGCTGATCTCGT+TGG - Chr1:75126415-75126434 None:intergenic 40.0%
TTTGAATGAGGAACCTCTGA+AGG + Chr1:75127351-75127370 MsG0180004226.01.T01:CDS 40.0%
! AAGTGTGTTTGGTTCACAAG+GGG + Chr1:75125582-75125601 MsG0180004226.01.T01:intron 40.0%
! ATCAACAGAACCAGAAGCAT+AGG + Chr1:75124815-75124834 MsG0180004226.01.T01:intron 40.0%
! GCTTCAGTAGTTGATTCTTC+TGG - Chr1:75127430-75127449 None:intergenic 40.0%
! TGGTGAACTGGTGAACTTTT+CGG - Chr1:75126936-75126955 None:intergenic 40.0%
!! AGGGAAGGAATTTTAACAGG+AGG + Chr1:75125532-75125551 MsG0180004226.01.T01:intron 40.0%
!! CAATTTTTAGAGAAGGGGAG+GGG - Chr1:75125948-75125967 None:intergenic 40.0%
!! GGAAGGAATTTTAACAGGAG+GGG + Chr1:75125534-75125553 MsG0180004226.01.T01:intron 40.0%
!! GGGAAGGAATTTTAACAGGA+GGG + Chr1:75125533-75125552 MsG0180004226.01.T01:intron 40.0%
!!! TTTGGTTCGAGAGTTTTGGA+GGG - Chr1:75126007-75126026 None:intergenic 40.0%
AACCAGTGGCATTCTTAGGT+GGG + Chr1:75127302-75127321 MsG0180004226.01.T01:CDS 45.0%
ACTCCGATTACCAACTCGAA+AGG - Chr1:75124849-75124868 None:intergenic 45.0%
AGATTGTGGCTACCTCCTTT+GGG - Chr1:75126821-75126840 None:intergenic 45.0%
AGCTTAATCCAACCCAAAGG+AGG + Chr1:75126806-75126825 MsG0180004226.01.T01:intron 45.0%
ATGTTCGAGAATTAGGAGGG+GGG + Chr1:75125503-75125522 MsG0180004226.01.T01:intron 45.0%
ATTCTCGAACATCGCAACCA+AGG - Chr1:75125495-75125514 None:intergenic 45.0%
CGATGTTCGAGAATTAGGAG+GGG + Chr1:75125501-75125520 MsG0180004226.01.T01:intron 45.0%
CTAACAAGATCAGCTAGGAG+GGG + Chr1:75125186-75125205 MsG0180004226.01.T01:intron 45.0%
GAAACAAGCCAACTAGAGCA+TGG + Chr1:75126431-75126450 MsG0180004226.01.T01:intron 45.0%
GAAGTGGAAGAGTTAGAGAG+TGG + Chr1:75125230-75125249 MsG0180004226.01.T01:intron 45.0%
GATGTTCGAGAATTAGGAGG+GGG + Chr1:75125502-75125521 MsG0180004226.01.T01:intron 45.0%
GCGATGTTCGAGAATTAGGA+GGG + Chr1:75125500-75125519 MsG0180004226.01.T01:intron 45.0%
GGTTGCGATGTTCGAGAATT+AGG + Chr1:75125496-75125515 MsG0180004226.01.T01:intron 45.0%
TAGATTGTGGCTACCTCCTT+TGG - Chr1:75126822-75126841 None:intergenic 45.0%
TCTCGTCAAAGAAGCTGTCA+AGG + Chr1:75124907-75124926 MsG0180004226.01.T01:intron 45.0%
TCTTCAACTGTCATGCACTC+AGG + Chr1:75124677-75124696 MsG0180004226.01.T01:CDS 45.0%
TGACAGCTTCTTTGACGAGA+GGG - Chr1:75124907-75124926 None:intergenic 45.0%
TGAGTGCATGACAGTTGAAG+AGG - Chr1:75124678-75124697 None:intergenic 45.0%
TGCGATGTTCGAGAATTAGG+AGG + Chr1:75125499-75125518 MsG0180004226.01.T01:intron 45.0%
TTAGTTGTGTCCTGTGACCT+TGG + Chr1:75125475-75125494 MsG0180004226.01.T01:intron 45.0%
TTCTAATCTGCAGGAACCAG+TGG + Chr1:75127288-75127307 MsG0180004226.01.T01:intron 45.0%
TTGACAGCTTCTTTGACGAG+AGG - Chr1:75124908-75124927 None:intergenic 45.0%
! ATGAGGAACCTCTGAAGGAA+TGG + Chr1:75127356-75127375 MsG0180004226.01.T01:CDS 45.0%
! ATGTTGCTTGAAATGGCGAG+AGG - Chr1:75126559-75126578 None:intergenic 45.0%
! CATGAGTTGGCTTCACGATA+TGG + Chr1:75126519-75126538 MsG0180004226.01.T01:intron 45.0%
! GGTGAACTGGTGAACTTTTC+GGG - Chr1:75126935-75126954 None:intergenic 45.0%
! GTAAGTTGACTTACCATCCC+TGG + Chr1:75127136-75127155 MsG0180004226.01.T01:intron 45.0%
! GTAGTTGCGAGTTGGAACAA+AGG + Chr1:75124609-75124628 MsG0180004226.01.T01:five_prime_UTR 45.0%
! TGAGGAACCTCTGAAGGAAT+GGG + Chr1:75127357-75127376 MsG0180004226.01.T01:CDS 45.0%
! TGTAGTTAGCCTGGTCTGAT+GGG - Chr1:75126685-75126704 None:intergenic 45.0%
! TTGTAGTTAGCCTGGTCTGA+TGG - Chr1:75126686-75126705 None:intergenic 45.0%
!! AGGAATTTTAACAGGAGGGG+AGG + Chr1:75125537-75125556 MsG0180004226.01.T01:intron 45.0%
!! GAATTTTAACAGGAGGGGAG+GGG + Chr1:75125539-75125558 MsG0180004226.01.T01:intron 45.0%
!! GGAATTTTAACAGGAGGGGA+GGG + Chr1:75125538-75125557 MsG0180004226.01.T01:intron 45.0%
!! GGGAGGGAAGGAATTTTAAC+AGG + Chr1:75125529-75125548 MsG0180004226.01.T01:intron 45.0%
!! GTTTGGTTCGAGAGTTTTGG+AGG - Chr1:75126008-75126027 None:intergenic 45.0%
!! TCCGTTTGGTTCGAGAGTTT+TGG - Chr1:75126011-75126030 None:intergenic 45.0%
!! TGGAGTGATAACGGTGTTCT+CGG + Chr1:75125250-75125269 MsG0180004226.01.T01:intron 45.0%
!!! TTGGTTCGAGAGTTTTGGAG+GGG - Chr1:75126006-75126025 None:intergenic 45.0%
!!! GTTTTTTTTTTTTTTTTTAA+CGG - Chr1:75125314-75125333 None:intergenic 5.0%
AACATCGCAACCAAGGTCAC+AGG - Chr1:75125488-75125507 None:intergenic 50.0%
ACCAAACGGACCCTATAGTC+AGG + Chr1:75126021-75126040 MsG0180004226.01.T01:intron 50.0%
ACCTGACTATAGGGTCCGTT+TGG - Chr1:75126025-75126044 None:intergenic 50.0%
AGCTAGGAGGGGAATGAAGT+TGG + Chr1:75125197-75125216 MsG0180004226.01.T01:intron 50.0%
ATCCCACCTAAGAATGCCAC+TGG - Chr1:75127307-75127326 None:intergenic 50.0%
CAGGAACCAGTGGCATTCTT+AGG + Chr1:75127298-75127317 MsG0180004226.01.T01:intron 50.0%
CCTAGCAATGAACGTTCCTG+CGG - Chr1:75127227-75127246 None:intergenic 50.0%
CGAGTCCGCGAAATTGATGA+TGG - Chr1:75124794-75124813 None:intergenic 50.0%
CTAGCAATGAACGTTCCTGC+GGG - Chr1:75127226-75127245 None:intergenic 50.0%
CTCGTAACCCATTCCTTCAG+AGG - Chr1:75127367-75127386 None:intergenic 50.0%
CTTGAAATGGCGAGAGGTGA+AGG - Chr1:75126553-75126572 None:intergenic 50.0%
GAACCAGTGGCATTCTTAGG+TGG + Chr1:75127301-75127320 MsG0180004226.01.T01:CDS 50.0%
GGGAGAGATTGTAGTTAGCC+TGG - Chr1:75126694-75126713 None:intergenic 50.0%
TCCAACTCGCAACTACCACA+AGG - Chr1:75124605-75124624 None:intergenic 50.0%
TCTCCAATGACTGTGGAGCT+CGG - Chr1:75126606-75126625 None:intergenic 50.0%
TGTTCGAGAATTAGGAGGGG+GGG + Chr1:75125504-75125523 MsG0180004226.01.T01:intron 50.0%
! CTCGGTGGAGTTTGGTGAAA+TGG - Chr1:75126588-75126607 None:intergenic 50.0%
! GTGTTTGGTTCACAAGGGGA+GGG + Chr1:75125586-75125605 MsG0180004226.01.T01:intron 50.0%
! TGTGTTTGGTTCACAAGGGG+AGG + Chr1:75125585-75125604 MsG0180004226.01.T01:intron 50.0%
! TGTTTGGTTCACAAGGGGAG+GGG + Chr1:75125587-75125606 MsG0180004226.01.T01:intron 50.0%
!! AGTTGGCTTGGTGGTTGAAG+TGG + Chr1:75125214-75125233 MsG0180004226.01.T01:intron 50.0%
!! CTCTGAAGGAATGGGTTACG+AGG + Chr1:75127365-75127384 MsG0180004226.01.T01:CDS 50.0%
!! TTTTAGAGAAGGGGAGGGGA+GGG - Chr1:75125944-75125963 None:intergenic 50.0%
!! TTTTTAGAGAAGGGGAGGGG+AGG - Chr1:75125945-75125964 None:intergenic 50.0%
!!! TTCGAGAGTTTTGGAGGGGA+GGG - Chr1:75126002-75126021 None:intergenic 50.0%
AAGCATTCTGTTCAGCCCGC+AGG + Chr1:75127208-75127227 MsG0180004226.01.T01:intron 55.0%
AGCTCGAAACCCATCAGACC+AGG + Chr1:75126673-75126692 MsG0180004226.01.T01:intron 55.0%
CCGCAGGAACGTTCATTGCT+AGG + Chr1:75127224-75127243 MsG0180004226.01.T01:intron 55.0%
GGAGGGGAATGAAGTTGGCT+TGG + Chr1:75125202-75125221 MsG0180004226.01.T01:intron 55.0%
TGTGGCTACCTCCTTTGGGT+TGG - Chr1:75126817-75126836 None:intergenic 55.0%
TTGACGAGAGGGTCTTGAGC+AGG - Chr1:75124896-75124915 None:intergenic 55.0%
TTTAACAGGAGGGGAGGGGA+GGG + Chr1:75125543-75125562 MsG0180004226.01.T01:intron 55.0%
TTTAGAGAAGGGGAGGGGAG+GGG - Chr1:75125943-75125962 None:intergenic 55.0%
! TTTTAACAGGAGGGGAGGGG+AGG + Chr1:75125542-75125561 MsG0180004226.01.T01:intron 55.0%
!! GGGGAATGAAGTTGGCTTGG+TGG + Chr1:75125205-75125224 MsG0180004226.01.T01:intron 55.0%
!!! GTTCGAGAGTTTTGGAGGGG+AGG - Chr1:75126003-75126022 None:intergenic 55.0%
!!! TCGAGAGTTTTGGAGGGGAG+GGG - Chr1:75126001-75126020 None:intergenic 55.0%
CCAATGACTGTGGAGCTCGG+TGG - Chr1:75126603-75126622 None:intergenic 60.0%
CCACCGAGCTCCACAGTCAT+TGG + Chr1:75126600-75126619 MsG0180004226.01.T01:intron 60.0%
CGAGAATTAGGAGGGGGGGA+GGG + Chr1:75125508-75125527 MsG0180004226.01.T01:intron 60.0%
GAGAATTAGGAGGGGGGGAG+GGG + Chr1:75125509-75125528 MsG0180004226.01.T01:intron 60.0%
TCGAGAATTAGGAGGGGGGG+AGG + Chr1:75125507-75125526 MsG0180004226.01.T01:intron 60.0%
TGGTTCACAAGGGGAGGGGA+GGG + Chr1:75125591-75125610 MsG0180004226.01.T01:intron 60.0%
TTAACAGGAGGGGAGGGGAG+GGG + Chr1:75125544-75125563 MsG0180004226.01.T01:intron 60.0%
TTGGTTCACAAGGGGAGGGG+AGG + Chr1:75125590-75125609 MsG0180004226.01.T01:intron 60.0%
! CTGTGGAGCTCGGTGGAGTT+TGG - Chr1:75126596-75126615 None:intergenic 60.0%
!!! AGAGTTTTGGAGGGGAGGGG+AGG - Chr1:75125998-75126017 None:intergenic 60.0%
!!! AGTTTTGGAGGGGAGGGGAG+GGG - Chr1:75125996-75126015 None:intergenic 60.0%
!!! GAGTTTTGGAGGGGAGGGGA+GGG - Chr1:75125997-75126016 None:intergenic 60.0%
AATTAGGAGGGGGGGAGGGG+AGG + Chr1:75125512-75125531 MsG0180004226.01.T01:intron 65.0%
ATTAGGAGGGGGGGAGGGGA+GGG + Chr1:75125513-75125532 MsG0180004226.01.T01:intron 65.0%
! GGAGGGGGGGAGGGGAGGGA+AGG + Chr1:75125517-75125536 MsG0180004226.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 75124605 75127787 75124605 ID=MsG0180004226.01;Name=MsG0180004226.01
Chr1 mRNA 75124605 75127787 75124605 ID=MsG0180004226.01.T01;Parent=MsG0180004226.01;Name=MsG0180004226.01.T01;_AED=0.46;_eAED=0.46;_QI=37|0|1|1|0|0.5|2|310|77
Chr1 exon 75124605 75124698 75124605 ID=MsG0180004226.01.T01:exon:31724;Parent=MsG0180004226.01.T01
Chr1 exon 75127301 75127787 75127301 ID=MsG0180004226.01.T01:exon:31725;Parent=MsG0180004226.01.T01
Chr1 five_prime_UTR 75124605 75124641 75124605 ID=MsG0180004226.01.T01:five_prime_utr;Parent=MsG0180004226.01.T01
Chr1 CDS 75124642 75124698 75124642 ID=MsG0180004226.01.T01:cds;Parent=MsG0180004226.01.T01
Chr1 CDS 75127301 75127477 75127301 ID=MsG0180004226.01.T01:cds;Parent=MsG0180004226.01.T01
Chr1 three_prime_UTR 75127478 75127787 75127478 ID=MsG0180004226.01.T01:three_prime_utr;Parent=MsG0180004226.01.T01
Gene Sequence

>MsG0180004226.01.T01

ATGTCTCTTCTCTTTACTTCGTCTTCTGTTTCTCCTCTTCAACTGTCATGCACTCAGGAACCAGTGGCATTCTTAGGTGGGATATTTGCTGGTATTTTAAGGCTTGATTTGAATGAGGAACCTCTGAAGGAATGGGTTACGAGGACTGTTGAAGCTTCTGATATTAGTGAAGAAGAAACCAATCCAGAAGAATCAACTACTGAAGCTGCTCCACAAGAGATTGAAATTGAATAA

Protein sequence

>MsG0180004226.01.T01

MSLLFTSSSVSPLQLSCTQEPVAFLGGIFAGILRLDLNEEPLKEWVTRTVEASDISEEETNPEESTTEAAPQEIEIE*