AlfalfaGEDB | MsG0880046565.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046565.01

KEGG: -
GO: GO:0000278 GO:0000775 GO:0003676 GO:0005634 GO:0007049 GO:0008270
PFAM: PF00098 PF05859 PF14223

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046565.01.T01	RHN45120.1	69.164	694	202	6	220	901	10	703	0	910

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046565.01.T01	Q2V0Z5	33.607	244	100	6	1	195	1	231	1.72E-29	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046565.01.T01	A0A396GVR3	69.164	694	202	6	220	901	10	703	0.0	910

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001892.01	MsG0880046565.01	0.821223	4.526185e-53	3.660567e-50
MsG0180003786.01	MsG0880046565.01	0.802727	4.889690e-49	2.413048e-46
MsG0180003920.01	MsG0880046565.01	0.819597	1.068109e-52	8.256033e-50
MsG0180003943.01	MsG0880046565.01	0.824148	9.443633e-54	8.296021e-51
MsG0180004743.01	MsG0880046565.01	0.810645	1.039842e-50	6.302736e-48
MsG0180004754.01	MsG0880046565.01	0.803341	3.650445e-49	1.829817e-46
MsG0180005575.01	MsG0880046565.01	0.827358	1.634892e-54	1.574882e-51
MsG0280007452.01	MsG0880046565.01	0.843959	1.016584e-58	1.616812e-55
MsG0280007955.01	MsG0880046565.01	0.805379	1.373660e-49	7.256345e-47
MsG0280009794.01	MsG0880046565.01	0.802735	4.871991e-49	2.404767e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046565.01.T01	MTR_4g112830	76.829	246	13	1	1	202	4	249	1.19e-126	382
MsG0880046565.01.T01	MTR_4g112610	73.171	246	19	2	1	202	1	243	2.10e-105	326
MsG0880046565.01.T01	MTR_1g052045	55.714	350	75	3	262	611	1	270	2.19e-98	309
MsG0880046565.01.T01	MTR_6g053150	69.022	184	51	2	719	896	1	184	6.94e-72	238
MsG0880046565.01.T01	MTR_0439s0040	82.400	125	22	0	232	356	1	125	6.48e-71	230
MsG0880046565.01.T01	MTR_6g016455	73.723	137	35	1	222	357	13	149	2.01e-63	213
MsG0880046565.01.T01	MTR_6g039030	63.429	175	58	2	685	853	23	197	3.88e-61	206
MsG0880046565.01.T01	MTR_1g057850	61.622	185	37	1	338	522	24	174	8.69e-60	215
MsG0880046565.01.T01	MTR_0003s0160	63.846	130	33	1	217	346	6	121	3.12e-51	176
MsG0880046565.01.T01	MTR_5g073300	43.231	229	78	3	243	471	34	210	1.19e-48	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046565.01.T01	AT5G35520	33.607	244	100	6	1	195	1	231	1.76e-30	120

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Find 164 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTCTTTGTACCAGA+AGG	0.534473	8:+74941246	MsG0880046565.01.T01:CDS
AAACATATGAAGATCAGCTC+AGG	0.548476	8:+74941004	MsG0880046565.01.T01:CDS
AAACATTCTTTGTACCAGAA+GGG	0.571723	8:+74941247	MsG0880046565.01.T01:CDS
AAATTATGAAGGGAGCAAGA+AGG	0.637480	8:+74939997	MsG0880046565.01.T01:CDS
AACATTCTTTGTACCAGAAG+GGG	0.557216	8:+74941248	MsG0880046565.01.T01:CDS
AAGAACAACGACAGAGGAAT+TGG	0.358240	8:+74941156	MsG0880046565.01.T01:CDS
AAGATCCCAACATCTCACAC+AGG	0.719465	8:+74935690	MsG0880046565.01.T01:CDS
AAGATGCAAAGGTAGCTGTT+GGG	0.620398	8:+74940731	MsG0880046565.01.T01:CDS
AAGCTTCTGAACAAGGACTT+AGG	0.472327	8:+74940962	MsG0880046565.01.T01:CDS
AAGGATTGACAACAATAAAA+TGG	0.285180	8:+74937105	MsG0880046565.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATTCTTTGTACCAGA+AGG	+	Chr8:74941246-74941265	MsG0880046565.01.T01:CDS	30.0%
AAACACAACAAAAGGATTAG+TGG	+	Chr8:74938602-74938621	MsG0880046565.01.T01:intron	30.0%
AAACATTCTTTGTACCAGAA+GGG	+	Chr8:74941247-74941266	MsG0880046565.01.T01:CDS	30.0%
AACACTTGATATACAATCAG+AGG	-	Chr8:74939132-74939151	None:intergenic	30.0%
AAGAAATTCATGCATTAGAG+AGG	+	Chr8:74936562-74936581	MsG0880046565.01.T01:intron	30.0%
AATCTTCAAGAGCAATTTCA+TGG	-	Chr8:74941080-74941099	None:intergenic	30.0%
ACAGCAAAAATCAACTCTAT+TGG	+	Chr8:74940933-74940952	MsG0880046565.01.T01:CDS	30.0%
ACATAAAAAACCCAGATATG+CGG	+	Chr8:74936045-74936064	MsG0880046565.01.T01:intron	30.0%
ATATGTAAAGGGAAAGTTGA+AGG	+	Chr8:74937694-74937713	MsG0880046565.01.T01:intron	30.0%
ATATGTTGTTCCTTTGGATA+AGG	+	Chr8:74938790-74938809	MsG0880046565.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	74935438	74941689	74935438	ID=MsG0880046565.01;Name=MsG0880046565.01
Chr8	mRNA	74935438	74941689	74935438	ID=MsG0880046565.01.T01;Parent=MsG0880046565.01;Name=MsG0880046565.01.T01;_AED=0.35;_eAED=0.44;_QI=0\|0\|0\|1\|1\|1\|7\|0\|901
Chr8	exon	74935438	74935571	74935438	ID=MsG0880046565.01.T01:exon:31363;Parent=MsG0880046565.01.T01
Chr8	exon	74935654	74935711	74935654	ID=MsG0880046565.01.T01:exon:31364;Parent=MsG0880046565.01.T01
Chr8	exon	74935827	74935952	74935827	ID=MsG0880046565.01.T01:exon:31365;Parent=MsG0880046565.01.T01
Chr8	exon	74936331	74936423	74936331	ID=MsG0880046565.01.T01:exon:31366;Parent=MsG0880046565.01.T01
Chr8	exon	74937019	74937154	74937019	ID=MsG0880046565.01.T01:exon:31367;Parent=MsG0880046565.01.T01
Chr8	exon	74937245	74937302	74937245	ID=MsG0880046565.01.T01:exon:31368;Parent=MsG0880046565.01.T01
Chr8	exon	74939589	74941689	74939589	ID=MsG0880046565.01.T01:exon:31369;Parent=MsG0880046565.01.T01
Chr8	CDS	74935438	74935571	74935438	ID=MsG0880046565.01.T01:cds;Parent=MsG0880046565.01.T01
Chr8	CDS	74935654	74935711	74935654	ID=MsG0880046565.01.T01:cds;Parent=MsG0880046565.01.T01
Chr8	CDS	74935827	74935952	74935827	ID=MsG0880046565.01.T01:cds;Parent=MsG0880046565.01.T01
Chr8	CDS	74936331	74936423	74936331	ID=MsG0880046565.01.T01:cds;Parent=MsG0880046565.01.T01
Chr8	CDS	74937019	74937154	74937019	ID=MsG0880046565.01.T01:cds;Parent=MsG0880046565.01.T01
Chr8	CDS	74937245	74937302	74937245	ID=MsG0880046565.01.T01:cds;Parent=MsG0880046565.01.T01
Chr8	CDS	74939589	74941689	74939589	ID=MsG0880046565.01.T01:cds;Parent=MsG0880046565.01.T01

Gene Sequence

>MsG0880046565.01.T01

ATGGAAGGAAGCATGAGCAGAGAGAGCGACGCTGTTTTCGAATCGGTGATGAATCTGAATCCACAACTCTTCTTCAACGAAGTTCTCAACACTGTTGATGATTTCGTCCTCGATACTTTCGATTTCTACTTCCAGGAAGCATCCACCAAGCTCAATGCGGAAGCTACTCAAAGATCCCAACATCTCACACAGGGTGTTGATTGCATTCGTCAAAAGGTTCAATCTGTTTTGGATCAAAAGCTCGCTGTTTGGGAAAAATACTGCCTTTATCATTGTTTTTCTCTTCCCGAAGGTTTTCAATTGCCAAACACTCTCAATGGTGAAACAAATGAGAATGATGTTGATCCTGGTTCTACTTCCGATCTGGAATTAGATGCGCAGCTAAAATCACTGAGGAAAAAACTAGCTGAGATCATGACAACTGCCTCAGAACTTCGAATGAAGATGGGAAAGCTTAACACCAACTTGATTGAAGAGACAGGAAAAGTGAAAGCAAAAAGGATTGACAACAATAAAATGGACATTTCTGCTATATATGCTTCCAAAGGCGTATCTAATACGAAATTCGAAGATCTTCAAGAATTTGTAACTCTTATGAAGAGCACTCAAAGATCTGAGAAAAACATGTCTACTCCTCCTCCTACTGGTCCTAGTGATACTAGCTATAAACATGTCTCACATGATTATAGTGATAGTAAGAAATCCAGTGTTGGAAAAGTTCCAAAGTTCAATGGAGATGCTGAAGAGTTCTCTTGGTGGAAGACCAACTTTTACAGTTACATCATGAGCCTGGATGAAGAATTATGGGATATTCTGGAAGATGGTGTTGGTGATTTAGTCCTTGATGAAGAAGGAGCTGCTGTGGATAGAAAGAAACATACTCCAGAACTGAGGAAACTTTACAAGAAGCATCATATTATCAGAGAAGCCCTTGTCACTGCCATACCCAAAGCAGAATATATGAAGATGAGTGACAAATCCACTGCTAAAGCTATGTTTGCTTCTCTCTGTTCAAATTATGAAGGGAGCAAGAAGGTCAAAGAAGCAAAGGCTCTCCTGCTTGTACATCAGTATGAGTTATTCAAGATGAAGGATGATGAAACTATTGAGGAGATGTACTCAAGGTTTCAAACCTTAGTTTCTGGGCTACAGATTCTAAAGAAGAGCTATGTTGCTTCTGATCATGTAAGCAAGATACTCAGAAGCTTACCTGCCAGATGGAGACCAAAAGTGACTGCCATTGAGGAAGCTAAAGATTTAAACACTTTAAGTGTCGAAGATCTTGTTAGTTCTCTCAAAGTTCATGAGTTAAGTCTTAATGAACATGAGTCTACTAAGAAGAGTAAATCAATAGCTCTTCCATCCAAAGGCAAGTCATCAAAAGCTCTCAAAGTGGTTGAATCTGAAGAGGAAGAACAGTCAAGTTCAGATTCTGAACCAGATGCTGCTGAAATGGCCATGCTCTCAAACAGACTTCAATATCTGGCCAAGAAGAACAGAAAGTTTCTCGCCAAAAGGGGTAACTCCAGAAGCTCAAGGAAAGAAGATCAGAAGGGATGCTTCAACTGTAAGAAGCCAGGTCACTTCATTGCTGAATGCCCTGATCTTCAAAGAGAAAAGTCAAAGGACAAGTCAAAGAGGTCTACATTCAAACCAAGCAAACTCAAGAAGCAGATTAAGCAGAGTTTAATGGCAACCTGGGATGATTTGGGTAGTGAATCTGGATCTGATAAAGAGGAAGCTGATGAAGATGCAAAGGTAGCTGTTGGGTTGGTAGCAACAGCAACTTCAGAAGCTGGATCAGATTCAGACTCAGAAGATGAAAACGAGGTATATTCCAAAATTCCCAGAAATGAACTTGTTGAGTCACTTAAAGAACTTCTTACACATTTTGAAGTAAGAACCAATGAGTTGAAGGATTTAAAAGAAAAATATGCTGATTTGGTACAACAGCAAAAATCAACTCTATTGGATCTGAAAGCTTCTGAACAAGGACTTAGGGGCTTTGACTTCATGTGTAAAACATATGAAGATCAGCTCAGGTTCTTATGTCAGAAGCTACAAGAAAAGTGTAATGAAAAACCTTTAAGTAACCATGAAATTGCTCTTGAAGATTTTATTATATCTGGCATTGACAGAAGCAGAGTGGCTTCTATGATTTATAGCATTTACAAGAACAACGACAGAGGAATTGGTTTTCCAGAAGTGAAACTTGAGAAAACCAATCTAAAATCTTGTTGTGAATGCATCAAGGAAGGTCTGAAAACATTCTTTGTACCAGAAGGGGCTGAGTTGGAAACTGTTGTTCAATCAGAACCTGAAGCTTCTAGTCCTAAGGCTAAGATTACTTCAAAGCCAAAGAACTCTAAGTCAAAGGCTATGATCAAATCTGATTCCAAGACTTCAAAGGTCAGGATCCTGAAAAGATCAGAACCTATTCCTCAGAGTCTGGTGAAACCAAAATCTGGGGTTCTGAAGTCTAAGTTTCAGAAGAAGACAGTTACTGCTTCTGAAGTACCAAAACCTAAGGTGATGGTTAATCAGAAGCAACCCAACTCACAGCACAAGGTACAAGAAGTGAAGAGTAAAGCCTTAAGTACTAACCTTCCAGGACCCATAGAACAATGGGTACCTAAATCTAAAAATGTCAATGATGCAGGTATGTCTAAGAGCAGTGCCAAAGCAAAGATCATGGTACCTAGATAG

Protein sequence

>MsG0880046565.01.T01

MEGSMSRESDAVFESVMNLNPQLFFNEVLNTVDDFVLDTFDFYFQEASTKLNAEATQRSQHLTQGVDCIRQKVQSVLDQKLAVWEKYCLYHCFSLPEGFQLPNTLNGETNENDVDPGSTSDLELDAQLKSLRKKLAEIMTTASELRMKMGKLNTNLIEETGKVKAKRIDNNKMDISAIYASKGVSNTKFEDLQEFVTLMKSTQRSEKNMSTPPPTGPSDTSYKHVSHDYSDSKKSSVGKVPKFNGDAEEFSWWKTNFYSYIMSLDEELWDILEDGVGDLVLDEEGAAVDRKKHTPELRKLYKKHHIIREALVTAIPKAEYMKMSDKSTAKAMFASLCSNYEGSKKVKEAKALLLVHQYELFKMKDDETIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPARWRPKVTAIEEAKDLNTLSVEDLVSSLKVHELSLNEHESTKKSKSIALPSKGKSSKALKVVESEEEEQSSSDSEPDAAEMAMLSNRLQYLAKKNRKFLAKRGNSRSSRKEDQKGCFNCKKPGHFIAECPDLQREKSKDKSKRSTFKPSKLKKQIKQSLMATWDDLGSESGSDKEEADEDAKVAVGLVATATSEAGSDSDSEDENEVYSKIPRNELVESLKELLTHFEVRTNELKDLKEKYADLVQQQKSTLLDLKASEQGLRGFDFMCKTYEDQLRFLCQKLQEKCNEKPLSNHEIALEDFIISGIDRSRVASMIYSIYKNNDRGIGFPEVKLEKTNLKSCCECIKEGLKTFFVPEGAELETVVQSEPEASSPKAKITSKPKNSKSKAMIKSDSKTSKVRILKRSEPIPQSLVKPKSGVLKSKFQKKTVTASEVPKPKVMVNQKQPNSQHKVQEVKSKALSTNLPGPIEQWVPKSKNVNDAGMSKSSAKAKIMVPR*