AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0864150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864150 MtrunA17_Chr1g0188261 94.301 386 12 2 6 391 4 379 0.0 749
Msa0864150 MtrunA17_Chr1g0210231 53.582 349 148 4 31 375 63 401 1.71e-117 357
Msa0864150 MtrunA17_Chr8g0360481 54.747 316 140 2 58 372 67 380 1.40e-116 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864150 AT1G33290.1 72.554 368 96 2 23 388 11 375 0.0 548
Msa0864150 AT1G33290.3 79.734 301 61 0 88 388 1 301 0.0 506
Msa0864150 AT3G10420.1 56.962 316 133 2 58 372 96 409 1.76e-118 355
Msa0864150 AT3G10420.2 56.962 316 133 2 58 372 96 409 1.99e-117 357
Msa0864150 AT1G73170.1 51.622 339 160 3 56 392 78 414 5.72e-116 352
Msa0864150 AT1G73170.3 51.622 339 160 3 56 392 78 414 6.90e-116 352
Msa0864150 AT1G73170.2 56.089 271 117 2 124 392 16 286 1.39e-100 309
Msa0864150 AT1G33290.2 67.299 211 64 2 23 231 11 218 1.88e-93 283
Msa0864150 AT1G33290.2 77.381 84 19 0 305 388 216 299 4.80e-39 142
Msa0864150 AT1G73170.4 47.857 140 71 2 255 392 1 140 4.89e-33 128

Find 105 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGAGCAGTTGGAGATTT+TGG 0.126961 5_4:+64277040 Msa0864150:CDS
TCATCAGGTTATATTGGATT+TGG 0.200322 5_4:+64276674 Msa0864150:intron
ACCTAACCGCCCTCAACTTT+TGG 0.250887 5_4:+64276469 Msa0864150:CDS
GAGCGAGGCATCATGCTTAT+AGG 0.265973 5_4:+64278280 Msa0864150:CDS
CCTCAGAATTTCTTAGATAA+TGG 0.274877 5_4:-64276737 None:intergenic
ATCACCTCCAATTTCATTAC+TGG 0.299857 5_4:-64278089 None:intergenic
GTTGATACCAGTAATGAAAT+TGG 0.304856 5_4:+64278082 Msa0864150:CDS
CATCAGGTTATATTGGATTT+GGG 0.311825 5_4:+64276675 Msa0864150:intron
TGGGTTTATAAATTATATTA+TGG 0.317072 5_4:-64280684 None:intergenic
GTTTATGATCTGCTTCAATA+TGG 0.323340 5_4:+64277187 Msa0864150:CDS
ATCACGCTATGTTGCATTGA+TGG 0.341246 5_4:-64278166 None:intergenic
TTGCCTAGATACCGCGCTTC+AGG 0.341778 5_4:-64276705 None:intergenic
CGACCTCCAAGCTCTCTTAC+AGG 0.348222 5_4:+64276342 Msa0864150:CDS
TTTCCTGAAGCGCGGTATCT+AGG 0.359773 5_4:+64276702 Msa0864150:CDS
AGTAGGAATGGTGGCATTGT+TGG 0.363900 5_4:+64277118 Msa0864150:CDS
AACACAATTTACAAAATGAA+TGG 0.363945 5_4:-64280704 None:intergenic
GATCATAAACCATGTCAATA+TGG 0.372234 5_4:-64277174 None:intergenic
AGCGAGGCATCATGCTTATA+GGG 0.403823 5_4:+64278281 Msa0864150:CDS
AGGGGAACTGGGGATAAGGG+TGG 0.406703 5_4:+64276140 Msa0864150:five_prime_UTR
TGCACAGAATATCAGCAATA+AGG 0.410002 5_4:+64277095 Msa0864150:CDS
AAAAGGGGAACTGGGGATAA+GGG 0.412843 5_4:+64276137 Msa0864150:five_prime_UTR
GACAAACCTAGGTGTTAGTA+TGG 0.422069 5_4:-64280826 None:intergenic
CGGCATAGCATTTGAATTTG+AGG 0.430174 5_4:-64276267 None:intergenic
GGCATGTTGGTCATGTTTGA+TGG 0.431863 5_4:+64276192 Msa0864150:CDS
ACACAATTTACAAAATGAAT+GGG 0.435255 5_4:-64280703 None:intergenic
TTGGTTTGACGTGTCGGATT+GGG 0.436479 5_4:+64277137 Msa0864150:CDS
CATTTGCTTTATTAGATTGG+TGG 0.439996 5_4:+64278863 Msa0864150:intron
AATATTCCTCATGCAGCAAT+AGG 0.447097 5_4:+64278115 Msa0864150:CDS
ATACTAACACCTAGGTTTGT+CGG 0.449041 5_4:+64280828 Msa0864150:three_prime_UTR
GTAGTACCTGTAAGAGAGCT+TGG 0.449576 5_4:-64276348 None:intergenic
TATAAATTATATTATGGAAA+GGG 0.452150 5_4:-64280678 None:intergenic
GATAATAGAGCTGGTATTGA+AGG 0.452494 5_4:+64277067 Msa0864150:CDS
GGCATAGCATTTGAATTTGA+GGG 0.454237 5_4:-64276266 None:intergenic
AGGCAAGACCCCACAGGTTG+AGG 0.471366 5_4:+64279735 Msa0864150:CDS
CGGATTGGGAGGGCTGTCAC+TGG 0.472439 5_4:+64277151 Msa0864150:CDS
ACACTACTGGGTTACACATC+AGG 0.473781 5_4:+64279000 Msa0864150:CDS
GATTCTTCCAGGCCTGGGGT+TGG 0.476303 5_4:+64277896 Msa0864150:intron
TACTAACACCTAGGTTTGTC+GGG 0.487669 5_4:+64280829 Msa0864150:three_prime_UTR
GTTGGTTTGACGTGTCGGAT+TGG 0.489931 5_4:+64277136 Msa0864150:CDS
GAACACTGTGACTGTGACTC+TGG 0.496455 5_4:-64276304 None:intergenic
TCCAAAAGTTGAGGGCGGTT+AGG 0.499259 5_4:-64276470 None:intergenic
AGATGAGAGATAGACACTAC+TGG 0.502286 5_4:+64278987 Msa0864150:CDS
AGTAATGAAATTGGAGGTGA+TGG 0.508241 5_4:+64278091 Msa0864150:CDS
GCATTGTTGGTTTGACGTGT+CGG 0.509058 5_4:+64277131 Msa0864150:CDS
GTTTGACGTGTCGGATTGGG+AGG 0.510749 5_4:+64277140 Msa0864150:CDS
GACCTACCTCCAAAAGTTGA+GGG 0.510772 5_4:-64276478 None:intergenic
GATACCGCGCTTCAGGAAAA+CGG 0.511616 5_4:-64276698 None:intergenic
CCTAGGTGTTAGTATGGTAA+TGG 0.511636 5_4:-64280820 None:intergenic
TGGAATTGAAAGTGTTACTC+TGG 0.516865 5_4:+64278883 Msa0864150:CDS
GTGATTATAGTAGATGAGAT+TGG 0.517092 5_4:+64278220 Msa0864150:CDS
CAACAGCAACAACAGCAGCA+TGG 0.523227 5_4:+64276224 Msa0864150:CDS
TCATCTACTATAATCACCTC+AGG 0.528346 5_4:-64278214 None:intergenic
GAATATGCTGAAGGAGCAGT+TGG 0.530400 5_4:+64277031 Msa0864150:CDS
TTATAAATTATATTATGGAA+AGG 0.537273 5_4:-64280679 None:intergenic
ACAGTAGTCTTGCCAACCCC+AGG 0.537874 5_4:-64277908 None:intergenic
TGTGACTGTGACTCTGGCTG+TGG 0.538250 5_4:-64276298 None:intergenic
GCTATGTTGCATTGATGGCT+CGG 0.540454 5_4:-64278161 None:intergenic
TCAATCAAGAAATCAAATGT+TGG 0.540516 5_4:-64278965 None:intergenic
CTAGGTAACAGTGAGAGAGT+TGG 0.544848 5_4:+64277009 Msa0864150:intron
AAAGTTGAGGGCGGTTAGGT+TGG 0.545084 5_4:-64276466 None:intergenic
TTTGGGAAGGATAATAGAGC+TGG 0.546805 5_4:+64277058 Msa0864150:CDS
AAATTATATTATGGAAAGGG+AGG 0.547372 5_4:-64280675 None:intergenic
ATGCTTATAGGGACTGCTCA+TGG 0.547544 5_4:+64278292 Msa0864150:CDS
AGGTGGTGCACGTAGAATGC+AGG 0.554707 5_4:+64278135 Msa0864150:CDS
TTTGGATTCTTCCAGGCCTG+GGG 0.555222 5_4:+64277892 Msa0864150:intron
GCAACATAGCGTGATGATTG+AGG 0.555819 5_4:+64278174 Msa0864150:CDS
GAATCCTACGCTCTCTGACC+TGG 0.561221 5_4:+64278339 Msa0864150:CDS
TGCCTCGCTCAGCAATCGAC+CGG 0.568637 5_4:-64278267 None:intergenic
AGCGTAGATATATTGCTTCG+AGG 0.569413 5_4:+64279715 Msa0864150:CDS
GAATATCAGCAATAAGGAGT+AGG 0.577619 5_4:+64277101 Msa0864150:CDS
TGCCGGTCGATTGCTGAGCG+AGG 0.579543 5_4:+64278265 Msa0864150:CDS
GCTTCGAGGCAAGACCCCAC+AGG 0.579998 5_4:+64279729 Msa0864150:CDS
CATTTGAATTTGAGGGTCGG+TGG 0.585953 5_4:-64276259 None:intergenic
GGGGAACTGGGGATAAGGGT+GGG 0.586739 5_4:+64276141 Msa0864150:five_prime_UTR
GGACCTACCTCCAAAAGTTG+AGG 0.588490 5_4:-64276479 None:intergenic
AAGCTGAAGCTCATGCATGC+CGG 0.588992 5_4:+64278248 Msa0864150:CDS
TGTCACTGGCCATATTGACA+TGG 0.589779 5_4:+64277165 Msa0864150:CDS
TTTGACGTGTCGGATTGGGA+GGG 0.591021 5_4:+64277141 Msa0864150:CDS
ATCAAGAAATCAAATGTTGG+AGG 0.591943 5_4:-64278962 None:intergenic
CTCTGGCTGTGGCTGAGTCG+CGG 0.594373 5_4:-64276287 None:intergenic
TCAGCAATAAGGAGTAGGAA+TGG 0.597931 5_4:+64277106 Msa0864150:CDS
GAAGAATTACCTCAACCTGT+GGG 0.599084 5_4:-64279744 None:intergenic
TAGCATTTGAATTTGAGGGT+CGG 0.608467 5_4:-64276262 None:intergenic
GTACCTGTAAGAGAGCTTGG+AGG 0.612753 5_4:-64276345 None:intergenic
AGAGAGTTGGAATATGCTGA+AGG 0.615898 5_4:+64277022 Msa0864150:CDS
CCATTACCATACTAACACCT+AGG 0.616662 5_4:+64280820 Msa0864150:three_prime_UTR
GTCAGAAGACTATTCTTGAG+AGG 0.618967 5_4:+64278933 Msa0864150:CDS
CTGCAAATGCAATGGCATGT+TGG 0.621228 5_4:+64276179 Msa0864150:CDS
GATGAGAGATAGACACTACT+GGG 0.625526 5_4:+64278988 Msa0864150:CDS
AGATTGTGATGCAAATCTGA+AGG 0.626064 5_4:-64276437 None:intergenic
ATTCCTCATGCAGCAATAGG+TGG 0.626244 5_4:+64278118 Msa0864150:CDS
AATGATAGCTGCAAATGCAA+TGG 0.628631 5_4:+64276171 Msa0864150:exon
CCATTATCTAAGAAATTCTG+AGG 0.637235 5_4:+64276737 Msa0864150:CDS
GCGCGGTATCTAGGCAAACA+CGG 0.645389 5_4:+64276711 Msa0864150:CDS
AGATGAATTTCACAAAAGAG+TGG 0.647161 5_4:+64277958 Msa0864150:CDS
TGAAGAATTACCTCAACCTG+TGG 0.649387 5_4:-64279745 None:intergenic
GCACCACCTATTGCTGCATG+AGG 0.660141 5_4:-64278121 None:intergenic
GGAATTGAAAGTGTTACTCT+GGG 0.661020 5_4:+64278884 Msa0864150:CDS
GCAATAAGGAGTAGGAATGG+TGG 0.666850 5_4:+64277109 Msa0864150:CDS
GATACCAGTAATGAAATTGG+AGG 0.667560 5_4:+64278085 Msa0864150:CDS
CGAACCAGGTCAGAGAGCGT+AGG 0.667831 5_4:-64278343 None:intergenic
AAGAATTACCTCAACCTGTG+GGG 0.683693 5_4:-64279743 None:intergenic
GAGAGATAATGCACACACAG+AGG 0.702429 5_4:-64280877 None:intergenic
AGTAGAAAATCATATGCCTG+AGG 0.712015 5_4:+64278198 Msa0864150:CDS
CTACCTCCAAAAGTTGAGGG+CGG 0.712694 5_4:-64276475 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAATCATAAATTATTAAA+AGG + chr5_4:64277808-64277827 Msa0864150:intron 10.0%
!! TATAAATTATATTATGGAAA+GGG - chr5_4:64280681-64280700 None:intergenic 10.0%
!! TTATAAATTATATTATGGAA+AGG - chr5_4:64280682-64280701 None:intergenic 10.0%
!!! TGTTTTAAATTGTTTATATA+TGG - chr5_4:64280777-64280796 None:intergenic 10.0%
!! TAAAACTAAATAAGAAAAGT+GGG - chr5_4:64276906-64276925 None:intergenic 15.0%
!!! CAATTTTATCATCTTATATT+TGG + chr5_4:64277363-64277382 Msa0864150:intron 15.0%
!!! TTATGATTCTATTTTGTTAT+TGG - chr5_4:64277799-64277818 None:intergenic 15.0%
!! AAACCATAATAAATTCATAA+AGG - chr5_4:64278603-64278622 None:intergenic 15.0%
!!! TTGAATTTTATTATTGTAAC+AGG + chr5_4:64279239-64279258 Msa0864150:intron 15.0%
!! AAAAATTAGTACAATTATCA+GGG - chr5_4:64279401-64279420 None:intergenic 15.0%
!! TAAAAATTAGTACAATTATC+AGG - chr5_4:64279402-64279421 None:intergenic 15.0%
!!! GTAATACTTTTCATTTATTT+TGG + chr5_4:64279862-64279881 Msa0864150:intron 15.0%
!! AACATAAATCTTCATATAAT+AGG - chr5_4:64280326-64280345 None:intergenic 15.0%
!!! GTTATAATTTTAACTTTCTA+GGG - chr5_4:64280481-64280500 None:intergenic 15.0%
!!! TGTTATAATTTTAACTTTCT+AGG - chr5_4:64280482-64280501 None:intergenic 15.0%
!! TGGGTTTATAAATTATATTA+TGG - chr5_4:64280687-64280706 None:intergenic 15.0%
!! AAAAAAGAAAGTTGTAAGAA+AGG - chr5_4:64276398-64276417 None:intergenic 20.0%
!! ACAAAGAGAGATAAATAATA+GGG - chr5_4:64276503-64276522 None:intergenic 20.0%
!! AACAAAGAGAGATAAATAAT+AGG - chr5_4:64276504-64276523 None:intergenic 20.0%
!! TATAGTATAGTATACTATGT+CGG - chr5_4:64276626-64276645 None:intergenic 20.0%
!! TCTAACTCATTATTACAAAA+CGG - chr5_4:64276819-64276838 None:intergenic 20.0%
!! CTAAAACTAAATAAGAAAAG+TGG - chr5_4:64276907-64276926 None:intergenic 20.0%
!!! TAAACTAAGCTTTAGAAATT+AGG - chr5_4:64277264-64277283 None:intergenic 20.0%
!! GCTGTTAATTGTAATATATT+TGG + chr5_4:64277444-64277463 Msa0864150:intron 20.0%
!!! ATTAAATCTGTTTTATCTTG+TGG - chr5_4:64277552-64277571 None:intergenic 20.0%
!! TACCATTTATAATAGATCAT+GGG - chr5_4:64277743-64277762 None:intergenic 20.0%
!! TTACCATTTATAATAGATCA+TGG - chr5_4:64277744-64277763 None:intergenic 20.0%
!! TAGAATGAATTCTTTCAAAT+TGG + chr5_4:64278049-64278068 Msa0864150:intron 20.0%
!! AGAATGAATTCTTTCAAATT+GGG + chr5_4:64278050-64278069 Msa0864150:intron 20.0%
!!! GGTAACTATATCTTATTTTA+TGG + chr5_4:64278672-64278691 Msa0864150:intron 20.0%
!! ATGTATGTCAAATATGAAAA+TGG - chr5_4:64279168-64279187 None:intergenic 20.0%
!! TTTCATATTTGACATACATT+TGG + chr5_4:64279169-64279188 Msa0864150:intron 20.0%
!! ACAATGTTATTAACAGAAAA+CGG - chr5_4:64279373-64279392 None:intergenic 20.0%
!! AATCAAATAGTCATTTCATT+TGG - chr5_4:64279928-64279947 None:intergenic 20.0%
!!! TGAAATGACTATTTGATTTT+TGG + chr5_4:64279930-64279949 Msa0864150:intron 20.0%
!!! TATTATTTCTCTTTTACGTT+TGG + chr5_4:64280386-64280405 Msa0864150:intron 20.0%
!! GAATTGATCATTAATACATT+GGG - chr5_4:64280511-64280530 None:intergenic 20.0%
!! TGAATTGATCATTAATACAT+TGG - chr5_4:64280512-64280531 None:intergenic 20.0%
!! ACACAATTTACAAAATGAAT+GGG - chr5_4:64280706-64280725 None:intergenic 20.0%
!! AACACAATTTACAAAATGAA+TGG - chr5_4:64280707-64280726 None:intergenic 20.0%
!!! GTGTTTTTTAAGACATTAAG+AGG + chr5_4:64276087-64276106 Msa0864150:five_prime_UTR 25.0%
! TATAACCTGATGAAAAATGA+AGG - chr5_4:64276667-64276686 None:intergenic 25.0%
!! CATTTTTCATCAGGTTATAT+TGG + chr5_4:64276668-64276687 Msa0864150:intron 25.0%
! ATAATAAAGAAGTGATGCAT+TGG - chr5_4:64276862-64276881 None:intergenic 25.0%
!! ATAATACTTCAAGTTCTAAC+CGG + chr5_4:64277283-64277302 Msa0864150:intron 25.0%
! TTATATTTGGTCTAAACATC+AGG + chr5_4:64277376-64277395 Msa0864150:intron 25.0%
! TGTAATATATTTGGTCTGTT+TGG + chr5_4:64277453-64277472 Msa0864150:intron 25.0%
!!! AAGCTGTTTTAACAAATTCT+CGG + chr5_4:64277660-64277679 Msa0864150:intron 25.0%
!!! TGATCTATAACACTACTTTT+AGG - chr5_4:64278021-64278040 None:intergenic 25.0%
! GGGAAAATCTTATAGATTAT+TGG - chr5_4:64278391-64278410 None:intergenic 25.0%
!!! ATCTCAACTTTTTAAAAAGG+GGG - chr5_4:64278413-64278432 None:intergenic 25.0%
!!! GATCTCAACTTTTTAAAAAG+GGG - chr5_4:64278414-64278433 None:intergenic 25.0%
!!! GGATCTCAACTTTTTAAAAA+GGG - chr5_4:64278415-64278434 None:intergenic 25.0%
! TCAACTGTGTTTAAAAGAAA+AGG + chr5_4:64278494-64278513 Msa0864150:intron 25.0%
!!! AATAAGCAACATATTGACTT+TGG - chr5_4:64278542-64278561 None:intergenic 25.0%
!! TCAATATGTTGCTTATTTCA+GGG + chr5_4:64278545-64278564 Msa0864150:intron 25.0%
! AGGCCTTTATGAATTTATTA+TGG + chr5_4:64278597-64278616 Msa0864150:intron 25.0%
! AATTTAATAACTCTAGTCAG+AGG + chr5_4:64278644-64278663 Msa0864150:intron 25.0%
!! AATGAGTGAAACAAATTTTC+AGG - chr5_4:64278732-64278751 None:intergenic 25.0%
! AATCTAATAAAGCAAATGGA+GGG - chr5_4:64278861-64278880 None:intergenic 25.0%
! TCAATCAAGAAATCAAATGT+TGG - chr5_4:64278968-64278987 None:intergenic 25.0%
!! ACATATTTACATCCTTTTAC+TGG - chr5_4:64279465-64279484 None:intergenic 25.0%
! AAAGGATGTAAATATGTCAT+TGG + chr5_4:64279468-64279487 Msa0864150:intron 25.0%
!!! GATTAGTTTTGTTGATTGTT+TGG + chr5_4:64279537-64279556 Msa0864150:intron 25.0%
! CACTTAAAAATTTAGTCTAG+TGG + chr5_4:64279566-64279585 Msa0864150:intron 25.0%
! TTATAAGCCAAAATATGAGT+TGG + chr5_4:64279642-64279661 Msa0864150:intron 25.0%
!! CATAAAACCAACTCATATTT+TGG - chr5_4:64279652-64279671 None:intergenic 25.0%
! GCATATCATTCTTGAAAATA+AGG - chr5_4:64279807-64279826 None:intergenic 25.0%
!!! CTTTTCATTTATTTTGGTTG+TGG + chr5_4:64279868-64279887 Msa0864150:intron 25.0%
!! GGTATAAACTTATACTTTTG+TGG - chr5_4:64280020-64280039 None:intergenic 25.0%
! TTTACAGTCATTGCAAATTA+GGG - chr5_4:64280156-64280175 None:intergenic 25.0%
!! TTTTACAGTCATTGCAAATT+AGG - chr5_4:64280157-64280176 None:intergenic 25.0%
!! AAACTTATTCCCTGATTTTA+CGG + chr5_4:64280205-64280224 Msa0864150:intron 25.0%
! ATATGAAGATTTATGTTCCA+AGG + chr5_4:64280329-64280348 Msa0864150:intron 25.0%
!! TTTTCTGGGTATATTATGAT+AGG - chr5_4:64280454-64280473 None:intergenic 25.0%
! AAAAAGAGATGAGAAATACA+AGG + chr5_4:64280604-64280623 Msa0864150:CDS 25.0%
! AAATTATATTATGGAAAGGG+AGG - chr5_4:64280678-64280697 None:intergenic 25.0%
GAAAGTTGTAAGAAAGGAAA+TGG - chr5_4:64276392-64276411 None:intergenic 30.0%
! AATTCAATGATGTGTTGTTG+CGG - chr5_4:64276579-64276598 None:intergenic 30.0%
!! TTGAACCTTCATTTTTCATC+AGG + chr5_4:64276659-64276678 Msa0864150:intron 30.0%
TCATCAGGTTATATTGGATT+TGG + chr5_4:64276674-64276693 Msa0864150:intron 30.0%
CATCAGGTTATATTGGATTT+GGG + chr5_4:64276675-64276694 Msa0864150:intron 30.0%
CCTCAGAATTTCTTAGATAA+TGG - chr5_4:64276740-64276759 None:intergenic 30.0%
CCATTATCTAAGAAATTCTG+AGG + chr5_4:64276737-64276756 Msa0864150:CDS 30.0%
!! AGAAATTCTGAGGTAAAAGT+AGG + chr5_4:64276747-64276766 Msa0864150:intron 30.0%
!!! AAACGGACTTTTTTAAGATG+TGG - chr5_4:64276802-64276821 None:intergenic 30.0%
AAAAAGAATGCTCTGTTCAA+AGG + chr5_4:64276947-64276966 Msa0864150:intron 30.0%
GATCATAAACCATGTCAATA+TGG - chr5_4:64277177-64277196 None:intergenic 30.0%
GTTTATGATCTGCTTCAATA+TGG + chr5_4:64277187-64277206 Msa0864150:CDS 30.0%
!! AGAGCATTTTATTTCTTGGA+AGG + chr5_4:64277212-64277231 Msa0864150:CDS 30.0%
ATATAGATGTGCATCATTCA+TGG + chr5_4:64277238-64277257 Msa0864150:intron 30.0%
! TTTTGTGTGTGTTAAAGACT+TGG + chr5_4:64277404-64277423 Msa0864150:intron 30.0%
AGCCCATGATCTATTATAAA+TGG + chr5_4:64277738-64277757 Msa0864150:intron 30.0%
TTCTTGCATCGCTTATAATT+TGG + chr5_4:64277874-64277893 Msa0864150:intron 30.0%
CTTATAATTTGGATTCTTCC+AGG + chr5_4:64277885-64277904 Msa0864150:intron 30.0%
AGATGAATTTCACAAAAGAG+TGG + chr5_4:64277958-64277977 Msa0864150:CDS 30.0%
TGAATTCTTTCAAATTGGGT+AGG + chr5_4:64278054-64278073 Msa0864150:intron 30.0%
GTTGATACCAGTAATGAAAT+TGG + chr5_4:64278082-64278101 Msa0864150:CDS 30.0%
GTGATTATAGTAGATGAGAT+TGG + chr5_4:64278220-64278239 Msa0864150:CDS 30.0%
TATGATAATCAAAACGAACC+AGG - chr5_4:64278360-64278379 None:intergenic 30.0%
!! TCTCAACTTTTTAAAAAGGG+GGG - chr5_4:64278412-64278431 None:intergenic 30.0%
!! GGGATCTCAACTTTTTAAAA+AGG - chr5_4:64278416-64278435 None:intergenic 30.0%
TAAATGACTCAATGAAGCTA+GGG - chr5_4:64278436-64278455 None:intergenic 30.0%
ATAAATGACTCAATGAAGCT+AGG - chr5_4:64278437-64278456 None:intergenic 30.0%
!!! GTAGTTGTATCGATTTTATG+TGG + chr5_4:64278516-64278535 Msa0864150:intron 30.0%
! GTCAATATGTTGCTTATTTC+AGG + chr5_4:64278544-64278563 Msa0864150:intron 30.0%
CAATCTAATAAAGCAAATGG+AGG - chr5_4:64278862-64278881 None:intergenic 30.0%
! CTCCATTTGCTTTATTAGAT+TGG + chr5_4:64278860-64278879 Msa0864150:intron 30.0%
CACCAATCTAATAAAGCAAA+TGG - chr5_4:64278865-64278884 None:intergenic 30.0%
! CATTTGCTTTATTAGATTGG+TGG + chr5_4:64278863-64278882 Msa0864150:intron 30.0%
ATCAAGAAATCAAATGTTGG+AGG - chr5_4:64278965-64278984 None:intergenic 30.0%
! ATTTGACATACATTTGGTGA+AGG + chr5_4:64279175-64279194 Msa0864150:intron 30.0%
! TTTGACATACATTTGGTGAA+GGG + chr5_4:64279176-64279195 Msa0864150:intron 30.0%
CCATCCATCATATTGTTATA+CGG + chr5_4:64279323-64279342 Msa0864150:intron 30.0%
TGTTATTAACAGAAAACGGT+GGG - chr5_4:64279369-64279388 None:intergenic 30.0%
ATGTTATTAACAGAAAACGG+TGG - chr5_4:64279370-64279389 None:intergenic 30.0%
ATATAGATGACAAACCATTG+TGG - chr5_4:64279438-64279457 None:intergenic 30.0%
! CAATGGTTTGTCATCTATAT+CGG + chr5_4:64279438-64279457 Msa0864150:intron 30.0%
! AATGGTTTGTCATCTATATC+GGG + chr5_4:64279439-64279458 Msa0864150:intron 30.0%
! AATCGTCTAAAATATGATGC+AGG - chr5_4:64279521-64279540 None:intergenic 30.0%
! TTAGTCTAGTGGAATTGTTT+TGG + chr5_4:64279577-64279596 Msa0864150:intron 30.0%
! CAATATATCTACGCTTTTGT+CGG - chr5_4:64279710-64279729 None:intergenic 30.0%
!!! GACTATTTGATTTTTGGTTG+AGG + chr5_4:64279936-64279955 Msa0864150:intron 30.0%
GTATAAGTTTATACCTAGCA+TGG + chr5_4:64280025-64280044 Msa0864150:intron 30.0%
TAATGTAATCCTAGTTTGGA+CGG - chr5_4:64280093-64280112 None:intergenic 30.0%
ACACTAATGTAATCCTAGTT+TGG - chr5_4:64280097-64280116 None:intergenic 30.0%
TTACAGTCATTGCAAATTAG+GGG - chr5_4:64280155-64280174 None:intergenic 30.0%
! AAATCAGGGAATAAGTTTTG+TGG - chr5_4:64280203-64280222 None:intergenic 30.0%
ATGTAACTTCCGTAAAATCA+GGG - chr5_4:64280217-64280236 None:intergenic 30.0%
TATGTAACTTCCGTAAAATC+AGG - chr5_4:64280218-64280237 None:intergenic 30.0%
TGCTTTCATTAACTTCACAT+TGG + chr5_4:64280277-64280296 Msa0864150:intron 30.0%
GCTTTCATTAACTTCACATT+GGG + chr5_4:64280278-64280297 Msa0864150:intron 30.0%
! TTTGGTTCATAAATATGCTC+TGG + chr5_4:64280404-64280423 Msa0864150:intron 30.0%
ATAAATATGCTCTGGTCATA+TGG + chr5_4:64280412-64280431 Msa0864150:intron 30.0%
TCATAATATACCCAGAAAAG+TGG + chr5_4:64280455-64280474 Msa0864150:intron 30.0%
TGACTATTACCCGTGAAAAA+AGG + chr5_4:64276120-64276139 Msa0864150:five_prime_UTR 35.0%
GACTATTACCCGTGAAAAAA+GGG + chr5_4:64276121-64276140 Msa0864150:five_prime_UTR 35.0%
ACTATTACCCGTGAAAAAAG+GGG + chr5_4:64276122-64276141 Msa0864150:five_prime_UTR 35.0%
AATGATAGCTGCAAATGCAA+TGG + chr5_4:64276171-64276190 Msa0864150:exon 35.0%
TAGCATTTGAATTTGAGGGT+CGG - chr5_4:64276265-64276284 None:intergenic 35.0%
GGCATAGCATTTGAATTTGA+GGG - chr5_4:64276269-64276288 None:intergenic 35.0%
AGAAAGGAAATGGTTGAGTA+TGG - chr5_4:64276382-64276401 None:intergenic 35.0%
AGATTGTGATGCAAATCTGA+AGG - chr5_4:64276440-64276459 None:intergenic 35.0%
GCTCTTCATAAACTCTAATC+CGG - chr5_4:64276773-64276792 None:intergenic 35.0%
TTGTGATATGATCTCATGTG+TGG + chr5_4:64276974-64276993 Msa0864150:intron 35.0%
! GATAATAGAGCTGGTATTGA+AGG + chr5_4:64277067-64277086 Msa0864150:CDS 35.0%
TGCACAGAATATCAGCAATA+AGG + chr5_4:64277095-64277114 Msa0864150:CDS 35.0%
GAATATCAGCAATAAGGAGT+AGG + chr5_4:64277101-64277120 Msa0864150:CDS 35.0%
!!! GGCAAGAGCATTTTATTTCT+TGG + chr5_4:64277208-64277227 Msa0864150:CDS 35.0%
! CCGATTTCATTTCAAGTATC+CGG - chr5_4:64277305-64277324 None:intergenic 35.0%
CCGGATACTTGAAATGAAAT+CGG + chr5_4:64277302-64277321 Msa0864150:intron 35.0%
GATACCAGTAATGAAATTGG+AGG + chr5_4:64278085-64278104 Msa0864150:CDS 35.0%
ATCACCTCCAATTTCATTAC+TGG - chr5_4:64278092-64278111 None:intergenic 35.0%
AGTAATGAAATTGGAGGTGA+TGG + chr5_4:64278091-64278110 Msa0864150:CDS 35.0%
AATATTCCTCATGCAGCAAT+AGG + chr5_4:64278115-64278134 Msa0864150:CDS 35.0%
AGTAGAAAATCATATGCCTG+AGG + chr5_4:64278198-64278217 Msa0864150:CDS 35.0%
TCATCTACTATAATCACCTC+AGG - chr5_4:64278217-64278236 None:intergenic 35.0%
!! CTCAACTTTTTAAAAAGGGG+GGG - chr5_4:64278411-64278430 None:intergenic 35.0%
TTGCTTATTTCAGGGTCTAA+AGG + chr5_4:64278553-64278572 Msa0864150:intron 35.0%
TTGTTTCACTCATTCAGTTG+AGG + chr5_4:64278738-64278757 Msa0864150:intron 35.0%
TTAAAGACATGCTTGATGTG+TGG + chr5_4:64278789-64278808 Msa0864150:intron 35.0%
!! TGGAATTGAAAGTGTTACTC+TGG + chr5_4:64278883-64278902 Msa0864150:CDS 35.0%
!! GGAATTGAAAGTGTTACTCT+GGG + chr5_4:64278884-64278903 Msa0864150:CDS 35.0%
AATTAGTAACAAAGAGACCG+TGG + chr5_4:64279126-64279145 Msa0864150:intron 35.0%
GACTATCCAATTATTCACCA+CGG - chr5_4:64279146-64279165 None:intergenic 35.0%
CTTCTGGTAATAGCTAGTAA+AGG + chr5_4:64279199-64279218 Msa0864150:intron 35.0%
! CCGTATAACAATATGATGGA+TGG - chr5_4:64279326-64279345 None:intergenic 35.0%
TCAGCCGTATAACAATATGA+TGG - chr5_4:64279330-64279349 None:intergenic 35.0%
!! AAAAAAAAGTGCTGCCACAA+TGG + chr5_4:64279421-64279440 Msa0864150:intron 35.0%
TGGTTGAGGTTTAGATGAAA+AGG + chr5_4:64279950-64279969 Msa0864150:intron 35.0%
AAGTTTATACCTAGCATGGT+TGG + chr5_4:64280029-64280048 Msa0864150:intron 35.0%
AATGTAATCCTAGTTTGGAC+GGG - chr5_4:64280092-64280111 None:intergenic 35.0%
ACTAGGATTACATTAGTGTG+TGG + chr5_4:64280098-64280117 Msa0864150:intron 35.0%
! AGCATACATGTTGCATGTTT+TGG - chr5_4:64280261-64280280 None:intergenic 35.0%
! TATGTTCCAAGGTTTAGAGT+TGG + chr5_4:64280340-64280359 Msa0864150:intron 35.0%
!! AGAGTTGGTGTGTGATAAAT+CGG + chr5_4:64280355-64280374 Msa0864150:intron 35.0%
!!! ATGTCTCGTAACTTTTTTGC+AGG + chr5_4:64280577-64280596 Msa0864150:intron 35.0%
ATACTAACACCTAGGTTTGT+CGG + chr5_4:64280828-64280847 Msa0864150:three_prime_UTR 35.0%
CGGCATAGCATTTGAATTTG+AGG - chr5_4:64276270-64276289 None:intergenic 40.0%
!! ATTCTGAGGTAAAAGTAGGC+CGG + chr5_4:64276751-64276770 Msa0864150:intron 40.0%
TGATATGATCTCATGTGTGG+AGG + chr5_4:64276977-64276996 Msa0864150:intron 40.0%
AGAGAGTTGGAATATGCTGA+AGG + chr5_4:64277022-64277041 Msa0864150:CDS 40.0%
! AAGGAGCAGTTGGAGATTTT+GGG + chr5_4:64277041-64277060 Msa0864150:CDS 40.0%
TTTGGGAAGGATAATAGAGC+TGG + chr5_4:64277058-64277077 Msa0864150:CDS 40.0%
TCAGCAATAAGGAGTAGGAA+TGG + chr5_4:64277106-64277125 Msa0864150:CDS 40.0%
! GTGTGTGTTAAAGACTTGGT+CGG + chr5_4:64277408-64277427 Msa0864150:intron 40.0%
ACAATTAACAGCGCCAAACA+TGG - chr5_4:64277436-64277455 None:intergenic 40.0%
ATCACGCTATGTTGCATTGA+TGG - chr5_4:64278169-64278188 None:intergenic 40.0%
! CTTCTGACATTTTCTTGCTC+TGG - chr5_4:64278921-64278940 None:intergenic 40.0%
GTCAGAAGACTATTCTTGAG+AGG + chr5_4:64278933-64278952 Msa0864150:CDS 40.0%
AGATGAGAGATAGACACTAC+TGG + chr5_4:64278987-64279006 Msa0864150:CDS 40.0%
GATGAGAGATAGACACTACT+GGG + chr5_4:64278988-64279007 Msa0864150:CDS 40.0%
AAGAGACCGTGGTGAATAAT+TGG + chr5_4:64279137-64279156 Msa0864150:intron 40.0%
ATCTATATCGGGCCAGTAAA+AGG + chr5_4:64279450-64279469 Msa0864150:intron 40.0%
TGGTCCTGAACTAAAAAGTG+AGG + chr5_4:64279597-64279616 Msa0864150:intron 40.0%
GGTCCTGAACTAAAAAGTGA+GGG + chr5_4:64279598-64279617 Msa0864150:intron 40.0%
!!! GTACCCTCACTTTTTAGTTC+AGG - chr5_4:64279604-64279623 None:intergenic 40.0%
AGCGTAGATATATTGCTTCG+AGG + chr5_4:64279715-64279734 Msa0864150:CDS 40.0%
AAGAATTACCTCAACCTGTG+GGG - chr5_4:64279746-64279765 None:intergenic 40.0%
GAAGAATTACCTCAACCTGT+GGG - chr5_4:64279747-64279766 None:intergenic 40.0%
TGAAGAATTACCTCAACCTG+TGG - chr5_4:64279748-64279767 None:intergenic 40.0%
!! GGGGTTCTAGGAAATATAGA+TGG - chr5_4:64280136-64280155 None:intergenic 40.0%
CATTGCAAATTAGGGGTTCT+AGG - chr5_4:64280148-64280167 None:intergenic 40.0%
GTGTGTGATAAATCGGAGTA+TGG + chr5_4:64280362-64280381 Msa0864150:intron 40.0%
CCTAGGTGTTAGTATGGTAA+TGG - chr5_4:64280823-64280842 None:intergenic 40.0%
CCATTACCATACTAACACCT+AGG + chr5_4:64280820-64280839 Msa0864150:three_prime_UTR 40.0%
GACAAACCTAGGTGTTAGTA+TGG - chr5_4:64280829-64280848 None:intergenic 40.0%
TACTAACACCTAGGTTTGTC+GGG + chr5_4:64280829-64280848 Msa0864150:three_prime_UTR 40.0%
AAAAAGGGGAACTGGGGATA+AGG + chr5_4:64276136-64276155 Msa0864150:five_prime_UTR 45.0%
AAAAGGGGAACTGGGGATAA+GGG + chr5_4:64276137-64276156 Msa0864150:five_prime_UTR 45.0%
CTGCAAATGCAATGGCATGT+TGG + chr5_4:64276179-64276198 Msa0864150:CDS 45.0%
GGCATGTTGGTCATGTTTGA+TGG + chr5_4:64276192-64276211 Msa0864150:CDS 45.0%
CATTTGAATTTGAGGGTCGG+TGG - chr5_4:64276262-64276281 None:intergenic 45.0%
GTAGTACCTGTAAGAGAGCT+TGG - chr5_4:64276351-64276370 None:intergenic 45.0%
GACCTACCTCCAAAAGTTGA+GGG - chr5_4:64276481-64276500 None:intergenic 45.0%
CTAGGTAACAGTGAGAGAGT+TGG + chr5_4:64277009-64277028 Msa0864150:intron 45.0%
GAATATGCTGAAGGAGCAGT+TGG + chr5_4:64277031-64277050 Msa0864150:CDS 45.0%
! GAAGGAGCAGTTGGAGATTT+TGG + chr5_4:64277040-64277059 Msa0864150:CDS 45.0%
!! AGCAGTTGGAGATTTTGGGA+AGG + chr5_4:64277045-64277064 Msa0864150:CDS 45.0%
GCAATAAGGAGTAGGAATGG+TGG + chr5_4:64277109-64277128 Msa0864150:CDS 45.0%
AGTAGGAATGGTGGCATTGT+TGG + chr5_4:64277118-64277137 Msa0864150:CDS 45.0%
!! GCATTGTTGGTTTGACGTGT+CGG + chr5_4:64277131-64277150 Msa0864150:CDS 45.0%
! TTGGTTTGACGTGTCGGATT+GGG + chr5_4:64277137-64277156 Msa0864150:CDS 45.0%
TGTCACTGGCCATATTGACA+TGG + chr5_4:64277165-64277184 Msa0864150:CDS 45.0%
AATTTGGATTCTTCCAGGCC+TGG + chr5_4:64277890-64277909 Msa0864150:intron 45.0%
ATTTGGATTCTTCCAGGCCT+GGG + chr5_4:64277891-64277910 Msa0864150:intron 45.0%
ATTCCTCATGCAGCAATAGG+TGG + chr5_4:64278118-64278137 Msa0864150:CDS 45.0%
! GCTATGTTGCATTGATGGCT+CGG - chr5_4:64278164-64278183 None:intergenic 45.0%
GCAACATAGCGTGATGATTG+AGG + chr5_4:64278174-64278193 Msa0864150:CDS 45.0%
! AGCGAGGCATCATGCTTATA+GGG + chr5_4:64278281-64278300 Msa0864150:CDS 45.0%
ATGCTTATAGGGACTGCTCA+TGG + chr5_4:64278292-64278311 Msa0864150:CDS 45.0%
TCTAAAGGCCTGCTTATACC+AGG + chr5_4:64278568-64278587 Msa0864150:intron 45.0%
CTAAAGGCCTGCTTATACCA+GGG + chr5_4:64278569-64278588 Msa0864150:intron 45.0%
CTTTAGACCCTGGTATAAGC+AGG - chr5_4:64278579-64278598 None:intergenic 45.0%
CTGCTTATACCAGGGTCTAA+AGG + chr5_4:64278577-64278596 Msa0864150:intron 45.0%
TCATAAAGGCCTTTAGACCC+TGG - chr5_4:64278589-64278608 None:intergenic 45.0%
TAACTCTAGTCAGAGGATGC+TGG + chr5_4:64278651-64278670 Msa0864150:intron 45.0%
ACACTACTGGGTTACACATC+AGG + chr5_4:64279000-64279019 Msa0864150:CDS 45.0%
! TACATTTGGTGAAGGGCTTC+TGG + chr5_4:64279183-64279202 Msa0864150:intron 45.0%
CAGAAAACGGTGGGATGATA+TGG - chr5_4:64279360-64279379 None:intergenic 45.0%
!! CATTGGCTCAAAGCTCAATG+TGG + chr5_4:64279485-64279504 Msa0864150:intron 45.0%
AGGAAAAGACCAACCATGCT+AGG - chr5_4:64280041-64280060 None:intergenic 45.0%
!!! CATGGTTGGTCTTTTCCTCA+TGG + chr5_4:64280043-64280062 Msa0864150:intron 45.0%
GACGGGAAGAATGAGAATTC+GGG - chr5_4:64280075-64280094 None:intergenic 45.0%
GGACGGGAAGAATGAGAATT+CGG - chr5_4:64280076-64280095 None:intergenic 45.0%
TCATTCTTCCCGTCCAAACT+AGG + chr5_4:64280081-64280100 Msa0864150:intron 45.0%
CACACACCAACTCTAAACCT+TGG - chr5_4:64280349-64280368 None:intergenic 45.0%
!!! CTTTCTAGGGCCACTTTTCT+GGG - chr5_4:64280468-64280487 None:intergenic 45.0%
!!! ACTTTCTAGGGCCACTTTTC+TGG - chr5_4:64280469-64280488 None:intergenic 45.0%
! CATTTTGTCCCGACAAACCT+AGG - chr5_4:64280840-64280859 None:intergenic 45.0%
GAGAGATAATGCACACACAG+AGG - chr5_4:64280880-64280899 None:intergenic 45.0%
ACCCGTGAAAAAAGGGGAAC+TGG + chr5_4:64276128-64276147 Msa0864150:five_prime_UTR 50.0%
!!! CCCAGTTCCCCTTTTTTCAC+GGG - chr5_4:64276132-64276151 None:intergenic 50.0%
CCCGTGAAAAAAGGGGAACT+GGG + chr5_4:64276129-64276148 Msa0864150:five_prime_UTR 50.0%
!!! CCCCAGTTCCCCTTTTTTCA+CGG - chr5_4:64276133-64276152 None:intergenic 50.0%
CCGTGAAAAAAGGGGAACTG+GGG + chr5_4:64276130-64276149 Msa0864150:five_prime_UTR 50.0%
CAACAGCAACAACAGCAGCA+TGG + chr5_4:64276224-64276243 Msa0864150:CDS 50.0%
GAACACTGTGACTGTGACTC+TGG - chr5_4:64276307-64276326 None:intergenic 50.0%
GTACCTGTAAGAGAGCTTGG+AGG - chr5_4:64276348-64276367 None:intergenic 50.0%
AAAGTTGAGGGCGGTTAGGT+TGG - chr5_4:64276469-64276488 None:intergenic 50.0%
! ACCTAACCGCCCTCAACTTT+TGG + chr5_4:64276469-64276488 Msa0864150:CDS 50.0%
TCCAAAAGTTGAGGGCGGTT+AGG - chr5_4:64276473-64276492 None:intergenic 50.0%
! TAACCGCCCTCAACTTTTGG+AGG + chr5_4:64276472-64276491 Msa0864150:CDS 50.0%
CTACCTCCAAAAGTTGAGGG+CGG - chr5_4:64276478-64276497 None:intergenic 50.0%
GGACCTACCTCCAAAAGTTG+AGG - chr5_4:64276482-64276501 None:intergenic 50.0%
GATACCGCGCTTCAGGAAAA+CGG - chr5_4:64276701-64276720 None:intergenic 50.0%
TTTCCTGAAGCGCGGTATCT+AGG + chr5_4:64276702-64276721 Msa0864150:CDS 50.0%
GTGTGGAGGAATGTGTAGCT+AGG + chr5_4:64276991-64277010 Msa0864150:intron 50.0%
!! GTTGGTTTGACGTGTCGGAT+TGG + chr5_4:64277136-64277155 Msa0864150:CDS 50.0%
! TTTGACGTGTCGGATTGGGA+GGG + chr5_4:64277141-64277160 Msa0864150:CDS 50.0%
! GACTTGGTCGGTTCCATGTT+TGG + chr5_4:64277420-64277439 Msa0864150:intron 50.0%
TTTGGATTCTTCCAGGCCTG+GGG + chr5_4:64277892-64277911 Msa0864150:intron 50.0%
AAGCTGAAGCTCATGCATGC+CGG + chr5_4:64278248-64278267 Msa0864150:CDS 50.0%
! GAGCGAGGCATCATGCTTAT+AGG + chr5_4:64278280-64278299 Msa0864150:CDS 50.0%
GAATTCGGGCAAAAGCCATG+AGG - chr5_4:64280061-64280080 None:intergenic 50.0%
TGTGACTGTGACTCTGGCTG+TGG - chr5_4:64276301-64276320 None:intergenic 55.0%
CGACCTCCAAGCTCTCTTAC+AGG + chr5_4:64276342-64276361 Msa0864150:CDS 55.0%
!! CGCCCTCAACTTTTGGAGGT+AGG + chr5_4:64276476-64276495 Msa0864150:intron 55.0%
TTGCCTAGATACCGCGCTTC+AGG - chr5_4:64276708-64276727 None:intergenic 55.0%
GCGCGGTATCTAGGCAAACA+CGG + chr5_4:64276711-64276730 Msa0864150:CDS 55.0%
! GTTTGACGTGTCGGATTGGG+AGG + chr5_4:64277140-64277159 Msa0864150:CDS 55.0%
! ACAGTAGTCTTGCCAACCCC+AGG - chr5_4:64277911-64277930 None:intergenic 55.0%
GCACCACCTATTGCTGCATG+AGG - chr5_4:64278124-64278143 None:intergenic 55.0%
AGGTGGTGCACGTAGAATGC+AGG + chr5_4:64278135-64278154 Msa0864150:CDS 55.0%
GAATCCTACGCTCTCTGACC+TGG + chr5_4:64278339-64278358 Msa0864150:CDS 55.0%
AGGGGAACTGGGGATAAGGG+TGG + chr5_4:64276140-64276159 Msa0864150:five_prime_UTR 60.0%
GGGGAACTGGGGATAAGGGT+GGG + chr5_4:64276141-64276160 Msa0864150:five_prime_UTR 60.0%
!! TGGGCCGTTTTCCTGAAGCG+CGG + chr5_4:64276694-64276713 Msa0864150:CDS 60.0%
GATTCTTCCAGGCCTGGGGT+TGG + chr5_4:64277896-64277915 Msa0864150:intron 60.0%
TGCCTCGCTCAGCAATCGAC+CGG - chr5_4:64278270-64278289 None:intergenic 60.0%
! CGAACCAGGTCAGAGAGCGT+AGG - chr5_4:64278346-64278365 None:intergenic 60.0%
AGGCAAGACCCCACAGGTTG+AGG + chr5_4:64279735-64279754 Msa0864150:CDS 60.0%
CTCTGGCTGTGGCTGAGTCG+CGG - chr5_4:64276290-64276309 None:intergenic 65.0%
! CGGATTGGGAGGGCTGTCAC+TGG + chr5_4:64277151-64277170 Msa0864150:CDS 65.0%
AGTCTTGCCAACCCCAGGCC+TGG - chr5_4:64277906-64277925 None:intergenic 65.0%
TGCCGGTCGATTGCTGAGCG+AGG + chr5_4:64278265-64278284 Msa0864150:CDS 65.0%
GCTTCGAGGCAAGACCCCAC+AGG + chr5_4:64279729-64279748 Msa0864150:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 64276087 64280919 64276087 ID=Msa0864150;Name=Msa0864150
chr5_4 mRNA 64276087 64280919 64276087 ID=Msa0864150-mRNA-1;Parent=Msa0864150;Name=Msa0864150-mRNA-1;_AED=0.10;_eAED=0.10;_QI=85|1|1|1|1|1|9|249|392
chr5_4 exon 64276087 64276363 64276087 ID=Msa0864150-mRNA-1:exon:20228;Parent=Msa0864150-mRNA-1
chr5_4 exon 64276431 64276493 64276431 ID=Msa0864150-mRNA-1:exon:20229;Parent=Msa0864150-mRNA-1
chr5_4 exon 64276681 64276758 64276681 ID=Msa0864150-mRNA-1:exon:20230;Parent=Msa0864150-mRNA-1
chr5_4 exon 64277013 64277233 64277013 ID=Msa0864150-mRNA-1:exon:20231;Parent=Msa0864150-mRNA-1
chr5_4 exon 64277907 64277979 64277907 ID=Msa0864150-mRNA-1:exon:20232;Parent=Msa0864150-mRNA-1
chr5_4 exon 64278076 64278360 64278076 ID=Msa0864150-mRNA-1:exon:20233;Parent=Msa0864150-mRNA-1
chr5_4 exon 64278878 64279021 64278878 ID=Msa0864150-mRNA-1:exon:20234;Parent=Msa0864150-mRNA-1
chr5_4 exon 64279706 64279756 64279706 ID=Msa0864150-mRNA-1:exon:20235;Parent=Msa0864150-mRNA-1
chr5_4 exon 64280599 64280919 64280599 ID=Msa0864150-mRNA-1:exon:20236;Parent=Msa0864150-mRNA-1
chr5_4 five_prime_UTR 64276087 64276171 64276087 ID=Msa0864150-mRNA-1:five_prime_utr;Parent=Msa0864150-mRNA-1
chr5_4 CDS 64276172 64276363 64276172 ID=Msa0864150-mRNA-1:cds;Parent=Msa0864150-mRNA-1
chr5_4 CDS 64276431 64276493 64276431 ID=Msa0864150-mRNA-1:cds;Parent=Msa0864150-mRNA-1
chr5_4 CDS 64276681 64276758 64276681 ID=Msa0864150-mRNA-1:cds;Parent=Msa0864150-mRNA-1
chr5_4 CDS 64277013 64277233 64277013 ID=Msa0864150-mRNA-1:cds;Parent=Msa0864150-mRNA-1
chr5_4 CDS 64277907 64277979 64277907 ID=Msa0864150-mRNA-1:cds;Parent=Msa0864150-mRNA-1
chr5_4 CDS 64278076 64278360 64278076 ID=Msa0864150-mRNA-1:cds;Parent=Msa0864150-mRNA-1
chr5_4 CDS 64278878 64279021 64278878 ID=Msa0864150-mRNA-1:cds;Parent=Msa0864150-mRNA-1
chr5_4 CDS 64279706 64279756 64279706 ID=Msa0864150-mRNA-1:cds;Parent=Msa0864150-mRNA-1
chr5_4 CDS 64280599 64280670 64280599 ID=Msa0864150-mRNA-1:cds;Parent=Msa0864150-mRNA-1
chr5_4 three_prime_UTR 64280671 64280919 64280671 ID=Msa0864150-mRNA-1:three_prime_utr;Parent=Msa0864150-mRNA-1
Gene Sequence

>Msa0864150

ATGATAGCTGCAAATGCAATGGCATGTTGGTCATGTTTGATGGCAGCAACAGCAACAGCAACAACAGCAGCATGGAAATTGAAGTCACCACCGACCCTCAAATTCAAATGCTATGCCGCGACTCAGCCACAGCCAGAGTCACAGTCACAGTGTTCTCTTGTGCACAACGACGACCTCCAAGCTCTCTTACAGATTCTTCCTTCAGATTTGCATCACAATCTAATCAACCAACCTAACCGCCCTCAACTTTTGGAGGTTATATTGGATTTGGGCCGTTTTCCTGAAGCGCGGTATCTAGGCAAACACGGAAACCATTATCTAAGAAATTCTGAGGTAACAGTGAGAGAGTTGGAATATGCTGAAGGAGCAGTTGGAGATTTTGGGAAGGATAATAGAGCTGGTATTGAAGGTACTTTGCACAGAATATCAGCAATAAGGAGTAGGAATGGTGGCATTGTTGGTTTGACGTGTCGGATTGGGAGGGCTGTCACTGGCCATATTGACATGGTTTATGATCTGCTTCAATATGGCAAGAGCATTTTATTTCTTGGAAGGCCTGGGGTTGGCAAGACTACTGTTATGAGAGAGATTGCTCGTGTTCTGTCAGATGAATTTCACAAAAGAGTGGTGATTGTTGATACCAGTAATGAAATTGGAGGTGATGGCAATATTCCTCATGCAGCAATAGGTGGTGCACGTAGAATGCAGGTATCCGAGCCATCAATGCAACATAGCGTGATGATTGAGGCAGTAGAAAATCATATGCCTGAGGTGATTATAGTAGATGAGATTGGCACAGAAGCTGAAGCTCATGCATGCCGGTCGATTGCTGAGCGAGGCATCATGCTTATAGGGACTGCTCATGGACAGCAAATTGAGAATGTCATGAAGAATCCTACGCTCTCTGACCTGATTGGTGGAATTGAAAGTGTTACTCTGGGAGACTACGAAGCCAGAGCAAGAAAATGTCAGAAGACTATTCTTGAGAGGAAAGCTCCTCCAACATTTGATTTCTTGATTGAGATGAGAGATAGACACTACTGGGTTACACATCAGACCGACAAAAGCGTAGATATATTGCTTCGAGGCAAGACCCCACAGGTTGAGGTAAGAAAAAGAGATGAGAAATACAAGGTTGTGATCGAAAAATCTAAAGCATATGATAAGTGTCAAATTTGA

Protein sequence

>Msa0864150

MIAANAMACWSCLMAATATATTAAWKLKSPPTLKFKCYAATQPQPESQSQCSLVHNDDLQALLQILPSDLHHNLINQPNRPQLLEVILDLGRFPEARYLGKHGNHYLRNSEVTVRELEYAEGAVGDFGKDNRAGIEGTLHRISAIRSRNGGIVGLTCRIGRAVTGHIDMVYDLLQYGKSILFLGRPGVGKTTVMREIARVLSDEFHKRVVIVDTSNEIGGDGNIPHAAIGGARRMQVSEPSMQHSVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGIMLIGTAHGQQIENVMKNPTLSDLIGGIESVTLGDYEARARKCQKTILERKAPPTFDFLIEMRDRHYWVTHQTDKSVDILLRGKTPQVEVRKRDEKYKVVIEKSKAYDKCQI*