AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139050 MtrunA17_Chr1g0188261 94.301 386 12 2 6 391 4 379 0.0 749
Msa0139050 MtrunA17_Chr1g0210231 53.582 349 148 4 31 375 63 401 1.71e-117 357
Msa0139050 MtrunA17_Chr8g0360481 54.747 316 140 2 58 372 67 380 1.40e-116 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139050 AT1G33290.1 72.554 368 96 2 23 388 11 375 0.0 548
Msa0139050 AT1G33290.3 79.734 301 61 0 88 388 1 301 0.0 506
Msa0139050 AT3G10420.1 56.962 316 133 2 58 372 96 409 1.76e-118 355
Msa0139050 AT3G10420.2 56.962 316 133 2 58 372 96 409 1.99e-117 357
Msa0139050 AT1G73170.1 51.622 339 160 3 56 392 78 414 5.72e-116 352
Msa0139050 AT1G73170.3 51.622 339 160 3 56 392 78 414 6.90e-116 352
Msa0139050 AT1G73170.2 56.089 271 117 2 124 392 16 286 1.39e-100 309
Msa0139050 AT1G33290.2 67.299 211 64 2 23 231 11 218 1.88e-93 283
Msa0139050 AT1G33290.2 77.381 84 19 0 305 388 216 299 4.80e-39 142
Msa0139050 AT1G73170.4 47.857 140 71 2 255 392 1 140 4.89e-33 128

Find 105 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGAGCAGTTGGAGATTT+TGG 0.126961 1_3:+72250392 Msa0139050:CDS
TCATCAGGTTATATTGGATT+TGG 0.200322 1_3:+72250026 Msa0139050:intron
ACCTAACCGCCCTCAACTTT+TGG 0.250887 1_3:+72249821 Msa0139050:CDS
GAGCGAGGCATCATGCTTAT+AGG 0.265973 1_3:+72251632 Msa0139050:CDS
CCTCAGAATTTCTTAGATAA+TGG 0.274877 1_3:-72250089 None:intergenic
ATCACCTCCAATTTCATTAC+TGG 0.299857 1_3:-72251441 None:intergenic
GTTGATACCAGTAATGAAAT+TGG 0.304856 1_3:+72251434 Msa0139050:CDS
CATCAGGTTATATTGGATTT+GGG 0.311825 1_3:+72250027 Msa0139050:intron
TGGGTTTATAAATTATATTA+TGG 0.317072 1_3:-72254036 None:intergenic
GTTTATGATCTGCTTCAATA+TGG 0.323340 1_3:+72250539 Msa0139050:CDS
ATCACGCTATGTTGCATTGA+TGG 0.341246 1_3:-72251518 None:intergenic
TTGCCTAGATACCGCGCTTC+AGG 0.341778 1_3:-72250057 None:intergenic
CGACCTCCAAGCTCTCTTAC+AGG 0.348222 1_3:+72249694 Msa0139050:CDS
TTTCCTGAAGCGCGGTATCT+AGG 0.359773 1_3:+72250054 Msa0139050:CDS
AGTAGGAATGGTGGCATTGT+TGG 0.363900 1_3:+72250470 Msa0139050:CDS
AACACAATTTACAAAATGAA+TGG 0.363945 1_3:-72254056 None:intergenic
GATCATAAACCATGTCAATA+TGG 0.372234 1_3:-72250526 None:intergenic
AGCGAGGCATCATGCTTATA+GGG 0.403823 1_3:+72251633 Msa0139050:CDS
AGGGGAACTGGGGATAAGGG+TGG 0.406703 1_3:+72249492 Msa0139050:five_prime_UTR
TGCACAGAATATCAGCAATA+AGG 0.410002 1_3:+72250447 Msa0139050:CDS
AAAAGGGGAACTGGGGATAA+GGG 0.412843 1_3:+72249489 Msa0139050:five_prime_UTR
GACAAACCTAGGTGTTAGTA+TGG 0.422069 1_3:-72254178 None:intergenic
CGGCATAGCATTTGAATTTG+AGG 0.430174 1_3:-72249619 None:intergenic
GGCATGTTGGTCATGTTTGA+TGG 0.431863 1_3:+72249544 Msa0139050:CDS
ACACAATTTACAAAATGAAT+GGG 0.435255 1_3:-72254055 None:intergenic
TTGGTTTGACGTGTCGGATT+GGG 0.436479 1_3:+72250489 Msa0139050:CDS
CATTTGCTTTATTAGATTGG+TGG 0.439996 1_3:+72252215 Msa0139050:intron
AATATTCCTCATGCAGCAAT+AGG 0.447097 1_3:+72251467 Msa0139050:CDS
ATACTAACACCTAGGTTTGT+CGG 0.449041 1_3:+72254180 Msa0139050:three_prime_UTR
GTAGTACCTGTAAGAGAGCT+TGG 0.449576 1_3:-72249700 None:intergenic
TATAAATTATATTATGGAAA+GGG 0.452150 1_3:-72254030 None:intergenic
GATAATAGAGCTGGTATTGA+AGG 0.452494 1_3:+72250419 Msa0139050:CDS
GGCATAGCATTTGAATTTGA+GGG 0.454237 1_3:-72249618 None:intergenic
AGGCAAGACCCCACAGGTTG+AGG 0.471366 1_3:+72253087 Msa0139050:CDS
CGGATTGGGAGGGCTGTCAC+TGG 0.472439 1_3:+72250503 Msa0139050:CDS
ACACTACTGGGTTACACATC+AGG 0.473781 1_3:+72252352 Msa0139050:CDS
GATTCTTCCAGGCCTGGGGT+TGG 0.476303 1_3:+72251248 Msa0139050:intron
TACTAACACCTAGGTTTGTC+GGG 0.487669 1_3:+72254181 Msa0139050:three_prime_UTR
GTTGGTTTGACGTGTCGGAT+TGG 0.489931 1_3:+72250488 Msa0139050:CDS
GAACACTGTGACTGTGACTC+TGG 0.496455 1_3:-72249656 None:intergenic
TCCAAAAGTTGAGGGCGGTT+AGG 0.499259 1_3:-72249822 None:intergenic
AGATGAGAGATAGACACTAC+TGG 0.502286 1_3:+72252339 Msa0139050:CDS
AGTAATGAAATTGGAGGTGA+TGG 0.508241 1_3:+72251443 Msa0139050:CDS
GCATTGTTGGTTTGACGTGT+CGG 0.509058 1_3:+72250483 Msa0139050:CDS
GTTTGACGTGTCGGATTGGG+AGG 0.510749 1_3:+72250492 Msa0139050:CDS
GACCTACCTCCAAAAGTTGA+GGG 0.510772 1_3:-72249830 None:intergenic
GATACCGCGCTTCAGGAAAA+CGG 0.511616 1_3:-72250050 None:intergenic
CCTAGGTGTTAGTATGGTAA+TGG 0.511636 1_3:-72254172 None:intergenic
TGGAATTGAAAGTGTTACTC+TGG 0.516865 1_3:+72252235 Msa0139050:CDS
GTGATTATAGTAGATGAGAT+TGG 0.517092 1_3:+72251572 Msa0139050:CDS
CAACAGCAACAACAGCAGCA+TGG 0.523227 1_3:+72249576 Msa0139050:CDS
TCATCTACTATAATCACCTC+AGG 0.528346 1_3:-72251566 None:intergenic
GAATATGCTGAAGGAGCAGT+TGG 0.530400 1_3:+72250383 Msa0139050:CDS
TTATAAATTATATTATGGAA+AGG 0.537273 1_3:-72254031 None:intergenic
ACAGTAGTCTTGCCAACCCC+AGG 0.537874 1_3:-72251260 None:intergenic
TGTGACTGTGACTCTGGCTG+TGG 0.538250 1_3:-72249650 None:intergenic
GCTATGTTGCATTGATGGCT+CGG 0.540454 1_3:-72251513 None:intergenic
TCAATCAAGAAATCAAATGT+TGG 0.540516 1_3:-72252317 None:intergenic
CTAGGTAACAGTGAGAGAGT+TGG 0.544848 1_3:+72250361 Msa0139050:intron
AAAGTTGAGGGCGGTTAGGT+TGG 0.545084 1_3:-72249818 None:intergenic
TTTGGGAAGGATAATAGAGC+TGG 0.546805 1_3:+72250410 Msa0139050:CDS
AAATTATATTATGGAAAGGG+AGG 0.547372 1_3:-72254027 None:intergenic
ATGCTTATAGGGACTGCTCA+TGG 0.547544 1_3:+72251644 Msa0139050:CDS
AGGTGGTGCACGTAGAATGC+AGG 0.554707 1_3:+72251487 Msa0139050:CDS
TTTGGATTCTTCCAGGCCTG+GGG 0.555222 1_3:+72251244 Msa0139050:intron
GCAACATAGCGTGATGATTG+AGG 0.555819 1_3:+72251526 Msa0139050:CDS
GAATCCTACGCTCTCTGACC+TGG 0.561221 1_3:+72251691 Msa0139050:CDS
TGCCTCGCTCAGCAATCGAC+CGG 0.568637 1_3:-72251619 None:intergenic
AGCGTAGATATATTGCTTCG+AGG 0.569413 1_3:+72253067 Msa0139050:CDS
GAATATCAGCAATAAGGAGT+AGG 0.577619 1_3:+72250453 Msa0139050:CDS
TGCCGGTCGATTGCTGAGCG+AGG 0.579543 1_3:+72251617 Msa0139050:CDS
GCTTCGAGGCAAGACCCCAC+AGG 0.579998 1_3:+72253081 Msa0139050:CDS
CATTTGAATTTGAGGGTCGG+TGG 0.585953 1_3:-72249611 None:intergenic
GGGGAACTGGGGATAAGGGT+GGG 0.586739 1_3:+72249493 Msa0139050:five_prime_UTR
GGACCTACCTCCAAAAGTTG+AGG 0.588490 1_3:-72249831 None:intergenic
AAGCTGAAGCTCATGCATGC+CGG 0.588992 1_3:+72251600 Msa0139050:CDS
TGTCACTGGCCATATTGACA+TGG 0.589779 1_3:+72250517 Msa0139050:CDS
TTTGACGTGTCGGATTGGGA+GGG 0.591021 1_3:+72250493 Msa0139050:CDS
ATCAAGAAATCAAATGTTGG+AGG 0.591943 1_3:-72252314 None:intergenic
CTCTGGCTGTGGCTGAGTCG+CGG 0.594373 1_3:-72249639 None:intergenic
TCAGCAATAAGGAGTAGGAA+TGG 0.597931 1_3:+72250458 Msa0139050:CDS
GAAGAATTACCTCAACCTGT+GGG 0.599084 1_3:-72253096 None:intergenic
TAGCATTTGAATTTGAGGGT+CGG 0.608467 1_3:-72249614 None:intergenic
GTACCTGTAAGAGAGCTTGG+AGG 0.612753 1_3:-72249697 None:intergenic
AGAGAGTTGGAATATGCTGA+AGG 0.615898 1_3:+72250374 Msa0139050:CDS
CCATTACCATACTAACACCT+AGG 0.616662 1_3:+72254172 Msa0139050:three_prime_UTR
GTCAGAAGACTATTCTTGAG+AGG 0.618967 1_3:+72252285 Msa0139050:CDS
CTGCAAATGCAATGGCATGT+TGG 0.621228 1_3:+72249531 Msa0139050:CDS
GATGAGAGATAGACACTACT+GGG 0.625526 1_3:+72252340 Msa0139050:CDS
AGATTGTGATGCAAATCTGA+AGG 0.626064 1_3:-72249789 None:intergenic
ATTCCTCATGCAGCAATAGG+TGG 0.626244 1_3:+72251470 Msa0139050:CDS
AATGATAGCTGCAAATGCAA+TGG 0.628631 1_3:+72249523 Msa0139050:exon
CCATTATCTAAGAAATTCTG+AGG 0.637235 1_3:+72250089 Msa0139050:CDS
GCGCGGTATCTAGGCAAACA+CGG 0.645389 1_3:+72250063 Msa0139050:CDS
AGATGAATTTCACAAAAGAG+TGG 0.647161 1_3:+72251310 Msa0139050:CDS
TGAAGAATTACCTCAACCTG+TGG 0.649387 1_3:-72253097 None:intergenic
GCACCACCTATTGCTGCATG+AGG 0.660141 1_3:-72251473 None:intergenic
GGAATTGAAAGTGTTACTCT+GGG 0.661020 1_3:+72252236 Msa0139050:CDS
GCAATAAGGAGTAGGAATGG+TGG 0.666850 1_3:+72250461 Msa0139050:CDS
GATACCAGTAATGAAATTGG+AGG 0.667560 1_3:+72251437 Msa0139050:CDS
CGAACCAGGTCAGAGAGCGT+AGG 0.667831 1_3:-72251695 None:intergenic
AAGAATTACCTCAACCTGTG+GGG 0.683693 1_3:-72253095 None:intergenic
GAGAGATAATGCACACACAG+AGG 0.702429 1_3:-72254229 None:intergenic
AGTAGAAAATCATATGCCTG+AGG 0.712015 1_3:+72251550 Msa0139050:CDS
CTACCTCCAAAAGTTGAGGG+CGG 0.712694 1_3:-72249827 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAATCATAAATTATTAAA+AGG + chr1_3:72251160-72251179 Msa0139050:intron 10.0%
!! TATAAATTATATTATGGAAA+GGG - chr1_3:72254033-72254052 None:intergenic 10.0%
!! TTATAAATTATATTATGGAA+AGG - chr1_3:72254034-72254053 None:intergenic 10.0%
!!! TGTTTTAAATTGTTTATATA+TGG - chr1_3:72254129-72254148 None:intergenic 10.0%
!! TAAAACTAAATAAGAAAAGT+GGG - chr1_3:72250258-72250277 None:intergenic 15.0%
!!! CAATTTTATCATCTTATATT+TGG + chr1_3:72250715-72250734 Msa0139050:intron 15.0%
!!! TTATGATTCTATTTTGTTAT+TGG - chr1_3:72251151-72251170 None:intergenic 15.0%
!! AAACCATAATAAATTCATAA+AGG - chr1_3:72251955-72251974 None:intergenic 15.0%
!!! TTGAATTTTATTATTGTAAC+AGG + chr1_3:72252591-72252610 Msa0139050:intron 15.0%
!! AAAAATTAGTACAATTATCA+GGG - chr1_3:72252753-72252772 None:intergenic 15.0%
!! TAAAAATTAGTACAATTATC+AGG - chr1_3:72252754-72252773 None:intergenic 15.0%
!!! GTAATACTTTTCATTTATTT+TGG + chr1_3:72253214-72253233 Msa0139050:intron 15.0%
!! AACATAAATCTTCATATAAT+AGG - chr1_3:72253678-72253697 None:intergenic 15.0%
!!! GTTATAATTTTAACTTTCTA+GGG - chr1_3:72253833-72253852 None:intergenic 15.0%
!!! TGTTATAATTTTAACTTTCT+AGG - chr1_3:72253834-72253853 None:intergenic 15.0%
!! TGGGTTTATAAATTATATTA+TGG - chr1_3:72254039-72254058 None:intergenic 15.0%
!! AAAAAAGAAAGTTGTAAGAA+AGG - chr1_3:72249750-72249769 None:intergenic 20.0%
!! ACAAAGAGAGATAAATAATA+GGG - chr1_3:72249855-72249874 None:intergenic 20.0%
!! AACAAAGAGAGATAAATAAT+AGG - chr1_3:72249856-72249875 None:intergenic 20.0%
!! TATAGTATAGTATACTATGT+CGG - chr1_3:72249978-72249997 None:intergenic 20.0%
!! TCTAACTCATTATTACAAAA+CGG - chr1_3:72250171-72250190 None:intergenic 20.0%
!! CTAAAACTAAATAAGAAAAG+TGG - chr1_3:72250259-72250278 None:intergenic 20.0%
!!! TAAACTAAGCTTTAGAAATT+AGG - chr1_3:72250616-72250635 None:intergenic 20.0%
!! GCTGTTAATTGTAATATATT+TGG + chr1_3:72250796-72250815 Msa0139050:intron 20.0%
!!! ATTAAATCTGTTTTATCTTG+TGG - chr1_3:72250904-72250923 None:intergenic 20.0%
!! TACCATTTATAATAGATCAT+GGG - chr1_3:72251095-72251114 None:intergenic 20.0%
!! TTACCATTTATAATAGATCA+TGG - chr1_3:72251096-72251115 None:intergenic 20.0%
!! TAGAATGAATTCTTTCAAAT+TGG + chr1_3:72251401-72251420 Msa0139050:intron 20.0%
!! AGAATGAATTCTTTCAAATT+GGG + chr1_3:72251402-72251421 Msa0139050:intron 20.0%
!!! GGTAACTATATCTTATTTTA+TGG + chr1_3:72252024-72252043 Msa0139050:intron 20.0%
!! ATGTATGTCAAATATGAAAA+TGG - chr1_3:72252520-72252539 None:intergenic 20.0%
!! TTTCATATTTGACATACATT+TGG + chr1_3:72252521-72252540 Msa0139050:intron 20.0%
!! ACAATGTTATTAACAGAAAA+CGG - chr1_3:72252725-72252744 None:intergenic 20.0%
!! AATCAAATAGTCATTTCATT+TGG - chr1_3:72253280-72253299 None:intergenic 20.0%
!!! TGAAATGACTATTTGATTTT+TGG + chr1_3:72253282-72253301 Msa0139050:intron 20.0%
!!! TATTATTTCTCTTTTACGTT+TGG + chr1_3:72253738-72253757 Msa0139050:intron 20.0%
!! GAATTGATCATTAATACATT+GGG - chr1_3:72253863-72253882 None:intergenic 20.0%
!! TGAATTGATCATTAATACAT+TGG - chr1_3:72253864-72253883 None:intergenic 20.0%
!! ACACAATTTACAAAATGAAT+GGG - chr1_3:72254058-72254077 None:intergenic 20.0%
!! AACACAATTTACAAAATGAA+TGG - chr1_3:72254059-72254078 None:intergenic 20.0%
!!! GTGTTTTTTAAGACATTAAG+AGG + chr1_3:72249439-72249458 Msa0139050:five_prime_UTR 25.0%
! TATAACCTGATGAAAAATGA+AGG - chr1_3:72250019-72250038 None:intergenic 25.0%
!! CATTTTTCATCAGGTTATAT+TGG + chr1_3:72250020-72250039 Msa0139050:intron 25.0%
! ATAATAAAGAAGTGATGCAT+TGG - chr1_3:72250214-72250233 None:intergenic 25.0%
!! ATAATACTTCAAGTTCTAAC+CGG + chr1_3:72250635-72250654 Msa0139050:intron 25.0%
! TTATATTTGGTCTAAACATC+AGG + chr1_3:72250728-72250747 Msa0139050:intron 25.0%
! TGTAATATATTTGGTCTGTT+TGG + chr1_3:72250805-72250824 Msa0139050:intron 25.0%
!!! AAGCTGTTTTAACAAATTCT+CGG + chr1_3:72251012-72251031 Msa0139050:intron 25.0%
!!! TGATCTATAACACTACTTTT+AGG - chr1_3:72251373-72251392 None:intergenic 25.0%
! GGGAAAATCTTATAGATTAT+TGG - chr1_3:72251743-72251762 None:intergenic 25.0%
!!! ATCTCAACTTTTTAAAAAGG+GGG - chr1_3:72251765-72251784 None:intergenic 25.0%
!!! GATCTCAACTTTTTAAAAAG+GGG - chr1_3:72251766-72251785 None:intergenic 25.0%
!!! GGATCTCAACTTTTTAAAAA+GGG - chr1_3:72251767-72251786 None:intergenic 25.0%
! TCAACTGTGTTTAAAAGAAA+AGG + chr1_3:72251846-72251865 Msa0139050:intron 25.0%
!!! AATAAGCAACATATTGACTT+TGG - chr1_3:72251894-72251913 None:intergenic 25.0%
!! TCAATATGTTGCTTATTTCA+GGG + chr1_3:72251897-72251916 Msa0139050:intron 25.0%
! AGGCCTTTATGAATTTATTA+TGG + chr1_3:72251949-72251968 Msa0139050:intron 25.0%
! AATTTAATAACTCTAGTCAG+AGG + chr1_3:72251996-72252015 Msa0139050:intron 25.0%
!! AATGAGTGAAACAAATTTTC+AGG - chr1_3:72252084-72252103 None:intergenic 25.0%
! AATCTAATAAAGCAAATGGA+GGG - chr1_3:72252213-72252232 None:intergenic 25.0%
! TCAATCAAGAAATCAAATGT+TGG - chr1_3:72252320-72252339 None:intergenic 25.0%
!! ACATATTTACATCCTTTTAC+TGG - chr1_3:72252817-72252836 None:intergenic 25.0%
! AAAGGATGTAAATATGTCAT+TGG + chr1_3:72252820-72252839 Msa0139050:intron 25.0%
!!! GATTAGTTTTGTTGATTGTT+TGG + chr1_3:72252889-72252908 Msa0139050:intron 25.0%
! CACTTAAAAATTTAGTCTAG+TGG + chr1_3:72252918-72252937 Msa0139050:intron 25.0%
! TTATAAGCCAAAATATGAGT+TGG + chr1_3:72252994-72253013 Msa0139050:intron 25.0%
!! CATAAAACCAACTCATATTT+TGG - chr1_3:72253004-72253023 None:intergenic 25.0%
! GCATATCATTCTTGAAAATA+AGG - chr1_3:72253159-72253178 None:intergenic 25.0%
!!! CTTTTCATTTATTTTGGTTG+TGG + chr1_3:72253220-72253239 Msa0139050:intron 25.0%
!! GGTATAAACTTATACTTTTG+TGG - chr1_3:72253372-72253391 None:intergenic 25.0%
! TTTACAGTCATTGCAAATTA+GGG - chr1_3:72253508-72253527 None:intergenic 25.0%
!! TTTTACAGTCATTGCAAATT+AGG - chr1_3:72253509-72253528 None:intergenic 25.0%
!! AAACTTATTCCCTGATTTTA+CGG + chr1_3:72253557-72253576 Msa0139050:intron 25.0%
! ATATGAAGATTTATGTTCCA+AGG + chr1_3:72253681-72253700 Msa0139050:intron 25.0%
!! TTTTCTGGGTATATTATGAT+AGG - chr1_3:72253806-72253825 None:intergenic 25.0%
! AAAAAGAGATGAGAAATACA+AGG + chr1_3:72253956-72253975 Msa0139050:CDS 25.0%
! AAATTATATTATGGAAAGGG+AGG - chr1_3:72254030-72254049 None:intergenic 25.0%
GAAAGTTGTAAGAAAGGAAA+TGG - chr1_3:72249744-72249763 None:intergenic 30.0%
! AATTCAATGATGTGTTGTTG+CGG - chr1_3:72249931-72249950 None:intergenic 30.0%
!! TTGAACCTTCATTTTTCATC+AGG + chr1_3:72250011-72250030 Msa0139050:intron 30.0%
TCATCAGGTTATATTGGATT+TGG + chr1_3:72250026-72250045 Msa0139050:intron 30.0%
CATCAGGTTATATTGGATTT+GGG + chr1_3:72250027-72250046 Msa0139050:intron 30.0%
CCTCAGAATTTCTTAGATAA+TGG - chr1_3:72250092-72250111 None:intergenic 30.0%
CCATTATCTAAGAAATTCTG+AGG + chr1_3:72250089-72250108 Msa0139050:CDS 30.0%
!! AGAAATTCTGAGGTAAAAGT+AGG + chr1_3:72250099-72250118 Msa0139050:intron 30.0%
!!! AAACGGACTTTTTTAAGATG+TGG - chr1_3:72250154-72250173 None:intergenic 30.0%
AAAAAGAATGCTCTGTTCAA+AGG + chr1_3:72250299-72250318 Msa0139050:intron 30.0%
GATCATAAACCATGTCAATA+TGG - chr1_3:72250529-72250548 None:intergenic 30.0%
GTTTATGATCTGCTTCAATA+TGG + chr1_3:72250539-72250558 Msa0139050:CDS 30.0%
!! AGAGCATTTTATTTCTTGGA+AGG + chr1_3:72250564-72250583 Msa0139050:CDS 30.0%
ATATAGATGTGCATCATTCA+TGG + chr1_3:72250590-72250609 Msa0139050:intron 30.0%
! TTTTGTGTGTGTTAAAGACT+TGG + chr1_3:72250756-72250775 Msa0139050:intron 30.0%
AGCCCATGATCTATTATAAA+TGG + chr1_3:72251090-72251109 Msa0139050:intron 30.0%
TTCTTGCATCGCTTATAATT+TGG + chr1_3:72251226-72251245 Msa0139050:intron 30.0%
CTTATAATTTGGATTCTTCC+AGG + chr1_3:72251237-72251256 Msa0139050:intron 30.0%
AGATGAATTTCACAAAAGAG+TGG + chr1_3:72251310-72251329 Msa0139050:CDS 30.0%
TGAATTCTTTCAAATTGGGT+AGG + chr1_3:72251406-72251425 Msa0139050:intron 30.0%
GTTGATACCAGTAATGAAAT+TGG + chr1_3:72251434-72251453 Msa0139050:CDS 30.0%
GTGATTATAGTAGATGAGAT+TGG + chr1_3:72251572-72251591 Msa0139050:CDS 30.0%
TATGATAATCAAAACGAACC+AGG - chr1_3:72251712-72251731 None:intergenic 30.0%
!! TCTCAACTTTTTAAAAAGGG+GGG - chr1_3:72251764-72251783 None:intergenic 30.0%
!! GGGATCTCAACTTTTTAAAA+AGG - chr1_3:72251768-72251787 None:intergenic 30.0%
TAAATGACTCAATGAAGCTA+GGG - chr1_3:72251788-72251807 None:intergenic 30.0%
ATAAATGACTCAATGAAGCT+AGG - chr1_3:72251789-72251808 None:intergenic 30.0%
!!! GTAGTTGTATCGATTTTATG+TGG + chr1_3:72251868-72251887 Msa0139050:intron 30.0%
! GTCAATATGTTGCTTATTTC+AGG + chr1_3:72251896-72251915 Msa0139050:intron 30.0%
CAATCTAATAAAGCAAATGG+AGG - chr1_3:72252214-72252233 None:intergenic 30.0%
! CTCCATTTGCTTTATTAGAT+TGG + chr1_3:72252212-72252231 Msa0139050:intron 30.0%
CACCAATCTAATAAAGCAAA+TGG - chr1_3:72252217-72252236 None:intergenic 30.0%
! CATTTGCTTTATTAGATTGG+TGG + chr1_3:72252215-72252234 Msa0139050:intron 30.0%
ATCAAGAAATCAAATGTTGG+AGG - chr1_3:72252317-72252336 None:intergenic 30.0%
! ATTTGACATACATTTGGTGA+AGG + chr1_3:72252527-72252546 Msa0139050:intron 30.0%
! TTTGACATACATTTGGTGAA+GGG + chr1_3:72252528-72252547 Msa0139050:intron 30.0%
CCATCCATCATATTGTTATA+CGG + chr1_3:72252675-72252694 Msa0139050:intron 30.0%
TGTTATTAACAGAAAACGGT+GGG - chr1_3:72252721-72252740 None:intergenic 30.0%
ATGTTATTAACAGAAAACGG+TGG - chr1_3:72252722-72252741 None:intergenic 30.0%
ATATAGATGACAAACCATTG+TGG - chr1_3:72252790-72252809 None:intergenic 30.0%
! CAATGGTTTGTCATCTATAT+CGG + chr1_3:72252790-72252809 Msa0139050:intron 30.0%
! AATGGTTTGTCATCTATATC+GGG + chr1_3:72252791-72252810 Msa0139050:intron 30.0%
! AATCGTCTAAAATATGATGC+AGG - chr1_3:72252873-72252892 None:intergenic 30.0%
! TTAGTCTAGTGGAATTGTTT+TGG + chr1_3:72252929-72252948 Msa0139050:intron 30.0%
! CAATATATCTACGCTTTTGT+CGG - chr1_3:72253062-72253081 None:intergenic 30.0%
!!! GACTATTTGATTTTTGGTTG+AGG + chr1_3:72253288-72253307 Msa0139050:intron 30.0%
GTATAAGTTTATACCTAGCA+TGG + chr1_3:72253377-72253396 Msa0139050:intron 30.0%
TAATGTAATCCTAGTTTGGA+CGG - chr1_3:72253445-72253464 None:intergenic 30.0%
ACACTAATGTAATCCTAGTT+TGG - chr1_3:72253449-72253468 None:intergenic 30.0%
TTACAGTCATTGCAAATTAG+GGG - chr1_3:72253507-72253526 None:intergenic 30.0%
! AAATCAGGGAATAAGTTTTG+TGG - chr1_3:72253555-72253574 None:intergenic 30.0%
ATGTAACTTCCGTAAAATCA+GGG - chr1_3:72253569-72253588 None:intergenic 30.0%
TATGTAACTTCCGTAAAATC+AGG - chr1_3:72253570-72253589 None:intergenic 30.0%
TGCTTTCATTAACTTCACAT+TGG + chr1_3:72253629-72253648 Msa0139050:intron 30.0%
GCTTTCATTAACTTCACATT+GGG + chr1_3:72253630-72253649 Msa0139050:intron 30.0%
! TTTGGTTCATAAATATGCTC+TGG + chr1_3:72253756-72253775 Msa0139050:intron 30.0%
ATAAATATGCTCTGGTCATA+TGG + chr1_3:72253764-72253783 Msa0139050:intron 30.0%
TCATAATATACCCAGAAAAG+TGG + chr1_3:72253807-72253826 Msa0139050:intron 30.0%
TGACTATTACCCGTGAAAAA+AGG + chr1_3:72249472-72249491 Msa0139050:five_prime_UTR 35.0%
GACTATTACCCGTGAAAAAA+GGG + chr1_3:72249473-72249492 Msa0139050:five_prime_UTR 35.0%
ACTATTACCCGTGAAAAAAG+GGG + chr1_3:72249474-72249493 Msa0139050:five_prime_UTR 35.0%
AATGATAGCTGCAAATGCAA+TGG + chr1_3:72249523-72249542 Msa0139050:exon 35.0%
TAGCATTTGAATTTGAGGGT+CGG - chr1_3:72249617-72249636 None:intergenic 35.0%
GGCATAGCATTTGAATTTGA+GGG - chr1_3:72249621-72249640 None:intergenic 35.0%
AGAAAGGAAATGGTTGAGTA+TGG - chr1_3:72249734-72249753 None:intergenic 35.0%
AGATTGTGATGCAAATCTGA+AGG - chr1_3:72249792-72249811 None:intergenic 35.0%
GCTCTTCATAAACTCTAATC+CGG - chr1_3:72250125-72250144 None:intergenic 35.0%
TTGTGATATGATCTCATGTG+TGG + chr1_3:72250326-72250345 Msa0139050:intron 35.0%
! GATAATAGAGCTGGTATTGA+AGG + chr1_3:72250419-72250438 Msa0139050:CDS 35.0%
TGCACAGAATATCAGCAATA+AGG + chr1_3:72250447-72250466 Msa0139050:CDS 35.0%
GAATATCAGCAATAAGGAGT+AGG + chr1_3:72250453-72250472 Msa0139050:CDS 35.0%
!!! GGCAAGAGCATTTTATTTCT+TGG + chr1_3:72250560-72250579 Msa0139050:CDS 35.0%
! CCGATTTCATTTCAAGTATC+CGG - chr1_3:72250657-72250676 None:intergenic 35.0%
CCGGATACTTGAAATGAAAT+CGG + chr1_3:72250654-72250673 Msa0139050:intron 35.0%
GATACCAGTAATGAAATTGG+AGG + chr1_3:72251437-72251456 Msa0139050:CDS 35.0%
ATCACCTCCAATTTCATTAC+TGG - chr1_3:72251444-72251463 None:intergenic 35.0%
AGTAATGAAATTGGAGGTGA+TGG + chr1_3:72251443-72251462 Msa0139050:CDS 35.0%
AATATTCCTCATGCAGCAAT+AGG + chr1_3:72251467-72251486 Msa0139050:CDS 35.0%
AGTAGAAAATCATATGCCTG+AGG + chr1_3:72251550-72251569 Msa0139050:CDS 35.0%
TCATCTACTATAATCACCTC+AGG - chr1_3:72251569-72251588 None:intergenic 35.0%
!! CTCAACTTTTTAAAAAGGGG+GGG - chr1_3:72251763-72251782 None:intergenic 35.0%
TTGCTTATTTCAGGGTCTAA+AGG + chr1_3:72251905-72251924 Msa0139050:intron 35.0%
TTGTTTCACTCATTCAGTTG+AGG + chr1_3:72252090-72252109 Msa0139050:intron 35.0%
TTAAAGACATGCTTGATGTG+TGG + chr1_3:72252141-72252160 Msa0139050:intron 35.0%
!! TGGAATTGAAAGTGTTACTC+TGG + chr1_3:72252235-72252254 Msa0139050:CDS 35.0%
!! GGAATTGAAAGTGTTACTCT+GGG + chr1_3:72252236-72252255 Msa0139050:CDS 35.0%
AATTAGTAACAAAGAGACCG+TGG + chr1_3:72252478-72252497 Msa0139050:intron 35.0%
GACTATCCAATTATTCACCA+CGG - chr1_3:72252498-72252517 None:intergenic 35.0%
CTTCTGGTAATAGCTAGTAA+AGG + chr1_3:72252551-72252570 Msa0139050:intron 35.0%
! CCGTATAACAATATGATGGA+TGG - chr1_3:72252678-72252697 None:intergenic 35.0%
TCAGCCGTATAACAATATGA+TGG - chr1_3:72252682-72252701 None:intergenic 35.0%
!! AAAAAAAAGTGCTGCCACAA+TGG + chr1_3:72252773-72252792 Msa0139050:intron 35.0%
TGGTTGAGGTTTAGATGAAA+AGG + chr1_3:72253302-72253321 Msa0139050:intron 35.0%
AAGTTTATACCTAGCATGGT+TGG + chr1_3:72253381-72253400 Msa0139050:intron 35.0%
AATGTAATCCTAGTTTGGAC+GGG - chr1_3:72253444-72253463 None:intergenic 35.0%
ACTAGGATTACATTAGTGTG+TGG + chr1_3:72253450-72253469 Msa0139050:intron 35.0%
! AGCATACATGTTGCATGTTT+TGG - chr1_3:72253613-72253632 None:intergenic 35.0%
! TATGTTCCAAGGTTTAGAGT+TGG + chr1_3:72253692-72253711 Msa0139050:intron 35.0%
!! AGAGTTGGTGTGTGATAAAT+CGG + chr1_3:72253707-72253726 Msa0139050:intron 35.0%
!!! ATGTCTCGTAACTTTTTTGC+AGG + chr1_3:72253929-72253948 Msa0139050:intron 35.0%
ATACTAACACCTAGGTTTGT+CGG + chr1_3:72254180-72254199 Msa0139050:three_prime_UTR 35.0%
CGGCATAGCATTTGAATTTG+AGG - chr1_3:72249622-72249641 None:intergenic 40.0%
!! ATTCTGAGGTAAAAGTAGGC+CGG + chr1_3:72250103-72250122 Msa0139050:intron 40.0%
TGATATGATCTCATGTGTGG+AGG + chr1_3:72250329-72250348 Msa0139050:intron 40.0%
AGAGAGTTGGAATATGCTGA+AGG + chr1_3:72250374-72250393 Msa0139050:CDS 40.0%
! AAGGAGCAGTTGGAGATTTT+GGG + chr1_3:72250393-72250412 Msa0139050:CDS 40.0%
TTTGGGAAGGATAATAGAGC+TGG + chr1_3:72250410-72250429 Msa0139050:CDS 40.0%
TCAGCAATAAGGAGTAGGAA+TGG + chr1_3:72250458-72250477 Msa0139050:CDS 40.0%
! GTGTGTGTTAAAGACTTGGT+CGG + chr1_3:72250760-72250779 Msa0139050:intron 40.0%
ACAATTAACAGCGCCAAACA+TGG - chr1_3:72250788-72250807 None:intergenic 40.0%
ATCACGCTATGTTGCATTGA+TGG - chr1_3:72251521-72251540 None:intergenic 40.0%
! CTTCTGACATTTTCTTGCTC+TGG - chr1_3:72252273-72252292 None:intergenic 40.0%
GTCAGAAGACTATTCTTGAG+AGG + chr1_3:72252285-72252304 Msa0139050:CDS 40.0%
AGATGAGAGATAGACACTAC+TGG + chr1_3:72252339-72252358 Msa0139050:CDS 40.0%
GATGAGAGATAGACACTACT+GGG + chr1_3:72252340-72252359 Msa0139050:CDS 40.0%
AAGAGACCGTGGTGAATAAT+TGG + chr1_3:72252489-72252508 Msa0139050:intron 40.0%
ATCTATATCGGGCCAGTAAA+AGG + chr1_3:72252802-72252821 Msa0139050:intron 40.0%
TGGTCCTGAACTAAAAAGTG+AGG + chr1_3:72252949-72252968 Msa0139050:intron 40.0%
GGTCCTGAACTAAAAAGTGA+GGG + chr1_3:72252950-72252969 Msa0139050:intron 40.0%
!!! GTACCCTCACTTTTTAGTTC+AGG - chr1_3:72252956-72252975 None:intergenic 40.0%
AGCGTAGATATATTGCTTCG+AGG + chr1_3:72253067-72253086 Msa0139050:CDS 40.0%
AAGAATTACCTCAACCTGTG+GGG - chr1_3:72253098-72253117 None:intergenic 40.0%
GAAGAATTACCTCAACCTGT+GGG - chr1_3:72253099-72253118 None:intergenic 40.0%
TGAAGAATTACCTCAACCTG+TGG - chr1_3:72253100-72253119 None:intergenic 40.0%
!! GGGGTTCTAGGAAATATAGA+TGG - chr1_3:72253488-72253507 None:intergenic 40.0%
CATTGCAAATTAGGGGTTCT+AGG - chr1_3:72253500-72253519 None:intergenic 40.0%
GTGTGTGATAAATCGGAGTA+TGG + chr1_3:72253714-72253733 Msa0139050:intron 40.0%
CCTAGGTGTTAGTATGGTAA+TGG - chr1_3:72254175-72254194 None:intergenic 40.0%
CCATTACCATACTAACACCT+AGG + chr1_3:72254172-72254191 Msa0139050:three_prime_UTR 40.0%
GACAAACCTAGGTGTTAGTA+TGG - chr1_3:72254181-72254200 None:intergenic 40.0%
TACTAACACCTAGGTTTGTC+GGG + chr1_3:72254181-72254200 Msa0139050:three_prime_UTR 40.0%
AAAAAGGGGAACTGGGGATA+AGG + chr1_3:72249488-72249507 Msa0139050:five_prime_UTR 45.0%
AAAAGGGGAACTGGGGATAA+GGG + chr1_3:72249489-72249508 Msa0139050:five_prime_UTR 45.0%
CTGCAAATGCAATGGCATGT+TGG + chr1_3:72249531-72249550 Msa0139050:CDS 45.0%
GGCATGTTGGTCATGTTTGA+TGG + chr1_3:72249544-72249563 Msa0139050:CDS 45.0%
CATTTGAATTTGAGGGTCGG+TGG - chr1_3:72249614-72249633 None:intergenic 45.0%
GTAGTACCTGTAAGAGAGCT+TGG - chr1_3:72249703-72249722 None:intergenic 45.0%
GACCTACCTCCAAAAGTTGA+GGG - chr1_3:72249833-72249852 None:intergenic 45.0%
CTAGGTAACAGTGAGAGAGT+TGG + chr1_3:72250361-72250380 Msa0139050:intron 45.0%
GAATATGCTGAAGGAGCAGT+TGG + chr1_3:72250383-72250402 Msa0139050:CDS 45.0%
! GAAGGAGCAGTTGGAGATTT+TGG + chr1_3:72250392-72250411 Msa0139050:CDS 45.0%
!! AGCAGTTGGAGATTTTGGGA+AGG + chr1_3:72250397-72250416 Msa0139050:CDS 45.0%
GCAATAAGGAGTAGGAATGG+TGG + chr1_3:72250461-72250480 Msa0139050:CDS 45.0%
AGTAGGAATGGTGGCATTGT+TGG + chr1_3:72250470-72250489 Msa0139050:CDS 45.0%
!! GCATTGTTGGTTTGACGTGT+CGG + chr1_3:72250483-72250502 Msa0139050:CDS 45.0%
! TTGGTTTGACGTGTCGGATT+GGG + chr1_3:72250489-72250508 Msa0139050:CDS 45.0%
TGTCACTGGCCATATTGACA+TGG + chr1_3:72250517-72250536 Msa0139050:CDS 45.0%
AATTTGGATTCTTCCAGGCC+TGG + chr1_3:72251242-72251261 Msa0139050:intron 45.0%
ATTTGGATTCTTCCAGGCCT+GGG + chr1_3:72251243-72251262 Msa0139050:intron 45.0%
ATTCCTCATGCAGCAATAGG+TGG + chr1_3:72251470-72251489 Msa0139050:CDS 45.0%
! GCTATGTTGCATTGATGGCT+CGG - chr1_3:72251516-72251535 None:intergenic 45.0%
GCAACATAGCGTGATGATTG+AGG + chr1_3:72251526-72251545 Msa0139050:CDS 45.0%
! AGCGAGGCATCATGCTTATA+GGG + chr1_3:72251633-72251652 Msa0139050:CDS 45.0%
ATGCTTATAGGGACTGCTCA+TGG + chr1_3:72251644-72251663 Msa0139050:CDS 45.0%
TCTAAAGGCCTGCTTATACC+AGG + chr1_3:72251920-72251939 Msa0139050:intron 45.0%
CTAAAGGCCTGCTTATACCA+GGG + chr1_3:72251921-72251940 Msa0139050:intron 45.0%
CTTTAGACCCTGGTATAAGC+AGG - chr1_3:72251931-72251950 None:intergenic 45.0%
CTGCTTATACCAGGGTCTAA+AGG + chr1_3:72251929-72251948 Msa0139050:intron 45.0%
TCATAAAGGCCTTTAGACCC+TGG - chr1_3:72251941-72251960 None:intergenic 45.0%
TAACTCTAGTCAGAGGATGC+TGG + chr1_3:72252003-72252022 Msa0139050:intron 45.0%
ACACTACTGGGTTACACATC+AGG + chr1_3:72252352-72252371 Msa0139050:CDS 45.0%
! TACATTTGGTGAAGGGCTTC+TGG + chr1_3:72252535-72252554 Msa0139050:intron 45.0%
CAGAAAACGGTGGGATGATA+TGG - chr1_3:72252712-72252731 None:intergenic 45.0%
!! CATTGGCTCAAAGCTCAATG+TGG + chr1_3:72252837-72252856 Msa0139050:intron 45.0%
AGGAAAAGACCAACCATGCT+AGG - chr1_3:72253393-72253412 None:intergenic 45.0%
!!! CATGGTTGGTCTTTTCCTCA+TGG + chr1_3:72253395-72253414 Msa0139050:intron 45.0%
GACGGGAAGAATGAGAATTC+GGG - chr1_3:72253427-72253446 None:intergenic 45.0%
GGACGGGAAGAATGAGAATT+CGG - chr1_3:72253428-72253447 None:intergenic 45.0%
TCATTCTTCCCGTCCAAACT+AGG + chr1_3:72253433-72253452 Msa0139050:intron 45.0%
CACACACCAACTCTAAACCT+TGG - chr1_3:72253701-72253720 None:intergenic 45.0%
!!! CTTTCTAGGGCCACTTTTCT+GGG - chr1_3:72253820-72253839 None:intergenic 45.0%
!!! ACTTTCTAGGGCCACTTTTC+TGG - chr1_3:72253821-72253840 None:intergenic 45.0%
! CATTTTGTCCCGACAAACCT+AGG - chr1_3:72254192-72254211 None:intergenic 45.0%
GAGAGATAATGCACACACAG+AGG - chr1_3:72254232-72254251 None:intergenic 45.0%
ACCCGTGAAAAAAGGGGAAC+TGG + chr1_3:72249480-72249499 Msa0139050:five_prime_UTR 50.0%
!!! CCCAGTTCCCCTTTTTTCAC+GGG - chr1_3:72249484-72249503 None:intergenic 50.0%
CCCGTGAAAAAAGGGGAACT+GGG + chr1_3:72249481-72249500 Msa0139050:five_prime_UTR 50.0%
!!! CCCCAGTTCCCCTTTTTTCA+CGG - chr1_3:72249485-72249504 None:intergenic 50.0%
CCGTGAAAAAAGGGGAACTG+GGG + chr1_3:72249482-72249501 Msa0139050:five_prime_UTR 50.0%
CAACAGCAACAACAGCAGCA+TGG + chr1_3:72249576-72249595 Msa0139050:CDS 50.0%
GAACACTGTGACTGTGACTC+TGG - chr1_3:72249659-72249678 None:intergenic 50.0%
GTACCTGTAAGAGAGCTTGG+AGG - chr1_3:72249700-72249719 None:intergenic 50.0%
AAAGTTGAGGGCGGTTAGGT+TGG - chr1_3:72249821-72249840 None:intergenic 50.0%
! ACCTAACCGCCCTCAACTTT+TGG + chr1_3:72249821-72249840 Msa0139050:CDS 50.0%
TCCAAAAGTTGAGGGCGGTT+AGG - chr1_3:72249825-72249844 None:intergenic 50.0%
! TAACCGCCCTCAACTTTTGG+AGG + chr1_3:72249824-72249843 Msa0139050:CDS 50.0%
CTACCTCCAAAAGTTGAGGG+CGG - chr1_3:72249830-72249849 None:intergenic 50.0%
GGACCTACCTCCAAAAGTTG+AGG - chr1_3:72249834-72249853 None:intergenic 50.0%
GATACCGCGCTTCAGGAAAA+CGG - chr1_3:72250053-72250072 None:intergenic 50.0%
TTTCCTGAAGCGCGGTATCT+AGG + chr1_3:72250054-72250073 Msa0139050:CDS 50.0%
GTGTGGAGGAATGTGTAGCT+AGG + chr1_3:72250343-72250362 Msa0139050:intron 50.0%
!! GTTGGTTTGACGTGTCGGAT+TGG + chr1_3:72250488-72250507 Msa0139050:CDS 50.0%
! TTTGACGTGTCGGATTGGGA+GGG + chr1_3:72250493-72250512 Msa0139050:CDS 50.0%
! GACTTGGTCGGTTCCATGTT+TGG + chr1_3:72250772-72250791 Msa0139050:intron 50.0%
TTTGGATTCTTCCAGGCCTG+GGG + chr1_3:72251244-72251263 Msa0139050:intron 50.0%
AAGCTGAAGCTCATGCATGC+CGG + chr1_3:72251600-72251619 Msa0139050:CDS 50.0%
! GAGCGAGGCATCATGCTTAT+AGG + chr1_3:72251632-72251651 Msa0139050:CDS 50.0%
GAATTCGGGCAAAAGCCATG+AGG - chr1_3:72253413-72253432 None:intergenic 50.0%
TGTGACTGTGACTCTGGCTG+TGG - chr1_3:72249653-72249672 None:intergenic 55.0%
CGACCTCCAAGCTCTCTTAC+AGG + chr1_3:72249694-72249713 Msa0139050:CDS 55.0%
!! CGCCCTCAACTTTTGGAGGT+AGG + chr1_3:72249828-72249847 Msa0139050:intron 55.0%
TTGCCTAGATACCGCGCTTC+AGG - chr1_3:72250060-72250079 None:intergenic 55.0%
GCGCGGTATCTAGGCAAACA+CGG + chr1_3:72250063-72250082 Msa0139050:CDS 55.0%
! GTTTGACGTGTCGGATTGGG+AGG + chr1_3:72250492-72250511 Msa0139050:CDS 55.0%
! ACAGTAGTCTTGCCAACCCC+AGG - chr1_3:72251263-72251282 None:intergenic 55.0%
GCACCACCTATTGCTGCATG+AGG - chr1_3:72251476-72251495 None:intergenic 55.0%
AGGTGGTGCACGTAGAATGC+AGG + chr1_3:72251487-72251506 Msa0139050:CDS 55.0%
GAATCCTACGCTCTCTGACC+TGG + chr1_3:72251691-72251710 Msa0139050:CDS 55.0%
AGGGGAACTGGGGATAAGGG+TGG + chr1_3:72249492-72249511 Msa0139050:five_prime_UTR 60.0%
GGGGAACTGGGGATAAGGGT+GGG + chr1_3:72249493-72249512 Msa0139050:five_prime_UTR 60.0%
!! TGGGCCGTTTTCCTGAAGCG+CGG + chr1_3:72250046-72250065 Msa0139050:CDS 60.0%
GATTCTTCCAGGCCTGGGGT+TGG + chr1_3:72251248-72251267 Msa0139050:intron 60.0%
TGCCTCGCTCAGCAATCGAC+CGG - chr1_3:72251622-72251641 None:intergenic 60.0%
! CGAACCAGGTCAGAGAGCGT+AGG - chr1_3:72251698-72251717 None:intergenic 60.0%
AGGCAAGACCCCACAGGTTG+AGG + chr1_3:72253087-72253106 Msa0139050:CDS 60.0%
CTCTGGCTGTGGCTGAGTCG+CGG - chr1_3:72249642-72249661 None:intergenic 65.0%
! CGGATTGGGAGGGCTGTCAC+TGG + chr1_3:72250503-72250522 Msa0139050:CDS 65.0%
AGTCTTGCCAACCCCAGGCC+TGG - chr1_3:72251258-72251277 None:intergenic 65.0%
TGCCGGTCGATTGCTGAGCG+AGG + chr1_3:72251617-72251636 Msa0139050:CDS 65.0%
GCTTCGAGGCAAGACCCCAC+AGG + chr1_3:72253081-72253100 Msa0139050:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 72249439 72254271 72249439 ID=Msa0139050;Name=Msa0139050
chr1_3 mRNA 72249439 72254271 72249439 ID=Msa0139050-mRNA-1;Parent=Msa0139050;Name=Msa0139050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=85|1|1|1|1|1|9|249|392
chr1_3 exon 72249439 72249715 72249439 ID=Msa0139050-mRNA-1:exon:25210;Parent=Msa0139050-mRNA-1
chr1_3 exon 72249783 72249845 72249783 ID=Msa0139050-mRNA-1:exon:25211;Parent=Msa0139050-mRNA-1
chr1_3 exon 72250033 72250110 72250033 ID=Msa0139050-mRNA-1:exon:25212;Parent=Msa0139050-mRNA-1
chr1_3 exon 72250365 72250585 72250365 ID=Msa0139050-mRNA-1:exon:25213;Parent=Msa0139050-mRNA-1
chr1_3 exon 72251259 72251331 72251259 ID=Msa0139050-mRNA-1:exon:25214;Parent=Msa0139050-mRNA-1
chr1_3 exon 72251428 72251712 72251428 ID=Msa0139050-mRNA-1:exon:25215;Parent=Msa0139050-mRNA-1
chr1_3 exon 72252230 72252373 72252230 ID=Msa0139050-mRNA-1:exon:25216;Parent=Msa0139050-mRNA-1
chr1_3 exon 72253058 72253108 72253058 ID=Msa0139050-mRNA-1:exon:25217;Parent=Msa0139050-mRNA-1
chr1_3 exon 72253951 72254271 72253951 ID=Msa0139050-mRNA-1:exon:25218;Parent=Msa0139050-mRNA-1
chr1_3 five_prime_UTR 72249439 72249523 72249439 ID=Msa0139050-mRNA-1:five_prime_utr;Parent=Msa0139050-mRNA-1
chr1_3 CDS 72249524 72249715 72249524 ID=Msa0139050-mRNA-1:cds;Parent=Msa0139050-mRNA-1
chr1_3 CDS 72249783 72249845 72249783 ID=Msa0139050-mRNA-1:cds;Parent=Msa0139050-mRNA-1
chr1_3 CDS 72250033 72250110 72250033 ID=Msa0139050-mRNA-1:cds;Parent=Msa0139050-mRNA-1
chr1_3 CDS 72250365 72250585 72250365 ID=Msa0139050-mRNA-1:cds;Parent=Msa0139050-mRNA-1
chr1_3 CDS 72251259 72251331 72251259 ID=Msa0139050-mRNA-1:cds;Parent=Msa0139050-mRNA-1
chr1_3 CDS 72251428 72251712 72251428 ID=Msa0139050-mRNA-1:cds;Parent=Msa0139050-mRNA-1
chr1_3 CDS 72252230 72252373 72252230 ID=Msa0139050-mRNA-1:cds;Parent=Msa0139050-mRNA-1
chr1_3 CDS 72253058 72253108 72253058 ID=Msa0139050-mRNA-1:cds;Parent=Msa0139050-mRNA-1
chr1_3 CDS 72253951 72254022 72253951 ID=Msa0139050-mRNA-1:cds;Parent=Msa0139050-mRNA-1
chr1_3 three_prime_UTR 72254023 72254271 72254023 ID=Msa0139050-mRNA-1:three_prime_utr;Parent=Msa0139050-mRNA-1
Gene Sequence

>Msa0139050

ATGATAGCTGCAAATGCAATGGCATGTTGGTCATGTTTGATGGCAGCAACAGCAACAGCAACAACAGCAGCATGGAAATTGAAGTCACCACCGACCCTCAAATTCAAATGCTATGCCGCGACTCAGCCACAGCCAGAGTCACAGTCACAGTGTTCTCTTGTGCACAACGACGACCTCCAAGCTCTCTTACAGATTCTTCCTTCAGATTTGCATCACAATCTAATCAACCAACCTAACCGCCCTCAACTTTTGGAGGTTATATTGGATTTGGGCCGTTTTCCTGAAGCGCGGTATCTAGGCAAACACGGAAACCATTATCTAAGAAATTCTGAGGTAACAGTGAGAGAGTTGGAATATGCTGAAGGAGCAGTTGGAGATTTTGGGAAGGATAATAGAGCTGGTATTGAAGGTACTTTGCACAGAATATCAGCAATAAGGAGTAGGAATGGTGGCATTGTTGGTTTGACGTGTCGGATTGGGAGGGCTGTCACTGGCCATATTGACATGGTTTATGATCTGCTTCAATATGGCAAGAGCATTTTATTTCTTGGAAGGCCTGGGGTTGGCAAGACTACTGTTATGAGAGAGATTGCTCGTGTTCTGTCAGATGAATTTCACAAAAGAGTGGTGATTGTTGATACCAGTAATGAAATTGGAGGTGATGGCAATATTCCTCATGCAGCAATAGGTGGTGCACGTAGAATGCAGGTATCCGAGCCATCAATGCAACATAGCGTGATGATTGAGGCAGTAGAAAATCATATGCCTGAGGTGATTATAGTAGATGAGATTGGCACAGAAGCTGAAGCTCATGCATGCCGGTCGATTGCTGAGCGAGGCATCATGCTTATAGGGACTGCTCATGGACAGCAAATTGAGAATGTCATGAAGAATCCTACGCTCTCTGACCTGATTGGTGGAATTGAAAGTGTTACTCTGGGAGACTACGAAGCCAGAGCAAGAAAATGTCAGAAGACTATTCTTGAGAGGAAAGCTCCTCCAACATTTGATTTCTTGATTGAGATGAGAGATAGACACTACTGGGTTACACATCAGACCGACAAAAGCGTAGATATATTGCTTCGAGGCAAGACCCCACAGGTTGAGGTAAGAAAAAGAGATGAGAAATACAAGGTTGTGATCGAAAAATCTAAAGCATATGATAAGTGTCAAATTTGA

Protein sequence

>Msa0139050

MIAANAMACWSCLMAATATATTAAWKLKSPPTLKFKCYAATQPQPESQSQCSLVHNDDLQALLQILPSDLHHNLINQPNRPQLLEVILDLGRFPEARYLGKHGNHYLRNSEVTVRELEYAEGAVGDFGKDNRAGIEGTLHRISAIRSRNGGIVGLTCRIGRAVTGHIDMVYDLLQYGKSILFLGRPGVGKTTVMREIARVLSDEFHKRVVIVDTSNEIGGDGNIPHAAIGGARRMQVSEPSMQHSVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGIMLIGTAHGQQIENVMKNPTLSDLIGGIESVTLGDYEARARKCQKTILERKAPPTFDFLIEMRDRHYWVTHQTDKSVDILLRGKTPQVEVRKRDEKYKVVIEKSKAYDKCQI*