AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078090 MtrunA17_Chr1g0188261 83.029 383 11 3 6 341 4 379 0.0 629
Msa0078090 MtrunA17_Chr1g0210231 63.602 261 94 1 66 325 141 401 4.32e-109 333
Msa0078090 MtrunA17_Chr8g0360481 59.160 262 106 1 62 322 119 380 1.83e-106 325
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078090 AT1G33290.3 80.576 278 54 0 61 338 24 301 1.19e-169 474
Msa0078090 AT1G33290.1 80.576 278 54 0 61 338 98 375 2.59e-168 474
Msa0078090 AT3G10420.1 53.125 320 124 3 28 322 91 409 3.24e-110 332
Msa0078090 AT3G10420.2 53.125 320 124 3 28 322 91 409 2.98e-109 333
Msa0078090 AT1G73170.1 55.124 283 125 2 62 342 132 414 4.28e-103 317
Msa0078090 AT1G73170.3 55.124 283 125 2 62 342 132 414 4.35e-103 317
Msa0078090 AT1G73170.2 56.716 268 114 2 74 339 16 283 1.16e-101 310
Msa0078090 AT1G33290.2 81.818 121 22 0 61 181 98 218 5.33e-65 208
Msa0078090 AT1G33290.2 77.381 84 19 0 255 338 216 299 1.20e-39 142
Msa0078090 AT1G73170.4 47.857 140 71 2 205 342 1 140 2.18e-33 127

Find 94 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGAGCAGTTGGAGATTT+TGG 0.126961 1_2:-55382528 Msa0078090:CDS
GAGCGAGGCATCATGCTTAT+AGG 0.265973 1_2:-55381287 Msa0078090:CDS
ATCACCTCCAATTTCATTAC+TGG 0.299857 1_2:+55381478 None:intergenic
GTTGATACCAGTAATGAAAT+TGG 0.304856 1_2:-55381485 Msa0078090:CDS
TGGGTTTATAAATTATATTA+TGG 0.317072 1_2:+55378881 None:intergenic
GTTTATGATCTGCTTCAATA+TGG 0.323340 1_2:-55382381 Msa0078090:CDS
CCTCAATCAAGAAAAGTTAA+TGG 0.335708 1_2:+55378620 None:intergenic
ATCACGCTATGTTGCATTGA+TGG 0.341246 1_2:+55381401 None:intergenic
CGACCTCCAAGCTCTCTTAC+AGG 0.348222 1_2:-55383227 Msa0078090:intron
AGTAGGAATGGTGGCATTGT+TGG 0.363900 1_2:-55382450 Msa0078090:CDS
AACACAATTTACAAAATGAA+TGG 0.363945 1_2:+55378861 None:intergenic
GATCATAAACCATGTCAATA+TGG 0.372234 1_2:+55382394 None:intergenic
AGCGAGGCATCATGCTTATA+GGG 0.403823 1_2:-55381286 Msa0078090:CDS
AGGGGAACTGGGGATAAGGG+TGG 0.406703 1_2:-55383420 Msa0078090:five_prime_UTR
TGCACAGAATATCAGCAATA+AGG 0.410002 1_2:-55382473 Msa0078090:CDS
AAAAGGGGAACTGGGGATAA+GGG 0.412843 1_2:-55383423 Msa0078090:five_prime_UTR
GACAAACCTAGGTGTTAGTA+TGG 0.422069 1_2:+55378739 None:intergenic
CGGCATAGCATTTGAATTTG+AGG 0.430174 1_2:+55383296 None:intergenic
GGCATGTTGGTCATGTTTGA+TGG 0.431863 1_2:-55383368 Msa0078090:CDS
ACACAATTTACAAAATGAAT+GGG 0.435255 1_2:+55378862 None:intergenic
TTGGTTTGACGTGTCGGATT+GGG 0.436479 1_2:-55382431 Msa0078090:CDS
CATTTGCTTTATTAGATTGG+TGG 0.439996 1_2:-55380704 Msa0078090:intron
AATATTCCTCATGCAGCAAT+AGG 0.447097 1_2:-55381452 Msa0078090:CDS
ATACTAACACCTAGGTTTGT+CGG 0.449041 1_2:-55378737 Msa0078090:three_prime_UTR
GTAGTACCTGTAAGAGAGCT+TGG 0.449576 1_2:+55383221 None:intergenic
TATAAATTATATTATGGAAA+GGG 0.452150 1_2:+55378887 None:intergenic
GATAATAGAGCTGGTATTGA+AGG 0.452494 1_2:-55382501 Msa0078090:CDS
GGCATAGCATTTGAATTTGA+GGG 0.454237 1_2:+55383297 None:intergenic
AGGCAAGACCCCACAGGTTG+AGG 0.471366 1_2:-55379830 Msa0078090:intron
CGGATTGGGAGGGCTGTCAC+TGG 0.472439 1_2:-55382417 Msa0078090:CDS
ACACTACTGGGTTACACATC+AGG 0.473781 1_2:-55380567 Msa0078090:intron
GATTCTTCCAGGCCTGGGGT+TGG 0.476303 1_2:-55381671 Msa0078090:intron
TACTAACACCTAGGTTTGTC+GGG 0.487669 1_2:-55378736 Msa0078090:three_prime_UTR
GTTGGTTTGACGTGTCGGAT+TGG 0.489931 1_2:-55382432 Msa0078090:CDS
AGATGAGAGATAGACACTAC+TGG 0.502286 1_2:-55380580 Msa0078090:CDS
AGTAATGAAATTGGAGGTGA+TGG 0.508241 1_2:-55381476 Msa0078090:CDS
GCATTGTTGGTTTGACGTGT+CGG 0.509058 1_2:-55382437 Msa0078090:CDS
GTTTGACGTGTCGGATTGGG+AGG 0.510749 1_2:-55382428 Msa0078090:CDS
CCTAGGTGTTAGTATGGTAA+TGG 0.511636 1_2:+55378745 None:intergenic
TGGAATTGAAAGTGTTACTC+TGG 0.516865 1_2:-55380684 Msa0078090:CDS
GTGATTATAGTAGATGAGAT+TGG 0.517092 1_2:-55381347 Msa0078090:CDS
TCATCTACTATAATCACCTC+AGG 0.528346 1_2:+55381353 None:intergenic
CAGCAACAACAGCAGCATCA+TGG 0.530280 1_2:-55383339 Msa0078090:CDS
GAATATGCTGAAGGAGCAGT+TGG 0.530400 1_2:-55382537 Msa0078090:CDS
TTATAAATTATATTATGGAA+AGG 0.537273 1_2:+55378886 None:intergenic
ACAGTAGTCTTGCCAACCCC+AGG 0.537874 1_2:+55381659 None:intergenic
ACAAGAGAACACTGTGACTG+TGG 0.540268 1_2:+55383259 None:intergenic
GCTATGTTGCATTGATGGCT+CGG 0.540454 1_2:+55381406 None:intergenic
TCAATCAAGAAATCAAATGT+TGG 0.540516 1_2:+55380602 None:intergenic
TTTGGGAAGGATAATAGAGC+TGG 0.546805 1_2:-55382510 Msa0078090:CDS
AAATTATATTATGGAAAGGG+AGG 0.547372 1_2:+55378890 None:intergenic
ATGCTTATAGGGACTGCTCA+TGG 0.547544 1_2:-55381275 Msa0078090:CDS
CTAGGTAACAATGAGAGAGT+TGG 0.547690 1_2:-55382559 Msa0078090:intron
TTGTTTGTCCCGACAAACCT+AGG 0.552415 1_2:+55378728 None:intergenic
GAACACTGTGACTGTGGCTG+TGG 0.554157 1_2:+55383265 None:intergenic
AGGTGGTGCACGTAGAATGC+AGG 0.554707 1_2:-55381432 Msa0078090:CDS
TTTGGATTCTTCCAGGCCTG+GGG 0.555222 1_2:-55381675 Msa0078090:intron
GCAACATAGCGTGATGATTG+AGG 0.555819 1_2:-55381393 Msa0078090:CDS
GAATCCTACGCTCTCTGACC+TGG 0.561221 1_2:-55381228 Msa0078090:intron
TGCCTCGCTCAGCAATCGAC+CGG 0.568637 1_2:+55381300 None:intergenic
AGCGTAGATATATTGCTTCG+AGG 0.569413 1_2:-55379850 Msa0078090:CDS
GAATATCAGCAATAAGGAGT+AGG 0.577619 1_2:-55382467 Msa0078090:CDS
TGCCGGTCGATTGCTGAGCG+AGG 0.579543 1_2:-55381302 Msa0078090:CDS
GCTTCGAGGCAAGACCCCAC+AGG 0.579998 1_2:-55379836 Msa0078090:CDS
CATTTGAATTTGAGGGTCGG+TGG 0.585953 1_2:+55383304 None:intergenic
GGGGAACTGGGGATAAGGGT+GGG 0.586739 1_2:-55383419 Msa0078090:five_prime_UTR
AAGCTGAAGCTCATGCATGC+CGG 0.588992 1_2:-55381319 Msa0078090:CDS
TGTCACTGGCCATATTGACA+TGG 0.589779 1_2:-55382403 Msa0078090:CDS
TTTGACGTGTCGGATTGGGA+GGG 0.591021 1_2:-55382427 Msa0078090:CDS
ATCAAGAAATCAAATGTTGG+AGG 0.591943 1_2:+55380605 None:intergenic
TCAGCAATAAGGAGTAGGAA+TGG 0.597931 1_2:-55382462 Msa0078090:CDS
GAAGAATTACCTCAACCTGT+GGG 0.599084 1_2:+55379821 None:intergenic
TAGCATTTGAATTTGAGGGT+CGG 0.608467 1_2:+55383301 None:intergenic
GTACCTGTAAGAGAGCTTGG+AGG 0.612753 1_2:+55383224 None:intergenic
AATGATAGTTGCAAATGCAA+TGG 0.613364 1_2:-55383389 Msa0078090:CDS
CCATTACCATACTAACACCT+AGG 0.616662 1_2:-55378745 Msa0078090:three_prime_UTR
GTCAGAAGACTATTCTTGAG+AGG 0.618967 1_2:-55380634 Msa0078090:CDS
GATGAGAGATAGACACTACT+GGG 0.625526 1_2:-55380579 Msa0078090:CDS
ATTCCTCATGCAGCAATAGG+TGG 0.626244 1_2:-55381449 Msa0078090:CDS
CTGTGGCTGTGGCTGAGTCG+CGG 0.631504 1_2:+55383276 None:intergenic
AGAGAGTTGGAATATGCTGA+AGG 0.635157 1_2:-55382546 Msa0078090:CDS
AGATGAATTTCACAAAAGAG+TGG 0.647161 1_2:-55381609 Msa0078090:intron
TGAAGAATTACCTCAACCTG+TGG 0.649387 1_2:+55379820 None:intergenic
TTGCAAATGCAATGGCATGT+TGG 0.650133 1_2:-55383381 Msa0078090:CDS
GCACCACCTATTGCTGCATG+AGG 0.660141 1_2:+55381446 None:intergenic
GGAATTGAAAGTGTTACTCT+GGG 0.661020 1_2:-55380683 Msa0078090:CDS
GCAATAAGGAGTAGGAATGG+TGG 0.666850 1_2:-55382459 Msa0078090:CDS
GATACCAGTAATGAAATTGG+AGG 0.667560 1_2:-55381482 Msa0078090:CDS
GAAGAGAGATAATGCACACA+CGG 0.667574 1_2:+55378658 None:intergenic
CGAACCAGGTCAGAGAGCGT+AGG 0.667831 1_2:+55381224 None:intergenic
AAGAATTACCTCAACCTGTG+GGG 0.683693 1_2:+55379822 None:intergenic
TTAATGGTCTCAGAATCAGA+AGG 0.692795 1_2:+55378636 None:intergenic
AGTAGAAAATCATATGCCTG+AGG 0.712015 1_2:-55381369 Msa0078090:CDS
GAGAGATAATGCACACACGG+AGG 0.753163 1_2:+55378661 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAATCATAAATTATTAAA+AGG - chr1_2:55380316-55380335 Msa0078090:intron 10.0%
!! TATAAATTATATTATGGAAA+GGG + chr1_2:55383191-55383210 None:intergenic 10.0%
!! TTATAAATTATATTATGGAA+AGG + chr1_2:55383192-55383211 None:intergenic 10.0%
!!! TGTTTTAAATTGTTTATATA+TGG + chr1_2:55383287-55383306 None:intergenic 10.0%
!! TAAAACTAAATAAGAAAAGT+GGG + chr1_2:55379407-55379426 None:intergenic 15.0%
!!! CAATTTTATCATCTTATATT+TGG - chr1_2:55379870-55379889 Msa0078090:intron 15.0%
!!! TTATGATTCTATTTTGTTAT+TGG + chr1_2:55380307-55380326 None:intergenic 15.0%
!!! TTGAATTTTATTATTGTAAC+AGG - chr1_2:55381749-55381768 Msa0078090:intron 15.0%
!! AAAAATTAGTACAATTATCA+GGG + chr1_2:55381911-55381930 None:intergenic 15.0%
!! TAAAAATTAGTACAATTATC+AGG + chr1_2:55381912-55381931 None:intergenic 15.0%
!!! GTAATACTTTTCATTTATTT+TGG - chr1_2:55382372-55382391 Msa0078090:CDS 15.0%
!! AACATAAATCTTCATATAAT+AGG + chr1_2:55382836-55382855 None:intergenic 15.0%
!!! GTTATAATTTTAACTTTCTA+GGG + chr1_2:55382991-55383010 None:intergenic 15.0%
!!! TGTTATAATTTTAACTTTCT+AGG + chr1_2:55382992-55383011 None:intergenic 15.0%
!! TGGGTTTATAAATTATATTA+TGG + chr1_2:55383197-55383216 None:intergenic 15.0%
!!! TGTTTTTTTAAGACATTAAG+AGG - chr1_2:55378602-55378621 Msa0078090:three_prime_UTR 20.0%
!! AAAAAAGAAAGTTGTAAGAA+AGG + chr1_2:55378904-55378923 None:intergenic 20.0%
!! ACAAAGAGAGATAAATAATA+GGG + chr1_2:55379009-55379028 None:intergenic 20.0%
!! AACAAAGAGAGATAAATAAT+AGG + chr1_2:55379010-55379029 None:intergenic 20.0%
!! TATAGTATAGTATACTATGT+CGG + chr1_2:55379127-55379146 None:intergenic 20.0%
!! TCTAACTCATTATTACAAAA+CGG + chr1_2:55379320-55379339 None:intergenic 20.0%
!! CTAAAACTAAATAAGAAAAG+TGG + chr1_2:55379408-55379427 None:intergenic 20.0%
!!! TAAACTAAGCTTTAGAAATT+AGG + chr1_2:55379771-55379790 None:intergenic 20.0%
!! GCTGTTAATTGTAATATATT+TGG - chr1_2:55379951-55379970 Msa0078090:intron 20.0%
!!! ATTAAATCTGTTTTATCTTG+TGG + chr1_2:55380059-55380078 None:intergenic 20.0%
!! TACCATTTATAATAGATCAT+GGG + chr1_2:55380251-55380270 None:intergenic 20.0%
!! TTACCATTTATAATAGATCA+TGG + chr1_2:55380252-55380271 None:intergenic 20.0%
!! TAGAATGAATTCTTTCAAAT+TGG - chr1_2:55380557-55380576 Msa0078090:intron 20.0%
!! AGAATGAATTCTTTCAAATT+GGG - chr1_2:55380558-55380577 Msa0078090:intron 20.0%
!! GGAAAAATCTTATAGATTAT+TGG + chr1_2:55380899-55380918 None:intergenic 20.0%
!! AAACCATAATAAATTCGTAA+AGG + chr1_2:55381111-55381130 None:intergenic 20.0%
!!! GGTAACTATATCTTATTTTA+TGG - chr1_2:55381180-55381199 Msa0078090:intron 20.0%
!! ATGTATGTCAAATATGAAAA+TGG + chr1_2:55381678-55381697 None:intergenic 20.0%
!! TTTCATATTTGACATACATT+TGG - chr1_2:55381679-55381698 Msa0078090:intron 20.0%
!! ACAATGTTATTAACAGAAAA+CGG + chr1_2:55381883-55381902 None:intergenic 20.0%
!! AATCAAATAGTCATTTCATT+TGG + chr1_2:55382438-55382457 None:intergenic 20.0%
!!! TGAAATGACTATTTGATTTT+TGG - chr1_2:55382440-55382459 Msa0078090:CDS 20.0%
!!! TATTATTTCTCTTTTACGTT+TGG - chr1_2:55382896-55382915 Msa0078090:intron 20.0%
!! GAATTGATCATTAATACATT+GGG + chr1_2:55383021-55383040 None:intergenic 20.0%
!! TGAATTGATCATTAATACAT+TGG + chr1_2:55383022-55383041 None:intergenic 20.0%
!! ATGTATTAATGATCAATTCA+AGG - chr1_2:55383022-55383041 Msa0078090:intron 20.0%
!! ACACAATTTACAAAATGAAT+GGG + chr1_2:55383216-55383235 None:intergenic 20.0%
!! AACACAATTTACAAAATGAA+TGG + chr1_2:55383217-55383236 None:intergenic 20.0%
! ATAATAAAGAAGTGATGCAT+TGG + chr1_2:55379363-55379382 None:intergenic 25.0%
! AAAAAGAATGTTCTGTTCAA+AGG - chr1_2:55379454-55379473 Msa0078090:intron 25.0%
!! ATAATACTTCAAGTTCTAAC+CGG - chr1_2:55379790-55379809 Msa0078090:intron 25.0%
! TTATATTTGGTCTAAACATC+AGG - chr1_2:55379883-55379902 Msa0078090:intron 25.0%
! TGTAATATATTTGGTCTGTT+TGG - chr1_2:55379960-55379979 Msa0078090:intron 25.0%
!!! AAGCTGTTTTAACAAATTCT+CGG - chr1_2:55380168-55380187 Msa0078090:intron 25.0%
! TTCTTGCATCTCTTATAATT+TGG - chr1_2:55380382-55380401 Msa0078090:intron 25.0%
!!! TGATCTATAACACTACTTTT+AGG + chr1_2:55380529-55380548 None:intergenic 25.0%
!!! ATCTCAACTTTTTAAAAAGG+GGG + chr1_2:55380921-55380940 None:intergenic 25.0%
!!! GATCTCAACTTTTTAAAAAG+GGG + chr1_2:55380922-55380941 None:intergenic 25.0%
!!! GGATCTCAACTTTTTAAAAA+GGG + chr1_2:55380923-55380942 None:intergenic 25.0%
! TCAACTGTGTTTAAAAGAAA+AGG - chr1_2:55381002-55381021 Msa0078090:intron 25.0%
!!! GTAGTTATATCGATTTTATG+TGG - chr1_2:55381024-55381043 Msa0078090:intron 25.0%
!!! AATAAGCAACATATTGACTT+TGG + chr1_2:55381050-55381069 None:intergenic 25.0%
!! TCAATATGTTGCTTATTTCA+GGG - chr1_2:55381053-55381072 Msa0078090:intron 25.0%
! AATTTAATAACTCTAGTCAG+AGG - chr1_2:55381152-55381171 Msa0078090:intron 25.0%
!! AATGAGTGAAACAAATTTTC+AGG + chr1_2:55381240-55381259 None:intergenic 25.0%
! AATCTAATAAAGCAAATGGA+GGG + chr1_2:55381369-55381388 None:intergenic 25.0%
! TCAATCAAGAAATCAAATGT+TGG + chr1_2:55381476-55381495 None:intergenic 25.0%
!! ACATATTTACATCCTTTTAC+TGG + chr1_2:55381975-55381994 None:intergenic 25.0%
! AAAGGATGTAAATATGTCAT+TGG - chr1_2:55381978-55381997 Msa0078090:intron 25.0%
!!! GATTAGTTTTGTTGATTGTT+TGG - chr1_2:55382047-55382066 Msa0078090:intron 25.0%
! CACTTAAAAATTTAGTCTAG+TGG - chr1_2:55382076-55382095 Msa0078090:intron 25.0%
! TTATAAGCCAAAATATGAGT+TGG - chr1_2:55382152-55382171 Msa0078090:intron 25.0%
!! CATAAAACCAACTCATATTT+TGG + chr1_2:55382162-55382181 None:intergenic 25.0%
! GCATATCATTCTTGAAAATA+AGG + chr1_2:55382317-55382336 None:intergenic 25.0%
!!! CTTTTCATTTATTTTGGTTG+TGG - chr1_2:55382378-55382397 Msa0078090:CDS 25.0%
!! GGTATAAACTTATACTTTTG+TGG + chr1_2:55382530-55382549 None:intergenic 25.0%
! TTTACAGTCATTGCAAATTA+GGG + chr1_2:55382666-55382685 None:intergenic 25.0%
!! TTTTACAGTCATTGCAAATT+AGG + chr1_2:55382667-55382686 None:intergenic 25.0%
!! AAACTTATTCCCTGATTTTA+TGG - chr1_2:55382715-55382734 Msa0078090:intron 25.0%
! ATGTAACTTCCATAAAATCA+GGG + chr1_2:55382727-55382746 None:intergenic 25.0%
! TATGTAACTTCCATAAAATC+AGG + chr1_2:55382728-55382747 None:intergenic 25.0%
! ATATGAAGATTTATGTTCCA+AGG - chr1_2:55382839-55382858 Msa0078090:intron 25.0%
!! TTTTCTGGGTATATTATGAT+AGG + chr1_2:55382964-55382983 None:intergenic 25.0%
! AAAAAGAGATGAGAAATACA+AGG - chr1_2:55383114-55383133 Msa0078090:intron 25.0%
! AAATTATATTATGGAAAGGG+AGG + chr1_2:55383188-55383207 None:intergenic 25.0%
AATGATAGTTGCAAATGCAA+TGG - chr1_2:55378686-55378705 Msa0078090:intron 30.0%
GAAAGTTGTAAGAAAGGAAA+TGG + chr1_2:55378898-55378917 None:intergenic 30.0%
TATAACCTGATGAAGAATGA+AGG + chr1_2:55379168-55379187 None:intergenic 30.0%
CATTCTTCATCAGGTTATAT+TGG - chr1_2:55379169-55379188 Msa0078090:intron 30.0%
TCATCAGGTTATATTGGATT+TGG - chr1_2:55379175-55379194 Msa0078090:intron 30.0%
CATCAGGTTATATTGGATTT+GGG - chr1_2:55379176-55379195 Msa0078090:intron 30.0%
CCTCAGAATTTCTTAGATAA+TGG + chr1_2:55379241-55379260 None:intergenic 30.0%
CCATTATCTAAGAAATTCTG+AGG - chr1_2:55379238-55379257 Msa0078090:intron 30.0%
!! AGAAATTCTGAGGTAAAAGT+AGG - chr1_2:55379248-55379267 Msa0078090:intron 30.0%
!!! AAACGGACTTTTTTAAGATG+TGG + chr1_2:55379303-55379322 None:intergenic 30.0%
GATCATAAACCATGTCAATA+TGG + chr1_2:55379684-55379703 None:intergenic 30.0%
GTTTATGATCTGCTTCAATA+TGG - chr1_2:55379694-55379713 Msa0078090:intron 30.0%
!! AGAGCATTTTATTTCTTGGA+AGG - chr1_2:55379719-55379738 Msa0078090:intron 30.0%
ATATAGATGTGCATCATTCA+TGG - chr1_2:55379745-55379764 Msa0078090:intron 30.0%
! TTTTGTGTGTGTTAAAGACT+TGG - chr1_2:55379911-55379930 Msa0078090:intron 30.0%
AGCCCATGATCTATTATAAA+TGG - chr1_2:55380246-55380265 Msa0078090:intron 30.0%
CTTATAATTTGGATTCTTCC+AGG - chr1_2:55380393-55380412 Msa0078090:intron 30.0%
AGATGAATTTCACAAAAGAG+TGG - chr1_2:55380466-55380485 Msa0078090:intron 30.0%
TGAATTCTTTCAAATTGGGT+AGG - chr1_2:55380562-55380581 Msa0078090:intron 30.0%
GTTGATACCAGTAATGAAAT+TGG - chr1_2:55380590-55380609 Msa0078090:CDS 30.0%
GTGATTATAGTAGATGAGAT+TGG - chr1_2:55380728-55380747 Msa0078090:intron 30.0%
TATGATAATCAAAACGAACC+AGG + chr1_2:55380868-55380887 None:intergenic 30.0%
!! TCTCAACTTTTTAAAAAGGG+GGG + chr1_2:55380920-55380939 None:intergenic 30.0%
!! GGGATCTCAACTTTTTAAAA+AGG + chr1_2:55380924-55380943 None:intergenic 30.0%
TAAATGACTCAATGAAGCTA+GGG + chr1_2:55380944-55380963 None:intergenic 30.0%
ATAAATGACTCAATGAAGCT+AGG + chr1_2:55380945-55380964 None:intergenic 30.0%
! GTCAATATGTTGCTTATTTC+AGG - chr1_2:55381052-55381071 Msa0078090:intron 30.0%
AGGCCTTTACGAATTTATTA+TGG - chr1_2:55381105-55381124 Msa0078090:intron 30.0%
CAATCTAATAAAGCAAATGG+AGG + chr1_2:55381370-55381389 None:intergenic 30.0%
! CTCCATTTGCTTTATTAGAT+TGG - chr1_2:55381368-55381387 Msa0078090:CDS 30.0%
CACCAATCTAATAAAGCAAA+TGG + chr1_2:55381373-55381392 None:intergenic 30.0%
! CATTTGCTTTATTAGATTGG+TGG - chr1_2:55381371-55381390 Msa0078090:CDS 30.0%
ATCAAGAAATCAAATGTTGG+AGG + chr1_2:55381473-55381492 None:intergenic 30.0%
! ATTTGACATACATTTGGTGA+AGG - chr1_2:55381685-55381704 Msa0078090:intron 30.0%
! TTTGACATACATTTGGTGAA+GGG - chr1_2:55381686-55381705 Msa0078090:intron 30.0%
! CCATATAACAATATGATGGA+TGG + chr1_2:55381836-55381855 None:intergenic 30.0%
CCATCCATCATATTGTTATA+TGG - chr1_2:55381833-55381852 Msa0078090:intron 30.0%
TCAGCCATATAACAATATGA+TGG + chr1_2:55381840-55381859 None:intergenic 30.0%
TGTTATTAACAGAAAACGGT+GGG + chr1_2:55381879-55381898 None:intergenic 30.0%
ATGTTATTAACAGAAAACGG+TGG + chr1_2:55381880-55381899 None:intergenic 30.0%
ATATAGATGACAAACCATTG+TGG + chr1_2:55381948-55381967 None:intergenic 30.0%
! CAATGGTTTGTCATCTATAT+CGG - chr1_2:55381948-55381967 Msa0078090:intron 30.0%
! AATGGTTTGTCATCTATATC+GGG - chr1_2:55381949-55381968 Msa0078090:intron 30.0%
! AATCGTCTAAAATATGATGC+AGG + chr1_2:55382031-55382050 None:intergenic 30.0%
! TTAGTCTAGTGGAATTGTTT+TGG - chr1_2:55382087-55382106 Msa0078090:intron 30.0%
! CAATATATCTACGCTTTTGT+CGG + chr1_2:55382220-55382239 None:intergenic 30.0%
!!! GACTATTTGATTTTTGGTTG+AGG - chr1_2:55382446-55382465 Msa0078090:CDS 30.0%
GTATAAGTTTATACCTAGCA+TGG - chr1_2:55382535-55382554 Msa0078090:CDS 30.0%
TAATGTAATCCTAGTTTGGA+CGG + chr1_2:55382603-55382622 None:intergenic 30.0%
ACACTAATGTAATCCTAGTT+TGG + chr1_2:55382607-55382626 None:intergenic 30.0%
TTACAGTCATTGCAAATTAG+GGG + chr1_2:55382665-55382684 None:intergenic 30.0%
! AAATCAGGGAATAAGTTTTG+TGG + chr1_2:55382713-55382732 None:intergenic 30.0%
TGCTTTCATTAACTTCACAT+TGG - chr1_2:55382787-55382806 Msa0078090:intron 30.0%
GCTTTCATTAACTTCACATT+GGG - chr1_2:55382788-55382807 Msa0078090:intron 30.0%
! TTTGGTTCATAAATATGCTC+TGG - chr1_2:55382914-55382933 Msa0078090:intron 30.0%
ATAAATATGCTCTGGTCATA+TGG - chr1_2:55382922-55382941 Msa0078090:intron 30.0%
TCATAATATACCCAGAAAAG+TGG - chr1_2:55382965-55382984 Msa0078090:intron 30.0%
CCTCAATCAAGAAAAGTTAA+TGG + chr1_2:55383458-55383477 None:intergenic 30.0%
! CCATTAACTTTTCTTGATTG+AGG - chr1_2:55383455-55383474 Msa0078090:five_prime_UTR 30.0%
TGACTATTACCCGTGAAAAA+AGG - chr1_2:55378635-55378654 Msa0078090:three_prime_UTR 35.0%
GACTATTACCCGTGAAAAAA+GGG - chr1_2:55378636-55378655 Msa0078090:three_prime_UTR 35.0%
ACTATTACCCGTGAAAAAAG+GGG - chr1_2:55378637-55378656 Msa0078090:three_prime_UTR 35.0%
TAGCATTTGAATTTGAGGGT+CGG + chr1_2:55378777-55378796 None:intergenic 35.0%
GGCATAGCATTTGAATTTGA+GGG + chr1_2:55378781-55378800 None:intergenic 35.0%
AGAAAGGAAATGGTTGAGAA+TGG + chr1_2:55378888-55378907 None:intergenic 35.0%
AGATTGTGATGCAAATCTGA+AGG + chr1_2:55378946-55378965 None:intergenic 35.0%
! CATTCAATGATGTGTTGTTG+CGG + chr1_2:55379085-55379104 None:intergenic 35.0%
TTGAACCTTCATTCTTCATC+AGG - chr1_2:55379160-55379179 Msa0078090:intron 35.0%
GCTCTTCATAAACTCTAATC+CGG + chr1_2:55379274-55379293 None:intergenic 35.0%
TTGTGATATGATCTCATGTG+TGG - chr1_2:55379481-55379500 Msa0078090:intron 35.0%
! GATAATAGAGCTGGTATTGA+AGG - chr1_2:55379574-55379593 Msa0078090:intron 35.0%
TGCACAGAATATCAGCAATA+AGG - chr1_2:55379602-55379621 Msa0078090:intron 35.0%
GAATATCAGCAATAAGGAGT+AGG - chr1_2:55379608-55379627 Msa0078090:intron 35.0%
!!! GGCAAGAGCATTTTATTTCT+TGG - chr1_2:55379715-55379734 Msa0078090:intron 35.0%
! CCGATTTCATTTCAAGTATC+CGG + chr1_2:55379812-55379831 None:intergenic 35.0%
CCGGATACTTGAAATGAAAT+CGG - chr1_2:55379809-55379828 Msa0078090:intron 35.0%
GATACCAGTAATGAAATTGG+AGG - chr1_2:55380593-55380612 Msa0078090:CDS 35.0%
ATCACCTCCAATTTCATTAC+TGG + chr1_2:55380600-55380619 None:intergenic 35.0%
AGTAATGAAATTGGAGGTGA+TGG - chr1_2:55380599-55380618 Msa0078090:CDS 35.0%
AATATTCCTCATGCAGCAAT+AGG - chr1_2:55380623-55380642 Msa0078090:CDS 35.0%
AGTAGAAAATCATATGCCTG+AGG - chr1_2:55380706-55380725 Msa0078090:intron 35.0%
TCATCTACTATAATCACCTC+AGG + chr1_2:55380725-55380744 None:intergenic 35.0%
TTGCTTATTTCAGGGTCTAA+AGG - chr1_2:55381061-55381080 Msa0078090:intron 35.0%
TTGTTTCACTCATTCAGTTG+AGG - chr1_2:55381246-55381265 Msa0078090:CDS 35.0%
TTAAAGACATGCTTGATGTG+TGG - chr1_2:55381297-55381316 Msa0078090:CDS 35.0%
!! TGGAATTGAAAGTGTTACTC+TGG - chr1_2:55381391-55381410 Msa0078090:CDS 35.0%
!! GGAATTGAAAGTGTTACTCT+GGG - chr1_2:55381392-55381411 Msa0078090:CDS 35.0%
AATTAGTAACAAAGAGACCG+TGG - chr1_2:55381636-55381655 Msa0078090:CDS 35.0%
GACTATCCAATTATTCACCA+CGG + chr1_2:55381656-55381675 None:intergenic 35.0%
CTTCTGGTAATAGCTAGTAA+AGG - chr1_2:55381709-55381728 Msa0078090:intron 35.0%
!! AAAAAAAAGTGCTGCCACAA+TGG - chr1_2:55381931-55381950 Msa0078090:intron 35.0%
TGGTTGAGGTTTAGATGAAA+AGG - chr1_2:55382460-55382479 Msa0078090:CDS 35.0%
AAGTTTATACCTAGCATGGT+TGG - chr1_2:55382539-55382558 Msa0078090:CDS 35.0%
AATGTAATCCTAGTTTGGAC+GGG + chr1_2:55382602-55382621 None:intergenic 35.0%
ACTAGGATTACATTAGTGTG+TGG - chr1_2:55382608-55382627 Msa0078090:intron 35.0%
GGGGTTATAGGAAATATAGA+TGG + chr1_2:55382646-55382665 None:intergenic 35.0%
CATTGCAAATTAGGGGTTAT+AGG + chr1_2:55382658-55382677 None:intergenic 35.0%
! AGCATACATGTTGCATGTTT+TGG + chr1_2:55382771-55382790 None:intergenic 35.0%
! TATGTTCCAAGGTTTAGAGT+TGG - chr1_2:55382850-55382869 Msa0078090:intron 35.0%
!! AGAGTTGGTGTGTGATAAAT+CGG - chr1_2:55382865-55382884 Msa0078090:intron 35.0%
!!! ATGTCTCGTAACTTTTTTGC+AGG - chr1_2:55383087-55383106 Msa0078090:intron 35.0%
ATACTAACACCTAGGTTTGT+CGG - chr1_2:55383338-55383357 Msa0078090:CDS 35.0%
TTAATGGTCTCAGAATCAGA+AGG + chr1_2:55383442-55383461 None:intergenic 35.0%
TTGCAAATGCAATGGCATGT+TGG - chr1_2:55378694-55378713 Msa0078090:intron 40.0%
CGGCATAGCATTTGAATTTG+AGG + chr1_2:55378782-55378801 None:intergenic 40.0%
!! ATTCTGAGGTAAAAGTAGGC+CGG - chr1_2:55379252-55379271 Msa0078090:intron 40.0%
TGATATGATCTCATGTGTGG+AGG - chr1_2:55379484-55379503 Msa0078090:intron 40.0%
CTAGGTAACAATGAGAGAGT+TGG - chr1_2:55379516-55379535 Msa0078090:intron 40.0%
AGAGAGTTGGAATATGCTGA+AGG - chr1_2:55379529-55379548 Msa0078090:intron 40.0%
! AAGGAGCAGTTGGAGATTTT+GGG - chr1_2:55379548-55379567 Msa0078090:intron 40.0%
TTTGGGAAGGATAATAGAGC+TGG - chr1_2:55379565-55379584 Msa0078090:intron 40.0%
TCAGCAATAAGGAGTAGGAA+TGG - chr1_2:55379613-55379632 Msa0078090:intron 40.0%
! GTGTGTGTTAAAGACTTGGT+CGG - chr1_2:55379915-55379934 Msa0078090:intron 40.0%
ACAATTAACAGCGCCAAACA+TGG + chr1_2:55379943-55379962 None:intergenic 40.0%
ATCACGCTATGTTGCATTGA+TGG + chr1_2:55380677-55380696 None:intergenic 40.0%
! CTTCTGACATTTTCTTGCTC+TGG + chr1_2:55381429-55381448 None:intergenic 40.0%
GTCAGAAGACTATTCTTGAG+AGG - chr1_2:55381441-55381460 Msa0078090:CDS 40.0%
AGATGAGAGATAGACACTAC+TGG - chr1_2:55381495-55381514 Msa0078090:intron 40.0%
GATGAGAGATAGACACTACT+GGG - chr1_2:55381496-55381515 Msa0078090:intron 40.0%
AAGAGACCGTGGTGAATAAT+TGG - chr1_2:55381647-55381666 Msa0078090:CDS 40.0%
ATCTATATCGGGCCAGTAAA+AGG - chr1_2:55381960-55381979 Msa0078090:intron 40.0%
TGGTCCTGAACTAAAAAGTG+AGG - chr1_2:55382107-55382126 Msa0078090:intron 40.0%
GGTCCTGAACTAAAAAGTGA+GGG - chr1_2:55382108-55382127 Msa0078090:intron 40.0%
!!! GTACCCTCACTTTTTAGTTC+AGG + chr1_2:55382114-55382133 None:intergenic 40.0%
AGCGTAGATATATTGCTTCG+AGG - chr1_2:55382225-55382244 Msa0078090:intron 40.0%
AAGAATTACCTCAACCTGTG+GGG + chr1_2:55382256-55382275 None:intergenic 40.0%
GAAGAATTACCTCAACCTGT+GGG + chr1_2:55382257-55382276 None:intergenic 40.0%
TGAAGAATTACCTCAACCTG+TGG + chr1_2:55382258-55382277 None:intergenic 40.0%
GTGTGTGATAAATCGGAGTA+TGG - chr1_2:55382872-55382891 Msa0078090:intron 40.0%
CCTAGGTGTTAGTATGGTAA+TGG + chr1_2:55383333-55383352 None:intergenic 40.0%
CCATTACCATACTAACACCT+AGG - chr1_2:55383330-55383349 Msa0078090:CDS 40.0%
GACAAACCTAGGTGTTAGTA+TGG + chr1_2:55383339-55383358 None:intergenic 40.0%
TACTAACACCTAGGTTTGTC+GGG - chr1_2:55383339-55383358 Msa0078090:CDS 40.0%
GAAGAGAGATAATGCACACA+CGG + chr1_2:55383420-55383439 None:intergenic 40.0%
AAAAAGGGGAACTGGGGATA+AGG - chr1_2:55378651-55378670 Msa0078090:three_prime_UTR 45.0%
AAAAGGGGAACTGGGGATAA+GGG - chr1_2:55378652-55378671 Msa0078090:three_prime_UTR 45.0%
GGCATGTTGGTCATGTTTGA+TGG - chr1_2:55378707-55378726 Msa0078090:intron 45.0%
CATTTGAATTTGAGGGTCGG+TGG + chr1_2:55378774-55378793 None:intergenic 45.0%
ACAAGAGAACACTGTGACTG+TGG + chr1_2:55378819-55378838 None:intergenic 45.0%
GTAGTACCTGTAAGAGAGCT+TGG + chr1_2:55378857-55378876 None:intergenic 45.0%
GACCTACCTCCAAAAGTTGA+GGG + chr1_2:55378987-55379006 None:intergenic 45.0%
GATACCACGCTTCAGGAAAA+CGG + chr1_2:55379202-55379221 None:intergenic 45.0%
TTTCCTGAAGCGTGGTATCT+AGG - chr1_2:55379203-55379222 Msa0078090:intron 45.0%
GAATATGCTGAAGGAGCAGT+TGG - chr1_2:55379538-55379557 Msa0078090:intron 45.0%
! GAAGGAGCAGTTGGAGATTT+TGG - chr1_2:55379547-55379566 Msa0078090:intron 45.0%
!! AGCAGTTGGAGATTTTGGGA+AGG - chr1_2:55379552-55379571 Msa0078090:intron 45.0%
GCAATAAGGAGTAGGAATGG+TGG - chr1_2:55379616-55379635 Msa0078090:intron 45.0%
AGTAGGAATGGTGGCATTGT+TGG - chr1_2:55379625-55379644 Msa0078090:intron 45.0%
!! GCATTGTTGGTTTGACGTGT+CGG - chr1_2:55379638-55379657 Msa0078090:intron 45.0%
! TTGGTTTGACGTGTCGGATT+GGG - chr1_2:55379644-55379663 Msa0078090:intron 45.0%
TGTCACTGGCCATATTGACA+TGG - chr1_2:55379672-55379691 Msa0078090:intron 45.0%
AATTTGGATTCTTCCAGGCC+TGG - chr1_2:55380398-55380417 Msa0078090:intron 45.0%
ATTTGGATTCTTCCAGGCCT+GGG - chr1_2:55380399-55380418 Msa0078090:intron 45.0%
ATTCCTCATGCAGCAATAGG+TGG - chr1_2:55380626-55380645 Msa0078090:CDS 45.0%
! GCTATGTTGCATTGATGGCT+CGG + chr1_2:55380672-55380691 None:intergenic 45.0%
GCAACATAGCGTGATGATTG+AGG - chr1_2:55380682-55380701 Msa0078090:CDS 45.0%
! AGCGAGGCATCATGCTTATA+GGG - chr1_2:55380789-55380808 Msa0078090:intron 45.0%
ATGCTTATAGGGACTGCTCA+TGG - chr1_2:55380800-55380819 Msa0078090:intron 45.0%
TCTAAAGGCCTGCTTATACC+AGG - chr1_2:55381076-55381095 Msa0078090:intron 45.0%
CTAAAGGCCTGCTTATACCA+GGG - chr1_2:55381077-55381096 Msa0078090:intron 45.0%
CTTTAGACCCTGGTATAAGC+AGG + chr1_2:55381087-55381106 None:intergenic 45.0%
CTGCTTATACCAGGGTCTAA+AGG - chr1_2:55381085-55381104 Msa0078090:intron 45.0%
TAACTCTAGTCAGAGGATGC+TGG - chr1_2:55381159-55381178 Msa0078090:intron 45.0%
ACACTACTGGGTTACACATC+AGG - chr1_2:55381508-55381527 Msa0078090:intron 45.0%
! TACATTTGGTGAAGGGCTTC+TGG - chr1_2:55381693-55381712 Msa0078090:intron 45.0%
CAGAAAACGGTGGGATGATA+TGG + chr1_2:55381870-55381889 None:intergenic 45.0%
!! CATTGGCTCAAAGCTCAATG+TGG - chr1_2:55381995-55382014 Msa0078090:intron 45.0%
AGGAAAAGACCAACCATGCT+AGG + chr1_2:55382551-55382570 None:intergenic 45.0%
!!! CATGGTTGGTCTTTTCCTCA+TGG - chr1_2:55382553-55382572 Msa0078090:CDS 45.0%
GACGGGAAGAATGAGAATTC+GGG + chr1_2:55382585-55382604 None:intergenic 45.0%
GGACGGGAAGAATGAGAATT+CGG + chr1_2:55382586-55382605 None:intergenic 45.0%
TCATTCTTCCCGTCCAAACT+AGG - chr1_2:55382591-55382610 Msa0078090:intron 45.0%
CACACACCAACTCTAAACCT+TGG + chr1_2:55382859-55382878 None:intergenic 45.0%
!!! CTTTCTAGGGCCACTTTTCT+GGG + chr1_2:55382978-55382997 None:intergenic 45.0%
!!! ACTTTCTAGGGCCACTTTTC+TGG + chr1_2:55382979-55382998 None:intergenic 45.0%
TTGTTTGTCCCGACAAACCT+AGG + chr1_2:55383350-55383369 None:intergenic 45.0%
ACCCGTGAAAAAAGGGGAAC+TGG - chr1_2:55378643-55378662 Msa0078090:three_prime_UTR 50.0%
!!! CCCAGTTCCCCTTTTTTCAC+GGG + chr1_2:55378647-55378666 None:intergenic 50.0%
CCCGTGAAAAAAGGGGAACT+GGG - chr1_2:55378644-55378663 Msa0078090:three_prime_UTR 50.0%
!!! CCCCAGTTCCCCTTTTTTCA+CGG + chr1_2:55378648-55378667 None:intergenic 50.0%
CCGTGAAAAAAGGGGAACTG+GGG - chr1_2:55378645-55378664 Msa0078090:three_prime_UTR 50.0%
CAGCAACAACAGCAGCATCA+TGG - chr1_2:55378736-55378755 Msa0078090:three_prime_UTR 50.0%
GTACCTGTAAGAGAGCTTGG+AGG + chr1_2:55378854-55378873 None:intergenic 50.0%
AAAGTTGAGGGCGGTTAGGT+TGG + chr1_2:55378975-55378994 None:intergenic 50.0%
! ACCTAACCGCCCTCAACTTT+TGG - chr1_2:55378975-55378994 Msa0078090:intron 50.0%
TCCAAAAGTTGAGGGCGGTT+AGG + chr1_2:55378979-55378998 None:intergenic 50.0%
! TAACCGCCCTCAACTTTTGG+AGG - chr1_2:55378978-55378997 Msa0078090:intron 50.0%
CTACCTCCAAAAGTTGAGGG+CGG + chr1_2:55378984-55379003 None:intergenic 50.0%
GGACCTACCTCCAAAAGTTG+AGG + chr1_2:55378988-55379007 None:intergenic 50.0%
TTGCCTAGATACCACGCTTC+AGG + chr1_2:55379209-55379228 None:intergenic 50.0%
GCGTGGTATCTAGGCAAACA+CGG - chr1_2:55379212-55379231 Msa0078090:intron 50.0%
GTGTGGAGGAATGTGTAGCT+AGG - chr1_2:55379498-55379517 Msa0078090:intron 50.0%
!! GTTGGTTTGACGTGTCGGAT+TGG - chr1_2:55379643-55379662 Msa0078090:intron 50.0%
! TTTGACGTGTCGGATTGGGA+GGG - chr1_2:55379648-55379667 Msa0078090:intron 50.0%
! GACTTGGTCGGTTCCATGTT+TGG - chr1_2:55379927-55379946 Msa0078090:intron 50.0%
TTTGGATTCTTCCAGGCCTG+GGG - chr1_2:55380400-55380419 Msa0078090:intron 50.0%
AAGCTGAAGCTCATGCATGC+CGG - chr1_2:55380756-55380775 Msa0078090:intron 50.0%
! GAGCGAGGCATCATGCTTAT+AGG - chr1_2:55380788-55380807 Msa0078090:intron 50.0%
TCGTAAAGGCCTTTAGACCC+TGG + chr1_2:55381097-55381116 None:intergenic 50.0%
GAATTCGGGCAAAAGCCATG+AGG + chr1_2:55382571-55382590 None:intergenic 50.0%
GAGAGATAATGCACACACGG+AGG + chr1_2:55383417-55383436 None:intergenic 50.0%
GAACACTGTGACTGTGGCTG+TGG + chr1_2:55378813-55378832 None:intergenic 55.0%
CGACCTCCAAGCTCTCTTAC+AGG - chr1_2:55378848-55378867 Msa0078090:three_prime_UTR 55.0%
!! CGCCCTCAACTTTTGGAGGT+AGG - chr1_2:55378982-55379001 Msa0078090:intron 55.0%
! GTTTGACGTGTCGGATTGGG+AGG - chr1_2:55379647-55379666 Msa0078090:intron 55.0%
! ACAGTAGTCTTGCCAACCCC+AGG + chr1_2:55380419-55380438 None:intergenic 55.0%
GCACCACCTATTGCTGCATG+AGG + chr1_2:55380632-55380651 None:intergenic 55.0%
AGGTGGTGCACGTAGAATGC+AGG - chr1_2:55380643-55380662 Msa0078090:CDS 55.0%
GAATCCTACGCTCTCTGACC+TGG - chr1_2:55380847-55380866 Msa0078090:intron 55.0%
AGGGGAACTGGGGATAAGGG+TGG - chr1_2:55378655-55378674 Msa0078090:three_prime_UTR 60.0%
GGGGAACTGGGGATAAGGGT+GGG - chr1_2:55378656-55378675 Msa0078090:three_prime_UTR 60.0%
!! TGGGCCGTTTTCCTGAAGCG+TGG - chr1_2:55379195-55379214 Msa0078090:intron 60.0%
GATTCTTCCAGGCCTGGGGT+TGG - chr1_2:55380404-55380423 Msa0078090:intron 60.0%
TGCCTCGCTCAGCAATCGAC+CGG + chr1_2:55380778-55380797 None:intergenic 60.0%
! CGAACCAGGTCAGAGAGCGT+AGG + chr1_2:55380854-55380873 None:intergenic 60.0%
AGGCAAGACCCCACAGGTTG+AGG - chr1_2:55382245-55382264 Msa0078090:intron 60.0%
CTGTGGCTGTGGCTGAGTCG+CGG + chr1_2:55378802-55378821 None:intergenic 65.0%
! CGGATTGGGAGGGCTGTCAC+TGG - chr1_2:55379658-55379677 Msa0078090:intron 65.0%
AGTCTTGCCAACCCCAGGCC+TGG + chr1_2:55380414-55380433 None:intergenic 65.0%
TGCCGGTCGATTGCTGAGCG+AGG - chr1_2:55380773-55380792 Msa0078090:intron 65.0%
GCTTCGAGGCAAGACCCCAC+AGG - chr1_2:55382239-55382258 Msa0078090:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55378601 55383496 55378601 ID=Msa0078090;Name=Msa0078090
chr1_2 mRNA 55378601 55383496 55378601 ID=Msa0078090-mRNA-1;Parent=Msa0078090;Name=Msa0078090-mRNA-1;_AED=0.14;_eAED=0.14;_QI=86|0.85|1|1|0.85|0.75|8|289|342
chr1_2 exon 55378601 55378704 55378601 ID=Msa0078090-mRNA-1:exon:17247;Parent=Msa0078090-mRNA-1
chr1_2 exon 55378732 55378988 55378732 ID=Msa0078090-mRNA-1:exon:17246;Parent=Msa0078090-mRNA-1
chr1_2 exon 55379831 55379881 55379831 ID=Msa0078090-mRNA-1:exon:17245;Parent=Msa0078090-mRNA-1
chr1_2 exon 55380568 55380711 55380568 ID=Msa0078090-mRNA-1:exon:17244;Parent=Msa0078090-mRNA-1
chr1_2 exon 55381229 55381513 55381229 ID=Msa0078090-mRNA-1:exon:17243;Parent=Msa0078090-mRNA-1
chr1_2 exon 55381610 55381682 55381610 ID=Msa0078090-mRNA-1:exon:17242;Parent=Msa0078090-mRNA-1
chr1_2 exon 55382357 55382577 55382357 ID=Msa0078090-mRNA-1:exon:17241;Parent=Msa0078090-mRNA-1
chr1_2 exon 55383228 55383496 55383228 ID=Msa0078090-mRNA-1:exon:17240;Parent=Msa0078090-mRNA-1
chr1_2 five_prime_UTR 55383411 55383496 55383411 ID=Msa0078090-mRNA-1:five_prime_utr;Parent=Msa0078090-mRNA-1
chr1_2 CDS 55383228 55383410 55383228 ID=Msa0078090-mRNA-1:cds;Parent=Msa0078090-mRNA-1
chr1_2 CDS 55382357 55382577 55382357 ID=Msa0078090-mRNA-1:cds;Parent=Msa0078090-mRNA-1
chr1_2 CDS 55381610 55381682 55381610 ID=Msa0078090-mRNA-1:cds;Parent=Msa0078090-mRNA-1
chr1_2 CDS 55381229 55381513 55381229 ID=Msa0078090-mRNA-1:cds;Parent=Msa0078090-mRNA-1
chr1_2 CDS 55380568 55380711 55380568 ID=Msa0078090-mRNA-1:cds;Parent=Msa0078090-mRNA-1
chr1_2 CDS 55379831 55379881 55379831 ID=Msa0078090-mRNA-1:cds;Parent=Msa0078090-mRNA-1
chr1_2 CDS 55378917 55378988 55378917 ID=Msa0078090-mRNA-1:cds;Parent=Msa0078090-mRNA-1
chr1_2 three_prime_UTR 55378732 55378916 55378732 ID=Msa0078090-mRNA-1:three_prime_utr;Parent=Msa0078090-mRNA-1
chr1_2 three_prime_UTR 55378601 55378704 55378601 ID=Msa0078090-mRNA-1:three_prime_utr;Parent=Msa0078090-mRNA-1
Gene Sequence

>Msa0078090

ATGATAGTTGCAAATGCAATGGCATGTTGGTCATGTTTGATGGCAGCAACAGCAACAACAGCAGCATCATGGAAATTGAAGTCACCACCGACCCTCAAATTCAAATGCTATGCCGCGACTCAGCCACAGCCACAGTCACAGTGTTCTCTTGTGCACAACGACGACCTCCAAGCTCTCTTACAGGTAACAATGAGAGAGTTGGAATATGCTGAAGGAGCAGTTGGAGATTTTGGGAAGGATAATAGAGCTGGTATTGAAGGTACTTTGCACAGAATATCAGCAATAAGGAGTAGGAATGGTGGCATTGTTGGTTTGACGTGTCGGATTGGGAGGGCTGTCACTGGCCATATTGACATGGTTTATGATCTGCTTCAATATGGCAAGAGCATTTTATTTCTTGGAAGGCCTGGGGTTGGCAAGACTACTGTTATGAGAGAGATTGCTCGTGTTCTGTCAGATGAATTTCACAAAAGAGTGGTGATTGTTGATACCAGTAATGAAATTGGAGGTGATGGCAATATTCCTCATGCAGCAATAGGTGGTGCACGTAGAATGCAGGTATCCGAGCCATCAATGCAACATAGCGTGATGATTGAGGCAGTAGAAAATCATATGCCTGAGGTGATTATAGTAGATGAGATTGGCACAGAAGCTGAAGCTCATGCATGCCGGTCGATTGCTGAGCGAGGCATCATGCTTATAGGGACTGCTCATGGACAGCAAATTGAGAATGTCATGAAGAATCCTACGCTCTCTGACCTGATTGGTGGAATTGAAAGTGTTACTCTGGGAGACTACGAAGCCAGAGCAAGAAAATGTCAGAAGACTATTCTTGAGAGGAAAGCTCCTCCAACATTTGATTTCTTGATTGAGATGAGAGATAGACACTACTGGGTTACACATCAGACCGACAAAAGCGTAGATATATTGCTTCGAGGCAAGACCCCACAGGTTGAGGTAAGAAAAAGAGATGAGAAATACAAGGTTGTGATCGAAAAATCTAAAGCATATGATAAGTGTCAAATTTGA

Protein sequence

>Msa0078090

MIVANAMACWSCLMAATATTAASWKLKSPPTLKFKCYAATQPQPQSQCSLVHNDDLQALLQVTMRELEYAEGAVGDFGKDNRAGIEGTLHRISAIRSRNGGIVGLTCRIGRAVTGHIDMVYDLLQYGKSILFLGRPGVGKTTVMREIARVLSDEFHKRVVIVDTSNEIGGDGNIPHAAIGGARRMQVSEPSMQHSVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGIMLIGTAHGQQIENVMKNPTLSDLIGGIESVTLGDYEARARKCQKTILERKAPPTFDFLIEMRDRHYWVTHQTDKSVDILLRGKTPQVEVRKRDEKYKVVIEKSKAYDKCQI*