Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012700 | Msa0102070 | 0.801504 | 8.729231e-49 | -8.615850e-47 |
| Msa0012700 | Msa0200000 | 0.813489 | 2.494436e-51 | -8.615850e-47 |
| Msa0012700 | Msa0227480 | 0.804780 | 1.833256e-49 | -8.615850e-47 |
| Msa0012700 | Msa0267000 | 0.826206 | 3.081239e-54 | -8.615850e-47 |
| Msa0012700 | Msa0267010 | 0.826631 | 2.440326e-54 | -8.615850e-47 |
| Msa0012700 | Msa0342240 | 0.813349 | 2.676872e-51 | -8.615850e-47 |
| Msa0012700 | Msa0366580 | 0.810357 | 1.200054e-50 | -8.615850e-47 |
| Msa0012700 | Msa0384800 | 0.810931 | 9.018592e-51 | -8.615850e-47 |
| Msa0012700 | Msa0406120 | 0.811009 | 8.672719e-51 | -8.615850e-47 |
| Msa0012700 | Msa0414420 | 0.816158 | 6.388860e-52 | -8.615850e-47 |
| Msa0012700 | Msa0438620 | 0.806177 | 9.334986e-50 | -8.615850e-47 |
| Msa0012700 | Msa0452900 | 0.853460 | 2.355310e-61 | -8.615850e-47 |
| Msa0012700 | Msa0453120 | 0.808580 | 2.888673e-50 | -8.615850e-47 |
| Msa0012700 | Msa0454370 | 0.813057 | 3.103390e-51 | -8.615850e-47 |
| Msa0012700 | Msa0491590 | 0.830223 | 3.313593e-55 | -8.615850e-47 |
| Msa0012700 | Msa0564890 | 0.801105 | 1.053533e-48 | -8.615850e-47 |
| Msa0012700 | Msa0678930 | 0.820281 | 7.452377e-53 | -8.615850e-47 |
| Msa0012700 | Msa0694370 | 0.820719 | 5.912921e-53 | -8.615850e-47 |
| Msa0012700 | Msa0726140 | 0.831487 | 1.623436e-55 | -8.615850e-47 |
| Msa0012700 | Msa0729800 | 0.851412 | 9.027623e-61 | -8.615850e-47 |
| Msa0012700 | Msa0733290 | 0.823822 | 1.126147e-53 | -8.615850e-47 |
| Msa0012700 | Msa0743810 | 0.830423 | 2.961358e-55 | -8.615850e-47 |
| Msa0012700 | Msa0745060 | 0.834707 | 2.564800e-56 | -8.615850e-47 |
| Msa0012700 | Msa0787600 | 0.834376 | 3.107425e-56 | -8.615850e-47 |
| Msa0012700 | Msa0808010 | 0.824873 | 6.375533e-54 | -8.615850e-47 |
| Msa0012700 | Msa0808020 | 0.810186 | 1.306613e-50 | -8.615850e-47 |
| Msa0012700 | Msa0825860 | 0.850727 | 1.408668e-60 | -8.615850e-47 |
| Msa0012700 | Msa0846330 | 0.827481 | 1.527776e-54 | -8.615850e-47 |
| Msa0012700 | Msa0846350 | 0.818738 | 1.675495e-52 | -8.615850e-47 |
| Msa0012700 | Msa0848960 | 0.807539 | 4.812198e-50 | -8.615850e-47 |
| Msa0012700 | Msa0865320 | 0.832092 | 1.151449e-55 | -8.615850e-47 |
| Msa0012700 | Msa0888370 | 0.834257 | 3.328540e-56 | -8.615850e-47 |
| Msa0012700 | Msa1016280 | 0.838823 | 2.287770e-57 | -8.615850e-47 |
| Msa0012700 | Msa1025360 | 0.827663 | 1.381913e-54 | -8.615850e-47 |
| Msa0012700 | Msa1025370 | 0.841827 | 3.752114e-58 | -8.615850e-47 |
| Msa0012700 | Msa1044830 | 0.843782 | 1.133443e-58 | -8.615850e-47 |
| Msa0012700 | Msa1044840 | 0.823442 | 1.382261e-53 | -8.615850e-47 |
| Msa0012700 | Msa1092990 | 0.811877 | 5.619573e-51 | -8.615850e-47 |
| Msa0012700 | Msa1100980 | 0.838511 | 2.754270e-57 | -8.615850e-47 |
| Msa0012700 | Msa1109440 | 0.819303 | 1.246403e-52 | -8.615850e-47 |
| Msa0012700 | Msa1121200 | 0.820109 | 8.161017e-53 | -8.615850e-47 |
| Msa0012700 | Msa1135740 | 0.836088 | 1.148651e-56 | -8.615850e-47 |
| Msa0012700 | Msa1146110 | 0.819463 | 1.146172e-52 | -8.615850e-47 |
| Msa0012700 | Msa1187940 | 0.815980 | 6.999105e-52 | -8.615850e-47 |
| Msa0012700 | Msa1192640 | 0.813162 | 2.943146e-51 | -8.615850e-47 |
| Msa0012700 | Msa1269670 | 0.834301 | 3.243345e-56 | -8.615850e-47 |
| Msa0012700 | Msa1270230 | 0.833878 | 4.140820e-56 | -8.615850e-47 |
| Msa0012700 | Msa1270270 | 0.806338 | 8.634386e-50 | -8.615850e-47 |
| Msa0012700 | Msa1283330 | 0.817647 | 2.959248e-52 | -8.615850e-47 |
| Msa0012700 | Msa1285930 | 0.816635 | 4.994826e-52 | -8.615850e-47 |
| Msa0012700 | Msa1287800 | 0.830872 | 2.299690e-55 | -8.615850e-47 |
| Msa0012700 | Msa1287810 | 0.845027 | 5.244969e-59 | -8.615850e-47 |
| Msa0012700 | Msa1340590 | 0.851626 | 7.852529e-61 | -8.615850e-47 |
| Msa0012700 | Msa1397580 | 0.845422 | 4.102106e-59 | -8.615850e-47 |
| Msa0012700 | Msa1404000 | 0.820918 | 5.320257e-53 | -8.615850e-47 |
| Msa0012700 | Msa1415310 | 0.830802 | 2.391996e-55 | -8.615850e-47 |
| Msa0012700 | Msa1422180 | 0.849844 | 2.490470e-60 | -8.615850e-47 |
| Msa0012700 | Msa1433120 | 0.801424 | 9.061704e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012700 | MtrunA17_Chr8g0359031 | 46.364 | 110 | 58 | 1 | 11 | 120 | 38 | 146 | 9.19e-34 | 115 |
| Msa0012700 | MtrunA17_Chr5g0393511 | 45.133 | 113 | 55 | 2 | 11 | 120 | 38 | 146 | 2.24e-32 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAGGTGGTGATTCATTC+TGG | 0.321260 | 1_1:-19143512 | Msa0012700:CDS |
| GTTTAAGATGGACAGTAATC+CGG | 0.386700 | 1_1:-19143163 | None:intergenic |
| TACATTTGTTGAAGCGAGTA+AGG | 0.420870 | 1_1:-19143208 | Msa0012700:CDS |
| AAGATGCAGTTGATGCGATT+TGG | 0.438269 | 1_1:-19143293 | Msa0012700:CDS |
| AATGTCAGAGTTTCTTTCCC+AGG | 0.450747 | 1_1:+19143336 | None:intergenic |
| AGACATGGAGGAACCGGTAT+TGG | 0.457153 | 1_1:+19143554 | None:intergenic |
| TGAATGTTCGAACAAATTCA+TGG | 0.458298 | 1_1:-19143532 | Msa0012700:CDS |
| CGAATTCCATTCCACATCAA+TGG | 0.458515 | 1_1:-19143372 | Msa0012700:CDS |
| TGACAGATTGTTGTTTAAGA+TGG | 0.463808 | 1_1:-19143175 | Msa0012700:CDS |
| ACATTCAGACATGGAGGAAC+CGG | 0.479236 | 1_1:+19143548 | None:intergenic |
| GCAGGTTCTACATCAATTTG+AGG | 0.490886 | 1_1:+19143593 | None:intergenic |
| TTTAAGATGGACAGTAATCC+GGG | 0.497303 | 1_1:-19143162 | None:intergenic |
| AAAGATCCATTGATGTGGAA+TGG | 0.510519 | 1_1:+19143366 | None:intergenic |
| TATGTGCAGAAGAAATTCAT+AGG | 0.511115 | 1_1:-19143243 | Msa0012700:CDS |
| GGCTCACGGTAATCATCTGC+AGG | 0.521858 | 1_1:+19143575 | None:intergenic |
| TGCAGAAGAAATTCATAGGA+AGG | 0.530136 | 1_1:-19143239 | Msa0012700:CDS |
| TAGATTACCAGCTTATGAGT+TGG | 0.533749 | 1_1:+19143479 | None:intergenic |
| TTCTTCTGCACATAATCACC+AGG | 0.548008 | 1_1:+19143252 | None:intergenic |
| TTTACGTCCAACTCATAAGC+TGG | 0.553121 | 1_1:-19143486 | Msa0012700:intron |
| CAGAAGAAATTCATAGGAAG+GGG | 0.562018 | 1_1:-19143237 | Msa0012700:CDS |
| TGATTACCGTGAGCCAATAC+CGG | 0.564459 | 1_1:-19143567 | Msa0012700:CDS |
| AGAAACTCTGACATTGACAT+TGG | 0.565067 | 1_1:-19143328 | Msa0012700:CDS |
| AGAAATTCATAGGAAGGGGT+TGG | 0.574152 | 1_1:-19143233 | Msa0012700:CDS |
| TCGAACAAATTCATGGGAGG+TGG | 0.578409 | 1_1:-19143525 | Msa0012700:CDS |
| GAAGCGAGTAAGGTGAAAGT+TGG | 0.578483 | 1_1:-19143198 | Msa0012700:CDS |
| GCAGAAGAAATTCATAGGAA+GGG | 0.580030 | 1_1:-19143238 | Msa0012700:CDS |
| GAATGTTCGAACAAATTCAT+GGG | 0.580892 | 1_1:-19143531 | Msa0012700:CDS |
| CACGAAAAGATCCATTGATG+TGG | 0.608405 | 1_1:+19143361 | None:intergenic |
| TTTGTTCGAACATTCAGACA+TGG | 0.613761 | 1_1:+19143539 | None:intergenic |
| TGTGATATTGATGTTGAACC+TGG | 0.629607 | 1_1:-19143270 | Msa0012700:CDS |
| GAGGAACCGGTATTGGCTCA+CGG | 0.632876 | 1_1:+19143561 | None:intergenic |
| GTTCGAACATTCAGACATGG+AGG | 0.688432 | 1_1:+19143542 | None:intergenic |
| TGTTCGAACAAATTCATGGG+AGG | 0.689256 | 1_1:-19143528 | Msa0012700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTATGGTATAATTAAAA+AGG | - | chr1_1:19143190-19143209 | Msa0012700:CDS | 15.0% |
| !! | TAGTTAAAATTGTTAAAGAA+AGG | - | chr1_1:19143284-19143303 | Msa0012700:CDS | 15.0% |
| !! | AAAATAGTAATATATGAGTT+GGG | - | chr1_1:19143361-19143380 | Msa0012700:CDS | 15.0% |
| !! | ACTTTATGGTATAATTAAAA+AGG | - | chr1_1:19143190-19143209 | Msa0012700:CDS | 15.0% |
| !! | TAGTTAAAATTGTTAAAGAA+AGG | - | chr1_1:19143284-19143303 | Msa0012700:CDS | 15.0% |
| !! | AAAATAGTAATATATGAGTT+GGG | - | chr1_1:19143361-19143380 | Msa0012700:CDS | 15.0% |
| !! | TAAAGAGGTAATAAACTTTA+TGG | - | chr1_1:19143176-19143195 | Msa0012700:CDS | 20.0% |
| !! | GAAAATAGTAATATATGAGT+TGG | - | chr1_1:19143360-19143379 | Msa0012700:CDS | 20.0% |
| !! | TATATAAGTTGCTATGTATT+AGG | - | chr1_1:19143509-19143528 | Msa0012700:CDS | 20.0% |
| !! | AATATCAAGTCAACATAAAA+TGG | + | chr1_1:19143627-19143646 | None:intergenic | 20.0% |
| !! | TAAAGAGGTAATAAACTTTA+TGG | - | chr1_1:19143176-19143195 | Msa0012700:CDS | 20.0% |
| !! | GAAAATAGTAATATATGAGT+TGG | - | chr1_1:19143360-19143379 | Msa0012700:CDS | 20.0% |
| !! | TATATAAGTTGCTATGTATT+AGG | - | chr1_1:19143509-19143528 | Msa0012700:CDS | 20.0% |
| !! | AATATCAAGTCAACATAAAA+TGG | + | chr1_1:19143627-19143646 | None:intergenic | 20.0% |
| ! | AAAATTATTGAAAGGGAAAG+AGG | - | chr1_1:19143254-19143273 | Msa0012700:CDS | 25.0% |
| ! | AAATTATTGAAAGGGAAAGA+GGG | - | chr1_1:19143255-19143274 | Msa0012700:CDS | 25.0% |
| ! | AAGGTAAAAAGCGAAAAATA+AGG | - | chr1_1:19143303-19143322 | Msa0012700:CDS | 25.0% |
| ! | GTTGAATAATATAGCAAAAG+TGG | - | chr1_1:19143334-19143353 | Msa0012700:CDS | 25.0% |
| !! | TTTGAAACTTAAAACTTGCT+GGG | + | chr1_1:19143408-19143427 | None:intergenic | 25.0% |
| !! | ATTTGAAACTTAAAACTTGC+TGG | + | chr1_1:19143409-19143428 | None:intergenic | 25.0% |
| !!! | GCAAGTTTTAAGTTTCAAAT+CGG | - | chr1_1:19143409-19143428 | Msa0012700:intron | 25.0% |
| !!! | CAAGTTTTAAGTTTCAAATC+GGG | - | chr1_1:19143410-19143429 | Msa0012700:intron | 25.0% |
| ! | TGAAGAGGTAATAAACTTTA+TGG | - | chr1_1:19143574-19143593 | Msa0012700:CDS | 25.0% |
| ! | AAAATTATTGAAAGGGAAAG+AGG | - | chr1_1:19143254-19143273 | Msa0012700:CDS | 25.0% |
| ! | AAATTATTGAAAGGGAAAGA+GGG | - | chr1_1:19143255-19143274 | Msa0012700:CDS | 25.0% |
| ! | AAGGTAAAAAGCGAAAAATA+AGG | - | chr1_1:19143303-19143322 | Msa0012700:CDS | 25.0% |
| ! | GTTGAATAATATAGCAAAAG+TGG | - | chr1_1:19143334-19143353 | Msa0012700:CDS | 25.0% |
| !! | TTTGAAACTTAAAACTTGCT+GGG | + | chr1_1:19143408-19143427 | None:intergenic | 25.0% |
| !! | ATTTGAAACTTAAAACTTGC+TGG | + | chr1_1:19143409-19143428 | None:intergenic | 25.0% |
| !!! | GCAAGTTTTAAGTTTCAAAT+CGG | - | chr1_1:19143409-19143428 | Msa0012700:intron | 25.0% |
| !!! | CAAGTTTTAAGTTTCAAATC+GGG | - | chr1_1:19143410-19143429 | Msa0012700:intron | 25.0% |
| ! | TGAAGAGGTAATAAACTTTA+TGG | - | chr1_1:19143574-19143593 | Msa0012700:CDS | 25.0% |
| GTAAAAAGCGAAAAATAAGG+AGG | - | chr1_1:19143306-19143325 | Msa0012700:CDS | 30.0% | |
| !! | TTGAAACTTAAAACTTGCTG+GGG | + | chr1_1:19143407-19143426 | None:intergenic | 30.0% |
| TTGTAACTCTGTTATGAGAA+TGG | - | chr1_1:19143545-19143564 | Msa0012700:CDS | 30.0% | |
| CAATATTCGAATGAAGAATG+AGG | - | chr1_1:19143696-19143715 | Msa0012700:intron | 30.0% | |
| TGAATGTTCGAACAAATTCA+TGG | - | chr1_1:19143793-19143812 | Msa0012700:intron | 30.0% | |
| GAATGTTCGAACAAATTCAT+GGG | - | chr1_1:19143794-19143813 | Msa0012700:intron | 30.0% | |
| TATGTGCAGAAGAAATTCAT+AGG | - | chr1_1:19144082-19144101 | Msa0012700:intron | 30.0% | |
| !! | TGACAGATTGTTGTTTAAGA+TGG | - | chr1_1:19144150-19144169 | Msa0012700:intron | 30.0% |
| CCTCTTTAATTATTACCCAT+CGG | + | chr1_1:19143164-19143183 | None:intergenic | 30.0% | |
| GTAAAAAGCGAAAAATAAGG+AGG | - | chr1_1:19143306-19143325 | Msa0012700:CDS | 30.0% | |
| !! | TTGAAACTTAAAACTTGCTG+GGG | + | chr1_1:19143407-19143426 | None:intergenic | 30.0% |
| TTGTAACTCTGTTATGAGAA+TGG | - | chr1_1:19143545-19143564 | Msa0012700:CDS | 30.0% | |
| CAATATTCGAATGAAGAATG+AGG | - | chr1_1:19143696-19143715 | Msa0012700:intron | 30.0% | |
| TGAATGTTCGAACAAATTCA+TGG | - | chr1_1:19143793-19143812 | Msa0012700:intron | 30.0% | |
| GAATGTTCGAACAAATTCAT+GGG | - | chr1_1:19143794-19143813 | Msa0012700:intron | 30.0% | |
| TATGTGCAGAAGAAATTCAT+AGG | - | chr1_1:19144082-19144101 | Msa0012700:intron | 30.0% | |
| !! | TGACAGATTGTTGTTTAAGA+TGG | - | chr1_1:19144150-19144169 | Msa0012700:intron | 30.0% |
| AAAAGCGAAAAATAAGGAGG+TGG | - | chr1_1:19143309-19143328 | Msa0012700:CDS | 35.0% | |
| AAAGCGAAAAATAAGGAGGT+GGG | - | chr1_1:19143310-19143329 | Msa0012700:CDS | 35.0% | |
| TTTGTTCGAACATTCAGACA+TGG | + | chr1_1:19143789-19143808 | None:intergenic | 35.0% | |
| TAGATTACCAGCTTATGAGT+TGG | + | chr1_1:19143849-19143868 | None:intergenic | 35.0% | |
| AAAGATCCATTGATGTGGAA+TGG | + | chr1_1:19143962-19143981 | None:intergenic | 35.0% | |
| AGAAACTCTGACATTGACAT+TGG | - | chr1_1:19143997-19144016 | Msa0012700:intron | 35.0% | |
| TGTGATATTGATGTTGAACC+TGG | - | chr1_1:19144055-19144074 | Msa0012700:intron | 35.0% | |
| TGCAGAAGAAATTCATAGGA+AGG | - | chr1_1:19144086-19144105 | Msa0012700:intron | 35.0% | |
| GCAGAAGAAATTCATAGGAA+GGG | - | chr1_1:19144087-19144106 | Msa0012700:intron | 35.0% | |
| CAGAAGAAATTCATAGGAAG+GGG | - | chr1_1:19144088-19144107 | Msa0012700:intron | 35.0% | |
| ! | TACATTTGTTGAAGCGAGTA+AGG | - | chr1_1:19144117-19144136 | Msa0012700:intron | 35.0% |
| AAAAGCGAAAAATAAGGAGG+TGG | - | chr1_1:19143309-19143328 | Msa0012700:CDS | 35.0% | |
| AAAGCGAAAAATAAGGAGGT+GGG | - | chr1_1:19143310-19143329 | Msa0012700:CDS | 35.0% | |
| TTTGTTCGAACATTCAGACA+TGG | + | chr1_1:19143789-19143808 | None:intergenic | 35.0% | |
| TAGATTACCAGCTTATGAGT+TGG | + | chr1_1:19143849-19143868 | None:intergenic | 35.0% | |
| AAAGATCCATTGATGTGGAA+TGG | + | chr1_1:19143962-19143981 | None:intergenic | 35.0% | |
| AGAAACTCTGACATTGACAT+TGG | - | chr1_1:19143997-19144016 | Msa0012700:intron | 35.0% | |
| TGTGATATTGATGTTGAACC+TGG | - | chr1_1:19144055-19144074 | Msa0012700:intron | 35.0% | |
| TGCAGAAGAAATTCATAGGA+AGG | - | chr1_1:19144086-19144105 | Msa0012700:intron | 35.0% | |
| GCAGAAGAAATTCATAGGAA+GGG | - | chr1_1:19144087-19144106 | Msa0012700:intron | 35.0% | |
| CAGAAGAAATTCATAGGAAG+GGG | - | chr1_1:19144088-19144107 | Msa0012700:intron | 35.0% | |
| ! | TACATTTGTTGAAGCGAGTA+AGG | - | chr1_1:19144117-19144136 | Msa0012700:intron | 35.0% |
| AAGCGAAAAATAAGGAGGTG+GGG | - | chr1_1:19143311-19143330 | Msa0012700:CDS | 40.0% | |
| CATAACAGAGTTACAAGCTG+TGG | + | chr1_1:19143541-19143560 | None:intergenic | 40.0% | |
| TGAGAATGGCAACATTGAAG+AGG | - | chr1_1:19143559-19143578 | Msa0012700:CDS | 40.0% | |
| GCAGGTTCTACATCAATTTG+AGG | + | chr1_1:19143735-19143754 | None:intergenic | 40.0% | |
| TGTTCGAACAAATTCATGGG+AGG | - | chr1_1:19143797-19143816 | Msa0012700:intron | 40.0% | |
| TTTACGTCCAACTCATAAGC+TGG | - | chr1_1:19143839-19143858 | Msa0012700:intron | 40.0% | |
| CGAATTCCATTCCACATCAA+TGG | - | chr1_1:19143953-19143972 | Msa0012700:intron | 40.0% | |
| CACGAAAAGATCCATTGATG+TGG | + | chr1_1:19143967-19143986 | None:intergenic | 40.0% | |
| ! | AATGGATCTTTTCGTGAACC+TGG | - | chr1_1:19143971-19143990 | Msa0012700:intron | 40.0% |
| ! | ATGGATCTTTTCGTGAACCT+GGG | - | chr1_1:19143972-19143991 | Msa0012700:intron | 40.0% |
| AATGTCAGAGTTTCTTTCCC+AGG | + | chr1_1:19143992-19144011 | None:intergenic | 40.0% | |
| ! | AAGATGCAGTTGATGCGATT+TGG | - | chr1_1:19144032-19144051 | Msa0012700:intron | 40.0% |
| TTCTTCTGCACATAATCACC+AGG | + | chr1_1:19144076-19144095 | None:intergenic | 40.0% | |
| AGAAATTCATAGGAAGGGGT+TGG | - | chr1_1:19144092-19144111 | Msa0012700:intron | 40.0% | |
| AAGCGAAAAATAAGGAGGTG+GGG | - | chr1_1:19143311-19143330 | Msa0012700:CDS | 40.0% | |
| CATAACAGAGTTACAAGCTG+TGG | + | chr1_1:19143541-19143560 | None:intergenic | 40.0% | |
| TGAGAATGGCAACATTGAAG+AGG | - | chr1_1:19143559-19143578 | Msa0012700:CDS | 40.0% | |
| GCAGGTTCTACATCAATTTG+AGG | + | chr1_1:19143735-19143754 | None:intergenic | 40.0% | |
| TGTTCGAACAAATTCATGGG+AGG | - | chr1_1:19143797-19143816 | Msa0012700:intron | 40.0% | |
| TTTACGTCCAACTCATAAGC+TGG | - | chr1_1:19143839-19143858 | Msa0012700:intron | 40.0% | |
| CGAATTCCATTCCACATCAA+TGG | - | chr1_1:19143953-19143972 | Msa0012700:intron | 40.0% | |
| CACGAAAAGATCCATTGATG+TGG | + | chr1_1:19143967-19143986 | None:intergenic | 40.0% | |
| ! | AATGGATCTTTTCGTGAACC+TGG | - | chr1_1:19143971-19143990 | Msa0012700:intron | 40.0% |
| ! | ATGGATCTTTTCGTGAACCT+GGG | - | chr1_1:19143972-19143991 | Msa0012700:intron | 40.0% |
| AATGTCAGAGTTTCTTTCCC+AGG | + | chr1_1:19143992-19144011 | None:intergenic | 40.0% | |
| ! | AAGATGCAGTTGATGCGATT+TGG | - | chr1_1:19144032-19144051 | Msa0012700:intron | 40.0% |
| TTCTTCTGCACATAATCACC+AGG | + | chr1_1:19144076-19144095 | None:intergenic | 40.0% | |
| AGAAATTCATAGGAAGGGGT+TGG | - | chr1_1:19144092-19144111 | Msa0012700:intron | 40.0% | |
| AGCGAAAAATAAGGAGGTGG+GGG | - | chr1_1:19143312-19143331 | Msa0012700:CDS | 45.0% | |
| CTTCTCTACATCAACCTTGC+TGG | + | chr1_1:19143673-19143692 | None:intergenic | 45.0% | |
| GAAGAATGAGGAAGTTCTGC+AGG | - | chr1_1:19143708-19143727 | Msa0012700:intron | 45.0% | |
| TGATTACCGTGAGCCAATAC+CGG | - | chr1_1:19143758-19143777 | Msa0012700:intron | 45.0% | |
| ACATTCAGACATGGAGGAAC+CGG | + | chr1_1:19143780-19143799 | None:intergenic | 45.0% | |
| GTTCGAACATTCAGACATGG+AGG | + | chr1_1:19143786-19143805 | None:intergenic | 45.0% | |
| TCGAACAAATTCATGGGAGG+TGG | - | chr1_1:19143800-19143819 | Msa0012700:intron | 45.0% | |
| GAAGCGAGTAAGGTGAAAGT+TGG | - | chr1_1:19144127-19144146 | Msa0012700:intron | 45.0% | |
| AGCGAAAAATAAGGAGGTGG+GGG | - | chr1_1:19143312-19143331 | Msa0012700:CDS | 45.0% | |
| CTTCTCTACATCAACCTTGC+TGG | + | chr1_1:19143673-19143692 | None:intergenic | 45.0% | |
| GAAGAATGAGGAAGTTCTGC+AGG | - | chr1_1:19143708-19143727 | Msa0012700:intron | 45.0% | |
| TGATTACCGTGAGCCAATAC+CGG | - | chr1_1:19143758-19143777 | Msa0012700:intron | 45.0% | |
| ACATTCAGACATGGAGGAAC+CGG | + | chr1_1:19143780-19143799 | None:intergenic | 45.0% | |
| GTTCGAACATTCAGACATGG+AGG | + | chr1_1:19143786-19143805 | None:intergenic | 45.0% | |
| TCGAACAAATTCATGGGAGG+TGG | - | chr1_1:19143800-19143819 | Msa0012700:intron | 45.0% | |
| GAAGCGAGTAAGGTGAAAGT+TGG | - | chr1_1:19144127-19144146 | Msa0012700:intron | 45.0% | |
| !! | ATAATAATAAAATTATTGAA+AGG | - | chr1_1:19143246-19143265 | Msa0012700:CDS | 5.0% |
| !! | TAATAATAAAATTATTGAAA+GGG | - | chr1_1:19143247-19143266 | Msa0012700:CDS | 5.0% |
| !! | ATAAAAATAACATAAAATAA+GGG | + | chr1_1:19143880-19143899 | None:intergenic | 5.0% |
| !! | TATAAAAATAACATAAAATA+AGG | + | chr1_1:19143881-19143900 | None:intergenic | 5.0% |
| !! | ATAATAATAAAATTATTGAA+AGG | - | chr1_1:19143246-19143265 | Msa0012700:CDS | 5.0% |
| !! | TAATAATAAAATTATTGAAA+GGG | - | chr1_1:19143247-19143266 | Msa0012700:CDS | 5.0% |
| !! | ATAAAAATAACATAAAATAA+GGG | + | chr1_1:19143880-19143899 | None:intergenic | 5.0% |
| !! | TATAAAAATAACATAAAATA+AGG | + | chr1_1:19143881-19143900 | None:intergenic | 5.0% |
| GAGTTGGGCCATAACACAGA+CGG | - | chr1_1:19143376-19143395 | Msa0012700:intron | 50.0% | |
| AGTTGGGCCATAACACAGAC+GGG | - | chr1_1:19143377-19143396 | Msa0012700:intron | 50.0% | |
| AGACATGGAGGAACCGGTAT+TGG | + | chr1_1:19143774-19143793 | None:intergenic | 50.0% | |
| TGGGAGGTGGTGATTCATTC+TGG | - | chr1_1:19143813-19143832 | Msa0012700:intron | 50.0% | |
| GAGTTGGGCCATAACACAGA+CGG | - | chr1_1:19143376-19143395 | Msa0012700:intron | 50.0% | |
| AGTTGGGCCATAACACAGAC+GGG | - | chr1_1:19143377-19143396 | Msa0012700:intron | 50.0% | |
| AGACATGGAGGAACCGGTAT+TGG | + | chr1_1:19143774-19143793 | None:intergenic | 50.0% | |
| TGGGAGGTGGTGATTCATTC+TGG | - | chr1_1:19143813-19143832 | Msa0012700:intron | 50.0% | |
| TTACTGCAGCGAGTCCAGCA+AGG | - | chr1_1:19143656-19143675 | Msa0012700:intron | 55.0% | |
| GGCTCACGGTAATCATCTGC+AGG | + | chr1_1:19143753-19143772 | None:intergenic | 55.0% | |
| !! | GAGGAACCGGTATTGGCTCA+CGG | + | chr1_1:19143767-19143786 | None:intergenic | 55.0% |
| TTACTGCAGCGAGTCCAGCA+AGG | - | chr1_1:19143656-19143675 | Msa0012700:intron | 55.0% | |
| GGCTCACGGTAATCATCTGC+AGG | + | chr1_1:19143753-19143772 | None:intergenic | 55.0% | |
| !! | GAGGAACCGGTATTGGCTCA+CGG | + | chr1_1:19143767-19143786 | None:intergenic | 55.0% |
| GGGCCATAACACAGACGGGT+CGG | - | chr1_1:19143381-19143400 | Msa0012700:intron | 60.0% | |
| GGGCCATAACACAGACGGGT+CGG | - | chr1_1:19143381-19143400 | Msa0012700:intron | 60.0% | |
| GGGCCGACCCGTCTGTGTTA+TGG | + | chr1_1:19143387-19143406 | None:intergenic | 65.0% | |
| GGGCCGACCCGTCTGTGTTA+TGG | + | chr1_1:19143387-19143406 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 19143164 | 19144183 | 19143164 | ID=Msa0012700;Name=Msa0012700 |
| chr1_1 | mRNA | 19143164 | 19144183 | 19143164 | ID=Msa0012700-mRNA-1;Parent=Msa0012700;Name=Msa0012700-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.66|1|1|3|0|122 |
| chr1_1 | exon | 19144180 | 19144183 | 19144180 | ID=Msa0012700-mRNA-1:exon:7036;Parent=Msa0012700-mRNA-1 |
| chr1_1 | exon | 19143487 | 19143617 | 19143487 | ID=Msa0012700-mRNA-1:exon:7035;Parent=Msa0012700-mRNA-1 |
| chr1_1 | exon | 19143164 | 19143394 | 19143164 | ID=Msa0012700-mRNA-1:exon:7034;Parent=Msa0012700-mRNA-1 |
| chr1_1 | CDS | 19144180 | 19144183 | 19144180 | ID=Msa0012700-mRNA-1:cds;Parent=Msa0012700-mRNA-1 |
| chr1_1 | CDS | 19143487 | 19143617 | 19143487 | ID=Msa0012700-mRNA-1:cds;Parent=Msa0012700-mRNA-1 |
| chr1_1 | CDS | 19143164 | 19143394 | 19143164 | ID=Msa0012700-mRNA-1:cds;Parent=Msa0012700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
