Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454370 | MCI06693.1 | 51.538 | 130 | 61 | 1 | 1 | 128 | 78 | 207 | 2.60e-39 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454370 | sp|Q71BH1|TM2S_SOLLC | 42.697 | 89 | 47 | 2 | 6 | 92 | 242 | 328 | 7.99e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454370 | A0A392P3Q5 | 51.538 | 130 | 61 | 1 | 1 | 128 | 78 | 207 | 1.24e-39 | 142 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012700 | Msa0454370 | 0.813057 | 3.103390e-51 | -8.615850e-47 |
| Msa0016570 | Msa0454370 | 0.809074 | 2.265072e-50 | -8.615850e-47 |
| Msa0102070 | Msa0454370 | 0.828659 | 7.950171e-55 | -8.615850e-47 |
| Msa0124100 | Msa0454370 | 0.813663 | 2.284443e-51 | -8.615850e-47 |
| Msa0142220 | Msa0454370 | 0.804545 | 2.052091e-49 | -8.615850e-47 |
| Msa0145750 | Msa0454370 | 0.810471 | 1.133713e-50 | -8.615850e-47 |
| Msa0200000 | Msa0454370 | 0.823993 | 1.026775e-53 | -8.615850e-47 |
| Msa0227480 | Msa0454370 | 0.834464 | 2.952516e-56 | -8.615850e-47 |
| Msa0365500 | Msa0454370 | 0.818786 | 1.634178e-52 | -8.615850e-47 |
| Msa0384800 | Msa0454370 | 0.817040 | 4.052758e-52 | -8.615850e-47 |
| Msa0394970 | Msa0454370 | 0.811262 | 7.644236e-51 | -8.615850e-47 |
| Msa0406120 | Msa0454370 | 0.811470 | 6.889417e-51 | -8.615850e-47 |
| Msa0414410 | Msa0454370 | 0.831819 | 1.344555e-55 | -8.615850e-47 |
| Msa0414420 | Msa0454370 | 0.858647 | 7.135879e-63 | -8.615850e-47 |
| Msa0438620 | Msa0454370 | 0.820063 | 8.361644e-53 | -8.615850e-47 |
| Msa0450000 | Msa0454370 | 0.804581 | 2.017143e-49 | -8.615850e-47 |
| Msa0452900 | Msa0454370 | 0.879955 | 8.162053e-70 | -8.615850e-47 |
| Msa0453120 | Msa0454370 | 0.829247 | 5.727228e-55 | -8.615850e-47 |
| Msa0454370 | Msa0454910 | 0.845999 | 2.859451e-59 | -8.615850e-47 |
| Msa0454370 | Msa0491590 | 0.844111 | 9.253198e-59 | -8.615850e-47 |
| Msa0454370 | Msa0502760 | 0.812347 | 4.437179e-51 | -8.615850e-47 |
| Msa0454370 | Msa0506270 | 0.836158 | 1.102732e-56 | -8.615850e-47 |
| Msa0454370 | Msa0534540 | 0.818223 | 2.192751e-52 | -8.615850e-47 |
| Msa0454370 | Msa0564890 | 0.844604 | 6.823108e-59 | -8.615850e-47 |
| Msa0454370 | Msa0596150 | 0.823921 | 1.067488e-53 | -8.615850e-47 |
| Msa0454370 | Msa0604350 | 0.826682 | 2.372286e-54 | -8.615850e-47 |
| Msa0454370 | Msa0636170 | 0.829321 | 5.494171e-55 | -8.615850e-47 |
| Msa0454370 | Msa0694370 | 0.812667 | 3.778733e-51 | -8.615850e-47 |
| Msa0454370 | Msa0725850 | 0.805799 | 1.121377e-49 | -8.615850e-47 |
| Msa0454370 | Msa0726140 | 0.837771 | 4.268878e-57 | -8.615850e-47 |
| Msa0454370 | Msa0729800 | 0.861832 | 7.775831e-64 | -8.615850e-47 |
| Msa0454370 | Msa0733290 | 0.833134 | 6.348922e-56 | -8.615850e-47 |
| Msa0454370 | Msa0743810 | 0.851338 | 9.469846e-61 | -8.615850e-47 |
| Msa0454370 | Msa0745060 | 0.863954 | 1.721094e-64 | -8.615850e-47 |
| Msa0454370 | Msa0767720 | 0.829847 | 4.093172e-55 | -8.615850e-47 |
| Msa0454370 | Msa0783160 | 0.834793 | 2.440077e-56 | -8.615850e-47 |
| Msa0454370 | Msa0787600 | 0.851314 | 9.620930e-61 | -8.615850e-47 |
| Msa0454370 | Msa0808010 | 0.842258 | 2.885631e-58 | -8.615850e-47 |
| Msa0454370 | Msa0808020 | 0.833557 | 4.980076e-56 | -8.615850e-47 |
| Msa0454370 | Msa0825860 | 0.868886 | 4.678186e-66 | -8.615850e-47 |
| Msa0454370 | Msa0833290 | 0.806160 | 9.415389e-50 | -8.615850e-47 |
| Msa0454370 | Msa0846330 | 0.823609 | 1.262981e-53 | -8.615850e-47 |
| Msa0454370 | Msa0846350 | 0.820935 | 5.273653e-53 | -8.615850e-47 |
| Msa0454370 | Msa0848960 | 0.822287 | 2.567316e-53 | -8.615850e-47 |
| Msa0454370 | Msa0858980 | 0.832730 | 8.001157e-56 | -8.615850e-47 |
| Msa0454370 | Msa0865320 | 0.852612 | 4.117435e-61 | -8.615850e-47 |
| Msa0454370 | Msa0885290 | 0.801444 | 8.979136e-49 | -8.615850e-47 |
| Msa0454370 | Msa0888370 | 0.819692 | 1.016535e-52 | -8.615850e-47 |
| Msa0454370 | Msa0981370 | 0.801081 | 1.065431e-48 | -8.615850e-47 |
| Msa0454370 | Msa0989060 | 0.821395 | 4.130311e-53 | -8.615850e-47 |
| Msa0454370 | Msa1016280 | 0.849385 | 3.344923e-60 | -8.615850e-47 |
| Msa0454370 | Msa1024240 | 0.825395 | 4.799794e-54 | -8.615850e-47 |
| Msa0454370 | Msa1025360 | 0.864336 | 1.308096e-64 | -8.615850e-47 |
| Msa0454370 | Msa1025370 | 0.881870 | 1.675380e-70 | -8.615850e-47 |
| Msa0454370 | Msa1044830 | 0.887409 | 1.463897e-72 | -8.615850e-47 |
| Msa0454370 | Msa1044840 | 0.855997 | 4.331178e-62 | -8.615850e-47 |
| Msa0454370 | Msa1060840 | 0.809044 | 2.298229e-50 | -8.615850e-47 |
| Msa0454370 | Msa1092990 | 0.826848 | 2.165252e-54 | -8.615850e-47 |
| Msa0454370 | Msa1100980 | 0.847381 | 1.198984e-59 | -8.615850e-47 |
| Msa0454370 | Msa1109440 | 0.825193 | 5.355867e-54 | -8.615850e-47 |
| Msa0454370 | Msa1121200 | 0.810947 | 8.948257e-51 | -8.615850e-47 |
| Msa0454370 | Msa1135740 | 0.828217 | 1.016553e-54 | -8.615850e-47 |
| Msa0454370 | Msa1146110 | 0.846495 | 2.096053e-59 | -8.615850e-47 |
| Msa0454370 | Msa1150370 | 0.861793 | 7.994074e-64 | -8.615850e-47 |
| Msa0454370 | Msa1173920 | 0.816786 | 4.621408e-52 | -8.615850e-47 |
| Msa0454370 | Msa1187940 | 0.855399 | 6.475661e-62 | -8.615850e-47 |
| Msa0454370 | Msa1192640 | 0.835860 | 1.312450e-56 | -8.615850e-47 |
| Msa0454370 | Msa1246880 | 0.817346 | 3.457929e-52 | -8.615850e-47 |
| Msa0454370 | Msa1248310 | 0.815640 | 8.337206e-52 | -8.615850e-47 |
| Msa0454370 | Msa1269670 | 0.849785 | 2.587262e-60 | -8.615850e-47 |
| Msa0454370 | Msa1270230 | 0.860920 | 1.475171e-63 | -8.615850e-47 |
| Msa0454370 | Msa1270240 | 0.838314 | 3.095997e-57 | -8.615850e-47 |
| Msa0454370 | Msa1270270 | 0.836246 | 1.047207e-56 | -8.615850e-47 |
| Msa0454370 | Msa1283330 | 0.842285 | 2.838077e-58 | -8.615850e-47 |
| Msa0454370 | Msa1285930 | 0.843562 | 1.298437e-58 | -8.615850e-47 |
| Msa0454370 | Msa1287800 | 0.858323 | 8.913811e-63 | -8.615850e-47 |
| Msa0454370 | Msa1287810 | 0.874438 | 6.755229e-68 | -8.615850e-47 |
| Msa0454370 | Msa1287830 | 0.803701 | 3.074788e-49 | -8.615850e-47 |
| Msa0454370 | Msa1289420 | 0.800303 | 1.535185e-48 | -8.615850e-47 |
| Msa0454370 | Msa1289430 | 0.826123 | 3.223620e-54 | -8.615850e-47 |
| Msa0454370 | Msa1297210 | 0.803375 | 3.591681e-49 | -8.615850e-47 |
| Msa0454370 | Msa1307890 | 0.833847 | 4.215468e-56 | -8.615850e-47 |
| Msa0454370 | Msa1320300 | 0.836120 | 1.127426e-56 | -8.615850e-47 |
| Msa0454370 | Msa1340590 | 0.849595 | 2.923485e-60 | -8.615850e-47 |
| Msa0454370 | Msa1342200 | 0.807357 | 5.257746e-50 | -8.615850e-47 |
| Msa0454370 | Msa1397580 | 0.837910 | 3.932760e-57 | -8.615850e-47 |
| Msa0454370 | Msa1404000 | 0.852729 | 3.812797e-61 | -8.615850e-47 |
| Msa0454370 | Msa1415310 | 0.851115 | 1.095116e-60 | -8.615850e-47 |
| Msa0454370 | Msa1422180 | 0.854386 | 1.274389e-61 | -8.615850e-47 |
| Msa0454370 | Msa1433120 | 0.824156 | 9.404847e-54 | -8.615850e-47 |
| Msa0267000 | Msa0454370 | 0.878720 | 2.234136e-69 | -8.615850e-47 |
| Msa0267010 | Msa0454370 | 0.850728 | 1.407089e-60 | -8.615850e-47 |
| Msa0342240 | Msa0454370 | 0.834722 | 2.542727e-56 | -8.615850e-47 |
| Msa0360510 | Msa0454370 | 0.828644 | 8.017981e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454370 | MtrunA17_Chr1g0189271 | 51.163 | 129 | 60 | 2 | 1 | 126 | 102 | 230 | 1.73e-40 | 137 |
| Msa0454370 | MtrunA17_Chr3g0101321 | 54.264 | 129 | 55 | 2 | 1 | 126 | 258 | 385 | 2.51e-39 | 140 |
| Msa0454370 | MtrunA17_Chr1g0189351 | 51.163 | 129 | 60 | 2 | 1 | 126 | 262 | 390 | 3.22e-38 | 137 |
| Msa0454370 | MtrunA17_Chr3g0096971 | 60.000 | 95 | 38 | 0 | 1 | 95 | 1 | 95 | 4.70e-37 | 124 |
| Msa0454370 | MtrunA17_Chr3g0101181 | 52.308 | 130 | 56 | 3 | 1 | 126 | 274 | 401 | 9.85e-37 | 132 |
| Msa0454370 | MtrunA17_Chr3g0100781 | 57.292 | 96 | 41 | 0 | 1 | 96 | 262 | 357 | 8.59e-36 | 126 |
| Msa0454370 | MtrunA17_Chr3g0112511 | 48.462 | 130 | 62 | 2 | 1 | 126 | 256 | 384 | 8.87e-36 | 130 |
| Msa0454370 | MtrunA17_Chr3g0100731 | 46.897 | 145 | 72 | 2 | 1 | 142 | 20 | 162 | 2.13e-35 | 129 |
| Msa0454370 | MtrunA17_Chr3g0100681 | 48.413 | 126 | 62 | 1 | 1 | 123 | 78 | 203 | 8.77e-35 | 126 |
| Msa0454370 | MtrunA17_Chr3g0101211 | 46.512 | 129 | 65 | 2 | 1 | 126 | 56 | 183 | 1.51e-34 | 124 |
| Msa0454370 | MtrunA17_Chr3g0101241 | 48.462 | 130 | 61 | 3 | 1 | 126 | 243 | 370 | 1.91e-34 | 126 |
| Msa0454370 | MtrunA17_Chr3g0101271 | 48.462 | 130 | 61 | 3 | 1 | 126 | 243 | 370 | 1.91e-34 | 126 |
| Msa0454370 | MtrunA17_Chr3g0101331 | 45.736 | 129 | 67 | 1 | 1 | 126 | 267 | 395 | 2.15e-34 | 126 |
| Msa0454370 | MtrunA17_Chr3g0101011 | 65.591 | 93 | 30 | 2 | 1 | 92 | 276 | 367 | 3.18e-34 | 125 |
| Msa0454370 | MtrunA17_Chr3g0101201 | 49.231 | 130 | 60 | 3 | 1 | 126 | 267 | 394 | 4.54e-34 | 125 |
| Msa0454370 | MtrunA17_Chr3g0101231 | 50.000 | 130 | 57 | 4 | 1 | 126 | 275 | 400 | 7.74e-34 | 124 |
| Msa0454370 | MtrunA17_Chr3g0100971 | 48.413 | 126 | 62 | 1 | 1 | 123 | 262 | 387 | 9.40e-34 | 124 |
| Msa0454370 | MtrunA17_Chr3g0100961 | 45.238 | 126 | 66 | 1 | 1 | 123 | 265 | 390 | 7.25e-33 | 121 |
| Msa0454370 | MtrunA17_Chr3g0100801 | 56.989 | 93 | 40 | 0 | 1 | 93 | 230 | 322 | 7.43e-33 | 121 |
| Msa0454370 | MtrunA17_Chr3g0100761 | 46.825 | 126 | 64 | 1 | 1 | 123 | 222 | 347 | 8.46e-33 | 121 |
| Msa0454370 | MtrunA17_Chr1g0151481 | 45.736 | 129 | 67 | 2 | 1 | 126 | 268 | 396 | 4.78e-31 | 116 |
| Msa0454370 | MtrunA17_Chr3g0100851 | 43.448 | 145 | 63 | 3 | 1 | 142 | 155 | 283 | 9.96e-31 | 115 |
| Msa0454370 | MtrunA17_Chr3g0101221 | 48.462 | 130 | 61 | 3 | 1 | 126 | 269 | 396 | 2.01e-28 | 108 |
| Msa0454370 | MtrunA17_Chr3g0100831 | 42.857 | 126 | 64 | 3 | 1 | 123 | 265 | 385 | 3.12e-27 | 105 |
| Msa0454370 | MtrunA17_Chr3g0081391 | 42.636 | 129 | 71 | 1 | 1 | 126 | 266 | 394 | 1.05e-25 | 101 |
| Msa0454370 | MtrunA17_Chr3g0081341 | 43.077 | 130 | 69 | 2 | 1 | 126 | 330 | 458 | 2.60e-25 | 100 |
| Msa0454370 | MtrunA17_Chr3g0080741 | 41.538 | 130 | 70 | 3 | 2 | 127 | 271 | 398 | 1.15e-24 | 98.6 |
| Msa0454370 | MtrunA17_Chr3g0084351 | 43.750 | 128 | 68 | 3 | 2 | 126 | 194 | 320 | 1.01e-23 | 95.5 |
| Msa0454370 | MtrunA17_Chr3g0094301 | 42.308 | 130 | 70 | 2 | 1 | 126 | 267 | 395 | 1.08e-23 | 95.5 |
| Msa0454370 | MtrunA17_Chr7g0229761 | 42.308 | 130 | 70 | 2 | 1 | 126 | 267 | 395 | 1.08e-23 | 95.5 |
| Msa0454370 | MtrunA17_Chr3g0080771 | 37.241 | 145 | 84 | 3 | 2 | 142 | 268 | 409 | 1.48e-23 | 95.1 |
| Msa0454370 | MtrunA17_Chr3g0080791 | 37.931 | 145 | 85 | 2 | 1 | 142 | 267 | 409 | 3.65e-23 | 94.0 |
| Msa0454370 | MtrunA17_Chr5g0444291 | 42.708 | 96 | 35 | 1 | 22 | 97 | 6 | 101 | 3.70e-23 | 87.0 |
| Msa0454370 | MtrunA17_Chr3g0081361 | 38.889 | 126 | 76 | 1 | 1 | 126 | 275 | 399 | 9.75e-23 | 92.8 |
| Msa0454370 | MtrunA17_Chr3g0080631 | 48.421 | 95 | 49 | 0 | 1 | 95 | 267 | 361 | 1.29e-22 | 92.4 |
| Msa0454370 | MtrunA17_Chr3g0080721 | 38.462 | 130 | 75 | 2 | 1 | 126 | 5 | 133 | 2.03e-22 | 92.0 |
| Msa0454370 | MtrunA17_Chr3g0080751 | 41.085 | 129 | 73 | 1 | 1 | 126 | 267 | 395 | 6.86e-22 | 90.5 |
| Msa0454370 | MtrunA17_Chr3g0080601 | 36.301 | 146 | 86 | 3 | 1 | 142 | 266 | 408 | 1.03e-21 | 90.1 |
| Msa0454370 | MtrunA17_Chr3g0081841 | 48.889 | 90 | 46 | 0 | 1 | 90 | 102 | 191 | 1.14e-21 | 89.7 |
| Msa0454370 | MtrunA17_Chr3g0081211 | 39.231 | 130 | 74 | 2 | 1 | 126 | 265 | 393 | 2.17e-21 | 89.0 |
| Msa0454370 | MtrunA17_Chr3g0080731 | 37.984 | 129 | 77 | 1 | 1 | 126 | 267 | 395 | 4.80e-21 | 88.2 |
| Msa0454370 | MtrunA17_Chr3g0081191 | 37.302 | 126 | 78 | 1 | 1 | 126 | 266 | 390 | 9.45e-21 | 87.0 |
| Msa0454370 | MtrunA17_Chr3g0081371 | 38.889 | 126 | 76 | 1 | 1 | 126 | 275 | 399 | 2.05e-20 | 86.3 |
| Msa0454370 | MtrunA17_Chr3g0081181 | 35.200 | 125 | 80 | 1 | 6 | 130 | 260 | 383 | 7.07e-17 | 76.3 |
| Msa0454370 | MtrunA17_Chr5g0410031 | 33.333 | 117 | 78 | 0 | 10 | 126 | 263 | 379 | 1.08e-16 | 75.5 |
| Msa0454370 | MtrunA17_Chr5g0410001 | 30.769 | 117 | 81 | 0 | 10 | 126 | 262 | 378 | 3.17e-16 | 74.3 |
| Msa0454370 | MtrunA17_Chr3g0101391 | 45.333 | 75 | 38 | 2 | 55 | 126 | 1 | 75 | 1.95e-11 | 60.5 |
| Msa0454370 | MtrunA17_Chr5g0404741 | 28.226 | 124 | 86 | 2 | 1 | 123 | 255 | 376 | 2.39e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454370 | AT3G07040.1 | 32.800 | 125 | 78 | 3 | 6 | 126 | 268 | 390 | 5.17e-14 | 68.2 |
| Msa0454370 | AT3G46530.1 | 34.746 | 118 | 64 | 3 | 12 | 123 | 265 | 375 | 9.64e-13 | 64.7 |
Find 22 sgRNAs with CRISPR-Local
Find 46 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCCCTTGTAGTCAAAT+TGG | 0.233969 | 3_3:+45715278 | None:intergenic |
| TTGTCTTCTTTGATGAAGTA+TGG | 0.272658 | 3_3:-45715486 | Msa0454370:CDS |
| TTTATCTCTTGAGGAGTCTA+TGG | 0.301690 | 3_3:-45715323 | Msa0454370:CDS |
| GAACTCTCTTGATTGTGTTC+AGG | 0.366315 | 3_3:+45714913 | None:intergenic |
| ATAGACTCCTCAAGAGATAA+AGG | 0.389771 | 3_3:+45715325 | None:intergenic |
| CTGAGCAACATCCATGTTCC+TGG | 0.403982 | 3_3:+45715390 | None:intergenic |
| TCTTTGATGAAGTATGGAAT+AGG | 0.436186 | 3_3:-45715480 | Msa0454370:CDS |
| TGATGAAGTGAGAAATTACT+TGG | 0.438820 | 3_3:-45715524 | Msa0454370:CDS |
| GATTACAAAGAAAATGTTTG+AGG | 0.451115 | 3_3:-45714849 | None:intergenic |
| TTGACAATAGAAAAGGAAGT+AGG | 0.474251 | 3_3:-45715426 | Msa0454370:CDS |
| CAGGAACATGGATGTTGCTC+AGG | 0.479715 | 3_3:-45715389 | Msa0454370:CDS |
| GGCATTCCAATTTGACTACA+AGG | 0.483204 | 3_3:-45715284 | Msa0454370:CDS |
| TGACAATAGAAAAGGAAGTA+GGG | 0.504473 | 3_3:-45715425 | Msa0454370:CDS |
| GACTACAAGGGAAATTATGA+AGG | 0.507454 | 3_3:-45715271 | Msa0454370:intron |
| AATTCAACCTTTATCTCTTG+AGG | 0.511707 | 3_3:-45715332 | Msa0454370:CDS |
| TATGGAGTTGTTCCGTATGA+AGG | 0.511984 | 3_3:-45715305 | Msa0454370:CDS |
| GAAATTACTTGGAGCAAAAG+AGG | 0.524385 | 3_3:-45715513 | Msa0454370:CDS |
| TTGATTGTGTTCAGGAGCAT+AGG | 0.527511 | 3_3:+45714921 | None:intergenic |
| CAAATTGGAATGCCTTCATA+CGG | 0.573239 | 3_3:+45715293 | None:intergenic |
| ATTTATCACTACCAGGAACA+TGG | 0.589487 | 3_3:-45715401 | Msa0454370:CDS |
| GCATTCCAATTTGACTACAA+GGG | 0.629602 | 3_3:-45715283 | Msa0454370:CDS |
| GTAGGGTATTTATCACTACC+AGG | 0.644742 | 3_3:-45715408 | Msa0454370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATGGAATAGGAATTTT+TGG | - | chr3_3:45714924-45714943 | Msa0454370:CDS | 25.0% |
| !!! | GTTTTGATTGACAATAGAAA+AGG | - | chr3_3:45714962-45714981 | Msa0454370:CDS | 25.0% |
| TGATGAAGTGAGAAATTACT+TGG | - | chr3_3:45714871-45714890 | Msa0454370:CDS | 30.0% | |
| TTGTCTTCTTTGATGAAGTA+TGG | - | chr3_3:45714909-45714928 | Msa0454370:CDS | 30.0% | |
| TCTTTGATGAAGTATGGAAT+AGG | - | chr3_3:45714915-45714934 | Msa0454370:CDS | 30.0% | |
| TTGACAATAGAAAAGGAAGT+AGG | - | chr3_3:45714969-45714988 | Msa0454370:intron | 30.0% | |
| TGACAATAGAAAAGGAAGTA+GGG | - | chr3_3:45714970-45714989 | Msa0454370:intron | 30.0% | |
| AATTCAACCTTTATCTCTTG+AGG | - | chr3_3:45715063-45715082 | Msa0454370:intron | 30.0% | |
| AATTTCCCTTGTAGTCAAAT+TGG | + | chr3_3:45715120-45715139 | None:intergenic | 30.0% | |
| ATGAAGGTGAGAAAAACATA+AGG | - | chr3_3:45715140-45715159 | Msa0454370:intron | 30.0% | |
| TGAAGGTGAGAAAAACATAA+GGG | - | chr3_3:45715141-45715160 | Msa0454370:intron | 30.0% | |
| !!! | CTCTCTCTATCTGTTTTTAT+CGG | + | chr3_3:45715278-45715297 | None:intergenic | 30.0% |
| AAGACACAAAGCAATTATAC+AGG | - | chr3_3:45715310-45715329 | Msa0454370:CDS | 30.0% | |
| GAAATTACTTGGAGCAAAAG+AGG | - | chr3_3:45714882-45714901 | Msa0454370:CDS | 35.0% | |
| ATTTATCACTACCAGGAACA+TGG | - | chr3_3:45714994-45715013 | Msa0454370:intron | 35.0% | |
| ATAGACTCCTCAAGAGATAA+AGG | + | chr3_3:45715073-45715092 | None:intergenic | 35.0% | |
| TTTATCTCTTGAGGAGTCTA+TGG | - | chr3_3:45715072-45715091 | Msa0454370:intron | 35.0% | |
| CAAATTGGAATGCCTTCATA+CGG | + | chr3_3:45715105-45715124 | None:intergenic | 35.0% | |
| GCATTCCAATTTGACTACAA+GGG | - | chr3_3:45715112-45715131 | Msa0454370:intron | 35.0% | |
| GACTACAAGGGAAATTATGA+AGG | - | chr3_3:45715124-45715143 | Msa0454370:intron | 35.0% | |
| GAAGGTGAGAAAAACATAAG+GGG | - | chr3_3:45715142-45715161 | Msa0454370:intron | 35.0% | |
| !!! | TTGCTTTTGAAGTGATGTTC+AGG | - | chr3_3:45715240-45715259 | Msa0454370:intron | 35.0% |
| !! | ACATTTTAGTGAACTCTCCT+TGG | + | chr3_3:45715378-45715397 | None:intergenic | 35.0% |
| ! | GTAGGGTATTTATCACTACC+AGG | - | chr3_3:45714987-45715006 | Msa0454370:intron | 40.0% |
| TATGGAGTTGTTCCGTATGA+AGG | - | chr3_3:45715090-45715109 | Msa0454370:intron | 40.0% | |
| GGCATTCCAATTTGACTACA+AGG | - | chr3_3:45715111-45715130 | Msa0454370:intron | 40.0% | |
| TTCTCCTAAGCTGAAAACAG+TGG | - | chr3_3:45715199-45715218 | Msa0454370:intron | 40.0% | |
| ! | ACAAGAATACTTCCGGTTTG+TGG | + | chr3_3:45715342-45715361 | None:intergenic | 40.0% |
| ! | TTGATTGTGTTCAGGAGCAT+AGG | + | chr3_3:45715477-45715496 | None:intergenic | 40.0% |
| GAACTCTCTTGATTGTGTTC+AGG | + | chr3_3:45715485-45715504 | None:intergenic | 40.0% | |
| GGTGAGAAAAACATAAGGGG+CGG | - | chr3_3:45715145-45715164 | Msa0454370:intron | 45.0% | |
| GTGAGAAAAACATAAGGGGC+GGG | - | chr3_3:45715146-45715165 | Msa0454370:intron | 45.0% | |
| TGAGAAAAACATAAGGGGCG+GGG | - | chr3_3:45715147-45715166 | Msa0454370:intron | 45.0% | |
| ! | CTGACCACTGTTTTCAGCTT+AGG | + | chr3_3:45715206-45715225 | None:intergenic | 45.0% |
| TACAGGTTCCTTCCACAAAC+CGG | - | chr3_3:45715327-45715346 | Msa0454370:CDS | 45.0% | |
| ! | GAATACTTCCGGTTTGTGGA+AGG | + | chr3_3:45715338-45715357 | None:intergenic | 45.0% |
| AAGGGGGACAAGAATACTTC+CGG | + | chr3_3:45715349-45715368 | None:intergenic | 45.0% | |
| ! | AACTCTCCTTGGAAGTGCAA+GGG | + | chr3_3:45715367-45715386 | None:intergenic | 45.0% |
| CTGAGCAACATCCATGTTCC+TGG | + | chr3_3:45715008-45715027 | None:intergenic | 50.0% | |
| CAGGAACATGGATGTTGCTC+AGG | - | chr3_3:45715006-45715025 | Msa0454370:intron | 50.0% | |
| GAGAAAAACATAAGGGGCGG+GGG | - | chr3_3:45715148-45715167 | Msa0454370:intron | 50.0% | |
| AGAAAAACATAAGGGGCGGG+GGG | - | chr3_3:45715149-45715168 | Msa0454370:intron | 50.0% | |
| ! | ACTCTCCTTGGAAGTGCAAG+GGG | + | chr3_3:45715366-45715385 | None:intergenic | 50.0% |
| ! | GAACTCTCCTTGGAAGTGCA+AGG | + | chr3_3:45715368-45715387 | None:intergenic | 50.0% |
| TTGTCCCCCTTGCACTTCCA+AGG | - | chr3_3:45715358-45715377 | Msa0454370:CDS | 55.0% | |
| ! | CTCTCCTTGGAAGTGCAAGG+GGG | + | chr3_3:45715365-45715384 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 45714851 | 45715566 | 45714851 | ID=Msa0454370;Name=Msa0454370 |
| chr3_3 | mRNA | 45714851 | 45715566 | 45714851 | ID=Msa0454370-mRNA-1;Parent=Msa0454370;Name=Msa0454370-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.5|1|1|2|0|142 |
| chr3_3 | exon | 45715272 | 45715566 | 45715272 | ID=Msa0454370-mRNA-1:exon:8495;Parent=Msa0454370-mRNA-1 |
| chr3_3 | exon | 45714851 | 45714984 | 45714851 | ID=Msa0454370-mRNA-1:exon:8494;Parent=Msa0454370-mRNA-1 |
| chr3_3 | CDS | 45715272 | 45715566 | 45715272 | ID=Msa0454370-mRNA-1:cds;Parent=Msa0454370-mRNA-1 |
| chr3_3 | CDS | 45714851 | 45714984 | 45714851 | ID=Msa0454370-mRNA-1:cds;Parent=Msa0454370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
