Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012700 | Msa0438620 | 0.806177 | 9.334986e-50 | -8.615850e-47 |
| Msa0013750 | Msa0438620 | 0.810735 | 9.943539e-51 | -8.615850e-47 |
| Msa0015750 | Msa0438620 | 0.845466 | 3.990173e-59 | -8.615850e-47 |
| Msa0016570 | Msa0438620 | 0.843957 | 1.018091e-58 | -8.615850e-47 |
| Msa0016580 | Msa0438620 | 0.832949 | 7.059948e-56 | -8.615850e-47 |
| Msa0092630 | Msa0438620 | 0.802348 | 5.853697e-49 | -8.615850e-47 |
| Msa0102070 | Msa0438620 | 0.861603 | 9.134143e-64 | -8.615850e-47 |
| Msa0110270 | Msa0438620 | 0.822146 | 2.768179e-53 | -8.615850e-47 |
| Msa0111510 | Msa0438620 | 0.800953 | 1.131671e-48 | -8.615850e-47 |
| Msa0124100 | Msa0438620 | 0.815381 | 9.518974e-52 | -8.615850e-47 |
| Msa0142220 | Msa0438620 | 0.831894 | 1.288716e-55 | -8.615850e-47 |
| Msa0145750 | Msa0438620 | 0.829586 | 4.739263e-55 | -8.615850e-47 |
| Msa0153910 | Msa0438620 | 0.807632 | 4.598421e-50 | -8.615850e-47 |
| Msa0200000 | Msa0438620 | 0.843999 | 9.915701e-59 | -8.615850e-47 |
| Msa0227480 | Msa0438620 | 0.866560 | 2.608338e-65 | -8.615850e-47 |
| Msa0231000 | Msa0438620 | 0.806767 | 7.011836e-50 | -8.615850e-47 |
| Msa0232850 | Msa0438620 | 0.827636 | 1.402390e-54 | -8.615850e-47 |
| Msa0235140 | Msa0438620 | 0.804794 | 1.820274e-49 | -8.615850e-47 |
| Msa0365500 | Msa0438620 | 0.858405 | 8.424284e-63 | -8.615850e-47 |
| Msa0384800 | Msa0438620 | 0.861937 | 7.221377e-64 | -8.615850e-47 |
| Msa0384890 | Msa0438620 | 0.821982 | 3.021446e-53 | -8.615850e-47 |
| Msa0406120 | Msa0438620 | 0.828544 | 8.477139e-55 | -8.615850e-47 |
| Msa0407750 | Msa0438620 | 0.821273 | 4.407304e-53 | -8.615850e-47 |
| Msa0414410 | Msa0438620 | 0.855916 | 4.576029e-62 | -8.615850e-47 |
| Msa0414420 | Msa0438620 | 0.896704 | 2.855748e-76 | -8.615850e-47 |
| Msa0436780 | Msa0438620 | 0.800929 | 1.144252e-48 | -8.615850e-47 |
| Msa0436800 | Msa0438620 | 0.819576 | 1.080294e-52 | -8.615850e-47 |
| Msa0438620 | Msa0450000 | 0.848939 | 4.452506e-60 | -8.615850e-47 |
| Msa0438620 | Msa0450570 | 0.822174 | 2.727271e-53 | -8.615850e-47 |
| Msa0438620 | Msa0451730 | 0.804409 | 2.190476e-49 | -8.615850e-47 |
| Msa0438620 | Msa0452900 | 0.900439 | 7.319862e-78 | -8.615850e-47 |
| Msa0438620 | Msa0453120 | 0.833030 | 6.738916e-56 | -8.615850e-47 |
| Msa0438620 | Msa0454370 | 0.820063 | 8.361644e-53 | -8.615850e-47 |
| Msa0438620 | Msa0454910 | 0.810430 | 1.156991e-50 | -8.615850e-47 |
| Msa0438620 | Msa0459160 | 0.834451 | 2.974273e-56 | -8.615850e-47 |
| Msa0438620 | Msa0459170 | 0.832285 | 1.031628e-55 | -8.615850e-47 |
| Msa0438620 | Msa0485030 | 0.804027 | 2.630974e-49 | -8.615850e-47 |
| Msa0438620 | Msa0491590 | 0.867087 | 1.772320e-65 | -8.615850e-47 |
| Msa0438620 | Msa0502760 | 0.840909 | 6.544426e-58 | -8.615850e-47 |
| Msa0438620 | Msa0506270 | 0.811388 | 7.179120e-51 | -8.615850e-47 |
| Msa0438620 | Msa0534540 | 0.842151 | 3.081118e-58 | -8.615850e-47 |
| Msa0438620 | Msa0564890 | 0.863311 | 2.724473e-64 | -8.615850e-47 |
| Msa0438620 | Msa0596150 | 0.821389 | 4.144812e-53 | -8.615850e-47 |
| Msa0438620 | Msa0604350 | 0.809264 | 2.061620e-50 | -8.615850e-47 |
| Msa0438620 | Msa0636170 | 0.823705 | 1.199639e-53 | -8.615850e-47 |
| Msa0438620 | Msa0639610 | 0.827582 | 1.444738e-54 | -8.615850e-47 |
| Msa0438620 | Msa0678930 | 0.850315 | 1.838544e-60 | -8.615850e-47 |
| Msa0438620 | Msa0694370 | 0.803839 | 2.878845e-49 | -8.615850e-47 |
| Msa0438620 | Msa0725850 | 0.805098 | 1.572519e-49 | -8.615850e-47 |
| Msa0438620 | Msa0726140 | 0.874035 | 9.248489e-68 | -8.615850e-47 |
| Msa0438620 | Msa0729800 | 0.869836 | 2.297452e-66 | -8.615850e-47 |
| Msa0438620 | Msa0732310 | 0.810421 | 1.162194e-50 | -8.615850e-47 |
| Msa0438620 | Msa0733290 | 0.849053 | 4.137591e-60 | -8.615850e-47 |
| Msa0438620 | Msa0743810 | 0.883060 | 6.172151e-71 | -8.615850e-47 |
| Msa0438620 | Msa0745060 | 0.882379 | 1.094415e-70 | -8.615850e-47 |
| Msa0438620 | Msa0764960 | 0.812919 | 3.327647e-51 | -8.615850e-47 |
| Msa0438620 | Msa0767720 | 0.885966 | 5.153308e-72 | -8.615850e-47 |
| Msa0438620 | Msa0777870 | 0.837942 | 3.859683e-57 | -8.615850e-47 |
| Msa0438620 | Msa0783160 | 0.854600 | 1.104723e-61 | -8.615850e-47 |
| Msa0438620 | Msa0787600 | 0.853062 | 3.062134e-61 | -8.615850e-47 |
| Msa0438620 | Msa0789250 | 0.820434 | 6.873428e-53 | -8.615850e-47 |
| Msa0438620 | Msa0808010 | 0.870501 | 1.391140e-66 | -8.615850e-47 |
| Msa0438620 | Msa0808020 | 0.864268 | 1.373916e-64 | -8.615850e-47 |
| Msa0438620 | Msa0811080 | 0.828283 | 9.798885e-55 | -8.615850e-47 |
| Msa0438620 | Msa0811270 | 0.801693 | 7.984385e-49 | -8.615850e-47 |
| Msa0438620 | Msa0825860 | 0.882522 | 9.707756e-71 | -8.615850e-47 |
| Msa0438620 | Msa0845930 | 0.805953 | 1.040795e-49 | -8.615850e-47 |
| Msa0438620 | Msa0846210 | 0.815203 | 1.042695e-51 | -8.615850e-47 |
| Msa0438620 | Msa0846330 | 0.854931 | 8.857433e-62 | -8.615850e-47 |
| Msa0438620 | Msa0846350 | 0.858363 | 8.670207e-63 | -8.615850e-47 |
| Msa0438620 | Msa0848960 | 0.823772 | 1.157090e-53 | -8.615850e-47 |
| Msa0438620 | Msa0858980 | 0.841134 | 5.712711e-58 | -8.615850e-47 |
| Msa0438620 | Msa0865320 | 0.863054 | 3.272280e-64 | -8.615850e-47 |
| Msa0438620 | Msa0872230 | 0.812462 | 4.188164e-51 | -8.615850e-47 |
| Msa0438620 | Msa0885290 | 0.832348 | 9.953015e-56 | -8.615850e-47 |
| Msa0438620 | Msa0888370 | 0.848589 | 5.566793e-60 | -8.615850e-47 |
| Msa0438620 | Msa0888420 | 0.802123 | 6.513234e-49 | -8.615850e-47 |
| Msa0438620 | Msa0896080 | 0.827829 | 1.260348e-54 | -8.615850e-47 |
| Msa0438620 | Msa0907260 | 0.828195 | 1.028722e-54 | -8.615850e-47 |
| Msa0438620 | Msa0952720 | 0.810193 | 1.302011e-50 | -8.615850e-47 |
| Msa0438620 | Msa0956270 | 0.831527 | 1.586763e-55 | -8.615850e-47 |
| Msa0438620 | Msa0957680 | 0.801838 | 7.452788e-49 | -8.615850e-47 |
| Msa0438620 | Msa0981270 | 0.806010 | 1.012167e-49 | -8.615850e-47 |
| Msa0438620 | Msa0981370 | 0.846496 | 2.094807e-59 | -8.615850e-47 |
| Msa0438620 | Msa0989060 | 0.834006 | 3.846352e-56 | -8.615850e-47 |
| Msa0438620 | Msa1016280 | 0.907566 | 4.413132e-81 | -8.615850e-47 |
| Msa0438620 | Msa1023050 | 0.816537 | 5.255410e-52 | -8.615850e-47 |
| Msa0438620 | Msa1024240 | 0.808594 | 2.868270e-50 | -8.615850e-47 |
| Msa0438620 | Msa1025360 | 0.882902 | 7.053541e-71 | -8.615850e-47 |
| Msa0438620 | Msa1025370 | 0.869418 | 3.142477e-66 | -8.615850e-47 |
| Msa0438620 | Msa1044830 | 0.871708 | 5.561399e-67 | -8.615850e-47 |
| Msa0438620 | Msa1044840 | 0.884597 | 1.674389e-71 | -8.615850e-47 |
| Msa0438620 | Msa1060840 | 0.816832 | 4.511540e-52 | -8.615850e-47 |
| Msa0438620 | Msa1077460 | 0.802566 | 5.280007e-49 | -8.615850e-47 |
| Msa0438620 | Msa1092990 | 0.871059 | 9.116119e-67 | -8.615850e-47 |
| Msa0438620 | Msa1100980 | 0.878906 | 1.921181e-69 | -8.615850e-47 |
| Msa0438620 | Msa1109440 | 0.869682 | 2.577696e-66 | -8.615850e-47 |
| Msa0438620 | Msa1121200 | 0.864648 | 1.045422e-64 | -8.615850e-47 |
| Msa0438620 | Msa1135740 | 0.859890 | 3.024589e-63 | -8.615850e-47 |
| Msa0438620 | Msa1146110 | 0.866412 | 2.906555e-65 | -8.615850e-47 |
| Msa0438620 | Msa1149360 | 0.816967 | 4.208728e-52 | -8.615850e-47 |
| Msa0438620 | Msa1150370 | 0.828929 | 6.841829e-55 | -8.615850e-47 |
| Msa0438620 | Msa1173920 | 0.836956 | 6.904874e-57 | -8.615850e-47 |
| Msa0438620 | Msa1187940 | 0.909540 | 5.086133e-82 | -8.615850e-47 |
| Msa0438620 | Msa1187950 | 0.825064 | 5.747541e-54 | -8.615850e-47 |
| Msa0438620 | Msa1192640 | 0.897110 | 1.930703e-76 | -8.615850e-47 |
| Msa0438620 | Msa1246880 | 0.808770 | 2.630496e-50 | -8.615850e-47 |
| Msa0438620 | Msa1260100 | 0.834797 | 2.434745e-56 | -8.615850e-47 |
| Msa0438620 | Msa1269670 | 0.881578 | 2.135760e-70 | -8.615850e-47 |
| Msa0438620 | Msa1270230 | 0.889108 | 3.252898e-73 | -8.615850e-47 |
| Msa0438620 | Msa1270240 | 0.881166 | 3.008956e-70 | -8.615850e-47 |
| Msa0438620 | Msa1270270 | 0.870424 | 1.475160e-66 | -8.615850e-47 |
| Msa0438620 | Msa1283330 | 0.871485 | 6.596109e-67 | -8.615850e-47 |
| Msa0438620 | Msa1285930 | 0.898989 | 3.088451e-77 | -8.615850e-47 |
| Msa0438620 | Msa1287800 | 0.895173 | 1.232758e-75 | -8.615850e-47 |
| Msa0438620 | Msa1287810 | 0.902242 | 1.183619e-78 | -8.615850e-47 |
| Msa0438620 | Msa1287820 | 0.803478 | 3.420846e-49 | -8.615850e-47 |
| Msa0438620 | Msa1287830 | 0.824851 | 6.451095e-54 | -8.615850e-47 |
| Msa0438620 | Msa1289420 | 0.801045 | 1.083830e-48 | -8.615850e-47 |
| Msa0438620 | Msa1289430 | 0.839537 | 1.493460e-57 | -8.615850e-47 |
| Msa0438620 | Msa1297210 | 0.804931 | 1.704644e-49 | -8.615850e-47 |
| Msa0438620 | Msa1305480 | 0.806532 | 7.857869e-50 | -8.615850e-47 |
| Msa0438620 | Msa1307890 | 0.858550 | 7.629338e-63 | -8.615850e-47 |
| Msa0438620 | Msa1310120 | 0.806440 | 8.215888e-50 | -8.615850e-47 |
| Msa0438620 | Msa1320300 | 0.845127 | 4.928979e-59 | -8.615850e-47 |
| Msa0438620 | Msa1340590 | 0.859221 | 4.805212e-63 | -8.615850e-47 |
| Msa0438620 | Msa1342200 | 0.821530 | 3.845503e-53 | -8.615850e-47 |
| Msa0438620 | Msa1369430 | 0.808847 | 2.532196e-50 | -8.615850e-47 |
| Msa0438620 | Msa1382690 | 0.809658 | 1.697367e-50 | -8.615850e-47 |
| Msa0438620 | Msa1397150 | 0.802429 | 5.635190e-49 | -8.615850e-47 |
| Msa0438620 | Msa1397580 | 0.856748 | 2.607728e-62 | -8.615850e-47 |
| Msa0438620 | Msa1404000 | 0.876780 | 1.063504e-68 | -8.615850e-47 |
| Msa0438620 | Msa1408780 | 0.828236 | 1.005868e-54 | -8.615850e-47 |
| Msa0438620 | Msa1415310 | 0.860024 | 2.755360e-63 | -8.615850e-47 |
| Msa0438620 | Msa1422180 | 0.854631 | 1.082365e-61 | -8.615850e-47 |
| Msa0438620 | Msa1433120 | 0.856864 | 2.411523e-62 | -8.615850e-47 |
| Msa0267000 | Msa0438620 | 0.866046 | 3.795758e-65 | -8.615850e-47 |
| Msa0267010 | Msa0438620 | 0.883304 | 5.025498e-71 | -8.615850e-47 |
| Msa0270520 | Msa0438620 | 0.824576 | 7.488268e-54 | -8.615850e-47 |
| Msa0304170 | Msa0438620 | 0.828715 | 7.707941e-55 | -8.615850e-47 |
| Msa0306460 | Msa0438620 | 0.841370 | 4.953151e-58 | -8.615850e-47 |
| Msa0313760 | Msa0438620 | 0.805815 | 1.112347e-49 | -8.615850e-47 |
| Msa0342240 | Msa0438620 | 0.872338 | 3.433777e-67 | -8.615850e-47 |
| Msa0360510 | Msa0438620 | 0.864061 | 1.594027e-64 | -8.615850e-47 |
| Msa0363300 | Msa0438620 | 0.819291 | 1.254808e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAAACATGTGCATTAAA+TGG | 0.169612 | 3_3:-3224067 | None:intergenic |
| GCAGCAGCTTCTTTCTCATA+AGG | 0.379156 | 3_3:-3223968 | None:intergenic |
| AATGACAAAGTCCTTGTCTA+AGG | 0.403067 | 3_3:+3223868 | None:intergenic |
| TTAGACAAGGACTTTGTCAT+TGG | 0.413757 | 3_3:-3223866 | None:intergenic |
| AATAAACATGTGCATTAAAT+GGG | 0.435388 | 3_3:-3224066 | None:intergenic |
| CACTGAGACAGTAGCAATGG+CGG | 0.575656 | 3_3:-3224038 | None:intergenic |
| GGCTGCAGATCGAAAACAGA+AGG | 0.608068 | 3_3:+3223919 | Msa0438620:CDS |
| AGAAGGCTAGTGTCTTCTCA+AGG | 0.609115 | 3_3:+3223936 | Msa0438620:CDS |
| AGCTACGACGACAGAACCAA+CGG | 0.611715 | 3_3:+3223898 | Msa0438620:CDS |
| AGCTTGTGCTGCCTTAGACA+AGG | 0.616743 | 3_3:-3223879 | None:intergenic |
| GTTGAGTGGTACTTCATCAG+TGG | 0.619831 | 3_3:+3224003 | Msa0438620:CDS |
| TTTCACTGAGACAGTAGCAA+TGG | 0.621278 | 3_3:-3224041 | None:intergenic |
| TGAGACAGTAGCAATGGCGG+CGG | 0.645104 | 3_3:-3224035 | None:intergenic |
| CAGAATACACATCACCTTGG+GGG | 0.695890 | 3_3:-3225669 | None:intergenic |
| GCTAAAATGAGAAAGTTGAG+TGG | 0.715530 | 3_3:+3223989 | Msa0438620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAAAAAAAATAATA+AGG | + | chr3_3:3224414-3224433 | Msa0438620:intron | 0.0% |
| !! | TAAAATTAAAAAAAATAATA+AGG | + | chr3_3:3224414-3224433 | Msa0438620:intron | 0.0% |
| !! | AAAAAAAATAATAAGGTTTA+TGG | + | chr3_3:3224421-3224440 | Msa0438620:intron | 10.0% |
| !!! | ATTTAATAATATAGAAGTAT+TGG | + | chr3_3:3224943-3224962 | Msa0438620:intron | 10.0% |
| !! | AAAAAAAATAATAAGGTTTA+TGG | + | chr3_3:3224421-3224440 | Msa0438620:intron | 10.0% |
| !!! | ATTTAATAATATAGAAGTAT+TGG | + | chr3_3:3224943-3224962 | Msa0438620:intron | 10.0% |
| !!! | TATCATTTTTTTTAATCCAA+CGG | - | chr3_3:3224112-3224131 | None:intergenic | 15.0% |
| !!! | AATAATTTCAAGTTTTCATT+TGG | - | chr3_3:3224568-3224587 | None:intergenic | 15.0% |
| !! | AATAAAATTATTGACATCTA+TGG | - | chr3_3:3224899-3224918 | None:intergenic | 15.0% |
| !!! | TCAATAATTTTATTAGAACT+TGG | + | chr3_3:3224905-3224924 | Msa0438620:intron | 15.0% |
| !!! | CTAATAACTTTTAAGAATAA+GGG | - | chr3_3:3225055-3225074 | None:intergenic | 15.0% |
| !!! | TTTTTCACTTATTTTTGTAA+AGG | - | chr3_3:3225196-3225215 | None:intergenic | 15.0% |
| !!! | TATCATTTTTTTTAATCCAA+CGG | - | chr3_3:3224112-3224131 | None:intergenic | 15.0% |
| !!! | AATAATTTCAAGTTTTCATT+TGG | - | chr3_3:3224568-3224587 | None:intergenic | 15.0% |
| !! | AATAAAATTATTGACATCTA+TGG | - | chr3_3:3224899-3224918 | None:intergenic | 15.0% |
| !!! | TCAATAATTTTATTAGAACT+TGG | + | chr3_3:3224905-3224924 | Msa0438620:intron | 15.0% |
| !!! | CTAATAACTTTTAAGAATAA+GGG | - | chr3_3:3225055-3225074 | None:intergenic | 15.0% |
| !!! | TTTTTCACTTATTTTTGTAA+AGG | - | chr3_3:3225196-3225215 | None:intergenic | 15.0% |
| !! | AATAAACATGTGCATTAAAT+GGG | - | chr3_3:3224069-3224088 | None:intergenic | 20.0% |
| !! | AAATAAACATGTGCATTAAA+TGG | - | chr3_3:3224070-3224089 | None:intergenic | 20.0% |
| !! | TGGATTAAAAAAAATGATAC+CGG | + | chr3_3:3224113-3224132 | Msa0438620:intron | 20.0% |
| !! | TAAAGGCAAAATTAATTATG+TGG | + | chr3_3:3224319-3224338 | Msa0438620:intron | 20.0% |
| !! | AAAAATAATAAGGTTTATGG+TGG | + | chr3_3:3224424-3224443 | Msa0438620:intron | 20.0% |
| !! | GAAAACTTGAAATTATTTAG+AGG | + | chr3_3:3224571-3224590 | Msa0438620:intron | 20.0% |
| !!! | TACCATATTTTGTGATAAAT+AGG | + | chr3_3:3224772-3224791 | Msa0438620:intron | 20.0% |
| !!! | ACCATATTTTGTGATAAATA+GGG | + | chr3_3:3224773-3224792 | Msa0438620:intron | 20.0% |
| !! | TTAAAGATTCGTTATTAACA+GGG | - | chr3_3:3224807-3224826 | None:intergenic | 20.0% |
| !! | ATTAAAGATTCGTTATTAAC+AGG | - | chr3_3:3224808-3224827 | None:intergenic | 20.0% |
| !! | TTATCTATTCATGATTATGT+TGG | + | chr3_3:3224867-3224886 | Msa0438620:intron | 20.0% |
| !!! | TGCATTTTTTTCAAAATTCA+AGG | + | chr3_3:3224966-3224985 | Msa0438620:intron | 20.0% |
| !!! | ATTTTTTTCAAAATTCAAGG+TGG | + | chr3_3:3224969-3224988 | Msa0438620:intron | 20.0% |
| !!! | CCTAATAACTTTTAAGAATA+AGG | - | chr3_3:3225056-3225075 | None:intergenic | 20.0% |
| !! | CCTTATTCTTAAAAGTTATT+AGG | + | chr3_3:3225053-3225072 | Msa0438620:intron | 20.0% |
| !! | AAATTAGAGCCAAAAATTTA+GGG | - | chr3_3:3225094-3225113 | None:intergenic | 20.0% |
| !! | AAAAATAAGTGAAAAATCGA+TGG | + | chr3_3:3225200-3225219 | Msa0438620:intron | 20.0% |
| !! | GTTTCTATGAAAATCAAATA+GGG | - | chr3_3:3225467-3225486 | None:intergenic | 20.0% |
| !! | AAAACAAAAATAAAAGATGC+TGG | - | chr3_3:3225530-3225549 | None:intergenic | 20.0% |
| !! | AACTCAAATTCAAACTAAAA+AGG | - | chr3_3:3225701-3225720 | None:intergenic | 20.0% |
| !! | AATAAACATGTGCATTAAAT+GGG | - | chr3_3:3224069-3224088 | None:intergenic | 20.0% |
| !! | AAATAAACATGTGCATTAAA+TGG | - | chr3_3:3224070-3224089 | None:intergenic | 20.0% |
| !! | TGGATTAAAAAAAATGATAC+CGG | + | chr3_3:3224113-3224132 | Msa0438620:intron | 20.0% |
| !! | TAAAGGCAAAATTAATTATG+TGG | + | chr3_3:3224319-3224338 | Msa0438620:intron | 20.0% |
| !! | AAAAATAATAAGGTTTATGG+TGG | + | chr3_3:3224424-3224443 | Msa0438620:intron | 20.0% |
| !! | GAAAACTTGAAATTATTTAG+AGG | + | chr3_3:3224571-3224590 | Msa0438620:intron | 20.0% |
| !!! | TACCATATTTTGTGATAAAT+AGG | + | chr3_3:3224772-3224791 | Msa0438620:intron | 20.0% |
| !!! | ACCATATTTTGTGATAAATA+GGG | + | chr3_3:3224773-3224792 | Msa0438620:intron | 20.0% |
| !! | TTAAAGATTCGTTATTAACA+GGG | - | chr3_3:3224807-3224826 | None:intergenic | 20.0% |
| !! | ATTAAAGATTCGTTATTAAC+AGG | - | chr3_3:3224808-3224827 | None:intergenic | 20.0% |
| !! | TTATCTATTCATGATTATGT+TGG | + | chr3_3:3224867-3224886 | Msa0438620:intron | 20.0% |
| !!! | TGCATTTTTTTCAAAATTCA+AGG | + | chr3_3:3224966-3224985 | Msa0438620:intron | 20.0% |
| !!! | ATTTTTTTCAAAATTCAAGG+TGG | + | chr3_3:3224969-3224988 | Msa0438620:intron | 20.0% |
| !!! | CCTAATAACTTTTAAGAATA+AGG | - | chr3_3:3225056-3225075 | None:intergenic | 20.0% |
| !! | CCTTATTCTTAAAAGTTATT+AGG | + | chr3_3:3225053-3225072 | Msa0438620:intron | 20.0% |
| !! | AAATTAGAGCCAAAAATTTA+GGG | - | chr3_3:3225094-3225113 | None:intergenic | 20.0% |
| !! | AAAAATAAGTGAAAAATCGA+TGG | + | chr3_3:3225200-3225219 | Msa0438620:intron | 20.0% |
| !! | GTTTCTATGAAAATCAAATA+GGG | - | chr3_3:3225467-3225486 | None:intergenic | 20.0% |
| !! | AAAACAAAAATAAAAGATGC+TGG | - | chr3_3:3225530-3225549 | None:intergenic | 20.0% |
| !! | AACTCAAATTCAAACTAAAA+AGG | - | chr3_3:3225701-3225720 | None:intergenic | 20.0% |
| !! | TATTTTGTTGCATTTGAAAG+AGG | + | chr3_3:3224085-3224104 | Msa0438620:intron | 25.0% |
| !! | ATTTTGTTGCATTTGAAAGA+GGG | + | chr3_3:3224086-3224105 | Msa0438620:intron | 25.0% |
| ! | GGATTAAAAAAAATGATACC+GGG | + | chr3_3:3224114-3224133 | Msa0438620:intron | 25.0% |
| ! | GATTAAAAAAAATGATACCG+GGG | + | chr3_3:3224115-3224134 | Msa0438620:intron | 25.0% |
| !!! | GAGTTTTATAAGATATGATG+AGG | + | chr3_3:3224190-3224209 | Msa0438620:intron | 25.0% |
| !! | CTAGATTTTTGTAAGAATGT+TGG | + | chr3_3:3224264-3224283 | Msa0438620:intron | 25.0% |
| ! | TTATGGAAGAAGATGAATAA+AGG | + | chr3_3:3224302-3224321 | Msa0438620:intron | 25.0% |
| !!! | TTTTTAAGAAAGATGACCAT+TGG | - | chr3_3:3224382-3224401 | None:intergenic | 25.0% |
| !!! | AACGTGAGTTTTATTAATTG+TGG | + | chr3_3:3224540-3224559 | Msa0438620:intron | 25.0% |
| !!! | ACGTGAGTTTTATTAATTGT+GGG | + | chr3_3:3224541-3224560 | Msa0438620:intron | 25.0% |
| ! | ATAACTTCTCTTATTCTTCA+AGG | - | chr3_3:3224632-3224651 | None:intergenic | 25.0% |
| !! | CCATATTTTGTGATAAATAG+GGG | + | chr3_3:3224774-3224793 | Msa0438620:intron | 25.0% |
| !! | GATCATATATTTGTTAGATG+TGG | - | chr3_3:3224842-3224861 | None:intergenic | 25.0% |
| !!! | AACTTTTAAGAATAAGGGAA+GGG | - | chr3_3:3225050-3225069 | None:intergenic | 25.0% |
| !!! | TAACTTTTAAGAATAAGGGA+AGG | - | chr3_3:3225051-3225070 | None:intergenic | 25.0% |
| ! | GAAATTAGAGCCAAAAATTT+AGG | - | chr3_3:3225095-3225114 | None:intergenic | 25.0% |
| ! | GGTTTCTATGAAAATCAAAT+AGG | - | chr3_3:3225468-3225487 | None:intergenic | 25.0% |
| ! | AAAAATAAAAGATGCTGGAT+GGG | - | chr3_3:3225525-3225544 | None:intergenic | 25.0% |
| !!! | TTCCATCTGATTTTTTCTTT+TGG | + | chr3_3:3225587-3225606 | Msa0438620:intron | 25.0% |
| !!! | TCCATCTGATTTTTTCTTTT+GGG | + | chr3_3:3225588-3225607 | Msa0438620:intron | 25.0% |
| !!! | TTTTGGGTTATGAATGTTTA+AGG | + | chr3_3:3225604-3225623 | Msa0438620:intron | 25.0% |
| ! | TTGAGAATATTAGAAGTAGA+TGG | + | chr3_3:3225634-3225653 | Msa0438620:intron | 25.0% |
| ! | AATATTAGAAGTAGATGGTT+TGG | + | chr3_3:3225639-3225658 | Msa0438620:intron | 25.0% |
| !! | GTTTGAATTTGAGTTAAGAA+AGG | + | chr3_3:3225706-3225725 | Msa0438620:intron | 25.0% |
| !! | TATTTTGTTGCATTTGAAAG+AGG | + | chr3_3:3224085-3224104 | Msa0438620:intron | 25.0% |
| !! | ATTTTGTTGCATTTGAAAGA+GGG | + | chr3_3:3224086-3224105 | Msa0438620:intron | 25.0% |
| ! | GGATTAAAAAAAATGATACC+GGG | + | chr3_3:3224114-3224133 | Msa0438620:intron | 25.0% |
| ! | GATTAAAAAAAATGATACCG+GGG | + | chr3_3:3224115-3224134 | Msa0438620:intron | 25.0% |
| !!! | GAGTTTTATAAGATATGATG+AGG | + | chr3_3:3224190-3224209 | Msa0438620:intron | 25.0% |
| !! | CTAGATTTTTGTAAGAATGT+TGG | + | chr3_3:3224264-3224283 | Msa0438620:intron | 25.0% |
| ! | TTATGGAAGAAGATGAATAA+AGG | + | chr3_3:3224302-3224321 | Msa0438620:intron | 25.0% |
| !!! | TTTTTAAGAAAGATGACCAT+TGG | - | chr3_3:3224382-3224401 | None:intergenic | 25.0% |
| !!! | AACGTGAGTTTTATTAATTG+TGG | + | chr3_3:3224540-3224559 | Msa0438620:intron | 25.0% |
| !!! | ACGTGAGTTTTATTAATTGT+GGG | + | chr3_3:3224541-3224560 | Msa0438620:intron | 25.0% |
| ! | ATAACTTCTCTTATTCTTCA+AGG | - | chr3_3:3224632-3224651 | None:intergenic | 25.0% |
| !! | CCATATTTTGTGATAAATAG+GGG | + | chr3_3:3224774-3224793 | Msa0438620:intron | 25.0% |
| !! | GATCATATATTTGTTAGATG+TGG | - | chr3_3:3224842-3224861 | None:intergenic | 25.0% |
| !!! | AACTTTTAAGAATAAGGGAA+GGG | - | chr3_3:3225050-3225069 | None:intergenic | 25.0% |
| !!! | TAACTTTTAAGAATAAGGGA+AGG | - | chr3_3:3225051-3225070 | None:intergenic | 25.0% |
| ! | GAAATTAGAGCCAAAAATTT+AGG | - | chr3_3:3225095-3225114 | None:intergenic | 25.0% |
| ! | GGTTTCTATGAAAATCAAAT+AGG | - | chr3_3:3225468-3225487 | None:intergenic | 25.0% |
| ! | AAAAATAAAAGATGCTGGAT+GGG | - | chr3_3:3225525-3225544 | None:intergenic | 25.0% |
| !!! | TTCCATCTGATTTTTTCTTT+TGG | + | chr3_3:3225587-3225606 | Msa0438620:intron | 25.0% |
| !!! | TCCATCTGATTTTTTCTTTT+GGG | + | chr3_3:3225588-3225607 | Msa0438620:intron | 25.0% |
| !!! | TTTTGGGTTATGAATGTTTA+AGG | + | chr3_3:3225604-3225623 | Msa0438620:intron | 25.0% |
| ! | TTGAGAATATTAGAAGTAGA+TGG | + | chr3_3:3225634-3225653 | Msa0438620:intron | 25.0% |
| ! | AATATTAGAAGTAGATGGTT+TGG | + | chr3_3:3225639-3225658 | Msa0438620:intron | 25.0% |
| !! | GTTTGAATTTGAGTTAAGAA+AGG | + | chr3_3:3225706-3225725 | Msa0438620:intron | 25.0% |
| ! | CGCATGTCTATTTTATCTTA+CGG | - | chr3_3:3224355-3224374 | None:intergenic | 30.0% |
| GAAATTATTTAGAGGACCAA+TGG | + | chr3_3:3224579-3224598 | Msa0438620:intron | 30.0% | |
| TTTAGGCTTATTTGATCCAT+TGG | - | chr3_3:3224598-3224617 | None:intergenic | 30.0% | |
| CCCCTATTTATCACAAAATA+TGG | - | chr3_3:3224777-3224796 | None:intergenic | 30.0% | |
| ATAATTGTGATGAAAGAGAG+AGG | - | chr3_3:3225001-3225020 | None:intergenic | 30.0% | |
| ! | ACCACTAAACCCTAAATTTT+TGG | + | chr3_3:3225082-3225101 | Msa0438620:intron | 30.0% |
| !!! | TTGGGAGGGAAATATTTTTT+GGG | - | chr3_3:3225144-3225163 | None:intergenic | 30.0% |
| !!! | TTTGGGAGGGAAATATTTTT+TGG | - | chr3_3:3225145-3225164 | None:intergenic | 30.0% |
| GAAAAATTCGCAATTCAAAC+TGG | - | chr3_3:3225174-3225193 | None:intergenic | 30.0% | |
| AAAAATCGATGGCATTTACT+AGG | + | chr3_3:3225211-3225230 | Msa0438620:intron | 30.0% | |
| AAAATCGATGGCATTTACTA+GGG | + | chr3_3:3225212-3225231 | Msa0438620:intron | 30.0% | |
| ! | CGTGATATTTGTTAACCTTT+AGG | + | chr3_3:3225249-3225268 | Msa0438620:intron | 30.0% |
| AAGAGAAAAAGAAGTGATTC+AGG | - | chr3_3:3225364-3225383 | None:intergenic | 30.0% | |
| TCAAATAGGGAAAGTGAAAA+TGG | - | chr3_3:3225454-3225473 | None:intergenic | 30.0% | |
| CAAAAATAAAAGATGCTGGA+TGG | - | chr3_3:3225526-3225545 | None:intergenic | 30.0% | |
| ACCCAAAAGAAAAAATCAGA+TGG | - | chr3_3:3225592-3225611 | None:intergenic | 30.0% | |
| !!! | ATTTGTGCTTTTTTAGTTGC+AGG | + | chr3_3:3225753-3225772 | Msa0438620:intron | 30.0% |
| ! | CGCATGTCTATTTTATCTTA+CGG | - | chr3_3:3224355-3224374 | None:intergenic | 30.0% |
| GAAATTATTTAGAGGACCAA+TGG | + | chr3_3:3224579-3224598 | Msa0438620:intron | 30.0% | |
| TTTAGGCTTATTTGATCCAT+TGG | - | chr3_3:3224598-3224617 | None:intergenic | 30.0% | |
| CCCCTATTTATCACAAAATA+TGG | - | chr3_3:3224777-3224796 | None:intergenic | 30.0% | |
| ATAATTGTGATGAAAGAGAG+AGG | - | chr3_3:3225001-3225020 | None:intergenic | 30.0% | |
| ! | ACCACTAAACCCTAAATTTT+TGG | + | chr3_3:3225082-3225101 | Msa0438620:intron | 30.0% |
| !!! | TTGGGAGGGAAATATTTTTT+GGG | - | chr3_3:3225144-3225163 | None:intergenic | 30.0% |
| !!! | TTTGGGAGGGAAATATTTTT+TGG | - | chr3_3:3225145-3225164 | None:intergenic | 30.0% |
| GAAAAATTCGCAATTCAAAC+TGG | - | chr3_3:3225174-3225193 | None:intergenic | 30.0% | |
| AAAAATCGATGGCATTTACT+AGG | + | chr3_3:3225211-3225230 | Msa0438620:intron | 30.0% | |
| AAAATCGATGGCATTTACTA+GGG | + | chr3_3:3225212-3225231 | Msa0438620:intron | 30.0% | |
| ! | CGTGATATTTGTTAACCTTT+AGG | + | chr3_3:3225249-3225268 | Msa0438620:intron | 30.0% |
| AAGAGAAAAAGAAGTGATTC+AGG | - | chr3_3:3225364-3225383 | None:intergenic | 30.0% | |
| TCAAATAGGGAAAGTGAAAA+TGG | - | chr3_3:3225454-3225473 | None:intergenic | 30.0% | |
| CAAAAATAAAAGATGCTGGA+TGG | - | chr3_3:3225526-3225545 | None:intergenic | 30.0% | |
| ACCCAAAAGAAAAAATCAGA+TGG | - | chr3_3:3225592-3225611 | None:intergenic | 30.0% | |
| !!! | ATTTGTGCTTTTTTAGTTGC+AGG | + | chr3_3:3225753-3225772 | Msa0438620:intron | 30.0% |
| GCTAAAATGAGAAAGTTGAG+TGG | + | chr3_3:3223989-3224008 | Msa0438620:CDS | 35.0% | |
| TAATTGGACTTTAATCTCCC+CGG | - | chr3_3:3224135-3224154 | None:intergenic | 35.0% | |
| ! | ATGAGGAATGTTGTTGTTGA+TGG | + | chr3_3:3224207-3224226 | Msa0438620:intron | 35.0% |
| AATAGACATGCGTAATCCAA+TGG | + | chr3_3:3224363-3224382 | Msa0438620:intron | 35.0% | |
| !! | TGGTGGACTATCTATAATGT+TGG | + | chr3_3:3224441-3224460 | Msa0438620:intron | 35.0% |
| !!! | TCAAGGCTTGCTGTTTTTTT+AGG | - | chr3_3:3224615-3224634 | None:intergenic | 35.0% |
| ACAAAATATGGTAGCTTCAC+TGG | - | chr3_3:3224765-3224784 | None:intergenic | 35.0% | |
| ! | TTTGTGATAAATAGGGGTGT+TGG | + | chr3_3:3224780-3224799 | Msa0438620:intron | 35.0% |
| !! | TTGTGATAAATAGGGGTGTT+GGG | + | chr3_3:3224781-3224800 | Msa0438620:intron | 35.0% |
| ! | GCCAAAAATTTAGGGTTTAG+TGG | - | chr3_3:3225086-3225105 | None:intergenic | 35.0% |
| CACAGCATTAAATGCTAATC+AGG | + | chr3_3:3225114-3225133 | Msa0438620:intron | 35.0% | |
| ATTCAAACTGGCATGGATTT+GGG | - | chr3_3:3225162-3225181 | None:intergenic | 35.0% | |
| AATTCAAACTGGCATGGATT+TGG | - | chr3_3:3225163-3225182 | None:intergenic | 35.0% | |
| ATTGGACATTGAGAACCTAA+AGG | - | chr3_3:3225267-3225286 | None:intergenic | 35.0% | |
| !! | GGAAACAATTTTGAGAGATG+AGG | - | chr3_3:3225303-3225322 | None:intergenic | 35.0% |
| ATTCTCTTTGTCTAGTGAGT+GGG | - | chr3_3:3225427-3225446 | None:intergenic | 35.0% | |
| AATCAAACCTGTCACAGTTA+GGG | - | chr3_3:3225496-3225515 | None:intergenic | 35.0% | |
| AAATCAAACCTGTCACAGTT+AGG | - | chr3_3:3225497-3225516 | None:intergenic | 35.0% | |
| ATCAGAATACACATCACCTT+GGG | - | chr3_3:3225674-3225693 | None:intergenic | 35.0% | |
| AATCAGAATACACATCACCT+TGG | - | chr3_3:3225675-3225694 | None:intergenic | 35.0% | |
| GCTAAAATGAGAAAGTTGAG+TGG | + | chr3_3:3223989-3224008 | Msa0438620:CDS | 35.0% | |
| TAATTGGACTTTAATCTCCC+CGG | - | chr3_3:3224135-3224154 | None:intergenic | 35.0% | |
| ! | ATGAGGAATGTTGTTGTTGA+TGG | + | chr3_3:3224207-3224226 | Msa0438620:intron | 35.0% |
| AATAGACATGCGTAATCCAA+TGG | + | chr3_3:3224363-3224382 | Msa0438620:intron | 35.0% | |
| !! | TGGTGGACTATCTATAATGT+TGG | + | chr3_3:3224441-3224460 | Msa0438620:intron | 35.0% |
| !!! | TCAAGGCTTGCTGTTTTTTT+AGG | - | chr3_3:3224615-3224634 | None:intergenic | 35.0% |
| ACAAAATATGGTAGCTTCAC+TGG | - | chr3_3:3224765-3224784 | None:intergenic | 35.0% | |
| ! | TTTGTGATAAATAGGGGTGT+TGG | + | chr3_3:3224780-3224799 | Msa0438620:intron | 35.0% |
| !! | TTGTGATAAATAGGGGTGTT+GGG | + | chr3_3:3224781-3224800 | Msa0438620:intron | 35.0% |
| ! | GCCAAAAATTTAGGGTTTAG+TGG | - | chr3_3:3225086-3225105 | None:intergenic | 35.0% |
| CACAGCATTAAATGCTAATC+AGG | + | chr3_3:3225114-3225133 | Msa0438620:intron | 35.0% | |
| ATTCAAACTGGCATGGATTT+GGG | - | chr3_3:3225162-3225181 | None:intergenic | 35.0% | |
| AATTCAAACTGGCATGGATT+TGG | - | chr3_3:3225163-3225182 | None:intergenic | 35.0% | |
| ATTGGACATTGAGAACCTAA+AGG | - | chr3_3:3225267-3225286 | None:intergenic | 35.0% | |
| !! | GGAAACAATTTTGAGAGATG+AGG | - | chr3_3:3225303-3225322 | None:intergenic | 35.0% |
| ATTCTCTTTGTCTAGTGAGT+GGG | - | chr3_3:3225427-3225446 | None:intergenic | 35.0% | |
| AATCAAACCTGTCACAGTTA+GGG | - | chr3_3:3225496-3225515 | None:intergenic | 35.0% | |
| AAATCAAACCTGTCACAGTT+AGG | - | chr3_3:3225497-3225516 | None:intergenic | 35.0% | |
| ATCAGAATACACATCACCTT+GGG | - | chr3_3:3225674-3225693 | None:intergenic | 35.0% | |
| AATCAGAATACACATCACCT+TGG | - | chr3_3:3225675-3225694 | None:intergenic | 35.0% | |
| TTTCACTGAGACAGTAGCAA+TGG | - | chr3_3:3224044-3224063 | None:intergenic | 40.0% | |
| GGTGAAGATGATGCAGTTTA+TGG | + | chr3_3:3224285-3224304 | Msa0438620:intron | 40.0% | |
| TTGGTCCACCATAGACATTT+GGG | + | chr3_3:3224460-3224479 | Msa0438620:intron | 40.0% | |
| GTTTAACCCCCAAATGTCTA+TGG | - | chr3_3:3224471-3224490 | None:intergenic | 40.0% | |
| TGGGGGTTAAACTTAACAGT+CGG | + | chr3_3:3224479-3224498 | Msa0438620:intron | 40.0% | |
| CTTAACAGTCGGGGTTTATT+TGG | + | chr3_3:3224490-3224509 | Msa0438620:intron | 40.0% | |
| GTTTACTAACTCATGACACG+TGG | + | chr3_3:3224726-3224745 | Msa0438620:intron | 40.0% | |
| ATTCGCAATTCAAACTGGCA+TGG | - | chr3_3:3225169-3225188 | None:intergenic | 40.0% | |
| !! | CAATTTTGAGAGATGAGGAG+AGG | - | chr3_3:3225298-3225317 | None:intergenic | 40.0% |
| CTCCTTAATTTCTACTTCCG+CGG | + | chr3_3:3225322-3225341 | Msa0438620:intron | 40.0% | |
| ! | AGAAGGGCGTGATTGATTTA+AGG | - | chr3_3:3225392-3225411 | None:intergenic | 40.0% |
| TGGGTCGAGATTGTAAAGAA+GGG | - | chr3_3:3225408-3225427 | None:intergenic | 40.0% | |
| CATTCTCTTTGTCTAGTGAG+TGG | - | chr3_3:3225428-3225447 | None:intergenic | 40.0% | |
| TGGAACGCAACAAAACATGA+AGG | - | chr3_3:3225572-3225591 | None:intergenic | 40.0% | |
| TCAGAATACACATCACCTTG+GGG | - | chr3_3:3225673-3225692 | None:intergenic | 40.0% | |
| TTTCACTGAGACAGTAGCAA+TGG | - | chr3_3:3224044-3224063 | None:intergenic | 40.0% | |
| GGTGAAGATGATGCAGTTTA+TGG | + | chr3_3:3224285-3224304 | Msa0438620:intron | 40.0% | |
| TTGGTCCACCATAGACATTT+GGG | + | chr3_3:3224460-3224479 | Msa0438620:intron | 40.0% | |
| GTTTAACCCCCAAATGTCTA+TGG | - | chr3_3:3224471-3224490 | None:intergenic | 40.0% | |
| TGGGGGTTAAACTTAACAGT+CGG | + | chr3_3:3224479-3224498 | Msa0438620:intron | 40.0% | |
| CTTAACAGTCGGGGTTTATT+TGG | + | chr3_3:3224490-3224509 | Msa0438620:intron | 40.0% | |
| GTTTACTAACTCATGACACG+TGG | + | chr3_3:3224726-3224745 | Msa0438620:intron | 40.0% | |
| ATTCGCAATTCAAACTGGCA+TGG | - | chr3_3:3225169-3225188 | None:intergenic | 40.0% | |
| !! | CAATTTTGAGAGATGAGGAG+AGG | - | chr3_3:3225298-3225317 | None:intergenic | 40.0% |
| CTCCTTAATTTCTACTTCCG+CGG | + | chr3_3:3225322-3225341 | Msa0438620:intron | 40.0% | |
| ! | AGAAGGGCGTGATTGATTTA+AGG | - | chr3_3:3225392-3225411 | None:intergenic | 40.0% |
| TGGGTCGAGATTGTAAAGAA+GGG | - | chr3_3:3225408-3225427 | None:intergenic | 40.0% | |
| CATTCTCTTTGTCTAGTGAG+TGG | - | chr3_3:3225428-3225447 | None:intergenic | 40.0% | |
| TGGAACGCAACAAAACATGA+AGG | - | chr3_3:3225572-3225591 | None:intergenic | 40.0% | |
| TCAGAATACACATCACCTTG+GGG | - | chr3_3:3225673-3225692 | None:intergenic | 40.0% | |
| AGAAGGCTAGTGTCTTCTCA+AGG | + | chr3_3:3223936-3223955 | Msa0438620:CDS | 45.0% | |
| GCAGCAGCTTCTTTCTCATA+AGG | - | chr3_3:3223971-3223990 | None:intergenic | 45.0% | |
| GTTGAGTGGTACTTCATCAG+TGG | + | chr3_3:3224003-3224022 | Msa0438620:CDS | 45.0% | |
| GTTGGTCCACCATAGACATT+TGG | + | chr3_3:3224459-3224478 | Msa0438620:intron | 45.0% | |
| TGGTCCACCATAGACATTTG+GGG | + | chr3_3:3224461-3224480 | Msa0438620:intron | 45.0% | |
| TAACCCCCAAATGTCTATGG+TGG | - | chr3_3:3224468-3224487 | None:intergenic | 45.0% | |
| GGGGGTTAAACTTAACAGTC+GGG | + | chr3_3:3224480-3224499 | Msa0438620:intron | 45.0% | |
| GGGGTTAAACTTAACAGTCG+GGG | + | chr3_3:3224481-3224500 | Msa0438620:intron | 45.0% | |
| GTCGGGGTTTATTTGGCAAA+CGG | + | chr3_3:3224497-3224516 | Msa0438620:intron | 45.0% | |
| GCAAACGGAGGAAAAAGTGA+GGG | + | chr3_3:3224512-3224531 | Msa0438620:intron | 45.0% | |
| AACAAAGCCAGACATCCATG+CGG | + | chr3_3:3224693-3224712 | Msa0438620:intron | 45.0% | |
| TAAACGTCTTTGACACCGCA+TGG | - | chr3_3:3224711-3224730 | None:intergenic | 45.0% | |
| AAACTGGCATGGATTTGGGA+GGG | - | chr3_3:3225158-3225177 | None:intergenic | 45.0% | |
| TGAGGAGAGGAGAGAGAAAT+TGG | - | chr3_3:3225285-3225304 | None:intergenic | 45.0% | |
| CGCGGAAGTAGAAATTAAGG+AGG | - | chr3_3:3225324-3225343 | None:intergenic | 45.0% | |
| GACCGCGGAAGTAGAAATTA+AGG | - | chr3_3:3225327-3225346 | None:intergenic | 45.0% | |
| GAAGAAAGAAAGAGAGACCG+CGG | - | chr3_3:3225342-3225361 | None:intergenic | 45.0% | |
| GTGGGTCGAGATTGTAAAGA+AGG | - | chr3_3:3225409-3225428 | None:intergenic | 45.0% | |
| CAGAATACACATCACCTTGG+GGG | - | chr3_3:3225672-3225691 | None:intergenic | 45.0% | |
| AGAAGGCTAGTGTCTTCTCA+AGG | + | chr3_3:3223936-3223955 | Msa0438620:CDS | 45.0% | |
| GCAGCAGCTTCTTTCTCATA+AGG | - | chr3_3:3223971-3223990 | None:intergenic | 45.0% | |
| GTTGAGTGGTACTTCATCAG+TGG | + | chr3_3:3224003-3224022 | Msa0438620:CDS | 45.0% | |
| GTTGGTCCACCATAGACATT+TGG | + | chr3_3:3224459-3224478 | Msa0438620:intron | 45.0% | |
| TGGTCCACCATAGACATTTG+GGG | + | chr3_3:3224461-3224480 | Msa0438620:intron | 45.0% | |
| TAACCCCCAAATGTCTATGG+TGG | - | chr3_3:3224468-3224487 | None:intergenic | 45.0% | |
| GGGGGTTAAACTTAACAGTC+GGG | + | chr3_3:3224480-3224499 | Msa0438620:intron | 45.0% | |
| GGGGTTAAACTTAACAGTCG+GGG | + | chr3_3:3224481-3224500 | Msa0438620:intron | 45.0% | |
| GTCGGGGTTTATTTGGCAAA+CGG | + | chr3_3:3224497-3224516 | Msa0438620:intron | 45.0% | |
| GCAAACGGAGGAAAAAGTGA+GGG | + | chr3_3:3224512-3224531 | Msa0438620:intron | 45.0% | |
| AACAAAGCCAGACATCCATG+CGG | + | chr3_3:3224693-3224712 | Msa0438620:intron | 45.0% | |
| TAAACGTCTTTGACACCGCA+TGG | - | chr3_3:3224711-3224730 | None:intergenic | 45.0% | |
| AAACTGGCATGGATTTGGGA+GGG | - | chr3_3:3225158-3225177 | None:intergenic | 45.0% | |
| TGAGGAGAGGAGAGAGAAAT+TGG | - | chr3_3:3225285-3225304 | None:intergenic | 45.0% | |
| CGCGGAAGTAGAAATTAAGG+AGG | - | chr3_3:3225324-3225343 | None:intergenic | 45.0% | |
| GACCGCGGAAGTAGAAATTA+AGG | - | chr3_3:3225327-3225346 | None:intergenic | 45.0% | |
| GAAGAAAGAAAGAGAGACCG+CGG | - | chr3_3:3225342-3225361 | None:intergenic | 45.0% | |
| GTGGGTCGAGATTGTAAAGA+AGG | - | chr3_3:3225409-3225428 | None:intergenic | 45.0% | |
| CAGAATACACATCACCTTGG+GGG | - | chr3_3:3225672-3225691 | None:intergenic | 45.0% | |
| !! | AATCTTAAATAAAAATTAAT+TGG | - | chr3_3:3224151-3224170 | None:intergenic | 5.0% |
| !! | AATCTTAAATAAAAATTAAT+TGG | - | chr3_3:3224151-3224170 | None:intergenic | 5.0% |
| AGCTTGTGCTGCCTTAGACA+AGG | - | chr3_3:3223882-3223901 | None:intergenic | 50.0% | |
| AGCTACGACGACAGAACCAA+CGG | + | chr3_3:3223898-3223917 | Msa0438620:CDS | 50.0% | |
| ! | TGTTTTCGATCTGCAGCCGT+TGG | - | chr3_3:3223917-3223936 | None:intergenic | 50.0% |
| GGCTGCAGATCGAAAACAGA+AGG | + | chr3_3:3223919-3223938 | Msa0438620:CDS | 50.0% | |
| CACTGAGACAGTAGCAATGG+CGG | - | chr3_3:3224041-3224060 | None:intergenic | 50.0% | |
| TGCATTTGAAAGAGGGCCGT+TGG | + | chr3_3:3224093-3224112 | Msa0438620:intron | 50.0% | |
| GGTCCACCATAGACATTTGG+GGG | + | chr3_3:3224462-3224481 | Msa0438620:intron | 50.0% | |
| GGGGTTTATTTGGCAAACGG+AGG | + | chr3_3:3224500-3224519 | Msa0438620:intron | 50.0% | |
| GGCAAACGGAGGAAAAAGTG+AGG | + | chr3_3:3224511-3224530 | Msa0438620:intron | 50.0% | |
| TTTGACACCGCATGGATGTC+TGG | - | chr3_3:3224703-3224722 | None:intergenic | 50.0% | |
| CAAACTGGCATGGATTTGGG+AGG | - | chr3_3:3225159-3225178 | None:intergenic | 50.0% | |
| CCTGTCACAGTTAGGGTTGA+GGG | - | chr3_3:3225489-3225508 | None:intergenic | 50.0% | |
| ACCTGTCACAGTTAGGGTTG+AGG | - | chr3_3:3225490-3225509 | None:intergenic | 50.0% | |
| AGCTTGTGCTGCCTTAGACA+AGG | - | chr3_3:3223882-3223901 | None:intergenic | 50.0% | |
| AGCTACGACGACAGAACCAA+CGG | + | chr3_3:3223898-3223917 | Msa0438620:CDS | 50.0% | |
| ! | TGTTTTCGATCTGCAGCCGT+TGG | - | chr3_3:3223917-3223936 | None:intergenic | 50.0% |
| GGCTGCAGATCGAAAACAGA+AGG | + | chr3_3:3223919-3223938 | Msa0438620:CDS | 50.0% | |
| CACTGAGACAGTAGCAATGG+CGG | - | chr3_3:3224041-3224060 | None:intergenic | 50.0% | |
| TGCATTTGAAAGAGGGCCGT+TGG | + | chr3_3:3224093-3224112 | Msa0438620:intron | 50.0% | |
| GGTCCACCATAGACATTTGG+GGG | + | chr3_3:3224462-3224481 | Msa0438620:intron | 50.0% | |
| GGGGTTTATTTGGCAAACGG+AGG | + | chr3_3:3224500-3224519 | Msa0438620:intron | 50.0% | |
| GGCAAACGGAGGAAAAAGTG+AGG | + | chr3_3:3224511-3224530 | Msa0438620:intron | 50.0% | |
| TTTGACACCGCATGGATGTC+TGG | - | chr3_3:3224703-3224722 | None:intergenic | 50.0% | |
| CAAACTGGCATGGATTTGGG+AGG | - | chr3_3:3225159-3225178 | None:intergenic | 50.0% | |
| CCTGTCACAGTTAGGGTTGA+GGG | - | chr3_3:3225489-3225508 | None:intergenic | 50.0% | |
| ACCTGTCACAGTTAGGGTTG+AGG | - | chr3_3:3225490-3225509 | None:intergenic | 50.0% | |
| TGAGACAGTAGCAATGGCGG+CGG | - | chr3_3:3224038-3224057 | None:intergenic | 55.0% | |
| CCCTCAACCCTAACTGTGAC+AGG | + | chr3_3:3225486-3225505 | Msa0438620:intron | 55.0% | |
| ! | GGTTTGGTTTCAGACCCCCA+AGG | + | chr3_3:3225655-3225674 | Msa0438620:intron | 55.0% |
| TGAGACAGTAGCAATGGCGG+CGG | - | chr3_3:3224038-3224057 | None:intergenic | 55.0% | |
| CCCTCAACCCTAACTGTGAC+AGG | + | chr3_3:3225486-3225505 | Msa0438620:intron | 55.0% | |
| ! | GGTTTGGTTTCAGACCCCCA+AGG | + | chr3_3:3225655-3225674 | Msa0438620:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 3223869 | 3225780 | 3223869 | ID=Msa0438620;Name=Msa0438620 |
| chr3_3 | mRNA | 3223869 | 3225780 | 3223869 | ID=Msa0438620-mRNA-1;Parent=Msa0438620;Name=Msa0438620-mRNA-1;_AED=0.64;_eAED=0.71;_QI=0|0|0|0.33|1|1|3|0|75 |
| chr3_3 | exon | 3223869 | 3224081 | 3223869 | ID=Msa0438620-mRNA-1:exon:727;Parent=Msa0438620-mRNA-1 |
| chr3_3 | exon | 3225668 | 3225676 | 3225668 | ID=Msa0438620-mRNA-1:exon:728;Parent=Msa0438620-mRNA-1 |
| chr3_3 | exon | 3225775 | 3225780 | 3225775 | ID=Msa0438620-mRNA-1:exon:729;Parent=Msa0438620-mRNA-1 |
| chr3_3 | CDS | 3223869 | 3224081 | 3223869 | ID=Msa0438620-mRNA-1:cds;Parent=Msa0438620-mRNA-1 |
| chr3_3 | CDS | 3225668 | 3225676 | 3225668 | ID=Msa0438620-mRNA-1:cds;Parent=Msa0438620-mRNA-1 |
| chr3_3 | CDS | 3225775 | 3225780 | 3225775 | ID=Msa0438620-mRNA-1:cds;Parent=Msa0438620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
