Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128490 | GAU31652.1 | 83.623 | 403 | 26 | 2 | 1 | 375 | 1 | 391 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128490 | sp|Q16773|KAT1_HUMAN | 34.198 | 424 | 201 | 9 | 6 | 364 | 7 | 417 | 5.39e-68 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128490 | A0A2Z6N458 | 83.623 | 403 | 26 | 2 | 1 | 375 | 1 | 391 | 0.0 | 683 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009210 | Msa0128490 | 0.800282 | 1.550606e-48 | -8.615850e-47 |
| Msa0030640 | Msa0128490 | 0.845235 | 4.607948e-59 | -8.615850e-47 |
| Msa0082100 | Msa0128490 | 0.819455 | 1.150980e-52 | -8.615850e-47 |
| Msa0109380 | Msa0128490 | 0.825282 | 5.102193e-54 | -8.615850e-47 |
| Msa0112290 | Msa0128490 | 0.807752 | 4.334403e-50 | -8.615850e-47 |
| Msa0128490 | Msa0175280 | 0.802623 | 5.138658e-49 | -8.615850e-47 |
| Msa0128490 | Msa0181380 | 0.803727 | 3.036830e-49 | -8.615850e-47 |
| Msa0128490 | Msa0247310 | 0.803941 | 2.741545e-49 | -8.615850e-47 |
| Msa0128490 | Msa0258410 | 0.802335 | 5.891682e-49 | -8.615850e-47 |
| Msa0128490 | Msa0266100 | 0.801567 | 8.470604e-49 | -8.615850e-47 |
| Msa0128490 | Msa0269830 | 0.816141 | 6.443200e-52 | -8.615850e-47 |
| Msa0128490 | Msa0288360 | 0.808877 | 2.496076e-50 | -8.615850e-47 |
| Msa0128490 | Msa0371870 | 0.800898 | 1.161178e-48 | -8.615850e-47 |
| Msa0128490 | Msa0379450 | 0.813527 | 2.446795e-51 | -8.615850e-47 |
| Msa0128490 | Msa0401370 | 0.800013 | 1.758810e-48 | -8.615850e-47 |
| Msa0128490 | Msa0426480 | 0.808826 | 2.559516e-50 | -8.615850e-47 |
| Msa0128490 | Msa0436310 | 0.806963 | 6.373125e-50 | -8.615850e-47 |
| Msa0128490 | Msa0466340 | 0.800569 | 1.355329e-48 | -8.615850e-47 |
| Msa0128490 | Msa0475130 | 0.830228 | 3.304920e-55 | -8.615850e-47 |
| Msa0128490 | Msa0485350 | 0.802340 | 5.875839e-49 | -8.615850e-47 |
| Msa0128490 | Msa0516330 | 0.805491 | 1.301184e-49 | -8.615850e-47 |
| Msa0128490 | Msa0621870 | 0.813641 | 2.309618e-51 | -8.615850e-47 |
| Msa0128490 | Msa0647710 | 0.800881 | 1.170645e-48 | -8.615850e-47 |
| Msa0128490 | Msa0652360 | 0.812889 | 3.378337e-51 | -8.615850e-47 |
| Msa0128490 | Msa0720380 | 0.802452 | 5.571787e-49 | -8.615850e-47 |
| Msa0128490 | Msa0748890 | 0.824685 | 7.059541e-54 | -8.615850e-47 |
| Msa0128490 | Msa0760950 | 0.800657 | 1.300475e-48 | -8.615850e-47 |
| Msa0128490 | Msa0775970 | 0.800497 | 1.401723e-48 | -8.615850e-47 |
| Msa0128490 | Msa0893390 | 0.822664 | 2.098678e-53 | -8.615850e-47 |
| Msa0128490 | Msa1021220 | 0.831130 | 1.987452e-55 | -8.615850e-47 |
| Msa0128490 | Msa1022310 | 0.801137 | 1.037740e-48 | -8.615850e-47 |
| Msa0128490 | Msa1067430 | 0.810521 | 1.105830e-50 | -8.615850e-47 |
| Msa0128490 | Msa1110350 | 0.804815 | 1.802123e-49 | -8.615850e-47 |
| Msa0128490 | Msa1154020 | 0.807585 | 4.703383e-50 | -8.615850e-47 |
| Msa0128490 | Msa1208750 | 0.835613 | 1.515528e-56 | -8.615850e-47 |
| Msa0128490 | Msa1265990 | 0.807871 | 4.089228e-50 | -8.615850e-47 |
| Msa0128490 | Msa1269550 | 0.809376 | 1.950931e-50 | -8.615850e-47 |
| Msa0128490 | Msa1376560 | 0.803288 | 3.745098e-49 | -8.615850e-47 |
| Msa0128490 | Msa1393200 | 0.810255 | 1.262153e-50 | -8.615850e-47 |
| Msa0128490 | Msa1409530 | 0.801818 | 7.523337e-49 | -8.615850e-47 |
| Msa0128490 | Msa1411690 | 0.803481 | 3.414671e-49 | -8.615850e-47 |
| Msa0128490 | Msa1412750 | 0.800395 | 1.470771e-48 | -8.615850e-47 |
| Msa0128490 | Msa1415250 | 0.817096 | 3.937225e-52 | -8.615850e-47 |
| Msa0128490 | Msa1424240 | 0.804357 | 2.245723e-49 | -8.615850e-47 |
| Msa0128490 | Msa1429390 | 0.811659 | 6.267625e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128490 | MtrunA17_Chr1g0195061 | 90.571 | 403 | 10 | 1 | 1 | 375 | 1 | 403 | 0.0 | 744 |
| Msa0128490 | MtrunA17_Chr3g0114811 | 37.563 | 394 | 202 | 7 | 4 | 366 | 63 | 443 | 9.11e-87 | 269 |
| Msa0128490 | MtrunA17_Chr3g0114831 | 36.294 | 394 | 207 | 7 | 4 | 366 | 426 | 806 | 6.80e-79 | 258 |
| Msa0128490 | MtrunA17_Chr3g0114831 | 32.659 | 346 | 175 | 6 | 4 | 318 | 10 | 328 | 1.29e-52 | 186 |
| Msa0128490 | MtrunA17_Chr8g0382671 | 30.287 | 383 | 203 | 12 | 30 | 366 | 102 | 466 | 1.14e-36 | 138 |
| Msa0128490 | MtrunA17_Chr7g0267911 | 30.287 | 383 | 203 | 12 | 30 | 366 | 100 | 464 | 1.31e-35 | 135 |
| Msa0128490 | MtrunA17_Chr4g0004131 | 23.810 | 357 | 224 | 10 | 3 | 319 | 5 | 353 | 7.93e-21 | 93.2 |
| Msa0128490 | MtrunA17_Chr8g0360241 | 25.180 | 278 | 158 | 9 | 87 | 319 | 107 | 379 | 3.84e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128490 | AT1G77670.1 | 38.832 | 394 | 197 | 7 | 4 | 366 | 56 | 436 | 1.37e-89 | 277 |
| Msa0128490 | AT2G22250.1 | 29.381 | 388 | 202 | 11 | 30 | 367 | 55 | 420 | 3.32e-39 | 145 |
| Msa0128490 | AT2G22250.3 | 29.381 | 388 | 202 | 11 | 30 | 367 | 102 | 467 | 7.37e-39 | 145 |
| Msa0128490 | AT2G22250.2 | 29.381 | 388 | 202 | 11 | 30 | 367 | 102 | 467 | 7.37e-39 | 145 |
| Msa0128490 | AT5G36160.1 | 26.286 | 350 | 191 | 15 | 29 | 321 | 44 | 383 | 1.28e-18 | 87.4 |
| Msa0128490 | AT1G80360.3 | 23.316 | 386 | 241 | 12 | 3 | 341 | 5 | 382 | 1.75e-17 | 83.6 |
| Msa0128490 | AT1G80360.2 | 23.316 | 386 | 241 | 12 | 3 | 341 | 5 | 382 | 1.75e-17 | 83.6 |
| Msa0128490 | AT1G80360.4 | 23.316 | 386 | 241 | 12 | 3 | 341 | 5 | 382 | 1.75e-17 | 83.6 |
| Msa0128490 | AT1G80360.1 | 23.316 | 386 | 241 | 12 | 3 | 341 | 5 | 382 | 1.75e-17 | 83.6 |
| Msa0128490 | AT2G24850.1 | 26.147 | 218 | 133 | 10 | 137 | 332 | 196 | 407 | 5.64e-12 | 67.4 |
| Msa0128490 | AT4G28410.2 | 24.503 | 302 | 196 | 14 | 46 | 322 | 116 | 410 | 9.94e-12 | 66.6 |
| Msa0128490 | AT4G28410.1 | 24.667 | 300 | 194 | 14 | 46 | 320 | 116 | 408 | 1.06e-11 | 66.2 |
| Msa0128490 | AT4G23600.2 | 23.671 | 207 | 127 | 8 | 137 | 322 | 77 | 273 | 5.67e-11 | 63.5 |
| Msa0128490 | AT4G23600.1 | 23.671 | 207 | 127 | 8 | 137 | 322 | 181 | 377 | 5.77e-11 | 63.9 |
Find 108 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATTTCCTTCACCATTT+TGG | 0.194310 | 1_3:+58243282 | None:intergenic |
| CAAATAGCTACATCCGTTTC+AGG | 0.219246 | 1_3:+58243244 | None:intergenic |
| TAAATTAAGAGATGAATATT+TGG | 0.230202 | 1_3:-58240231 | Msa0128490:three_prime_UTR |
| CTCAGGGATTCAAAGTATTC+AGG | 0.232091 | 1_3:+58241323 | None:intergenic |
| AGTAACTAACTAGTTGTATT+TGG | 0.238878 | 1_3:-58240364 | Msa0128490:three_prime_UTR |
| AAGTATTGCGTCGCTCTTAT+AGG | 0.244782 | 1_3:+58240321 | None:intergenic |
| TAAACCATTGTTAACTTAAC+TGG | 0.258567 | 1_3:-58240193 | Msa0128490:three_prime_UTR |
| CTGTTATAGCCAGGCAATTT+CGG | 0.264498 | 1_3:+58242038 | None:intergenic |
| CATCTTGCGCTATATTAAAT+TGG | 0.276815 | 1_3:-58240501 | Msa0128490:exon |
| ATATCCCTTGCCTCATTTCC+AGG | 0.299458 | 1_3:-58241641 | Msa0128490:CDS |
| AATTAATGAAGTTTGTAATC+TGG | 0.305452 | 1_3:-58240419 | Msa0128490:three_prime_UTR |
| ATAGTCCGTTCTTGCATTCC+TGG | 0.309721 | 1_3:+58241623 | None:intergenic |
| GCCGGGGTGGTGGCTGTTCC+AGG | 0.313509 | 1_3:-58240678 | Msa0128490:CDS |
| TTTGATCTCTTACTCTTCTC+AGG | 0.314653 | 1_3:+58241306 | None:intergenic |
| TTGGTTGAGGTCGGAATTAA+TGG | 0.319771 | 1_3:+58243419 | None:intergenic |
| TAGAAGTTTCATTTGATGAT+AGG | 0.323856 | 1_3:+58240634 | None:intergenic |
| TGAAGGATCACTACTATAAC+TGG | 0.333345 | 1_3:-58240163 | Msa0128490:three_prime_UTR |
| CAAACCTGATGTATCTCTTC+TGG | 0.339394 | 1_3:+58240595 | None:intergenic |
| TGGAGAGGAGCAGGGAAGTC+AGG | 0.351842 | 1_3:+58243465 | None:intergenic |
| GATTGTGGTTTAACATCAAC+TGG | 0.352025 | 1_3:-58240292 | Msa0128490:three_prime_UTR |
| TAAATTGGTAGAAAGAATAA+TGG | 0.355047 | 1_3:-58240486 | Msa0128490:three_prime_UTR |
| GGTGGTGGCTGTTCCAGGAC+AGG | 0.388445 | 1_3:-58240673 | Msa0128490:CDS |
| ATGTGAACACTTGGCCAAAA+TGG | 0.390216 | 1_3:-58243296 | Msa0128490:CDS |
| CATTAAGTTGCTTGCGGGAG+TGG | 0.395415 | 1_3:-58240895 | Msa0128490:CDS |
| AAAGAAAGAAAGGAAAAGAA+TGG | 0.401522 | 1_3:-58243592 | Msa0128490:exon |
| TAAGATACAGTTTATACCTC+AGG | 0.403429 | 1_3:-58240868 | Msa0128490:CDS |
| ACATCCTTGATATGTTTCAT+AGG | 0.418151 | 1_3:+58242889 | None:intergenic |
| ATTCCGACCTCAACCAATAC+AGG | 0.421253 | 1_3:-58243413 | Msa0128490:intron |
| AACAGTCCTCACAATCCAAC+TGG | 0.421799 | 1_3:-58242112 | Msa0128490:CDS |
| TATATCATTAAGTTGCTTGC+GGG | 0.423030 | 1_3:-58240900 | Msa0128490:CDS |
| ATTTCGGCTGCAGCATGCTC+CGG | 0.423388 | 1_3:+58242054 | None:intergenic |
| GTCAAAGCAGCTTCCTGAAA+AGG | 0.425246 | 1_3:+58241362 | None:intergenic |
| GATAAGGAAGAAAGAAAGAA+AGG | 0.431917 | 1_3:-58243602 | Msa0128490:five_prime_UTR |
| GACGAACTTGAGACTATTGC+CGG | 0.437073 | 1_3:-58242073 | Msa0128490:CDS |
| CTGCAAGAGCGAGACAACTT+TGG | 0.441179 | 1_3:-58240568 | Msa0128490:CDS |
| AAGAGTATGACTTCGTCGCC+TGG | 0.450275 | 1_3:+58242920 | None:intergenic |
| ACTTAACTGGTTAACAATGA+AGG | 0.455067 | 1_3:-58240180 | Msa0128490:three_prime_UTR |
| GTCGGAATTAATGGCGGAAA+CGG | 0.459098 | 1_3:+58243428 | None:intergenic |
| CCTTGATATGTTTCATAGGA+AGG | 0.463722 | 1_3:+58242893 | None:intergenic |
| TTTCAGGAAGCTGCTTTGAC+CGG | 0.473448 | 1_3:-58241359 | Msa0128490:CDS |
| AAAGAAAGGAAAAGAATGGA+AGG | 0.476330 | 1_3:-58243588 | Msa0128490:exon |
| AAATTGGTAGAAAGAATAAT+GGG | 0.483839 | 1_3:-58240485 | Msa0128490:three_prime_UTR |
| TCTAAAACATTTAGTGTCAC+AGG | 0.483989 | 1_3:-58241584 | Msa0128490:intron |
| AAAAGTTAATACTAGAAGCC+GGG | 0.486367 | 1_3:-58240695 | Msa0128490:CDS |
| GAGTGCACATACATCAGAAA+GGG | 0.496352 | 1_3:+58240806 | None:intergenic |
| AAGGTGAGAGAGTTCTTGAA+TGG | 0.496498 | 1_3:+58243527 | None:intergenic |
| GTGGTGGCTGTTCCAGGACA+GGG | 0.501802 | 1_3:-58240672 | Msa0128490:CDS |
| TTCTTGCATTCCTGGAAATG+AGG | 0.505583 | 1_3:+58241631 | None:intergenic |
| ATGCTGCAGCCGAAATTGCC+TGG | 0.506689 | 1_3:-58242047 | Msa0128490:CDS |
| TCAGGGATTCAAAGTATTCA+GGG | 0.507354 | 1_3:+58241324 | None:intergenic |
| GCAGCTTCCTGAAAAGGAGC+TGG | 0.508572 | 1_3:+58241368 | None:intergenic |
| ATTAAGTTGCTTGCGGGAGT+GGG | 0.510487 | 1_3:-58240894 | Msa0128490:CDS |
| TTGATCTCTTACTCTTCTCA+GGG | 0.513924 | 1_3:+58241307 | None:intergenic |
| TCTGATAGCAGATGCAATAG+AGG | 0.525077 | 1_3:+58241421 | None:intergenic |
| GCAATACTTATGTCTGATTG+TGG | 0.526999 | 1_3:-58240307 | Msa0128490:three_prime_UTR |
| TCAGAAAGGGGACAATCCTC+AGG | 0.527257 | 1_3:+58240819 | None:intergenic |
| TAATTACACGTATAGTGATA+AGG | 0.530108 | 1_3:-58243618 | Msa0128490:five_prime_UTR |
| AGAGTGCACATACATCAGAA+AGG | 0.530239 | 1_3:+58240805 | None:intergenic |
| TTTAGATATTGACCCTGAAA+CGG | 0.531199 | 1_3:-58243257 | Msa0128490:CDS |
| CCTTCCTATGAAACATATCA+AGG | 0.534959 | 1_3:-58242893 | Msa0128490:CDS |
| CAAGGATGTGTTACCATGGC+TGG | 0.540558 | 1_3:-58242875 | Msa0128490:CDS |
| GGGACAATCCTCAGGAAGCT+CGG | 0.540948 | 1_3:+58240827 | None:intergenic |
| AATACTAGAAGCCGGGGTGG+TGG | 0.544325 | 1_3:-58240688 | Msa0128490:CDS |
| ATACTTCATCTGTTATAGCC+AGG | 0.547164 | 1_3:+58242029 | None:intergenic |
| CTTGATATGTTTCATAGGAA+GGG | 0.548122 | 1_3:+58242894 | None:intergenic |
| AAATAGCTACATCCGTTTCA+GGG | 0.548601 | 1_3:+58243245 | None:intergenic |
| CGGAGCCGCTATGAAGATTG+AGG | 0.552400 | 1_3:-58240459 | Msa0128490:three_prime_UTR |
| AGAGTATGACTTCGTCGCCT+GGG | 0.556087 | 1_3:+58242921 | None:intergenic |
| AAGATACAGTTTATACCTCA+GGG | 0.556260 | 1_3:-58240867 | Msa0128490:CDS |
| GGAGAGGAGCAGGGAAGTCA+GGG | 0.560494 | 1_3:+58243466 | None:intergenic |
| TACAGGAACACCACCAGCCA+TGG | 0.571149 | 1_3:+58242862 | None:intergenic |
| ATAGCAGATGCAATAGAGGC+TGG | 0.576693 | 1_3:+58241425 | None:intergenic |
| TTATATCATTAAGTTGCTTG+CGG | 0.576813 | 1_3:-58240901 | Msa0128490:CDS |
| CATTTCCAGGAATGCAAGAA+CGG | 0.578124 | 1_3:-58241628 | Msa0128490:CDS |
| AGGTGAGAGAGTTCTTGAAT+GGG | 0.582242 | 1_3:+58243528 | None:intergenic |
| CTTATTTGCCGAGCTTCCTG+AGG | 0.583945 | 1_3:-58240835 | Msa0128490:CDS |
| GAGCGAGACAACTTTGGCTG+CGG | 0.584036 | 1_3:-58240562 | Msa0128490:CDS |
| TTTAGGTTGGAGGATAGGAT+GGG | 0.584717 | 1_3:-58241456 | Msa0128490:intron |
| AAGCTCGGCAAATAAGAAGA+AGG | 0.587876 | 1_3:+58240842 | None:intergenic |
| GCAAGGTATATGTGAACACT+TGG | 0.590383 | 1_3:-58243305 | Msa0128490:CDS |
| CATTCCTGGAAATGAGGCAA+GGG | 0.592523 | 1_3:+58241637 | None:intergenic |
| TGTATTTCAAGGCACGTGCA+AGG | 0.600773 | 1_3:-58243322 | Msa0128490:intron |
| TTAACCAGTTAAGTTAACAA+TGG | 0.600829 | 1_3:+58240189 | None:intergenic |
| ACTACCAGAAGAGATACATC+AGG | 0.602541 | 1_3:-58240599 | Msa0128490:CDS |
| AATGCTATCAACCTCGCTGA+AGG | 0.607180 | 1_3:-58243492 | Msa0128490:CDS |
| GCATTCCTGGAAATGAGGCA+AGG | 0.607455 | 1_3:+58241636 | None:intergenic |
| AAACCTGTATTGGTTGAGGT+CGG | 0.611141 | 1_3:+58243410 | None:intergenic |
| AAAGTTAATACTAGAAGCCG+GGG | 0.622158 | 1_3:-58240694 | Msa0128490:CDS |
| GGAATTAATGGCGGAAACGG+CGG | 0.624454 | 1_3:+58243431 | None:intergenic |
| ACACTTGGCCAAAATGGTGA+AGG | 0.627453 | 1_3:-58243290 | Msa0128490:CDS |
| AGGGATTCAAAGTATTCAGG+GGG | 0.631570 | 1_3:+58241326 | None:intergenic |
| GTAGAAAGAATAATGGGTGA+CGG | 0.632289 | 1_3:-58240479 | Msa0128490:three_prime_UTR |
| TATTTGTTGTGGTCAAACTG+AGG | 0.648202 | 1_3:-58243227 | Msa0128490:CDS |
| TAGCATTGCATCTCTGAGCA+AGG | 0.649166 | 1_3:+58243508 | None:intergenic |
| TTTCAAACAGCAATTGACCC+AGG | 0.654184 | 1_3:-58242938 | Msa0128490:intron |
| GGATGTGTTACCATGGCTGG+TGG | 0.659608 | 1_3:-58242872 | Msa0128490:CDS |
| ACGGATGTAGCTATTTGTTG+TGG | 0.664846 | 1_3:-58243238 | Msa0128490:CDS |
| CAGGGATTCAAAGTATTCAG+GGG | 0.665264 | 1_3:+58241325 | None:intergenic |
| ATATCAAGGATGTGTTACCA+TGG | 0.670074 | 1_3:-58242879 | Msa0128490:CDS |
| TCCTGGAACAGCCACCACCC+CGG | 0.670992 | 1_3:+58240677 | None:intergenic |
| GTTGAGGTCGGAATTAATGG+CGG | 0.674905 | 1_3:+58243422 | None:intergenic |
| TATATCCTCAATCTTCATAG+CGG | 0.680533 | 1_3:+58240454 | None:intergenic |
| AGTGCACATACATCAGAAAG+GGG | 0.684588 | 1_3:+58240807 | None:intergenic |
| AAAATGGTGAAGGAAATGCA+TGG | 0.709380 | 1_3:-58243280 | Msa0128490:CDS |
| GTTAATACTAGAAGCCGGGG+TGG | 0.713030 | 1_3:-58240691 | Msa0128490:CDS |
| AATAAGAAGAAGGAACCCTG+AGG | 0.761532 | 1_3:+58240852 | None:intergenic |
| AGTCAGGGAAGCCTTCAGCG+AGG | 0.769775 | 1_3:+58243481 | None:intergenic |
| GGGATTCAAAGTATTCAGGG+GGG | 0.776633 | 1_3:+58241327 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATATTTCTATAGTTT+AGG | - | chr1_3:58241138-58241157 | Msa0128490:intron | 10.0% |
| !!! | TATTATATTTCTATAGTTTA+GGG | - | chr1_3:58241139-58241158 | Msa0128490:intron | 10.0% |
| !! | TTTATTCAATATTCAATAGT+AGG | - | chr1_3:58241175-58241194 | Msa0128490:intron | 15.0% |
| !! | AATTAAAATTGTTCTTAAAC+TGG | + | chr1_3:58243019-58243038 | None:intergenic | 15.0% |
| !! | TAAATTAAGAGATGAATATT+TGG | - | chr1_3:58243540-58243559 | Msa0128490:CDS | 15.0% |
| !! | CTATTATCTTAAATGATAAC+CGG | + | chr1_3:58240670-58240689 | None:intergenic | 20.0% |
| !! | AATAACTTCAACAGTTAAAA+GGG | + | chr1_3:58241269-58241288 | None:intergenic | 20.0% |
| !! | TTCTAACCTATTCAATATAA+TGG | + | chr1_3:58241440-58241459 | None:intergenic | 20.0% |
| !! | CAACAAAATTTATACTAAGT+GGG | + | chr1_3:58241560-58241579 | None:intergenic | 20.0% |
| !! | ACAACAAAATTTATACTAAG+TGG | + | chr1_3:58241561-58241580 | None:intergenic | 20.0% |
| !! | ATAAAAAGAATTATTGTCGT+CGG | + | chr1_3:58241897-58241916 | None:intergenic | 20.0% |
| !! | TATAGATAAATAGAAATTGC+TGG | - | chr1_3:58241914-58241933 | Msa0128490:intron | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr1_3:58242715-58242734 | Msa0128490:intron | 20.0% |
| !! | TAAATTGGTAGAAAGAATAA+TGG | - | chr1_3:58243285-58243304 | Msa0128490:CDS | 20.0% |
| !! | AAATTGGTAGAAAGAATAAT+GGG | - | chr1_3:58243286-58243305 | Msa0128490:CDS | 20.0% |
| !! | AATTAATGAAGTTTGTAATC+TGG | - | chr1_3:58243352-58243371 | Msa0128490:intron | 20.0% |
| ! | AAAGAAAGAAAGGAAAAGAA+TGG | - | chr1_3:58240179-58240198 | Msa0128490:three_prime_UTR | 25.0% |
| ! | TGTAAAGTAAAAACCTGTAT+TGG | + | chr1_3:58240374-58240393 | None:intergenic | 25.0% |
| ! | AGTAGATAGATTCTATGAAT+TGG | + | chr1_3:58240426-58240445 | None:intergenic | 25.0% |
| ! | TATCTACTCTTTGTATTTCA+AGG | - | chr1_3:58240438-58240457 | Msa0128490:three_prime_UTR | 25.0% |
| ! | TGATAAACAAAACTTGAGAT+TGG | + | chr1_3:58240949-58240968 | None:intergenic | 25.0% |
| !! | ATAGTTTATGGACTAAATTG+AGG | + | chr1_3:58241021-58241040 | None:intergenic | 25.0% |
| ! | TAATAATCCAGAGACTAAAT+AGG | + | chr1_3:58241052-58241071 | None:intergenic | 25.0% |
| ! | TAATCCATTAAATTAGTCCT+CGG | - | chr1_3:58241073-58241092 | Msa0128490:intron | 25.0% |
| ! | TATTGAATAAACCGTCAATT+TGG | + | chr1_3:58241166-58241185 | None:intergenic | 25.0% |
| ! | CAATAACTTCAACAGTTAAA+AGG | + | chr1_3:58241270-58241289 | None:intergenic | 25.0% |
| ! | AGTTAAGTTCACAAAAACAA+GGG | + | chr1_3:58241332-58241351 | None:intergenic | 25.0% |
| !! | ATTGATGTAAGCAATTTTCT+TGG | + | chr1_3:58241400-58241419 | None:intergenic | 25.0% |
| ! | CTAAAGCCATTATATTGAAT+AGG | - | chr1_3:58241431-58241450 | Msa0128490:CDS | 25.0% |
| !!! | TTTCTTTAACTGTTTTGGAT+TGG | - | chr1_3:58241503-58241522 | Msa0128490:intron | 25.0% |
| !! | CATCTCTTTCAAATATTTTG+AGG | + | chr1_3:58241595-58241614 | None:intergenic | 25.0% |
| ! | CTCAAAATATTTGAAAGAGA+TGG | - | chr1_3:58241593-58241612 | Msa0128490:CDS | 25.0% |
| !! | AAAACTTCACTGGAAATTTT+TGG | - | chr1_3:58242234-58242253 | Msa0128490:intron | 25.0% |
| !! | AAACTTCACTGGAAATTTTT+GGG | - | chr1_3:58242235-58242254 | Msa0128490:intron | 25.0% |
| !! | TTATTTTCATATGCTCTCTA+TGG | + | chr1_3:58242700-58242719 | None:intergenic | 25.0% |
| !! | TTATATCATTAAGTTGCTTG+CGG | - | chr1_3:58242870-58242889 | Msa0128490:CDS | 25.0% |
| ! | AAAAAGTTAATACTAGAAGC+CGG | - | chr1_3:58243075-58243094 | Msa0128490:intron | 25.0% |
| !! | TAGAAGTTTCATTTGATGAT+AGG | + | chr1_3:58243140-58243159 | None:intergenic | 25.0% |
| ! | AGTAACTAACTAGTTGTATT+TGG | - | chr1_3:58243407-58243426 | Msa0128490:intron | 25.0% |
| ! | TAAACCATTGTTAACTTAAC+TGG | - | chr1_3:58243578-58243597 | Msa0128490:exon | 25.0% |
| ! | TTAACCAGTTAAGTTAACAA+TGG | + | chr1_3:58243585-58243604 | None:intergenic | 25.0% |
| GATAAGGAAGAAAGAAAGAA+AGG | - | chr1_3:58240169-58240188 | Msa0128490:three_prime_UTR | 30.0% | |
| AAAGAAAGGAAAAGAATGGA+AGG | - | chr1_3:58240183-58240202 | Msa0128490:three_prime_UTR | 30.0% | |
| TTTAGATATTGACCCTGAAA+CGG | - | chr1_3:58240514-58240533 | Msa0128490:CDS | 30.0% | |
| TTGAATGTAAGAACATGTGT+TGG | - | chr1_3:58240696-58240715 | Msa0128490:CDS | 30.0% | |
| !!! | GTGCTTACAAGTTTTTTACA+CGG | - | chr1_3:58240735-58240754 | Msa0128490:intron | 30.0% |
| CTTGATATGTTTCATAGGAA+GGG | + | chr1_3:58240880-58240899 | None:intergenic | 30.0% | |
| ACATCCTTGATATGTTTCAT+AGG | + | chr1_3:58240885-58240904 | None:intergenic | 30.0% | |
| TAAACAAAACTTGAGATTGG+TGG | + | chr1_3:58240946-58240965 | None:intergenic | 30.0% | |
| ! | TTTAAAACTACGAGAGACAA+TGG | - | chr1_3:58241100-58241119 | Msa0128490:intron | 30.0% |
| ACAAGGGTTACATTAGATAA+AGG | + | chr1_3:58241316-58241335 | None:intergenic | 30.0% | |
| CAGTTAAGTTCACAAAAACA+AGG | + | chr1_3:58241333-58241352 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTTGTGAACTTAAC+TGG | - | chr1_3:58241331-58241350 | Msa0128490:CDS | 30.0% |
| !! | TATAATGGCTTTAGTTCTCT+CGG | + | chr1_3:58241425-58241444 | None:intergenic | 30.0% |
| CAGGGAAATATGAAATCTAT+TGG | + | chr1_3:58241483-58241502 | None:intergenic | 30.0% | |
| CCAAAACAGTTAAAGAAACA+GGG | + | chr1_3:58241501-58241520 | None:intergenic | 30.0% | |
| TCCAAAACAGTTAAAGAAAC+AGG | + | chr1_3:58241502-58241521 | None:intergenic | 30.0% | |
| ! | TTTGTGAAAACTTTTCCAGT+TGG | + | chr1_3:58241677-58241696 | None:intergenic | 30.0% |
| TTACAATCAATTGAAGTAGC+AGG | + | chr1_3:58241784-58241803 | None:intergenic | 30.0% | |
| !! | GTAATGTTTTTACCTTCTTC+TGG | - | chr1_3:58242058-58242077 | Msa0128490:CDS | 30.0% |
| !! | GACACTAAATGTTTTAGACA+AGG | + | chr1_3:58242185-58242204 | None:intergenic | 30.0% |
| ! | TCTAAAACATTTAGTGTCAC+AGG | - | chr1_3:58242187-58242206 | Msa0128490:intron | 30.0% |
| TAATGCTATTCATCTTAGCA+GGG | + | chr1_3:58242274-58242293 | None:intergenic | 30.0% | |
| TTAATGCTATTCATCTTAGC+AGG | + | chr1_3:58242275-58242294 | None:intergenic | 30.0% | |
| ! | GAGATCAAACATACACTTTT+AGG | - | chr1_3:58242479-58242498 | Msa0128490:intron | 30.0% |
| ! | CTATGTTTGTTACTTGTCTT+AGG | - | chr1_3:58242541-58242560 | Msa0128490:intron | 30.0% |
| AACTAAAATGTTCGTCCAAT+CGG | + | chr1_3:58242569-58242588 | None:intergenic | 30.0% | |
| AACTATTTCCACAACAAAAG+AGG | - | chr1_3:58242623-58242642 | Msa0128490:intron | 30.0% | |
| ! | CTTAATTTCCTCTTTTGTTG+TGG | + | chr1_3:58242634-58242653 | None:intergenic | 30.0% |
| GACAAATGGCTTATTTGAAT+TGG | + | chr1_3:58242809-58242828 | None:intergenic | 30.0% | |
| ! | TATATCATTAAGTTGCTTGC+GGG | - | chr1_3:58242871-58242890 | Msa0128490:CDS | 30.0% |
| TAAGATACAGTTTATACCTC+AGG | - | chr1_3:58242903-58242922 | Msa0128490:CDS | 30.0% | |
| AAGATACAGTTTATACCTCA+GGG | - | chr1_3:58242904-58242923 | Msa0128490:CDS | 30.0% | |
| AAAAGTTAATACTAGAAGCC+GGG | - | chr1_3:58243076-58243095 | Msa0128490:intron | 30.0% | |
| CATCTTGCGCTATATTAAAT+TGG | - | chr1_3:58243270-58243289 | Msa0128490:CDS | 30.0% | |
| TATATCCTCAATCTTCATAG+CGG | + | chr1_3:58243320-58243339 | None:intergenic | 30.0% | |
| ! | AGTTTTCACATAGTCTTCTT+TGG | + | chr1_3:58243387-58243406 | None:intergenic | 30.0% |
| ACTTAACTGGTTAACAATGA+AGG | - | chr1_3:58243591-58243610 | Msa0128490:exon | 30.0% | |
| !! | GTAAAAACCTGTATTGGTTG+AGG | + | chr1_3:58240368-58240387 | None:intergenic | 35.0% |
| ! | ATGCATTTCCTTCACCATTT+TGG | + | chr1_3:58240492-58240511 | None:intergenic | 35.0% |
| AAAATGGTGAAGGAAATGCA+TGG | - | chr1_3:58240491-58240510 | Msa0128490:exon | 35.0% | |
| AAATAGCTACATCCGTTTCA+GGG | + | chr1_3:58240529-58240548 | None:intergenic | 35.0% | |
| !! | TATTTGTTGTGGTCAAACTG+AGG | - | chr1_3:58240544-58240563 | Msa0128490:CDS | 35.0% |
| CCTTGATATGTTTCATAGGA+AGG | + | chr1_3:58240881-58240900 | None:intergenic | 35.0% | |
| CCTTCCTATGAAACATATCA+AGG | - | chr1_3:58240878-58240897 | Msa0128490:CDS | 35.0% | |
| ATATCAAGGATGTGTTACCA+TGG | - | chr1_3:58240892-58240911 | Msa0128490:CDS | 35.0% | |
| TAGTTTAGGGACCAAATTGA+CGG | - | chr1_3:58241152-58241171 | Msa0128490:intron | 35.0% | |
| ! | AAGCAATTTTCTTGGATCCA+AGG | + | chr1_3:58241392-58241411 | None:intergenic | 35.0% |
| !! | CCCTGTTTCTTTAACTGTTT+TGG | - | chr1_3:58241498-58241517 | Msa0128490:intron | 35.0% |
| ATACTTCATCTGTTATAGCC+AGG | + | chr1_3:58241745-58241764 | None:intergenic | 35.0% | |
| ! | CTGGAGCACATATATGTTTT+AGG | - | chr1_3:58241821-58241840 | Msa0128490:intron | 35.0% |
| ! | ACTGATTCATGCAAAAACTG+TGG | + | chr1_3:58241850-58241869 | None:intergenic | 35.0% |
| ! | AGGCAAGGGATATATGTTTT+TGG | + | chr1_3:58242123-58242142 | None:intergenic | 35.0% |
| TGCATGAAACAAAACTTCAC+TGG | - | chr1_3:58242224-58242243 | Msa0128490:intron | 35.0% | |
| GAATAGCATTAACTCACTGT+TGG | - | chr1_3:58242283-58242302 | Msa0128490:intron | 35.0% | |
| !! | ACTGTTGGTCTGTATCTTTT+AGG | - | chr1_3:58242298-58242317 | Msa0128490:intron | 35.0% |
| !! | TTGGTCTGTATCTTTTAGGT+TGG | - | chr1_3:58242302-58242321 | Msa0128490:intron | 35.0% |
| !!! | TATCTTTTAGGTTGGAGGAT+AGG | - | chr1_3:58242310-58242329 | Msa0128490:intron | 35.0% |
| ! | TCAGGGATTCAAAGTATTCA+GGG | + | chr1_3:58242450-58242469 | None:intergenic | 35.0% |
| TTGATCTCTTACTCTTCTCA+GGG | + | chr1_3:58242467-58242486 | None:intergenic | 35.0% | |
| TTTGATCTCTTACTCTTCTC+AGG | + | chr1_3:58242468-58242487 | None:intergenic | 35.0% | |
| ACTAAAATGTTCGTCCAATC+GGG | + | chr1_3:58242568-58242587 | None:intergenic | 35.0% | |
| ! | GAGCTTATGAAAACAGCTTT+TGG | + | chr1_3:58242746-58242765 | None:intergenic | 35.0% |
| GATAGAAACATCAGGACAAA+TGG | + | chr1_3:58242823-58242842 | None:intergenic | 35.0% | |
| AAAGTTAATACTAGAAGCCG+GGG | - | chr1_3:58243077-58243096 | Msa0128490:intron | 35.0% | |
| ! | AGAAAAACTGGGTAAGCTTT+TGG | - | chr1_3:58243236-58243255 | Msa0128490:CDS | 35.0% |
| !! | GTAGAAAGAATAATGGGTGA+CGG | - | chr1_3:58243292-58243311 | Msa0128490:CDS | 35.0% |
| GCAATACTTATGTCTGATTG+TGG | - | chr1_3:58243464-58243483 | Msa0128490:CDS | 35.0% | |
| GATTGTGGTTTAACATCAAC+TGG | - | chr1_3:58243479-58243498 | Msa0128490:CDS | 35.0% | |
| TGAAGGATCACTACTATAAC+TGG | - | chr1_3:58243608-58243627 | Msa0128490:five_prime_UTR | 35.0% | |
| AGGTGAGAGAGTTCTTGAAT+GGG | + | chr1_3:58240246-58240265 | None:intergenic | 40.0% | |
| AAGGTGAGAGAGTTCTTGAA+TGG | + | chr1_3:58240247-58240266 | None:intergenic | 40.0% | |
| TTGGTTGAGGTCGGAATTAA+TGG | + | chr1_3:58240355-58240374 | None:intergenic | 40.0% | |
| !! | AAACCTGTATTGGTTGAGGT+CGG | + | chr1_3:58240364-58240383 | None:intergenic | 40.0% |
| GCAAGGTATATGTGAACACT+TGG | - | chr1_3:58240466-58240485 | Msa0128490:three_prime_UTR | 40.0% | |
| ATGTGAACACTTGGCCAAAA+TGG | - | chr1_3:58240475-58240494 | Msa0128490:three_prime_UTR | 40.0% | |
| CAAATAGCTACATCCGTTTC+AGG | + | chr1_3:58240530-58240549 | None:intergenic | 40.0% | |
| ! | ACGGATGTAGCTATTTGTTG+TGG | - | chr1_3:58240533-58240552 | Msa0128490:CDS | 40.0% |
| TACCGACACTGATACATTAC+CGG | - | chr1_3:58240648-58240667 | Msa0128490:CDS | 40.0% | |
| AACCGGTAATGTATCAGTGT+CGG | + | chr1_3:58240653-58240672 | None:intergenic | 40.0% | |
| CTATGTAGTACCAACACTTC+AGG | + | chr1_3:58240773-58240792 | None:intergenic | 40.0% | |
| TTTCAAACAGCAATTGACCC+AGG | - | chr1_3:58240833-58240852 | Msa0128490:CDS | 40.0% | |
| TAGGAGACGGTGATAGTTTA+TGG | + | chr1_3:58241033-58241052 | None:intergenic | 40.0% | |
| TCCAGAGACTAAATAGGAGA+CGG | + | chr1_3:58241046-58241065 | None:intergenic | 40.0% | |
| GCAACCGAGGACTAATTTAA+TGG | + | chr1_3:58241080-58241099 | None:intergenic | 40.0% | |
| !!! | TCGTAGTTTTAAAGCAACCG+AGG | + | chr1_3:58241093-58241112 | None:intergenic | 40.0% |
| GAGAGACAATGGTAGTTCAA+GGG | - | chr1_3:58241111-58241130 | Msa0128490:intron | 40.0% | |
| ! | ACTTTTCCAGTTGGATTGTG+AGG | + | chr1_3:58241668-58241687 | None:intergenic | 40.0% |
| CTGTTATAGCCAGGCAATTT+CGG | + | chr1_3:58241736-58241755 | None:intergenic | 40.0% | |
| TTGTAAAGTGATTGCCCTTG+AGG | - | chr1_3:58241798-58241817 | Msa0128490:intron | 40.0% | |
| TCTTGTGCACAAGCAAATTC+AGG | + | chr1_3:58241979-58241998 | None:intergenic | 40.0% | |
| TTCTTGCATTCCTGGAAATG+AGG | + | chr1_3:58242143-58242162 | None:intergenic | 40.0% | |
| CATTTCCAGGAATGCAAGAA+CGG | - | chr1_3:58242143-58242162 | Msa0128490:intron | 40.0% | |
| !!! | GTCTGTATCTTTTAGGTTGG+AGG | - | chr1_3:58242305-58242324 | Msa0128490:intron | 40.0% |
| !!! | TTTTAGGTTGGAGGATAGGA+TGG | - | chr1_3:58242314-58242333 | Msa0128490:intron | 40.0% |
| !! | TTTAGGTTGGAGGATAGGAT+GGG | - | chr1_3:58242315-58242334 | Msa0128490:intron | 40.0% |
| TCTGATAGCAGATGCAATAG+AGG | + | chr1_3:58242353-58242372 | None:intergenic | 40.0% | |
| ! | AGGGATTCAAAGTATTCAGG+GGG | + | chr1_3:58242448-58242467 | None:intergenic | 40.0% |
| ! | CAGGGATTCAAAGTATTCAG+GGG | + | chr1_3:58242449-58242468 | None:intergenic | 40.0% |
| ! | CTCAGGGATTCAAAGTATTC+AGG | + | chr1_3:58242451-58242470 | None:intergenic | 40.0% |
| CTAAAATGTTCGTCCAATCG+GGG | + | chr1_3:58242567-58242586 | None:intergenic | 40.0% | |
| ATCTACTCGCACAAGTACTA+GGG | + | chr1_3:58242770-58242789 | None:intergenic | 40.0% | |
| TATCTACTCGCACAAGTACT+AGG | + | chr1_3:58242771-58242790 | None:intergenic | 40.0% | |
| CCTGCATAGATAGAAACATC+AGG | + | chr1_3:58242831-58242850 | None:intergenic | 40.0% | |
| ! | CCTGATGTTTCTATCTATGC+AGG | - | chr1_3:58242828-58242847 | Msa0128490:intron | 40.0% |
| AATAAGAAGAAGGAACCCTG+AGG | + | chr1_3:58242922-58242941 | None:intergenic | 40.0% | |
| AAGCTCGGCAAATAAGAAGA+AGG | + | chr1_3:58242932-58242951 | None:intergenic | 40.0% | |
| AGTGCACATACATCAGAAAG+GGG | + | chr1_3:58242967-58242986 | None:intergenic | 40.0% | |
| GAGTGCACATACATCAGAAA+GGG | + | chr1_3:58242968-58242987 | None:intergenic | 40.0% | |
| AGAGTGCACATACATCAGAA+AGG | + | chr1_3:58242969-58242988 | None:intergenic | 40.0% | |
| ACTACCAGAAGAGATACATC+AGG | - | chr1_3:58243172-58243191 | Msa0128490:intron | 40.0% | |
| CAAACCTGATGTATCTCTTC+TGG | + | chr1_3:58243179-58243198 | None:intergenic | 40.0% | |
| ! | GTAAGCTTTTGGATTGCGAA+GGG | - | chr1_3:58243247-58243266 | Msa0128490:CDS | 40.0% |
| ! | AAGTATTGCGTCGCTCTTAT+AGG | + | chr1_3:58243453-58243472 | None:intergenic | 40.0% |
| TAGCATTGCATCTCTGAGCA+AGG | + | chr1_3:58240266-58240285 | None:intergenic | 45.0% | |
| AATGCTATCAACCTCGCTGA+AGG | - | chr1_3:58240279-58240298 | Msa0128490:three_prime_UTR | 45.0% | |
| ! | TTTTGATGTGGAGAGGAGCA+GGG | + | chr1_3:58240317-58240336 | None:intergenic | 45.0% |
| ! | TTTTTGATGTGGAGAGGAGC+AGG | + | chr1_3:58240318-58240337 | None:intergenic | 45.0% |
| ! | AAACGGCGGCATTTTTGATG+TGG | + | chr1_3:58240329-58240348 | None:intergenic | 45.0% |
| ! | GTCGGAATTAATGGCGGAAA+CGG | + | chr1_3:58240346-58240365 | None:intergenic | 45.0% |
| GTTGAGGTCGGAATTAATGG+CGG | + | chr1_3:58240352-58240371 | None:intergenic | 45.0% | |
| ATTCCGACCTCAACCAATAC+AGG | - | chr1_3:58240358-58240377 | Msa0128490:three_prime_UTR | 45.0% | |
| TGTATTTCAAGGCACGTGCA+AGG | - | chr1_3:58240449-58240468 | Msa0128490:three_prime_UTR | 45.0% | |
| ACACTTGGCCAAAATGGTGA+AGG | - | chr1_3:58240481-58240500 | Msa0128490:three_prime_UTR | 45.0% | |
| !! | ATCAGTGTCGGTATTGTGCA+CGG | + | chr1_3:58240641-58240660 | None:intergenic | 45.0% |
| ACGTCTTCAACCTGAAGTGT+TGG | - | chr1_3:58240760-58240779 | Msa0128490:intron | 45.0% | |
| ACCGTCTCCTATTTAGTCTC+TGG | - | chr1_3:58241042-58241061 | Msa0128490:intron | 45.0% | |
| CGAGAGACAATGGTAGTTCA+AGG | - | chr1_3:58241110-58241129 | Msa0128490:intron | 45.0% | |
| AGGGTCATTGGATTGTACAC+AGG | + | chr1_3:58241233-58241252 | None:intergenic | 45.0% | |
| AAAGGGACAGCAAACATGCA+GGG | + | chr1_3:58241252-58241271 | None:intergenic | 45.0% | |
| AAAAGGGACAGCAAACATGC+AGG | + | chr1_3:58241253-58241272 | None:intergenic | 45.0% | |
| AACAGTCCTCACAATCCAAC+TGG | - | chr1_3:58241659-58241678 | Msa0128490:CDS | 45.0% | |
| GACGAACTTGAGACTATTGC+CGG | - | chr1_3:58241698-58241717 | Msa0128490:intron | 45.0% | |
| TATATGTGCTCCAGCCTCAA+GGG | + | chr1_3:58241815-58241834 | None:intergenic | 45.0% | |
| ATATATGTGCTCCAGCCTCA+AGG | + | chr1_3:58241816-58241835 | None:intergenic | 45.0% | |
| TGCACAAAGAGTCCAGAAGA+AGG | + | chr1_3:58242073-58242092 | None:intergenic | 45.0% | |
| TTCTTCTGGACTCTTTGTGC+AGG | - | chr1_3:58242072-58242091 | Msa0128490:CDS | 45.0% | |
| ATATCCCTTGCCTCATTTCC+AGG | - | chr1_3:58242130-58242149 | Msa0128490:intron | 45.0% | |
| CATTCCTGGAAATGAGGCAA+GGG | + | chr1_3:58242137-58242156 | None:intergenic | 45.0% | |
| ATAGTCCGTTCTTGCATTCC+TGG | + | chr1_3:58242151-58242170 | None:intergenic | 45.0% | |
| ATAGCAGATGCAATAGAGGC+TGG | + | chr1_3:58242349-58242368 | None:intergenic | 45.0% | |
| GTCAAAGCAGCTTCCTGAAA+AGG | + | chr1_3:58242412-58242431 | None:intergenic | 45.0% | |
| ! | TTTCAGGAAGCTGCTTTGAC+CGG | - | chr1_3:58242412-58242431 | Msa0128490:intron | 45.0% |
| ! | GGGATTCAAAGTATTCAGGG+GGG | + | chr1_3:58242447-58242466 | None:intergenic | 45.0% |
| ! | ATTAAGTTGCTTGCGGGAGT+GGG | - | chr1_3:58242877-58242896 | Msa0128490:CDS | 45.0% |
| GTGTGAAAAAATCCCTGTCC+TGG | + | chr1_3:58243114-58243133 | None:intergenic | 45.0% | |
| GCTGCGGTTTCAGAAAAACT+GGG | - | chr1_3:58243225-58243244 | Msa0128490:CDS | 45.0% | |
| ! | GGTAAGCTTTTGGATTGCGA+AGG | - | chr1_3:58243246-58243265 | Msa0128490:CDS | 45.0% |
| ! | GCGGCATTTTTGATGTGGAG+AGG | + | chr1_3:58240324-58240343 | None:intergenic | 50.0% |
| ! | GGAATTAATGGCGGAAACGG+CGG | + | chr1_3:58240343-58240362 | None:intergenic | 50.0% |
| !! | TCAGTGTCGGTATTGTGCAC+GGG | + | chr1_3:58240640-58240659 | None:intergenic | 50.0% |
| AGAGTATGACTTCGTCGCCT+GGG | + | chr1_3:58240853-58240872 | None:intergenic | 50.0% | |
| ! | AAGAGTATGACTTCGTCGCC+TGG | + | chr1_3:58240854-58240873 | None:intergenic | 50.0% |
| CAAGGATGTGTTACCATGGC+TGG | - | chr1_3:58240896-58240915 | Msa0128490:CDS | 50.0% | |
| TGGTGGCAATGCAAGCTTAC+AGG | + | chr1_3:58240929-58240948 | None:intergenic | 50.0% | |
| CAGCAAACATGCAGGGTCAT+TGG | + | chr1_3:58241245-58241264 | None:intergenic | 50.0% | |
| CTTGGATCCAAGGTCCACTT+AGG | + | chr1_3:58241382-58241401 | None:intergenic | 50.0% | |
| AAAGTGATTGCCCTTGAGGC+TGG | - | chr1_3:58241802-58241821 | Msa0128490:intron | 50.0% | |
| GCATTCCTGGAAATGAGGCA+AGG | + | chr1_3:58242138-58242157 | None:intergenic | 50.0% | |
| ! | TTCTGCTCCAGCTCCTTTTC+AGG | - | chr1_3:58242396-58242415 | Msa0128490:intron | 50.0% |
| TACTTGTCTTAGGCCCCGAT+TGG | - | chr1_3:58242551-58242570 | Msa0128490:intron | 50.0% | |
| ! | CATTAAGTTGCTTGCGGGAG+TGG | - | chr1_3:58242876-58242895 | Msa0128490:CDS | 50.0% |
| CTTATTTGCCGAGCTTCCTG+AGG | - | chr1_3:58242936-58242955 | Msa0128490:intron | 50.0% | |
| TCAGAAAGGGGACAATCCTC+AGG | + | chr1_3:58242955-58242974 | None:intergenic | 50.0% | |
| GTTAATACTAGAAGCCGGGG+TGG | - | chr1_3:58243080-58243099 | Msa0128490:intron | 50.0% | |
| CTGCAAGAGCGAGACAACTT+TGG | - | chr1_3:58243203-58243222 | Msa0128490:CDS | 50.0% | |
| GGCTGCGGTTTCAGAAAAAC+TGG | - | chr1_3:58243224-58243243 | Msa0128490:CDS | 50.0% | |
| !! | CAGTGTCGGTATTGTGCACG+GGG | + | chr1_3:58240639-58240658 | None:intergenic | 55.0% |
| GGATGTGTTACCATGGCTGG+TGG | - | chr1_3:58240899-58240918 | Msa0128490:CDS | 55.0% | |
| TACAGGAACACCACCAGCCA+TGG | + | chr1_3:58240912-58240931 | None:intergenic | 55.0% | |
| GATCCAAGGTCCACTTAGGC+GGG | + | chr1_3:58241378-58241397 | None:intergenic | 55.0% | |
| GGATCCAAGGTCCACTTAGG+CGG | + | chr1_3:58241379-58241398 | None:intergenic | 55.0% | |
| ATTTCGGCTGCAGCATGCTC+CGG | + | chr1_3:58241720-58241739 | None:intergenic | 55.0% | |
| ATGCTGCAGCCGAAATTGCC+TGG | - | chr1_3:58241724-58241743 | Msa0128490:intron | 55.0% | |
| GCAGCTTCCTGAAAAGGAGC+TGG | + | chr1_3:58242406-58242425 | None:intergenic | 55.0% | |
| TTCAGGGGGGCTTCTCAAAC+CGG | + | chr1_3:58242434-58242453 | None:intergenic | 55.0% | |
| GGGACAATCCTCAGGAAGCT+CGG | + | chr1_3:58242947-58242966 | None:intergenic | 55.0% | |
| AATACTAGAAGCCGGGGTGG+TGG | - | chr1_3:58243083-58243102 | Msa0128490:intron | 55.0% | |
| GAGCGAGACAACTTTGGCTG+CGG | - | chr1_3:58243209-58243228 | Msa0128490:CDS | 55.0% | |
| CGGAGCCGCTATGAAGATTG+AGG | - | chr1_3:58243312-58243331 | Msa0128490:CDS | 55.0% | |
| AGTCAGGGAAGCCTTCAGCG+AGG | + | chr1_3:58240293-58240312 | None:intergenic | 60.0% | |
| GGAGAGGAGCAGGGAAGTCA+GGG | + | chr1_3:58240308-58240327 | None:intergenic | 60.0% | |
| TGGAGAGGAGCAGGGAAGTC+AGG | + | chr1_3:58240309-58240328 | None:intergenic | 60.0% | |
| GTCCACTTAGGCGGGTCAAG+CGG | + | chr1_3:58241370-58241389 | None:intergenic | 60.0% | |
| TGACCCGCCTAAGTGGACCT+TGG | - | chr1_3:58241372-58241391 | Msa0128490:CDS | 60.0% | |
| GTGGTGGCTGTTCCAGGACA+GGG | - | chr1_3:58243099-58243118 | Msa0128490:intron | 60.0% | |
| ! | TGCCGCTTGACCCGCCTAAG+TGG | - | chr1_3:58241365-58241384 | Msa0128490:CDS | 65.0% |
| TCCTGGAACAGCCACCACCC+CGG | + | chr1_3:58243097-58243116 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCTGTTCCAGGAC+AGG | - | chr1_3:58243098-58243117 | Msa0128490:intron | 65.0% |
| ! | GCCGGGGTGGTGGCTGTTCC+AGG | - | chr1_3:58243093-58243112 | Msa0128490:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58240156 | 58243637 | 58240156 | ID=Msa0128490;Name=Msa0128490 |
| chr1_3 | mRNA | 58240156 | 58243637 | 58240156 | ID=Msa0128490-mRNA-1;Parent=Msa0128490;Name=Msa0128490-mRNA-1;_AED=0.34;_eAED=0.34;_QI=42|0.85|0.87|1|1|1|8|350|375 |
| chr1_3 | exon | 58240156 | 58240730 | 58240156 | ID=Msa0128490-mRNA-1:exon:18704;Parent=Msa0128490-mRNA-1 |
| chr1_3 | exon | 58240818 | 58240943 | 58240818 | ID=Msa0128490-mRNA-1:exon:18703;Parent=Msa0128490-mRNA-1 |
| chr1_3 | exon | 58241319 | 58241473 | 58241319 | ID=Msa0128490-mRNA-1:exon:18702;Parent=Msa0128490-mRNA-1 |
| chr1_3 | exon | 58241585 | 58241699 | 58241585 | ID=Msa0128490-mRNA-1:exon:18701;Parent=Msa0128490-mRNA-1 |
| chr1_3 | exon | 58242033 | 58242140 | 58242033 | ID=Msa0128490-mRNA-1:exon:18700;Parent=Msa0128490-mRNA-1 |
| chr1_3 | exon | 58242865 | 58242950 | 58242865 | ID=Msa0128490-mRNA-1:exon:18699;Parent=Msa0128490-mRNA-1 |
| chr1_3 | exon | 58243203 | 58243333 | 58243203 | ID=Msa0128490-mRNA-1:exon:18698;Parent=Msa0128490-mRNA-1 |
| chr1_3 | exon | 58243414 | 58243637 | 58243414 | ID=Msa0128490-mRNA-1:exon:18697;Parent=Msa0128490-mRNA-1 |
| chr1_3 | five_prime_UTR | 58243596 | 58243637 | 58243596 | ID=Msa0128490-mRNA-1:five_prime_utr;Parent=Msa0128490-mRNA-1 |
| chr1_3 | CDS | 58243414 | 58243595 | 58243414 | ID=Msa0128490-mRNA-1:cds;Parent=Msa0128490-mRNA-1 |
| chr1_3 | CDS | 58243203 | 58243333 | 58243203 | ID=Msa0128490-mRNA-1:cds;Parent=Msa0128490-mRNA-1 |
| chr1_3 | CDS | 58242865 | 58242950 | 58242865 | ID=Msa0128490-mRNA-1:cds;Parent=Msa0128490-mRNA-1 |
| chr1_3 | CDS | 58242033 | 58242140 | 58242033 | ID=Msa0128490-mRNA-1:cds;Parent=Msa0128490-mRNA-1 |
| chr1_3 | CDS | 58241585 | 58241699 | 58241585 | ID=Msa0128490-mRNA-1:cds;Parent=Msa0128490-mRNA-1 |
| chr1_3 | CDS | 58241319 | 58241473 | 58241319 | ID=Msa0128490-mRNA-1:cds;Parent=Msa0128490-mRNA-1 |
| chr1_3 | CDS | 58240818 | 58240943 | 58240818 | ID=Msa0128490-mRNA-1:cds;Parent=Msa0128490-mRNA-1 |
| chr1_3 | CDS | 58240506 | 58240730 | 58240506 | ID=Msa0128490-mRNA-1:cds;Parent=Msa0128490-mRNA-1 |
| chr1_3 | three_prime_UTR | 58240156 | 58240505 | 58240156 | ID=Msa0128490-mRNA-1:three_prime_utr;Parent=Msa0128490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
