Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030640 | sp|Q54KM6|KAT_DICDI | 32.870 | 432 | 207 | 10 | 4 | 365 | 15 | 433 | 2.04e-69 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009210 | Msa0030640 | 0.802958 | 4.381016e-49 | -8.615850e-47 |
| Msa0024070 | Msa0030640 | 0.814229 | 1.713557e-51 | -8.615850e-47 |
| Msa0030640 | Msa0045530 | 0.800735 | 1.253750e-48 | -8.615850e-47 |
| Msa0030640 | Msa0047400 | 0.807064 | 6.067206e-50 | -8.615850e-47 |
| Msa0030640 | Msa0058970 | 0.800388 | 1.475158e-48 | -8.615850e-47 |
| Msa0030640 | Msa0081300 | 0.803818 | 2.907431e-49 | -8.615850e-47 |
| Msa0030640 | Msa0082100 | 0.834492 | 2.905899e-56 | -8.615850e-47 |
| Msa0030640 | Msa0102290 | 0.800321 | 1.522350e-48 | -8.615850e-47 |
| Msa0030640 | Msa0128490 | 0.845235 | 4.607948e-59 | -8.615850e-47 |
| Msa0030640 | Msa0147070 | 0.820812 | 5.629472e-53 | -8.615850e-47 |
| Msa0030640 | Msa0174510 | 0.914134 | 2.736645e-84 | -8.615850e-47 |
| Msa0030640 | Msa0181380 | 0.807756 | 4.326361e-50 | -8.615850e-47 |
| Msa0030640 | Msa0266100 | 0.813681 | 2.263128e-51 | -8.615850e-47 |
| Msa0030640 | Msa0284980 | 0.801516 | 8.676601e-49 | -8.615850e-47 |
| Msa0030640 | Msa0288300 | 0.809210 | 2.118134e-50 | -8.615850e-47 |
| Msa0030640 | Msa0288350 | 0.829381 | 5.314181e-55 | -8.615850e-47 |
| Msa0030640 | Msa0288360 | 0.807286 | 5.442699e-50 | -8.615850e-47 |
| Msa0030640 | Msa0294170 | 0.800540 | 1.373959e-48 | -8.615850e-47 |
| Msa0030640 | Msa0371050 | 0.821221 | 4.530821e-53 | -8.615850e-47 |
| Msa0030640 | Msa0379450 | 0.830341 | 3.101205e-55 | -8.615850e-47 |
| Msa0030640 | Msa0383110 | 0.807938 | 3.958818e-50 | -8.615850e-47 |
| Msa0030640 | Msa0399180 | 0.804914 | 1.718581e-49 | -8.615850e-47 |
| Msa0030640 | Msa0404840 | 0.809566 | 1.776324e-50 | -8.615850e-47 |
| Msa0030640 | Msa0436310 | 0.807525 | 4.844330e-50 | -8.615850e-47 |
| Msa0030640 | Msa0436430 | 0.809954 | 1.465369e-50 | -8.615850e-47 |
| Msa0030640 | Msa0438990 | 0.800082 | 1.702538e-48 | -8.615850e-47 |
| Msa0030640 | Msa0463980 | 0.802670 | 5.025409e-49 | -8.615850e-47 |
| Msa0030640 | Msa0473010 | 0.800337 | 1.511095e-48 | -8.615850e-47 |
| Msa0030640 | Msa0475080 | 0.805813 | 1.113576e-49 | -8.615850e-47 |
| Msa0030640 | Msa0475130 | 0.815585 | 8.574139e-52 | -8.615850e-47 |
| Msa0030640 | Msa0485350 | 0.809714 | 1.650637e-50 | -8.615850e-47 |
| Msa0030640 | Msa0503120 | 0.814213 | 1.727377e-51 | -8.615850e-47 |
| Msa0030640 | Msa0506740 | 0.809405 | 1.923203e-50 | -8.615850e-47 |
| Msa0030640 | Msa0510540 | 0.803310 | 3.704989e-49 | -8.615850e-47 |
| Msa0030640 | Msa0521840 | 0.810866 | 9.316785e-51 | -8.615850e-47 |
| Msa0030640 | Msa0524570 | 0.800740 | 1.250615e-48 | -8.615850e-47 |
| Msa0030640 | Msa0583810 | 0.800263 | 1.564370e-48 | -8.615850e-47 |
| Msa0030640 | Msa0619870 | 0.804792 | 1.822117e-49 | -8.615850e-47 |
| Msa0030640 | Msa0621870 | 0.805665 | 1.196359e-49 | -8.615850e-47 |
| Msa0030640 | Msa0624700 | 0.800113 | 1.678039e-48 | -8.615850e-47 |
| Msa0030640 | Msa0649140 | 0.814818 | 1.269041e-51 | -8.615850e-47 |
| Msa0030640 | Msa0661490 | 0.804739 | 1.869509e-49 | -8.615850e-47 |
| Msa0030640 | Msa0695470 | 0.812095 | 5.036689e-51 | -8.615850e-47 |
| Msa0030640 | Msa0748890 | 0.816231 | 6.153326e-52 | -8.615850e-47 |
| Msa0030640 | Msa0752290 | 0.800065 | 1.716494e-48 | -8.615850e-47 |
| Msa0030640 | Msa0762860 | 0.809289 | 2.036577e-50 | -8.615850e-47 |
| Msa0030640 | Msa0762900 | 0.808774 | 2.625995e-50 | -8.615850e-47 |
| Msa0030640 | Msa0775970 | 0.802773 | 4.785366e-49 | -8.615850e-47 |
| Msa0030640 | Msa0879820 | 0.807304 | 5.395126e-50 | -8.615850e-47 |
| Msa0030640 | Msa0934800 | 0.810056 | 1.393286e-50 | -8.615850e-47 |
| Msa0030640 | Msa0967940 | 0.803146 | 4.006794e-49 | -8.615850e-47 |
| Msa0030640 | Msa1014530 | 0.803435 | 3.490242e-49 | -8.615850e-47 |
| Msa0030640 | Msa1033120 | 0.804912 | 1.720392e-49 | -8.615850e-47 |
| Msa0030640 | Msa1035090 | 0.810888 | 9.211420e-51 | -8.615850e-47 |
| Msa0030640 | Msa1074730 | 0.840707 | 7.392159e-58 | -8.615850e-47 |
| Msa0030640 | Msa1110350 | 0.844862 | 5.812783e-59 | -8.615850e-47 |
| Msa0030640 | Msa1149960 | 0.814307 | 1.646870e-51 | -8.615850e-47 |
| Msa0030640 | Msa1154020 | 0.848560 | 5.670441e-60 | -8.615850e-47 |
| Msa0030640 | Msa1177300 | 0.816059 | 6.720018e-52 | -8.615850e-47 |
| Msa0030640 | Msa1206500 | 0.817132 | 3.863498e-52 | -8.615850e-47 |
| Msa0030640 | Msa1208630 | 0.813542 | 2.428614e-51 | -8.615850e-47 |
| Msa0030640 | Msa1208750 | 0.806404 | 8.362466e-50 | -8.615850e-47 |
| Msa0030640 | Msa1250500 | 0.816206 | 6.232628e-52 | -8.615850e-47 |
| Msa0030640 | Msa1267560 | 0.805682 | 1.186534e-49 | -8.615850e-47 |
| Msa0030640 | Msa1269550 | 0.815225 | 1.030772e-51 | -8.615850e-47 |
| Msa0030640 | Msa1297500 | 0.830535 | 2.780187e-55 | -8.615850e-47 |
| Msa0030640 | Msa1297560 | 0.818685 | 1.723217e-52 | -8.615850e-47 |
| Msa0030640 | Msa1298180 | 0.831826 | 1.339330e-55 | -8.615850e-47 |
| Msa0030640 | Msa1336320 | 0.800280 | 1.552082e-48 | -8.615850e-47 |
| Msa0030640 | Msa1375120 | 0.827056 | 1.931131e-54 | -8.615850e-47 |
| Msa0030640 | Msa1376560 | 0.825661 | 4.150414e-54 | -8.615850e-47 |
| Msa0030640 | Msa1379930 | 0.808331 | 3.264837e-50 | -8.615850e-47 |
| Msa0030640 | Msa1411690 | 0.848681 | 5.250233e-60 | -8.615850e-47 |
| Msa0030640 | Msa1412750 | 0.837119 | 6.272619e-57 | -8.615850e-47 |
| Msa0030640 | Msa1426880 | 0.816130 | 6.480604e-52 | -8.615850e-47 |
| Msa0030640 | Msa1429390 | 0.802947 | 4.404477e-49 | -8.615850e-47 |
| Msa0030640 | Msa1438380 | 0.804573 | 2.024312e-49 | -8.615850e-47 |
| Msa0030640 | Msa1444750 | 0.818606 | 1.795801e-52 | -8.615850e-47 |
| Msa0030640 | Msa1455560 | 0.810260 | 1.259218e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030640 | MtrunA17_Chr1g0195061 | 90.323 | 403 | 11 | 1 | 1 | 375 | 1 | 403 | 0.0 | 742 |
| Msa0030640 | MtrunA17_Chr3g0114811 | 37.563 | 394 | 202 | 7 | 4 | 366 | 63 | 443 | 3.25e-86 | 268 |
| Msa0030640 | MtrunA17_Chr3g0114831 | 36.294 | 394 | 207 | 7 | 4 | 366 | 426 | 806 | 2.92e-78 | 256 |
| Msa0030640 | MtrunA17_Chr3g0114831 | 32.370 | 346 | 176 | 6 | 4 | 318 | 10 | 328 | 1.31e-51 | 184 |
| Msa0030640 | MtrunA17_Chr8g0382671 | 30.026 | 383 | 204 | 12 | 30 | 366 | 102 | 466 | 1.64e-35 | 135 |
| Msa0030640 | MtrunA17_Chr7g0267911 | 30.026 | 383 | 204 | 12 | 30 | 366 | 100 | 464 | 1.53e-34 | 132 |
| Msa0030640 | MtrunA17_Chr4g0004131 | 23.529 | 357 | 225 | 10 | 3 | 319 | 5 | 353 | 1.35e-20 | 92.4 |
| Msa0030640 | MtrunA17_Chr8g0360241 | 24.460 | 278 | 160 | 9 | 87 | 319 | 107 | 379 | 7.32e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030640 | AT1G77670.1 | 38.832 | 394 | 197 | 7 | 4 | 366 | 56 | 436 | 3.45e-89 | 276 |
| Msa0030640 | AT2G22250.1 | 29.124 | 388 | 203 | 11 | 30 | 367 | 55 | 420 | 8.12e-38 | 141 |
| Msa0030640 | AT2G22250.3 | 29.124 | 388 | 203 | 11 | 30 | 367 | 102 | 467 | 1.52e-37 | 141 |
| Msa0030640 | AT2G22250.2 | 29.124 | 388 | 203 | 11 | 30 | 367 | 102 | 467 | 1.52e-37 | 141 |
| Msa0030640 | AT1G80360.3 | 23.876 | 356 | 224 | 10 | 3 | 319 | 5 | 352 | 3.56e-18 | 85.9 |
| Msa0030640 | AT1G80360.2 | 23.876 | 356 | 224 | 10 | 3 | 319 | 5 | 352 | 3.56e-18 | 85.9 |
| Msa0030640 | AT1G80360.4 | 23.876 | 356 | 224 | 10 | 3 | 319 | 5 | 352 | 3.56e-18 | 85.9 |
| Msa0030640 | AT1G80360.1 | 23.876 | 356 | 224 | 10 | 3 | 319 | 5 | 352 | 3.56e-18 | 85.9 |
| Msa0030640 | AT5G36160.1 | 26.286 | 350 | 191 | 15 | 29 | 321 | 44 | 383 | 5.64e-18 | 85.5 |
| Msa0030640 | AT2G24850.1 | 25.688 | 218 | 134 | 10 | 137 | 332 | 196 | 407 | 6.34e-12 | 67.0 |
| Msa0030640 | AT4G28410.1 | 24.104 | 307 | 187 | 13 | 46 | 320 | 116 | 408 | 6.48e-12 | 67.0 |
| Msa0030640 | AT4G28410.2 | 24.116 | 311 | 192 | 13 | 43 | 322 | 113 | 410 | 7.25e-12 | 67.0 |
| Msa0030640 | AT4G23600.2 | 24.155 | 207 | 126 | 8 | 137 | 322 | 77 | 273 | 1.46e-11 | 65.5 |
| Msa0030640 | AT4G23600.1 | 24.155 | 207 | 126 | 8 | 137 | 322 | 181 | 377 | 1.55e-11 | 65.9 |
| Msa0030640 | AT4G23600.3 | 23.902 | 205 | 125 | 8 | 137 | 320 | 181 | 375 | 4.71e-11 | 64.3 |
Find 109 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATTTCCTTCACCATTT+TGG | 0.194310 | 1_1:+57032678 | None:intergenic |
| CAAATAGCTACATCCGTTTC+AGG | 0.219246 | 1_1:+57032640 | None:intergenic |
| TGCAGGATTATCAATCAAAA+AGG | 0.231038 | 1_1:-57030550 | Msa0030640:intron |
| TAAATTAAGAGATGAATATT+TGG | 0.232641 | 1_1:-57029850 | Msa0030640:three_prime_UTR |
| AATTAATAAAGTTTGTAATA+TGG | 0.233403 | 1_1:-57030039 | Msa0030640:three_prime_UTR |
| AGTAACTAACTAGTTGTATT+TGG | 0.238878 | 1_1:-57029983 | Msa0030640:three_prime_UTR |
| AAGTATTGCGTCGCTCTTAT+AGG | 0.244782 | 1_1:+57029940 | None:intergenic |
| CATCTTGCACTATATTAAAT+TGG | 0.247467 | 1_1:-57030125 | Msa0030640:exon |
| TAAACCATTGTTAACTTAAC+TGG | 0.258567 | 1_1:-57029813 | Msa0030640:three_prime_UTR |
| CTGTTATAGCCAGGCAATTT+CGG | 0.264498 | 1_1:+57031452 | None:intergenic |
| GATTGTGGTTTAACATTAAC+AGG | 0.268792 | 1_1:-57029911 | Msa0030640:three_prime_UTR |
| ATATCCCTTGCCTCATTTCC+AGG | 0.299458 | 1_1:-57031055 | Msa0030640:CDS |
| ATAGTCCGTTCTTGCATTCC+TGG | 0.309721 | 1_1:+57031037 | None:intergenic |
| GCCGGGGTGGTGGCTGTTCC+AGG | 0.313509 | 1_1:-57030302 | Msa0030640:CDS |
| TTGGTTGAGGTCGGAATTAA+TGG | 0.319771 | 1_1:+57032814 | None:intergenic |
| TAGAAGTTTCATTTGATGAT+AGG | 0.323856 | 1_1:+57030258 | None:intergenic |
| CAATGAAGGATCACTATAAC+TGG | 0.330147 | 1_1:-57029786 | Msa0030640:three_prime_UTR |
| CAAACCTGATGTATCTCTTC+TGG | 0.339394 | 1_1:+57030219 | None:intergenic |
| TGGAGAGGAGCAGGGAAGTC+AGG | 0.351842 | 1_1:+57032860 | None:intergenic |
| TAAATTGGAAGAAAGAATAA+TGG | 0.357716 | 1_1:-57030110 | Msa0030640:three_prime_UTR |
| CTTAGTGATTCAAAGTAGTC+AGG | 0.377117 | 1_1:+57030737 | None:intergenic |
| GGTGGTGGCTGTTCCAGGAC+AGG | 0.388445 | 1_1:-57030297 | Msa0030640:CDS |
| ATGTGAACACTTGGCCAAAA+TGG | 0.390216 | 1_1:-57032692 | Msa0030640:CDS |
| CATTAAGTTGCTTGCGGGAG+TGG | 0.395415 | 1_1:-57030519 | Msa0030640:CDS |
| TAAGATACAGTTTATACCTC+AGG | 0.403429 | 1_1:-57030492 | Msa0030640:CDS |
| ACATCCTTGATATGTTTCAT+AGG | 0.418151 | 1_1:+57032296 | None:intergenic |
| ATTCCGACCTCAACCAATAC+AGG | 0.421253 | 1_1:-57032808 | Msa0030640:intron |
| AACAGTCCTCACAATCCAAC+TGG | 0.421799 | 1_1:-57031526 | Msa0030640:CDS |
| TATATCATTAAGTTGCTTGC+GGG | 0.423030 | 1_1:-57030524 | Msa0030640:CDS |
| ATTTCGGCTGCAGCATGCTC+CGG | 0.423388 | 1_1:+57031468 | None:intergenic |
| GTCAAAGCAGCTTCCTGAAA+AGG | 0.433261 | 1_1:+57030776 | None:intergenic |
| AAAGAAAGGAAGGAAAAGAA+TGG | 0.436216 | 1_1:-57032987 | Msa0030640:exon |
| GACGAACTTGAGACTATTGC+CGG | 0.437073 | 1_1:-57031487 | Msa0030640:CDS |
| CTGCAAGAGCGAGACAACTT+TGG | 0.441179 | 1_1:-57030192 | Msa0030640:CDS |
| ACTTAACTGGTTAACAATGA+AGG | 0.455067 | 1_1:-57029800 | Msa0030640:three_prime_UTR |
| GATAAGGAAGAAAGAAAGGA+AGG | 0.457988 | 1_1:-57032997 | Msa0030640:five_prime_UTR |
| GTCGGAATTAATGGCGGAAA+CGG | 0.459098 | 1_1:+57032823 | None:intergenic |
| TAGTGATAAGGAAGAAAGAA+AGG | 0.459856 | 1_1:-57033001 | Msa0030640:five_prime_UTR |
| CCTTGATATGTTTCATAGGA+AGG | 0.463722 | 1_1:+57032300 | None:intergenic |
| AAATTGGAAGAAAGAATAAT+GGG | 0.466698 | 1_1:-57030109 | Msa0030640:three_prime_UTR |
| CGCTGACAGGGATAGTGATA+AGG | 0.475211 | 1_1:-57033013 | Msa0030640:five_prime_UTR |
| TCTAAAACATTTAGTGTCAC+AGG | 0.483989 | 1_1:-57030998 | Msa0030640:intron |
| AAAAGTTAATACTAGAAGCC+GGG | 0.486367 | 1_1:-57030319 | Msa0030640:CDS |
| AAAGGAAGGAAAAGAATGGA+AGG | 0.492008 | 1_1:-57032983 | Msa0030640:exon |
| GAGTGCACATACATCAGAAA+GGG | 0.496352 | 1_1:+57030430 | None:intergenic |
| AAGGTGAGAGAGTTCTTGAA+TGG | 0.496498 | 1_1:+57032922 | None:intergenic |
| GTGGTGGCTGTTCCAGGACA+GGG | 0.501802 | 1_1:-57030296 | Msa0030640:CDS |
| TTCTTGCATTCCTGGAAATG+AGG | 0.505583 | 1_1:+57031045 | None:intergenic |
| ATGCTGCAGCCGAAATTGCC+TGG | 0.506689 | 1_1:-57031461 | Msa0030640:CDS |
| GCAGCTTCCTGAAAAGGAGC+TGG | 0.508572 | 1_1:+57030782 | None:intergenic |
| ATTAAGTTGCTTGCGGGAGT+GGG | 0.510487 | 1_1:-57030518 | Msa0030640:CDS |
| TCTGATAGCAGATGCAATAG+AGG | 0.525077 | 1_1:+57030835 | None:intergenic |
| ATATAGTGCAAGATGCCCTT+CGG | 0.526423 | 1_1:+57030133 | None:intergenic |
| GCAATACTTATGTCTGATTG+TGG | 0.526999 | 1_1:-57029926 | Msa0030640:three_prime_UTR |
| TCAGAAAGGGGACAATCCTC+AGG | 0.527257 | 1_1:+57030443 | None:intergenic |
| AGAGTGCACATACATCAGAA+AGG | 0.530239 | 1_1:+57030429 | None:intergenic |
| TTTAGATATTGACCCTGAAA+CGG | 0.531199 | 1_1:-57032653 | Msa0030640:CDS |
| GTTTCAAACAGCAATTGACC+AGG | 0.534857 | 1_1:-57032346 | Msa0030640:intron |
| CCTTCCTATGAAACATATCA+AGG | 0.534959 | 1_1:-57032300 | Msa0030640:CDS |
| TTAGTGATTCAAAGTAGTCA+GGG | 0.539932 | 1_1:+57030738 | None:intergenic |
| CAAGGATGTGTTACCATGGC+TGG | 0.540558 | 1_1:-57032282 | Msa0030640:CDS |
| GGGACAATCCTCAGGAAGCT+CGG | 0.540948 | 1_1:+57030451 | None:intergenic |
| TGCGAGCTTCGCCGCTGACA+GGG | 0.544127 | 1_1:-57033025 | None:intergenic |
| AATACTAGAAGCCGGGGTGG+TGG | 0.544325 | 1_1:-57030312 | Msa0030640:CDS |
| ATACTTCATCTGTTATAGCC+AGG | 0.547164 | 1_1:+57031443 | None:intergenic |
| CTTGATATGTTTCATAGGAA+GGG | 0.548122 | 1_1:+57032301 | None:intergenic |
| AAATAGCTACATCCGTTTCA+GGG | 0.548601 | 1_1:+57032641 | None:intergenic |
| CGGAGCCGCTATGAAGATTG+AGG | 0.552400 | 1_1:-57030083 | Msa0030640:three_prime_UTR |
| AAGATACAGTTTATACCTCA+GGG | 0.556260 | 1_1:-57030491 | Msa0030640:CDS |
| GGAGAGGAGCAGGGAAGTCA+GGG | 0.560494 | 1_1:+57032861 | None:intergenic |
| TACAGGAACACCACCAGCCA+TGG | 0.571149 | 1_1:+57032269 | None:intergenic |
| ATAGCAGATGCAATAGAGGC+TGG | 0.576693 | 1_1:+57030839 | None:intergenic |
| TTATATCATTAAGTTGCTTG+CGG | 0.576813 | 1_1:-57030525 | Msa0030640:CDS |
| CATTTCCAGGAATGCAAGAA+CGG | 0.578124 | 1_1:-57031042 | Msa0030640:CDS |
| AGGTGAGAGAGTTCTTGAAT+GGG | 0.582242 | 1_1:+57032923 | None:intergenic |
| CTTATTTGCCGAGCTTCCTG+AGG | 0.583945 | 1_1:-57030459 | Msa0030640:CDS |
| GAGCGAGACAACTTTGGCTG+CGG | 0.584036 | 1_1:-57030186 | Msa0030640:CDS |
| TTTAGGTTGGAGGATAGGAT+GGG | 0.584717 | 1_1:-57030870 | Msa0030640:intron |
| AAGCTCGGCAAATAAGAAGA+AGG | 0.587876 | 1_1:+57030466 | None:intergenic |
| GCAAGGTATATGTGAACACT+TGG | 0.590383 | 1_1:-57032701 | Msa0030640:CDS |
| CATTCCTGGAAATGAGGCAA+GGG | 0.592523 | 1_1:+57031051 | None:intergenic |
| TGTATTTCAAGGCACGTGCA+AGG | 0.600773 | 1_1:-57032718 | Msa0030640:intron |
| TTAACCAGTTAAGTTAACAA+TGG | 0.600829 | 1_1:+57029809 | None:intergenic |
| ACTACCAGAAGAGATACATC+AGG | 0.602541 | 1_1:-57030223 | Msa0030640:CDS |
| AATGCTATCAACCTCGCTGA+AGG | 0.607180 | 1_1:-57032887 | Msa0030640:CDS |
| GCATTCCTGGAAATGAGGCA+AGG | 0.607455 | 1_1:+57031050 | None:intergenic |
| AAAGTTAATACTAGAAGCCG+GGG | 0.622158 | 1_1:-57030318 | Msa0030640:CDS |
| GGAATTAATGGCGGAAACGG+CGG | 0.624454 | 1_1:+57032826 | None:intergenic |
| ACACTTGGCCAAAATGGTGA+AGG | 0.627453 | 1_1:-57032686 | Msa0030640:CDS |
| AGAGTATGACTTCGTCACCC+TGG | 0.631880 | 1_1:+57032328 | None:intergenic |
| AAACCTGTATTGGTTGAGGT+CGG | 0.632186 | 1_1:+57032805 | None:intergenic |
| GAAGAAAGAATAATGGGTGA+CGG | 0.638003 | 1_1:-57030103 | Msa0030640:three_prime_UTR |
| TATTTGTTGTGGTCAAACTG+AGG | 0.648202 | 1_1:-57032623 | Msa0030640:CDS |
| TAGCATTGCATCTCTGAGCA+AGG | 0.649166 | 1_1:+57032903 | None:intergenic |
| AGTGATTCAAAGTAGTCAGG+GGG | 0.650203 | 1_1:+57030740 | None:intergenic |
| TAGTGATTCAAAGTAGTCAG+GGG | 0.658344 | 1_1:+57030739 | None:intergenic |
| GGATGTGTTACCATGGCTGG+TGG | 0.659608 | 1_1:-57032279 | Msa0030640:CDS |
| ACGGATGTAGCTATTTGTTG+TGG | 0.664846 | 1_1:-57032634 | Msa0030640:CDS |
| ATATCAAGGATGTGTTACCA+TGG | 0.670074 | 1_1:-57032286 | Msa0030640:CDS |
| TCCTGGAACAGCCACCACCC+CGG | 0.670992 | 1_1:+57030301 | None:intergenic |
| GTTGAGGTCGGAATTAATGG+CGG | 0.674905 | 1_1:+57032817 | None:intergenic |
| TTTCAAACAGCAATTGACCA+GGG | 0.684472 | 1_1:-57032345 | Msa0030640:intron |
| AGTGCACATACATCAGAAAG+GGG | 0.684588 | 1_1:+57030431 | None:intergenic |
| TGTATCCTCAATCTTCATAG+CGG | 0.692403 | 1_1:+57030078 | None:intergenic |
| AAAATGGTGAAGGAAATGCA+TGG | 0.709380 | 1_1:-57032676 | Msa0030640:CDS |
| GTTAATACTAGAAGCCGGGG+TGG | 0.713030 | 1_1:-57030315 | Msa0030640:CDS |
| GTGATTCAAAGTAGTCAGGG+GGG | 0.719527 | 1_1:+57030741 | None:intergenic |
| AATAAGAAGAAGGAACCCTG+AGG | 0.761532 | 1_1:+57030476 | None:intergenic |
| AGTCAGGGAAGCCTTCAGCG+AGG | 0.769775 | 1_1:+57032876 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATATTTCTATAGTTT+AGG | - | chr1_1:57030749-57030768 | Msa0030640:CDS | 10.0% |
| !!! | TATTATATTTCTATAGTTTA+GGG | - | chr1_1:57030750-57030769 | Msa0030640:CDS | 10.0% |
| !! | AATTAATAAAGTTTGTAATA+TGG | - | chr1_1:57032750-57032769 | Msa0030640:intron | 10.0% |
| !! | TTTATTCAATATTCAATAGT+AGG | - | chr1_1:57030786-57030805 | Msa0030640:CDS | 15.0% |
| !! | TAAATTAAGAGATGAATATT+TGG | - | chr1_1:57032939-57032958 | Msa0030640:CDS | 15.0% |
| !! | TAAACTGATAAACAAAACTT+GGG | + | chr1_1:57030565-57030584 | None:intergenic | 20.0% |
| !! | TTAAACTGATAAACAAAACT+TGG | + | chr1_1:57030566-57030585 | None:intergenic | 20.0% |
| !! | AATAACTTCAACAGTTAAAA+GGG | + | chr1_1:57030880-57030899 | None:intergenic | 20.0% |
| !! | TTCTAACCTATTCAATATAA+TGG | + | chr1_1:57031051-57031070 | None:intergenic | 20.0% |
| !! | CAACAAAATTTATACTAAGT+GGG | + | chr1_1:57031171-57031190 | None:intergenic | 20.0% |
| !! | ACAACAAAATTTATACTAAG+TGG | + | chr1_1:57031172-57031191 | None:intergenic | 20.0% |
| !!! | GTTCTTATTAGCTTTTAATT+TGG | - | chr1_1:57031540-57031559 | Msa0030640:intron | 20.0% |
| !! | AATTAAAATTGTGCTTAAAC+TGG | + | chr1_1:57032413-57032432 | None:intergenic | 20.0% |
| !! | TAAATTGGAAGAAAGAATAA+TGG | - | chr1_1:57032679-57032698 | Msa0030640:CDS | 20.0% |
| !! | AAATTGGAAGAAAGAATAAT+GGG | - | chr1_1:57032680-57032699 | Msa0030640:CDS | 20.0% |
| ! | AGTAGATAGATTCTATGAAT+TGG | + | chr1_1:57030048-57030067 | None:intergenic | 25.0% |
| ! | TATCTACTCTTTGTATTTCA+AGG | - | chr1_1:57030060-57030079 | Msa0030640:three_prime_UTR | 25.0% |
| ! | TTTAATGTAAGAACATGTGT+TGG | - | chr1_1:57030313-57030332 | Msa0030640:CDS | 25.0% |
| !! | ATAGTTTATGGACTAAATTG+AGG | + | chr1_1:57030632-57030651 | None:intergenic | 25.0% |
| ! | TAATAATCCAGAGACTAAAT+AGG | + | chr1_1:57030663-57030682 | None:intergenic | 25.0% |
| ! | TAATCCATTAAATTAGTCCT+CGG | - | chr1_1:57030684-57030703 | Msa0030640:intron | 25.0% |
| ! | TATTGAATAAACCGTCAATT+TGG | + | chr1_1:57030777-57030796 | None:intergenic | 25.0% |
| ! | CAATAACTTCAACAGTTAAA+AGG | + | chr1_1:57030881-57030900 | None:intergenic | 25.0% |
| ! | AGTTAAGTTCACAAAAACAA+GGG | + | chr1_1:57030943-57030962 | None:intergenic | 25.0% |
| !! | ATTGATGTAAGCAATTTTCT+TGG | + | chr1_1:57031011-57031030 | None:intergenic | 25.0% |
| ! | CTAAAGCCATTATATTGAAT+AGG | - | chr1_1:57031042-57031061 | Msa0030640:CDS | 25.0% |
| !!! | TTTCTTTAACTGTTTTGGAT+TGG | - | chr1_1:57031114-57031133 | Msa0030640:intron | 25.0% |
| !! | CATCTCTTTCAAATATTTTG+AGG | + | chr1_1:57031199-57031218 | None:intergenic | 25.0% |
| ! | CTCAAAATATTTGAAAGAGA+TGG | - | chr1_1:57031197-57031216 | Msa0030640:intron | 25.0% |
| ! | CATAGATAAATAGAAATTGC+TGG | - | chr1_1:57031518-57031537 | Msa0030640:CDS | 25.0% |
| !! | AAAACTTCACTGGAAATTTT+TGG | - | chr1_1:57031838-57031857 | Msa0030640:intron | 25.0% |
| !! | AAACTTCACTGGAAATTTTT+GGG | - | chr1_1:57031839-57031858 | Msa0030640:intron | 25.0% |
| !! | GAGATCAAACATACAATTTT+AGG | - | chr1_1:57032083-57032102 | Msa0030640:intron | 25.0% |
| !!! | TAAACTATTTCTATCTTTGC+AGG | - | chr1_1:57032222-57032241 | Msa0030640:intron | 25.0% |
| !! | TTATATCATTAAGTTGCTTG+CGG | - | chr1_1:57032264-57032283 | Msa0030640:intron | 25.0% |
| ! | AAAAAGTTAATACTAGAAGC+CGG | - | chr1_1:57032469-57032488 | Msa0030640:intron | 25.0% |
| !! | TAGAAGTTTCATTTGATGAT+AGG | + | chr1_1:57032534-57032553 | None:intergenic | 25.0% |
| ! | CATCTTGCACTATATTAAAT+TGG | - | chr1_1:57032664-57032683 | Msa0030640:CDS | 25.0% |
| ! | AGTAACTAACTAGTTGTATT+TGG | - | chr1_1:57032806-57032825 | Msa0030640:intron | 25.0% |
| ! | TAAACCATTGTTAACTTAAC+TGG | - | chr1_1:57032976-57032995 | Msa0030640:exon | 25.0% |
| ! | TTAACCAGTTAAGTTAACAA+TGG | + | chr1_1:57032983-57033002 | None:intergenic | 25.0% |
| TAGTGATAAGGAAGAAAGAA+AGG | - | chr1_1:57029788-57029807 | Msa0030640:three_prime_UTR | 30.0% | |
| AAAGAAAGGAAGGAAAAGAA+TGG | - | chr1_1:57029802-57029821 | Msa0030640:three_prime_UTR | 30.0% | |
| GTGTAAAGAAAAACCTGTAT+TGG | + | chr1_1:57029997-57030016 | None:intergenic | 30.0% | |
| TTTAGATATTGACCCTGAAA+CGG | - | chr1_1:57030136-57030155 | Msa0030640:CDS | 30.0% | |
| CTATTATCTTAAACGATTGC+TGG | + | chr1_1:57030287-57030306 | None:intergenic | 30.0% | |
| !!! | GTGCTTACAAGTTTTTTACA+CGG | - | chr1_1:57030352-57030371 | Msa0030640:intron | 30.0% |
| CTTGATATGTTTCATAGGAA+GGG | + | chr1_1:57030491-57030510 | None:intergenic | 30.0% | |
| ACATCCTTGATATGTTTCAT+AGG | + | chr1_1:57030496-57030515 | None:intergenic | 30.0% | |
| TGATAAACAAAACTTGGGAT+TGG | + | chr1_1:57030560-57030579 | None:intergenic | 30.0% | |
| ACAAGGGTTACATTAGATAA+AGG | + | chr1_1:57030927-57030946 | None:intergenic | 30.0% | |
| CAGTTAAGTTCACAAAAACA+AGG | + | chr1_1:57030944-57030963 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTTGTGAACTTAAC+TGG | - | chr1_1:57030942-57030961 | Msa0030640:intron | 30.0% |
| !! | TATAATGGCTTTAGTTCTCT+CGG | + | chr1_1:57031036-57031055 | None:intergenic | 30.0% |
| CAGGGAAATATGAAATCTAT+TGG | + | chr1_1:57031094-57031113 | None:intergenic | 30.0% | |
| CCAAAACAGTTAAAGAAACA+GGG | + | chr1_1:57031112-57031131 | None:intergenic | 30.0% | |
| TCCAAAACAGTTAAAGAAAC+AGG | + | chr1_1:57031113-57031132 | None:intergenic | 30.0% | |
| ! | TTTGTGAAAACTTTTCCAGT+TGG | + | chr1_1:57031281-57031300 | None:intergenic | 30.0% |
| TTACAATCAATTGAAGTAGC+AGG | + | chr1_1:57031388-57031407 | None:intergenic | 30.0% | |
| ATGAAAAGAATTACTGTCGT+CGG | + | chr1_1:57031501-57031520 | None:intergenic | 30.0% | |
| !! | GTAATGTTTTTACCTTCTTC+TGG | - | chr1_1:57031662-57031681 | Msa0030640:intron | 30.0% |
| !! | GACACTAAATGTTTTAGACA+AGG | + | chr1_1:57031789-57031808 | None:intergenic | 30.0% |
| ! | TCTAAAACATTTAGTGTCAC+AGG | - | chr1_1:57031791-57031810 | Msa0030640:intron | 30.0% |
| TAATGCTATTCATCTTAGCA+AGG | + | chr1_1:57031878-57031897 | None:intergenic | 30.0% | |
| TTAGTGATTCAAAGTAGTCA+GGG | + | chr1_1:57032054-57032073 | None:intergenic | 30.0% | |
| ACTAAGTTGTTTGTCCAATT+GGG | + | chr1_1:57032173-57032192 | None:intergenic | 30.0% | |
| TGCAGGATTATCAATCAAAA+AGG | - | chr1_1:57032239-57032258 | Msa0030640:intron | 30.0% | |
| GCAGGATTATCAATCAAAAA+GGG | - | chr1_1:57032240-57032259 | Msa0030640:intron | 30.0% | |
| ! | TATATCATTAAGTTGCTTGC+GGG | - | chr1_1:57032265-57032284 | Msa0030640:intron | 30.0% |
| TAAGATACAGTTTATACCTC+AGG | - | chr1_1:57032297-57032316 | Msa0030640:CDS | 30.0% | |
| AAGATACAGTTTATACCTCA+GGG | - | chr1_1:57032298-57032317 | Msa0030640:CDS | 30.0% | |
| AAAAGTTAATACTAGAAGCC+GGG | - | chr1_1:57032470-57032489 | Msa0030640:intron | 30.0% | |
| GATTGTGGTTTAACATTAAC+AGG | - | chr1_1:57032878-57032897 | Msa0030640:CDS | 30.0% | |
| ACTTAACTGGTTAACAATGA+AGG | - | chr1_1:57032989-57033008 | Msa0030640:exon | 30.0% | |
| GATAAGGAAGAAAGAAAGGA+AGG | - | chr1_1:57029792-57029811 | Msa0030640:three_prime_UTR | 35.0% | |
| AAAGGAAGGAAAAGAATGGA+AGG | - | chr1_1:57029806-57029825 | Msa0030640:three_prime_UTR | 35.0% | |
| !! | AGAAAAACCTGTATTGGTTG+AGG | + | chr1_1:57029991-57030010 | None:intergenic | 35.0% |
| ! | ATGCATTTCCTTCACCATTT+TGG | + | chr1_1:57030114-57030133 | None:intergenic | 35.0% |
| AAAATGGTGAAGGAAATGCA+TGG | - | chr1_1:57030113-57030132 | Msa0030640:exon | 35.0% | |
| AAATAGCTACATCCGTTTCA+GGG | + | chr1_1:57030151-57030170 | None:intergenic | 35.0% | |
| !! | TATTTGTTGTGGTCAAACTG+AGG | - | chr1_1:57030166-57030185 | Msa0030640:CDS | 35.0% |
| TTTCAAACAGCAATTGACCA+GGG | - | chr1_1:57030444-57030463 | Msa0030640:CDS | 35.0% | |
| CCTTGATATGTTTCATAGGA+AGG | + | chr1_1:57030492-57030511 | None:intergenic | 35.0% | |
| CCTTCCTATGAAACATATCA+AGG | - | chr1_1:57030489-57030508 | Msa0030640:CDS | 35.0% | |
| ATATCAAGGATGTGTTACCA+TGG | - | chr1_1:57030503-57030522 | Msa0030640:CDS | 35.0% | |
| TAAACAAAACTTGGGATTGG+TGG | + | chr1_1:57030557-57030576 | None:intergenic | 35.0% | |
| ! | TTTAAAACTACGGGAGACAA+TGG | - | chr1_1:57030711-57030730 | Msa0030640:intron | 35.0% |
| TAGTTTAGGGACCAAATTGA+CGG | - | chr1_1:57030763-57030782 | Msa0030640:CDS | 35.0% | |
| ! | AAGCAATTTTCTTGGATCCA+AGG | + | chr1_1:57031003-57031022 | None:intergenic | 35.0% |
| !! | CCCTGTTTCTTTAACTGTTT+TGG | - | chr1_1:57031109-57031128 | Msa0030640:intron | 35.0% |
| ATACTTCATCTGTTATAGCC+AGG | + | chr1_1:57031349-57031368 | None:intergenic | 35.0% | |
| ! | CTGGAGCACATATATGTTTT+AGG | - | chr1_1:57031425-57031444 | Msa0030640:intron | 35.0% |
| ! | ACTGATTCATGCAAAAACTG+TGG | + | chr1_1:57031454-57031473 | None:intergenic | 35.0% |
| ! | AGGCAAGGGATATATGTTTT+TGG | + | chr1_1:57031727-57031746 | None:intergenic | 35.0% |
| TGCATGAAACAAAACTTCAC+TGG | - | chr1_1:57031828-57031847 | Msa0030640:intron | 35.0% | |
| GAATAGCATTAACTCACTGT+TGG | - | chr1_1:57031887-57031906 | Msa0030640:intron | 35.0% | |
| !! | ACTGTTGGTCTGTATCTTTT+AGG | - | chr1_1:57031902-57031921 | Msa0030640:intron | 35.0% |
| !! | TTGGTCTGTATCTTTTAGGT+TGG | - | chr1_1:57031906-57031925 | Msa0030640:intron | 35.0% |
| !!! | TATCTTTTAGGTTGGAGGAT+AGG | - | chr1_1:57031914-57031933 | Msa0030640:intron | 35.0% |
| TAGTGATTCAAAGTAGTCAG+GGG | + | chr1_1:57032053-57032072 | None:intergenic | 35.0% | |
| CTTAGTGATTCAAAGTAGTC+AGG | + | chr1_1:57032055-57032074 | None:intergenic | 35.0% | |
| CTAAGTTGTTTGTCCAATTG+GGG | + | chr1_1:57032172-57032191 | None:intergenic | 35.0% | |
| CACTAAGTTGTTTGTCCAAT+TGG | + | chr1_1:57032174-57032193 | None:intergenic | 35.0% | |
| AAAGTTAATACTAGAAGCCG+GGG | - | chr1_1:57032471-57032490 | Msa0030640:intron | 35.0% | |
| ! | AGAAAAACTGGGTAAGCTTT+TGG | - | chr1_1:57032630-57032649 | Msa0030640:CDS | 35.0% |
| !! | GAAGAAAGAATAATGGGTGA+CGG | - | chr1_1:57032686-57032705 | Msa0030640:CDS | 35.0% |
| TGTATCCTCAATCTTCATAG+CGG | + | chr1_1:57032714-57032733 | None:intergenic | 35.0% | |
| ! | GTTTTCACATAGTCTTCTCT+TGG | + | chr1_1:57032785-57032804 | None:intergenic | 35.0% |
| GCAATACTTATGTCTGATTG+TGG | - | chr1_1:57032863-57032882 | Msa0030640:CDS | 35.0% | |
| CAATGAAGGATCACTATAAC+TGG | - | chr1_1:57033003-57033022 | Msa0030640:five_prime_UTR | 35.0% | |
| AGGTGAGAGAGTTCTTGAAT+GGG | + | chr1_1:57029869-57029888 | None:intergenic | 40.0% | |
| AAGGTGAGAGAGTTCTTGAA+TGG | + | chr1_1:57029870-57029889 | None:intergenic | 40.0% | |
| TTGGTTGAGGTCGGAATTAA+TGG | + | chr1_1:57029978-57029997 | None:intergenic | 40.0% | |
| !! | AAACCTGTATTGGTTGAGGT+CGG | + | chr1_1:57029987-57030006 | None:intergenic | 40.0% |
| GCAAGGTATATGTGAACACT+TGG | - | chr1_1:57030088-57030107 | Msa0030640:three_prime_UTR | 40.0% | |
| ATGTGAACACTTGGCCAAAA+TGG | - | chr1_1:57030097-57030116 | Msa0030640:three_prime_UTR | 40.0% | |
| CAAATAGCTACATCCGTTTC+AGG | + | chr1_1:57030152-57030171 | None:intergenic | 40.0% | |
| ! | ACGGATGTAGCTATTTGTTG+TGG | - | chr1_1:57030155-57030174 | Msa0030640:CDS | 40.0% |
| CTATGTAGTACCAACACTTC+AGG | + | chr1_1:57030390-57030409 | None:intergenic | 40.0% | |
| GTTTCAAACAGCAATTGACC+AGG | - | chr1_1:57030443-57030462 | Msa0030640:CDS | 40.0% | |
| TAGGAGACGGTGATAGTTTA+TGG | + | chr1_1:57030644-57030663 | None:intergenic | 40.0% | |
| TCCAGAGACTAAATAGGAGA+CGG | + | chr1_1:57030657-57030676 | None:intergenic | 40.0% | |
| GCAACCGAGGACTAATTTAA+TGG | + | chr1_1:57030691-57030710 | None:intergenic | 40.0% | |
| !! | CCTCGGTTGCTTTAAAACTA+CGG | - | chr1_1:57030701-57030720 | Msa0030640:intron | 40.0% |
| !! | CTCGGTTGCTTTAAAACTAC+GGG | - | chr1_1:57030702-57030721 | Msa0030640:intron | 40.0% |
| ! | ACTTTTCCAGTTGGATTGTG+AGG | + | chr1_1:57031272-57031291 | None:intergenic | 40.0% |
| CTGTTATAGCCAGGCAATTT+CGG | + | chr1_1:57031340-57031359 | None:intergenic | 40.0% | |
| TCTTGTGCACAAGCAAATTC+AGG | + | chr1_1:57031583-57031602 | None:intergenic | 40.0% | |
| TTCTTGCATTCCTGGAAATG+AGG | + | chr1_1:57031747-57031766 | None:intergenic | 40.0% | |
| CATTTCCAGGAATGCAAGAA+CGG | - | chr1_1:57031747-57031766 | Msa0030640:intron | 40.0% | |
| !!! | GTCTGTATCTTTTAGGTTGG+AGG | - | chr1_1:57031909-57031928 | Msa0030640:intron | 40.0% |
| !!! | TTTTAGGTTGGAGGATAGGA+TGG | - | chr1_1:57031918-57031937 | Msa0030640:intron | 40.0% |
| !! | TTTAGGTTGGAGGATAGGAT+GGG | - | chr1_1:57031919-57031938 | Msa0030640:intron | 40.0% |
| TCTGATAGCAGATGCAATAG+AGG | + | chr1_1:57031957-57031976 | None:intergenic | 40.0% | |
| !! | TTTTCAGGAAGCTGCTTTGA+CGG | - | chr1_1:57032015-57032034 | Msa0030640:intron | 40.0% |
| AGTGATTCAAAGTAGTCAGG+GGG | + | chr1_1:57032052-57032071 | None:intergenic | 40.0% | |
| TACTTGTGTTAGACCCCAAT+TGG | - | chr1_1:57032156-57032175 | Msa0030640:intron | 40.0% | |
| AATAAGAAGAAGGAACCCTG+AGG | + | chr1_1:57032316-57032335 | None:intergenic | 40.0% | |
| AAGCTCGGCAAATAAGAAGA+AGG | + | chr1_1:57032326-57032345 | None:intergenic | 40.0% | |
| AGTGCACATACATCAGAAAG+GGG | + | chr1_1:57032361-57032380 | None:intergenic | 40.0% | |
| GAGTGCACATACATCAGAAA+GGG | + | chr1_1:57032362-57032381 | None:intergenic | 40.0% | |
| AGAGTGCACATACATCAGAA+AGG | + | chr1_1:57032363-57032382 | None:intergenic | 40.0% | |
| ACTACCAGAAGAGATACATC+AGG | - | chr1_1:57032566-57032585 | Msa0030640:intron | 40.0% | |
| CAAACCTGATGTATCTCTTC+TGG | + | chr1_1:57032573-57032592 | None:intergenic | 40.0% | |
| ! | GTAAGCTTTTGGATTCCGAA+GGG | - | chr1_1:57032641-57032660 | Msa0030640:CDS | 40.0% |
| ATATAGTGCAAGATGCCCTT+CGG | + | chr1_1:57032659-57032678 | None:intergenic | 40.0% | |
| ! | AAGTATTGCGTCGCTCTTAT+AGG | + | chr1_1:57032852-57032871 | None:intergenic | 40.0% |
| TAGCATTGCATCTCTGAGCA+AGG | + | chr1_1:57029889-57029908 | None:intergenic | 45.0% | |
| AATGCTATCAACCTCGCTGA+AGG | - | chr1_1:57029902-57029921 | Msa0030640:three_prime_UTR | 45.0% | |
| ! | TTTTGATGTGGAGAGGAGCA+GGG | + | chr1_1:57029940-57029959 | None:intergenic | 45.0% |
| ! | TTTTTGATGTGGAGAGGAGC+AGG | + | chr1_1:57029941-57029960 | None:intergenic | 45.0% |
| ! | AAACGGCGGCATTTTTGATG+TGG | + | chr1_1:57029952-57029971 | None:intergenic | 45.0% |
| ! | GTCGGAATTAATGGCGGAAA+CGG | + | chr1_1:57029969-57029988 | None:intergenic | 45.0% |
| GTTGAGGTCGGAATTAATGG+CGG | + | chr1_1:57029975-57029994 | None:intergenic | 45.0% | |
| ATTCCGACCTCAACCAATAC+AGG | - | chr1_1:57029981-57030000 | Msa0030640:three_prime_UTR | 45.0% | |
| TGTATTTCAAGGCACGTGCA+AGG | - | chr1_1:57030071-57030090 | Msa0030640:three_prime_UTR | 45.0% | |
| ACACTTGGCCAAAATGGTGA+AGG | - | chr1_1:57030103-57030122 | Msa0030640:three_prime_UTR | 45.0% | |
| ACGTCTTCAACCTGAAGTGT+TGG | - | chr1_1:57030377-57030396 | Msa0030640:intron | 45.0% | |
| ACCGTCTCCTATTTAGTCTC+TGG | - | chr1_1:57030653-57030672 | Msa0030640:intron | 45.0% | |
| !!! | CCGTAGTTTTAAAGCAACCG+AGG | + | chr1_1:57030704-57030723 | None:intergenic | 45.0% |
| GGGAGACAATGGTAGTTCAA+GGG | - | chr1_1:57030722-57030741 | Msa0030640:intron | 45.0% | |
| AGGGTCATTGGATTGTACAC+AGG | + | chr1_1:57030844-57030863 | None:intergenic | 45.0% | |
| AAAGGGACAGCAAACATGCA+GGG | + | chr1_1:57030863-57030882 | None:intergenic | 45.0% | |
| AAAAGGGACAGCAAACATGC+AGG | + | chr1_1:57030864-57030883 | None:intergenic | 45.0% | |
| AACAGTCCTCACAATCCAAC+TGG | - | chr1_1:57031263-57031282 | Msa0030640:intron | 45.0% | |
| GACGAACTTGAGACTATTGC+CGG | - | chr1_1:57031302-57031321 | Msa0030640:intron | 45.0% | |
| TTGTAAAGTGAGTGCCCATG+AGG | - | chr1_1:57031402-57031421 | Msa0030640:intron | 45.0% | |
| TATATGTGCTCCAGCCTCAT+GGG | + | chr1_1:57031419-57031438 | None:intergenic | 45.0% | |
| ATATATGTGCTCCAGCCTCA+TGG | + | chr1_1:57031420-57031439 | None:intergenic | 45.0% | |
| TGCACAAAGAGTCCAGAAGA+AGG | + | chr1_1:57031677-57031696 | None:intergenic | 45.0% | |
| TTCTTCTGGACTCTTTGTGC+AGG | - | chr1_1:57031676-57031695 | Msa0030640:intron | 45.0% | |
| ATATCCCTTGCCTCATTTCC+AGG | - | chr1_1:57031734-57031753 | Msa0030640:intron | 45.0% | |
| CATTCCTGGAAATGAGGCAA+GGG | + | chr1_1:57031741-57031760 | None:intergenic | 45.0% | |
| ATAGTCCGTTCTTGCATTCC+TGG | + | chr1_1:57031755-57031774 | None:intergenic | 45.0% | |
| ATAGCAGATGCAATAGAGGC+TGG | + | chr1_1:57031953-57031972 | None:intergenic | 45.0% | |
| GTCAAAGCAGCTTCCTGAAA+AGG | + | chr1_1:57032016-57032035 | None:intergenic | 45.0% | |
| GTGATTCAAAGTAGTCAGGG+GGG | + | chr1_1:57032051-57032070 | None:intergenic | 45.0% | |
| ! | ATTAAGTTGCTTGCGGGAGT+GGG | - | chr1_1:57032271-57032290 | Msa0030640:intron | 45.0% |
| GTGTGAAAAAATCCCTGTCC+TGG | + | chr1_1:57032508-57032527 | None:intergenic | 45.0% | |
| GCTGCGGTTTCAGAAAAACT+GGG | - | chr1_1:57032619-57032638 | Msa0030640:CDS | 45.0% | |
| ! | GGTAAGCTTTTGGATTCCGA+AGG | - | chr1_1:57032640-57032659 | Msa0030640:CDS | 45.0% |
| ! | GCGGCATTTTTGATGTGGAG+AGG | + | chr1_1:57029947-57029966 | None:intergenic | 50.0% |
| ! | GGAATTAATGGCGGAAACGG+CGG | + | chr1_1:57029966-57029985 | None:intergenic | 50.0% |
| AGAGTATGACTTCGTCACCC+TGG | + | chr1_1:57030464-57030483 | None:intergenic | 50.0% | |
| CAAGGATGTGTTACCATGGC+TGG | - | chr1_1:57030507-57030526 | Msa0030640:CDS | 50.0% | |
| TGGTGGCAATGCAAGCTTAC+AGG | + | chr1_1:57030540-57030559 | None:intergenic | 50.0% | |
| CGGGAGACAATGGTAGTTCA+AGG | - | chr1_1:57030721-57030740 | Msa0030640:intron | 50.0% | |
| CAGCAAACATGCAGGGTCAT+TGG | + | chr1_1:57030856-57030875 | None:intergenic | 50.0% | |
| CTTGGATCCAAGGTCCACTT+AGG | + | chr1_1:57030993-57031012 | None:intergenic | 50.0% | |
| GCATTCCTGGAAATGAGGCA+AGG | + | chr1_1:57031742-57031761 | None:intergenic | 50.0% | |
| ! | TTCTGCTCCAGCTCCTTTTC+AGG | - | chr1_1:57032000-57032019 | Msa0030640:intron | 50.0% |
| ! | CATTAAGTTGCTTGCGGGAG+TGG | - | chr1_1:57032270-57032289 | Msa0030640:intron | 50.0% |
| CTTATTTGCCGAGCTTCCTG+AGG | - | chr1_1:57032330-57032349 | Msa0030640:CDS | 50.0% | |
| TCAGAAAGGGGACAATCCTC+AGG | + | chr1_1:57032349-57032368 | None:intergenic | 50.0% | |
| GTTAATACTAGAAGCCGGGG+TGG | - | chr1_1:57032474-57032493 | Msa0030640:intron | 50.0% | |
| CTGCAAGAGCGAGACAACTT+TGG | - | chr1_1:57032597-57032616 | Msa0030640:intron | 50.0% | |
| GGCTGCGGTTTCAGAAAAAC+TGG | - | chr1_1:57032618-57032637 | Msa0030640:CDS | 50.0% | |
| GGATGTGTTACCATGGCTGG+TGG | - | chr1_1:57030510-57030529 | Msa0030640:CDS | 55.0% | |
| TACAGGAACACCACCAGCCA+TGG | + | chr1_1:57030523-57030542 | None:intergenic | 55.0% | |
| GTCCACTTAGGCGGGTCAAA+CGG | + | chr1_1:57030981-57031000 | None:intergenic | 55.0% | |
| GATCCAAGGTCCACTTAGGC+GGG | + | chr1_1:57030989-57031008 | None:intergenic | 55.0% | |
| GGATCCAAGGTCCACTTAGG+CGG | + | chr1_1:57030990-57031009 | None:intergenic | 55.0% | |
| ATTTCGGCTGCAGCATGCTC+CGG | + | chr1_1:57031324-57031343 | None:intergenic | 55.0% | |
| ATGCTGCAGCCGAAATTGCC+TGG | - | chr1_1:57031328-57031347 | Msa0030640:intron | 55.0% | |
| AAAGTGAGTGCCCATGAGGC+TGG | - | chr1_1:57031406-57031425 | Msa0030640:intron | 55.0% | |
| GCAGCTTCCTGAAAAGGAGC+TGG | + | chr1_1:57032010-57032029 | None:intergenic | 55.0% | |
| GGGACAATCCTCAGGAAGCT+CGG | + | chr1_1:57032341-57032360 | None:intergenic | 55.0% | |
| AATACTAGAAGCCGGGGTGG+TGG | - | chr1_1:57032477-57032496 | Msa0030640:intron | 55.0% | |
| GAGCGAGACAACTTTGGCTG+CGG | - | chr1_1:57032603-57032622 | Msa0030640:CDS | 55.0% | |
| CGGAGCCGCTATGAAGATTG+AGG | - | chr1_1:57032706-57032725 | Msa0030640:CDS | 55.0% | |
| AGTCAGGGAAGCCTTCAGCG+AGG | + | chr1_1:57029916-57029935 | None:intergenic | 60.0% | |
| GGAGAGGAGCAGGGAAGTCA+GGG | + | chr1_1:57029931-57029950 | None:intergenic | 60.0% | |
| TGGAGAGGAGCAGGGAAGTC+AGG | + | chr1_1:57029932-57029951 | None:intergenic | 60.0% | |
| ! | TGCCGTTTGACCCGCCTAAG+TGG | - | chr1_1:57030976-57030995 | Msa0030640:intron | 60.0% |
| TGACCCGCCTAAGTGGACCT+TGG | - | chr1_1:57030983-57031002 | Msa0030640:intron | 60.0% | |
| GTGGTGGCTGTTCCAGGACA+GGG | - | chr1_1:57032493-57032512 | Msa0030640:intron | 60.0% | |
| TCCTGGAACAGCCACCACCC+CGG | + | chr1_1:57032491-57032510 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCTGTTCCAGGAC+AGG | - | chr1_1:57032492-57032511 | Msa0030640:intron | 65.0% |
| ! | GCCGGGGTGGTGGCTGTTCC+AGG | - | chr1_1:57032487-57032506 | Msa0030640:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57029779 | 57033032 | 57029779 | ID=Msa0030640;Name=Msa0030640 |
| chr1_1 | mRNA | 57029779 | 57033032 | 57029779 | ID=Msa0030640-mRNA-1;Parent=Msa0030640;Name=Msa0030640-mRNA-1;_AED=0.34;_eAED=0.34;_QI=42|0.85|0.87|1|1|1|8|351|375 |
| chr1_1 | exon | 57029779 | 57030354 | 57029779 | ID=Msa0030640-mRNA-1:exon:17186;Parent=Msa0030640-mRNA-1 |
| chr1_1 | exon | 57030442 | 57030567 | 57030442 | ID=Msa0030640-mRNA-1:exon:17185;Parent=Msa0030640-mRNA-1 |
| chr1_1 | exon | 57030733 | 57030887 | 57030733 | ID=Msa0030640-mRNA-1:exon:17184;Parent=Msa0030640-mRNA-1 |
| chr1_1 | exon | 57030999 | 57031113 | 57030999 | ID=Msa0030640-mRNA-1:exon:17183;Parent=Msa0030640-mRNA-1 |
| chr1_1 | exon | 57031447 | 57031554 | 57031447 | ID=Msa0030640-mRNA-1:exon:17182;Parent=Msa0030640-mRNA-1 |
| chr1_1 | exon | 57032272 | 57032357 | 57032272 | ID=Msa0030640-mRNA-1:exon:17181;Parent=Msa0030640-mRNA-1 |
| chr1_1 | exon | 57032599 | 57032729 | 57032599 | ID=Msa0030640-mRNA-1:exon:17180;Parent=Msa0030640-mRNA-1 |
| chr1_1 | exon | 57032809 | 57033032 | 57032809 | ID=Msa0030640-mRNA-1:exon:17179;Parent=Msa0030640-mRNA-1 |
| chr1_1 | five_prime_UTR | 57032991 | 57033032 | 57032991 | ID=Msa0030640-mRNA-1:five_prime_utr;Parent=Msa0030640-mRNA-1 |
| chr1_1 | CDS | 57032809 | 57032990 | 57032809 | ID=Msa0030640-mRNA-1:cds;Parent=Msa0030640-mRNA-1 |
| chr1_1 | CDS | 57032599 | 57032729 | 57032599 | ID=Msa0030640-mRNA-1:cds;Parent=Msa0030640-mRNA-1 |
| chr1_1 | CDS | 57032272 | 57032357 | 57032272 | ID=Msa0030640-mRNA-1:cds;Parent=Msa0030640-mRNA-1 |
| chr1_1 | CDS | 57031447 | 57031554 | 57031447 | ID=Msa0030640-mRNA-1:cds;Parent=Msa0030640-mRNA-1 |
| chr1_1 | CDS | 57030999 | 57031113 | 57030999 | ID=Msa0030640-mRNA-1:cds;Parent=Msa0030640-mRNA-1 |
| chr1_1 | CDS | 57030733 | 57030887 | 57030733 | ID=Msa0030640-mRNA-1:cds;Parent=Msa0030640-mRNA-1 |
| chr1_1 | CDS | 57030442 | 57030567 | 57030442 | ID=Msa0030640-mRNA-1:cds;Parent=Msa0030640-mRNA-1 |
| chr1_1 | CDS | 57030130 | 57030354 | 57030130 | ID=Msa0030640-mRNA-1:cds;Parent=Msa0030640-mRNA-1 |
| chr1_1 | three_prime_UTR | 57029779 | 57030129 | 57029779 | ID=Msa0030640-mRNA-1:three_prime_utr;Parent=Msa0030640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
