AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412750 MtrunA17_Chr1g0193711 96.813 251 8 0 1 251 1 251 0.0 503
Msa1412750 MtrunA17_Chr7g0270991 69.650 257 71 5 1 251 6 261 3.03e-118 338
Msa1412750 MtrunA17_Chr1g0213971 64.677 201 63 3 52 249 48 243 2.28e-88 262
Msa1412750 MtrunA17_Chr3g0104751 65.027 183 55 2 74 249 23 203 8.57e-78 233
Msa1412750 MtrunA17_Chr3g0113441 63.842 177 54 3 78 247 58 231 1.11e-72 221
Msa1412750 MtrunA17_Chr7g0274841 67.808 146 40 1 86 224 5 150 5.02e-69 210
Msa1412750 MtrunA17_Chr4g0038431 65.101 149 45 1 83 224 2 150 1.10e-68 209
Msa1412750 MtrunA17_Chr3g0145501 66.438 146 42 1 86 224 13 158 4.23e-67 206
Msa1412750 MtrunA17_Chr8g0353571 58.084 167 63 3 87 247 20 185 3.88e-62 193
Msa1412750 MtrunA17_Chr7g0260441 59.763 169 58 2 87 247 9 175 2.42e-61 204
Msa1412750 MtrunA17_Chr4g0045321 56.977 172 65 2 85 248 4 174 2.05e-60 194
Msa1412750 MtrunA17_Chr8g0374621 57.647 170 63 2 86 247 5 173 3.07e-60 194
Msa1412750 MtrunA17_Chr4g0037281 52.332 193 79 4 68 248 25 216 3.88e-59 187
Msa1412750 MtrunA17_Chr1g0149061 46.409 181 86 3 79 251 1 178 1.34e-41 151
Msa1412750 MtrunA17_Chr2g0321111 43.850 187 98 6 58 243 431 611 1.02e-40 147
Msa1412750 MtrunA17_Chr3g0138061 47.399 173 81 2 87 251 12 182 2.01e-40 148
Msa1412750 MtrunA17_Chr7g0266721 49.664 149 69 5 97 244 17 160 1.02e-39 135
Msa1412750 MtrunA17_Chr8g0351571 50.345 145 64 5 99 241 10 148 6.83e-33 117
Msa1412750 MtrunA17_Chr5g0401141 47.222 144 70 5 99 241 354 492 2.10e-29 115
Msa1412750 MtrunA17_Chr3g0122871 62.712 59 22 0 170 228 55 113 4.11e-23 90.9
Msa1412750 MtrunA17_Chr2g0288371 44.872 156 74 8 92 242 15 163 1.29e-21 93.2
Msa1412750 MtrunA17_Chr6g0484281 37.500 168 83 9 97 250 8 167 2.03e-16 78.2
Msa1412750 MtrunA17_Chr8g0357591 36.905 168 84 9 97 250 8 167 2.83e-15 75.1
Msa1412750 MtrunA17_Chr2g0305071 27.094 203 107 8 71 234 44 244 1.59e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412750 AT3G62030.3 62.121 264 80 7 1 250 1 258 7.44e-106 307
Msa1412750 AT3G62030.1 61.887 265 80 7 1 250 1 259 1.07e-105 306
Msa1412750 AT3G62030.2 70.370 216 55 4 42 251 101 313 1.04e-104 306
Msa1412750 AT5G13120.2 64.615 195 61 3 62 249 59 252 6.93e-87 259
Msa1412750 AT5G13120.1 64.615 195 61 3 62 249 63 256 8.72e-87 258
Msa1412750 AT2G29960.1 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa1412750 AT2G29960.3 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa1412750 AT5G58710.1 66.286 175 50 2 82 249 32 204 5.69e-76 229
Msa1412750 AT3G55920.1 58.462 195 71 3 62 249 37 228 1.04e-71 219
Msa1412750 AT2G21130.1 62.722 169 54 2 86 247 6 172 2.11e-71 216
Msa1412750 AT3G56070.1 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa1412750 AT3G56070.2 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa1412750 AT4G38740.1 60.947 169 57 2 86 247 5 171 2.96e-69 211
Msa1412750 AT2G16600.1 66.438 146 42 1 86 224 6 151 1.36e-68 209
Msa1412750 AT2G29960.2 60.428 187 50 4 75 249 17 191 8.57e-68 208
Msa1412750 AT4G34870.1 57.396 169 63 2 86 247 5 171 1.34e-62 194
Msa1412750 AT3G63400.2 57.955 176 64 2 79 246 1 174 2.07e-61 198
Msa1412750 AT2G38730.1 57.485 167 64 3 87 247 34 199 4.71e-61 191
Msa1412750 AT4G34960.1 55.682 176 70 2 82 250 44 218 1.73e-60 190
Msa1412750 AT3G63400.3 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1412750 AT3G63400.4 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1412750 AT3G63400.1 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1412750 AT2G15790.1 58.721 172 62 2 85 248 4 174 1.06e-59 193
Msa1412750 AT2G16600.2 61.871 139 38 1 86 224 6 129 2.57e-58 182
Msa1412750 AT4G34960.2 60.156 128 44 1 82 202 44 171 1.30e-47 155
Msa1412750 AT3G44600.1 44.920 187 96 6 58 243 445 625 3.46e-41 149
Msa1412750 AT2G36130.1 48.993 149 70 5 97 244 17 160 3.49e-39 134
Msa1412750 AT3G22920.1 43.605 172 80 5 85 247 4 167 2.11e-35 126
Msa1412750 AT4G32420.1 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1412750 AT4G32420.5 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1412750 AT4G32420.3 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1412750 AT4G32420.6 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1412750 AT4G32420.4 47.403 154 73 1 79 224 1 154 4.89e-34 130
Msa1412750 AT1G01940.1 51.515 132 57 4 99 228 10 136 1.36e-32 117
Msa1412750 AT5G67530.1 44.898 147 75 5 99 244 353 494 1.74e-29 116
Msa1412750 AT4G33060.1 48.800 125 56 5 92 213 15 134 7.76e-26 105
Msa1412750 AT1G53720.2 36.970 165 88 7 97 250 8 167 5.06e-17 79.7
Msa1412750 AT1G53720.1 36.970 165 88 7 97 250 8 167 6.51e-17 80.1
Msa1412750 AT3G66654.4 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1412750 AT3G66654.2 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1412750 AT3G66654.3 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1412750 AT3G66654.1 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1412750 AT3G66654.5 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1412750 AT2G47320.1 31.818 132 83 4 99 230 87 211 7.31e-11 60.8

Find 75 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCAGAACCTTCTTTC+TGG 0.154886 tig0023943:+74366 Msa1412750:CDS
CAATTAATGTATAAGGATTT+TGG 0.155123 tig0023943:-77294 None:intergenic
AGGATTGTTATTGGCCTATT+TGG 0.177067 tig0023943:+75210 Msa1412750:CDS
AATCAAAGATTTCATGATTC+AGG 0.190133 tig0023943:+75435 Msa1412750:CDS
GACAATCGCCATGTTGTATT+TGG 0.201360 tig0023943:+76926 Msa1412750:CDS
TCGGAAATTCTCAACTGTTT+TGG 0.213114 tig0023943:-75244 None:intergenic
GTTAATTATAGTGAGAAAAT+TGG 0.213849 tig0023943:+77362 Msa1412750:three_prime_UTR
TCACTTCAGCTGAAACTTAT+AGG 0.216930 tig0023943:-74217 None:intergenic
AATTGACTGCCGTTACTATT+AGG 0.258601 tig0023943:-75867 None:intergenic
GCAGTTAAGGAGGGTGGTTT+TGG 0.262552 tig0023943:+77119 Msa1412750:three_prime_UTR
TCTGCTGGAAGGATTGTTAT+TGG 0.310916 tig0023943:+75201 Msa1412750:CDS
GGTAGTTCAATTCCTGTGTT+TGG 0.318369 tig0023943:+77155 Msa1412750:three_prime_UTR
AAAATGACAATTAATGTATA+AGG 0.322234 tig0023943:-77301 None:intergenic
GAAAACCTTGCTTGTTACTT+TGG 0.335769 tig0023943:-75154 None:intergenic
TCATTACGCGGCTAGGCTTT+CGG 0.339565 tig0023943:+74930 Msa1412750:CDS
AACCACGCGTGTTATCTAAA+AGG 0.362659 tig0023943:-74189 None:intergenic
TGGGAACAACATCTCCAAAT+AGG 0.365016 tig0023943:-75224 None:intergenic
AATGTGGCACAAAACTTTCT+AGG 0.369756 tig0023943:-74285 None:intergenic
ACTGGTGGAGTCAGTATCTA+TGG 0.378727 tig0023943:+75588 Msa1412750:CDS
AATTTATGCTTCTGAACTGT+TGG 0.402995 tig0023943:+77332 Msa1412750:three_prime_UTR
AAGCGAAATCAATCACTTCT+CGG 0.414942 tig0023943:+74968 Msa1412750:CDS
TGTCAATTACAATGCAGTTA+AGG 0.425790 tig0023943:+77106 Msa1412750:three_prime_UTR
TTCTGGTTTCAATGCTGTCC+AGG 0.432366 tig0023943:+74383 Msa1412750:CDS
TGTGCAGGAGAGAAAGGATA+TGG 0.434325 tig0023943:+75385 Msa1412750:intron
TCTGGAGAACTTCCTCTAGA+TGG 0.439502 tig0023943:+77046 Msa1412750:CDS
TTCTTTGATGTAGTTATTGG+AGG 0.441576 tig0023943:+75174 Msa1412750:CDS
AGTCTGCTAATGCATAATAT+AGG 0.446327 tig0023943:-77266 None:intergenic
ACTCGAGTGTGAAGAAGATT+AGG 0.448639 tig0023943:+74255 Msa1412750:five_prime_UTR
ATCAAAGATTTCATGATTCA+GGG 0.450983 tig0023943:+75436 Msa1412750:CDS
GTATTTGGACATGTCATTGA+TGG 0.451288 tig0023943:+76941 Msa1412750:CDS
ATCTTTGTTCTCAACACAGT+TGG 0.459490 tig0023943:+74341 Msa1412750:CDS
AGATTTCATGATTCAGGGAG+GGG 0.477957 tig0023943:+75441 Msa1412750:CDS
AATAACTGTGCAGGAGAGAA+AGG 0.485014 tig0023943:+75379 Msa1412750:intron
GGATGCAGTAAATTGTCATC+AGG 0.485711 tig0023943:+74904 Msa1412750:CDS
AATAATTAAATGCCACTGAA+AGG 0.490665 tig0023943:+77202 Msa1412750:three_prime_UTR
AATTTCCGAGCTTTGTGCAC+AGG 0.492690 tig0023943:+75258 Msa1412750:CDS
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 tig0023943:+75819 Msa1412750:intron
ACTGCATCCAAGGTGTGCTC+TGG 0.499496 tig0023943:-74890 None:intergenic
ACATGCAAAATTGTTAACTC+TGG 0.506072 tig0023943:+77028 Msa1412750:CDS
ATAATTAAATGCCACTGAAA+GGG 0.508280 tig0023943:+77203 Msa1412750:three_prime_UTR
TTTAATTGGATGCAGGGAAC+TGG 0.519277 tig0023943:+75570 Msa1412750:intron
GCTTACCTGTGCACAAAGCT+CGG 0.530446 tig0023943:-75263 None:intergenic
CAGGATATCATTACGCGGCT+AGG 0.536024 tig0023943:+74923 Msa1412750:CDS
TTTGATTATGCGATGGAAGG+TGG 0.537643 tig0023943:-75419 None:intergenic
TACAATGCAGTTAAGGAGGG+TGG 0.541796 tig0023943:+77113 Msa1412750:three_prime_UTR
CATGTTGTAGACTTCATGGT+TGG 0.543936 tig0023943:+76904 Msa1412750:intron
TGGACATGTCATTGATGGAA+TGG 0.546157 tig0023943:+76946 Msa1412750:CDS
TTTGCCATGCTCAAAACTCC+AGG 0.566786 tig0023943:-75837 None:intergenic
GTTATTGGAGGTGAATCTGC+TGG 0.567014 tig0023943:+75186 Msa1412750:CDS
ATGACAATTTACTGCATCCA+AGG 0.568939 tig0023943:-74900 None:intergenic
CAATTACAATGCAGTTAAGG+AGG 0.570128 tig0023943:+77109 Msa1412750:three_prime_UTR
TGAAATCTTTGATTATGCGA+TGG 0.571761 tig0023943:-75426 None:intergenic
AAGATTTCATGATTCAGGGA+GGG 0.575956 tig0023943:+75440 Msa1412750:CDS
TGTGAGGACACTTGAATCAC+AGG 0.579355 tig0023943:+76973 Msa1412750:CDS
AATTGGATGCAGGGAACTGG+TGG 0.579513 tig0023943:+75573 Msa1412750:intron
TTCCTTGCAGTGAAGCATGT+TGG 0.583628 tig0023943:+75813 Msa1412750:intron
CAGCATTGAAACCAGAAAGA+AGG 0.585026 tig0023943:-74377 None:intergenic
TTCGCTAAATGCCCTTTCAG+TGG 0.592657 tig0023943:-77214 None:intergenic
ACTGCCGTTACTATTAGGAC+CGG 0.594476 tig0023943:-75862 None:intergenic
ATCTTTGATTATGCGATGGA+AGG 0.597625 tig0023943:-75422 None:intergenic
AAGAATGTACAGCACTTCAG+AGG 0.599350 tig0023943:-77078 None:intergenic
GAGACAAGCAGCTACAACAA+TGG 0.607894 tig0023943:+76995 Msa1412750:CDS
TTGGAGGTGAATCTGCTGGA+AGG 0.612520 tig0023943:+75190 Msa1412750:CDS
CAGGGAGGGGACTTCACAGA+AGG 0.623364 tig0023943:+75454 Msa1412750:CDS
AGCAGTACCAGAGCACACCT+TGG 0.625062 tig0023943:+74883 Msa1412750:CDS
AATTACAATGCAGTTAAGGA+GGG 0.640700 tig0023943:+77110 Msa1412750:three_prime_UTR
GCAAGCCAAAGTAACAAGCA+AGG 0.646742 tig0023943:+75149 Msa1412750:CDS
AATGCCGGTCCTAATAGTAA+CGG 0.652519 tig0023943:+75858 Msa1412750:CDS
AGCAATGACAATCCAAACAC+AGG 0.657721 tig0023943:-77167 None:intergenic
AGGAGAGATCAACCATCTAG+AGG 0.666652 tig0023943:-77058 None:intergenic
AAAGATTTCATGATTCAGGG+AGG 0.670380 tig0023943:+75439 Msa1412750:CDS
GGTGGAGTCAGTATCTATGG+TGG 0.680041 tig0023943:+75591 Msa1412750:CDS
TGACATGTCCAAATACAACA+TGG 0.711914 tig0023943:-76934 None:intergenic
TTGATGGAATGGATGTTGTG+AGG 0.719565 tig0023943:+76957 Msa1412750:CDS
GTCATCAGGATATCATTACG+CGG 0.726671 tig0023943:+74918 Msa1412750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTTAAATAAATTTCAA+AGG - tig0023943:76051-76070 None:intergenic 10.0%
!! AAAACATATTATTAAAACTT+GGG - tig0023943:76307-76326 None:intergenic 10.0%
!!! TTTGTTTTTGTTTTCATTTT+AGG + tig0023943:74840-74859 Msa1412750:intron 15.0%
!!! TTGTTTTTGTTTTCATTTTA+GGG + tig0023943:74841-74860 Msa1412750:intron 15.0%
!! ACAAATTTAAATCTGAATAA+TGG - tig0023943:75724-75743 None:intergenic 15.0%
!! TAATCTAATAAACTATTCTA+AGG + tig0023943:75995-76014 Msa1412750:intron 15.0%
!! GAAAACATATTATTAAAACT+TGG - tig0023943:76308-76327 None:intergenic 15.0%
!!! AAATTTGAGTTTTGAAATAT+AGG - tig0023943:76473-76492 None:intergenic 15.0%
!! AAAATGACAATTAATGTATA+AGG - tig0023943:77304-77323 None:intergenic 15.0%
!! GTTTAATAAGTCTTTAAATG+TGG + tig0023943:74705-74724 Msa1412750:intron 20.0%
!! TGTAAATGTACATTGTTAAT+GGG + tig0023943:74808-74827 Msa1412750:intron 20.0%
!!! TGTTTTTGTTTTCATTTTAG+GGG + tig0023943:74842-74861 Msa1412750:intron 20.0%
!!! TAAGCATTCAAATTTTTCTT+CGG + tig0023943:75281-75300 Msa1412750:intron 20.0%
!!! CACATCAAATATGTTTTAAT+TGG + tig0023943:75556-75575 Msa1412750:intron 20.0%
!!! TGTCATTTTAATCTTTTTAC+TGG + tig0023943:75741-75760 Msa1412750:intron 20.0%
!! TTCATAAAGTAATAGAAGAT+GGG - tig0023943:75925-75944 None:intergenic 20.0%
!! ATTCATAAAGTAATAGAAGA+TGG - tig0023943:75926-75945 None:intergenic 20.0%
!! ATTACTTTATGAATCAGATA+AGG + tig0023943:75932-75951 Msa1412750:intron 20.0%
!! TTACTTTATGAATCAGATAA+GGG + tig0023943:75933-75952 Msa1412750:intron 20.0%
!! TTAGCATTTGTATTAACATT+TGG - tig0023943:76121-76140 None:intergenic 20.0%
!!! AGCATTTAGAATAACTTATT+CGG - tig0023943:76157-76176 None:intergenic 20.0%
!! AATATTCCTTGTATGTAAAA+GGG - tig0023943:76343-76362 None:intergenic 20.0%
!! TAATATTCCTTGTATGTAAA+AGG - tig0023943:76344-76363 None:intergenic 20.0%
!! TTTACATACAAGGAATATTA+TGG + tig0023943:76344-76363 Msa1412750:intron 20.0%
!! TTACATACAAGGAATATTAT+GGG + tig0023943:76345-76364 Msa1412750:intron 20.0%
!!! TTTTTATGGATTTTAAACTG+TGG + tig0023943:76514-76533 Msa1412750:intron 20.0%
!!! CAATTAATGTATAAGGATTT+TGG - tig0023943:77297-77316 None:intergenic 20.0%
!! GTTAATTATAGTGAGAAAAT+TGG + tig0023943:77362-77381 Msa1412750:three_prime_UTR 20.0%
! ATAAGAATTAGATAGTAACC+TGG - tig0023943:74404-74423 None:intergenic 25.0%
!! TTAAGGTGTTTATTCAAACA+GGG - tig0023943:74449-74468 None:intergenic 25.0%
!! ATTAAGGTGTTTATTCAAAC+AGG - tig0023943:74450-74469 None:intergenic 25.0%
! CTGTAAATGTACATTGTTAA+TGG + tig0023943:74807-74826 Msa1412750:intron 25.0%
! ACCATTAAAATTACGTGATT+TGG + tig0023943:75026-75045 Msa1412750:intron 25.0%
!! TCCAAATCACGTAATTTTAA+TGG - tig0023943:75030-75049 None:intergenic 25.0%
!! ATTTCGTTTGCAGAAAATTT+TGG + tig0023943:75050-75069 Msa1412750:intron 25.0%
!! AAAATTTTGGATAGCCAATT+CGG + tig0023943:75063-75082 Msa1412750:intron 25.0%
!! ATTGGTTTCATTATCTTACA+TGG + tig0023943:75100-75119 Msa1412750:intron 25.0%
!! GTTTTCTTTGATGTAGTTAT+TGG + tig0023943:75171-75190 Msa1412750:CDS 25.0%
! AATCAAAGATTTCATGATTC+AGG + tig0023943:75435-75454 Msa1412750:CDS 25.0%
! ATCAAAGATTTCATGATTCA+GGG + tig0023943:75436-75455 Msa1412750:CDS 25.0%
! AGCGTACTAACAAAATATAA+CGG - tig0023943:75491-75510 None:intergenic 25.0%
!!! AATATGTTTTAATTGGATGC+AGG + tig0023943:75563-75582 Msa1412750:intron 25.0%
!!! ATATGTTTTAATTGGATGCA+GGG + tig0023943:75564-75583 Msa1412750:intron 25.0%
!! CAGTATTAAAAGTTTTGCTT+TGG + tig0023943:75698-75717 Msa1412750:intron 25.0%
!!! ATTTTTTATTTGCACTGTAC+CGG + tig0023943:75887-75906 Msa1412750:CDS 25.0%
! TACTTTATGAATCAGATAAG+GGG + tig0023943:75934-75953 Msa1412750:intron 25.0%
!!! CTGGAAATGTATTTTTAAGT+GGG + tig0023943:76238-76257 Msa1412750:intron 25.0%
! AACTCAAAAAACAACTTGTA+AGG - tig0023943:76276-76295 None:intergenic 25.0%
!!! TACAAGTTGTTTTTTGAGTT+AGG + tig0023943:76276-76295 Msa1412750:intron 25.0%
! CATATTATTAAAACTTGGGT+TGG - tig0023943:76303-76322 None:intergenic 25.0%
!!! CTAAAAGTCTGTACTTTTTA+TGG + tig0023943:76500-76519 Msa1412750:intron 25.0%
! TTGACCTACTGAAAAAATAA+AGG + tig0023943:76554-76573 Msa1412750:intron 25.0%
! ATAATTGCATTTGTGAGATT+GGG - tig0023943:76597-76616 None:intergenic 25.0%
! TATAATTGCATTTGTGAGAT+TGG - tig0023943:76598-76617 None:intergenic 25.0%
! CAATTGCTACAATGTTATAT+TGG + tig0023943:76631-76650 Msa1412750:intron 25.0%
! TTTGACAATTTAACATCAAC+AGG + tig0023943:76665-76684 Msa1412750:intron 25.0%
! TTGACAATTTAACATCAACA+GGG + tig0023943:76666-76685 Msa1412750:intron 25.0%
!! ACAATTTTGCATGTTTTCAA+GGG - tig0023943:77022-77041 None:intergenic 25.0%
!! AACAATTTTGCATGTTTTCA+AGG - tig0023943:77023-77042 None:intergenic 25.0%
! AATAATTAAATGCCACTGAA+AGG + tig0023943:77202-77221 Msa1412750:three_prime_UTR 25.0%
! ATAATTAAATGCCACTGAAA+GGG + tig0023943:77203-77222 Msa1412750:three_prime_UTR 25.0%
!!! AGCGAATTACTTATTTTGTA+AGG + tig0023943:77231-77250 Msa1412750:three_prime_UTR 25.0%
!!! GACAAACAAGCAACTTTTTT+GGG - tig0023943:74316-74335 None:intergenic 30.0%
!!! TGACAAACAAGCAACTTTTT+TGG - tig0023943:74317-74336 None:intergenic 30.0%
AAAAAGTTGCTTGTTTGTCA+TGG + tig0023943:74317-74336 Msa1412750:exon 30.0%
ATGCTATAAGCTGCAAATTA+AGG - tig0023943:74466-74485 None:intergenic 30.0%
! GCATAAGAATGTGTTACTAA+AGG + tig0023943:74781-74800 Msa1412750:intron 30.0%
TTCTTTGATGTAGTTATTGG+AGG + tig0023943:75174-75193 Msa1412750:CDS 30.0%
! TATGAGTATTGTGGTGAAAT+TGG + tig0023943:75318-75337 Msa1412750:intron 30.0%
TTTGAGAATAATAACTGTGC+AGG + tig0023943:75370-75389 Msa1412750:intron 30.0%
TGAAATCTTTGATTATGCGA+TGG - tig0023943:75429-75448 None:intergenic 30.0%
TACATATACACATGATGCTA+AGG + tig0023943:75517-75536 Msa1412750:intron 30.0%
ACATATACACATGATGCTAA+GGG + tig0023943:75518-75537 Msa1412750:intron 30.0%
CCACTTAAAAATACATTTCC+AGG - tig0023943:76240-76259 None:intergenic 30.0%
!! CCTGGAAATGTATTTTTAAG+TGG + tig0023943:76237-76256 Msa1412750:intron 30.0%
AAAAACAACTTGTAAGGTGA+GGG - tig0023943:76270-76289 None:intergenic 30.0%
AAAAAACAACTTGTAAGGTG+AGG - tig0023943:76271-76290 None:intergenic 30.0%
!! AAAAGTACAGACTTTTAGCT+AGG - tig0023943:76498-76517 None:intergenic 30.0%
!!! CAAGCCTTTATTTTTTCAGT+AGG - tig0023943:76561-76580 None:intergenic 30.0%
! TTTTCATGTTGTAGACTTCA+TGG + tig0023943:76900-76919 Msa1412750:intron 30.0%
ACATGCAAAATTGTTAACTC+TGG + tig0023943:77028-77047 Msa1412750:CDS 30.0%
TGTCAATTACAATGCAGTTA+AGG + tig0023943:77106-77125 Msa1412750:three_prime_UTR 30.0%
AATTACAATGCAGTTAAGGA+GGG + tig0023943:77110-77129 Msa1412750:three_prime_UTR 30.0%
AGTCTGCTAATGCATAATAT+AGG - tig0023943:77269-77288 None:intergenic 30.0%
AATTTATGCTTCTGAACTGT+TGG + tig0023943:77332-77351 Msa1412750:three_prime_UTR 30.0%
TCACTTCAGCTGAAACTTAT+AGG - tig0023943:74220-74239 None:intergenic 35.0%
AATGTGGCACAAAACTTTCT+AGG - tig0023943:74288-74307 None:intergenic 35.0%
!!! ACTTTTTTGGGTGGAAAATG+TGG - tig0023943:74304-74323 None:intergenic 35.0%
!!! AAACAAGCAACTTTTTTGGG+TGG - tig0023943:74313-74332 None:intergenic 35.0%
ATCTTTGTTCTCAACACAGT+TGG + tig0023943:74341-74360 Msa1412750:CDS 35.0%
ATGACAATTTACTGCATCCA+AGG - tig0023943:74903-74922 None:intergenic 35.0%
AAGCGAAATCAATCACTTCT+CGG + tig0023943:74968-74987 Msa1412750:CDS 35.0%
! GAAAACCTTGCTTGTTACTT+TGG - tig0023943:75157-75176 None:intergenic 35.0%
! AGGATTGTTATTGGCCTATT+TGG + tig0023943:75210-75229 Msa1412750:CDS 35.0%
! CGGAAATTCTCAACTGTTTT+GGG - tig0023943:75246-75265 None:intergenic 35.0%
! TCGGAAATTCTCAACTGTTT+TGG - tig0023943:75247-75266 None:intergenic 35.0%
! TTGTCGTTGTATGAGTATTG+TGG + tig0023943:75309-75328 Msa1412750:intron 35.0%
ATCTTTGATTATGCGATGGA+AGG - tig0023943:75425-75444 None:intergenic 35.0%
AAAGATTTCATGATTCAGGG+AGG + tig0023943:75439-75458 Msa1412750:CDS 35.0%
AAGATTTCATGATTCAGGGA+GGG + tig0023943:75440-75459 Msa1412750:CDS 35.0%
! TCTTTTTACTGGACTGTCAA+TGG + tig0023943:75752-75771 Msa1412750:intron 35.0%
AATTGACTGCCGTTACTATT+AGG - tig0023943:75870-75889 None:intergenic 35.0%
! GAAGTTCCCTTTTACATACA+AGG + tig0023943:76334-76353 Msa1412750:intron 35.0%
! ATAGGCTGTGTGTTTCATTT+TGG - tig0023943:76455-76474 None:intergenic 35.0%
TGGTTGAGACGCTAAATATT+AGG - tig0023943:76807-76826 None:intergenic 35.0%
TGACATGTCCAAATACAACA+TGG - tig0023943:76937-76956 None:intergenic 35.0%
GTATTTGGACATGTCATTGA+TGG + tig0023943:76941-76960 Msa1412750:CDS 35.0%
CAATTACAATGCAGTTAAGG+AGG + tig0023943:77109-77128 Msa1412750:three_prime_UTR 35.0%
! ATCCTTTTAGATAACACGCG+TGG + tig0023943:74187-74206 Msa1412750:five_prime_UTR 40.0%
AACCACGCGTGTTATCTAAA+AGG - tig0023943:74192-74211 None:intergenic 40.0%
ACTCGAGTGTGAAGAAGATT+AGG + tig0023943:74255-74274 Msa1412750:five_prime_UTR 40.0%
! CAGCATTGAAACCAGAAAGA+AGG - tig0023943:74380-74399 None:intergenic 40.0%
GGATGCAGTAAATTGTCATC+AGG + tig0023943:74904-74923 Msa1412750:CDS 40.0%
GTCATCAGGATATCATTACG+CGG + tig0023943:74918-74937 Msa1412750:CDS 40.0%
!! GTTTTGAATCACAGCCGAAT+TGG - tig0023943:75080-75099 None:intergenic 40.0%
TCGGCTGTGATTCAAAACAT+TGG + tig0023943:75082-75101 Msa1412750:intron 40.0%
!! TACATGGCTGTGTTACTTCT+AGG + tig0023943:75116-75135 Msa1412750:intron 40.0%
TCTGCTGGAAGGATTGTTAT+TGG + tig0023943:75201-75220 Msa1412750:CDS 40.0%
TGGGAACAACATCTCCAAAT+AGG - tig0023943:75227-75246 None:intergenic 40.0%
AATAACTGTGCAGGAGAGAA+AGG + tig0023943:75379-75398 Msa1412750:intron 40.0%
TTTGATTATGCGATGGAAGG+TGG - tig0023943:75422-75441 None:intergenic 40.0%
AGATTTCATGATTCAGGGAG+GGG + tig0023943:75441-75460 Msa1412750:CDS 40.0%
TTTAATTGGATGCAGGGAAC+TGG + tig0023943:75570-75589 Msa1412750:intron 40.0%
AATGCCGGTCCTAATAGTAA+CGG + tig0023943:75858-75877 Msa1412750:CDS 40.0%
AGATGGGAAAATAGTCTCAC+CGG - tig0023943:75909-75928 None:intergenic 40.0%
GTCCCACGTTAAATGAGATA+TGG + tig0023943:76214-76233 Msa1412750:intron 40.0%
GGCCATATCTCATTTAACGT+GGG - tig0023943:76219-76238 None:intergenic 40.0%
AGGCCATATCTCATTTAACG+TGG - tig0023943:76220-76239 None:intergenic 40.0%
ACGTTAAATGAGATATGGCC+TGG + tig0023943:76219-76238 Msa1412750:intron 40.0%
CATGTTGTAGACTTCATGGT+TGG + tig0023943:76904-76923 Msa1412750:intron 40.0%
GACAATCGCCATGTTGTATT+TGG + tig0023943:76926-76945 Msa1412750:CDS 40.0%
TGGACATGTCATTGATGGAA+TGG + tig0023943:76946-76965 Msa1412750:CDS 40.0%
TTGATGGAATGGATGTTGTG+AGG + tig0023943:76957-76976 Msa1412750:CDS 40.0%
AAGAATGTACAGCACTTCAG+AGG - tig0023943:77081-77100 None:intergenic 40.0%
GGTAGTTCAATTCCTGTGTT+TGG + tig0023943:77155-77174 Msa1412750:three_prime_UTR 40.0%
AGCAATGACAATCCAAACAC+AGG - tig0023943:77170-77189 None:intergenic 40.0%
CAGAGTCAGAACCTTCTTTC+TGG + tig0023943:74366-74385 Msa1412750:CDS 45.0%
!! TTCTGGTTTCAATGCTGTCC+AGG + tig0023943:74383-74402 Msa1412750:CDS 45.0%
GCAAGCCAAAGTAACAAGCA+AGG + tig0023943:75149-75168 Msa1412750:CDS 45.0%
GTTATTGGAGGTGAATCTGC+TGG + tig0023943:75186-75205 Msa1412750:CDS 45.0%
! AATTTCCGAGCTTTGTGCAC+AGG + tig0023943:75258-75277 Msa1412750:CDS 45.0%
TGTGCAGGAGAGAAAGGATA+TGG + tig0023943:75385-75404 Msa1412750:intron 45.0%
ACTGGTGGAGTCAGTATCTA+TGG + tig0023943:75588-75607 Msa1412750:CDS 45.0%
TTCCTTGCAGTGAAGCATGT+TGG + tig0023943:75813-75832 Msa1412750:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG - tig0023943:75840-75859 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG + tig0023943:75843-75862 Msa1412750:CDS 45.0%
ACTGCCGTTACTATTAGGAC+CGG - tig0023943:75865-75884 None:intergenic 45.0%
AAGGGGAATCCTTCTGTGTT+TGG + tig0023943:75951-75970 Msa1412750:intron 45.0%
AGGGGAATCCTTCTGTGTTT+GGG + tig0023943:75952-75971 Msa1412750:intron 45.0%
CCTGTTTACCCAAACACAGA+AGG - tig0023943:75963-75982 None:intergenic 45.0%
CCTTCTGTGTTTGGGTAAAC+AGG + tig0023943:75960-75979 Msa1412750:intron 45.0%
TGTGAGGACACTTGAATCAC+AGG + tig0023943:76973-76992 Msa1412750:CDS 45.0%
GAGACAAGCAGCTACAACAA+TGG + tig0023943:76995-77014 Msa1412750:CDS 45.0%
TCTGGAGAACTTCCTCTAGA+TGG + tig0023943:77046-77065 Msa1412750:CDS 45.0%
AGGAGAGATCAACCATCTAG+AGG - tig0023943:77061-77080 None:intergenic 45.0%
TACAATGCAGTTAAGGAGGG+TGG + tig0023943:77113-77132 Msa1412750:three_prime_UTR 45.0%
! CAGTTAAGGAGGGTGGTTTT+GGG + tig0023943:77120-77139 Msa1412750:three_prime_UTR 45.0%
!! AGTTAAGGAGGGTGGTTTTG+GGG + tig0023943:77121-77140 Msa1412750:three_prime_UTR 45.0%
TTCGCTAAATGCCCTTTCAG+TGG - tig0023943:77217-77236 None:intergenic 45.0%
CAGGATATCATTACGCGGCT+AGG + tig0023943:74923-74942 Msa1412750:CDS 50.0%
TCATTACGCGGCTAGGCTTT+CGG + tig0023943:74930-74949 Msa1412750:CDS 50.0%
TTGGAGGTGAATCTGCTGGA+AGG + tig0023943:75190-75209 Msa1412750:CDS 50.0%
GCTTACCTGTGCACAAAGCT+CGG - tig0023943:75266-75285 None:intergenic 50.0%
AATTGGATGCAGGGAACTGG+TGG + tig0023943:75573-75592 Msa1412750:intron 50.0%
GGTGGAGTCAGTATCTATGG+TGG + tig0023943:75591-75610 Msa1412750:CDS 50.0%
GACCAACATGCTTCACTGCA+AGG - tig0023943:75818-75837 None:intergenic 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG + tig0023943:75833-75852 Msa1412750:CDS 50.0%
! GCAGTTAAGGAGGGTGGTTT+TGG + tig0023943:77119-77138 Msa1412750:three_prime_UTR 50.0%
AGCAGTACCAGAGCACACCT+TGG + tig0023943:74883-74902 Msa1412750:CDS 55.0%
ACTGCATCCAAGGTGTGCTC+TGG - tig0023943:74893-74912 None:intergenic 55.0%
GCAGTGAAGCATGTTGGTCC+TGG + tig0023943:75819-75838 Msa1412750:intron 55.0%
!!! TAAGGAGGGTGGTTTTGGGG+AGG + tig0023943:77124-77143 Msa1412750:three_prime_UTR 55.0%
CAGGGAGGGGACTTCACAGA+AGG + tig0023943:75454-75473 Msa1412750:CDS 60.0%
!!! GAGGGTGGTTTTGGGGAGGA+GGG + tig0023943:77128-77147 Msa1412750:three_prime_UTR 60.0%
!!! GTGGTTTTGGGGAGGAGGGA+GGG + tig0023943:77132-77151 Msa1412750:three_prime_UTR 60.0%
!!! TGGTTTTGGGGAGGAGGGAG+GGG + tig0023943:77133-77152 Msa1412750:three_prime_UTR 60.0%
!!! GGAGGGTGGTTTTGGGGAGG+AGG + tig0023943:77127-77146 Msa1412750:three_prime_UTR 65.0%
!!! GGTGGTTTTGGGGAGGAGGG+AGG + tig0023943:77131-77150 Msa1412750:three_prime_UTR 65.0%
!!! GGTTTTGGGGAGGAGGGAGG+GGG + tig0023943:77134-77153 Msa1412750:three_prime_UTR 65.0%
! GTGCGTGCGCGCGCACGTGC+TGG - tig0023943:76827-76846 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0023943 gene 74177 77394 74177 ID=Msa1412750;Name=Msa1412750
tig0023943 mRNA 74177 77394 74177 ID=Msa1412750-mRNA-1;Parent=Msa1412750;Name=Msa1412750-mRNA-1;_AED=0.10;_eAED=0.10;_QI=159|1|1|1|1|1|7|322|251
tig0023943 exon 74177 74404 74177 ID=Msa1412750-mRNA-1:exon:20739;Parent=Msa1412750-mRNA-1
tig0023943 exon 74862 75017 74862 ID=Msa1412750-mRNA-1:exon:20740;Parent=Msa1412750-mRNA-1
tig0023943 exon 75138 75279 75138 ID=Msa1412750-mRNA-1:exon:20741;Parent=Msa1412750-mRNA-1
tig0023943 exon 75392 75480 75392 ID=Msa1412750-mRNA-1:exon:20742;Parent=Msa1412750-mRNA-1
tig0023943 exon 75585 75639 75585 ID=Msa1412750-mRNA-1:exon:20743;Parent=Msa1412750-mRNA-1
tig0023943 exon 75823 75908 75823 ID=Msa1412750-mRNA-1:exon:20744;Parent=Msa1412750-mRNA-1
tig0023943 exon 76914 77394 76914 ID=Msa1412750-mRNA-1:exon:20745;Parent=Msa1412750-mRNA-1
tig0023943 five_prime_UTR 74177 74335 74177 ID=Msa1412750-mRNA-1:five_prime_utr;Parent=Msa1412750-mRNA-1
tig0023943 CDS 74336 74404 74336 ID=Msa1412750-mRNA-1:cds;Parent=Msa1412750-mRNA-1
tig0023943 CDS 74862 75017 74862 ID=Msa1412750-mRNA-1:cds;Parent=Msa1412750-mRNA-1
tig0023943 CDS 75138 75279 75138 ID=Msa1412750-mRNA-1:cds;Parent=Msa1412750-mRNA-1
tig0023943 CDS 75392 75480 75392 ID=Msa1412750-mRNA-1:cds;Parent=Msa1412750-mRNA-1
tig0023943 CDS 75585 75639 75585 ID=Msa1412750-mRNA-1:cds;Parent=Msa1412750-mRNA-1
tig0023943 CDS 75823 75908 75823 ID=Msa1412750-mRNA-1:cds;Parent=Msa1412750-mRNA-1
tig0023943 CDS 76914 77072 76914 ID=Msa1412750-mRNA-1:cds;Parent=Msa1412750-mRNA-1
tig0023943 three_prime_UTR 77073 77394 77073 ID=Msa1412750-mRNA-1:three_prime_utr;Parent=Msa1412750-mRNA-1
Gene Sequence

>Msa1412750

ATGGCATCTTTGTTCTCAACACAGTTGGTGCAGAGTCAGAACCTTCTTTCTGGTTTCAATGCTGTCCAGGGGAAGTCACATGTAGTCTGTAGCAGTACCAGAGCACACCTTGGATGCAGTAAATTGTCATCAGGATATCATTACGCGGCTAGGCTTTCGGTGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTACTAGTAGTGCTAGTGCTGCAGATCTGCAAGCCAAAGTAACAAGCAAGGTTTTCTTTGATGTAGTTATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAGAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTACTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATAGTAACGGCAGTCAATTTTTTATTTGCACTGTACCGACTTCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAATCACAGGAGACAAGCAGCTACAACAATGGTCCCTTGAAAACATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA

Protein sequence

>Msa1412750

MASLFSTQLVQSQNLLSGFNAVQGKSHVVCSSTRAHLGCSKLSSGYHYAARLSVSQQSKAKSITSRRITCTSSASAADLQAKVTSKVFFDVVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKDFMIQGGDFTEGNGTGGVSIYGGKFEDENFTLKHVGPGVLSMANAGPNSNGSQFFICTVPTSWLDNRHVVFGHVIDGMDVVRTLESQETSSYNNGPLKTCKIVNSGELPLDG*