AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0009210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0009210 MtrunA17_Chr1g0157681 97.692 130 3 0 1 130 1 130 4.61e-88 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0009210 AT1G30380.1 82.443 131 21 2 1 130 1 130 2.25e-73 215

Find 65 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCTTAACTGTAATATT+TGG 0.204969 1_1:-13424551 Msa0009210:three_prime_UTR
ATTGGTGTTGGTGTTGTTCT+TGG 0.264103 1_1:-13424686 Msa0009210:CDS
TCGAACTATTGAGTCACTTA+TGG 0.269676 1_1:+13424438 None:intergenic
AACATTGGTGCATTGTAAAA+AGG 0.282224 1_1:-13424656 Msa0009210:exon
ATCTTCCAGCAAACAACATT+AGG 0.298751 1_1:+13424846 None:intergenic
TTTCCCTTGCGCCTTGTCAT+AGG 0.324595 1_1:+13425897 None:intergenic
GCGCAAGGGAAAGGGTGCTT+TGG 0.345906 1_1:-13425886 Msa0009210:CDS
GTTCACTCTTGCTGATACTT+TGG 0.359682 1_1:-13424732 Msa0009210:CDS
AATCTCTTATCTCTAGGATT+AGG 0.364093 1_1:+13424300 Msa0009180:three_prime_UTR
TTTCATTTAGTTTGAACAAA+TGG 0.364851 1_1:-13426206 Msa0009210:exon
ATGATTGAATCGCATTGAAT+TGG 0.370102 1_1:+13424467 None:intergenic
TTGCAGACTGGTGACCCAGC+TGG 0.370604 1_1:-13424755 Msa0009210:CDS
CGCAAGGGAAAGGGTGCTTT+GGG 0.371284 1_1:-13425885 Msa0009210:CDS
ACCTTCTCCTATCCAGGGTT+TGG 0.377236 1_1:-13426128 Msa0009210:intron
TGTGCATAAACATTGTTTCC+TGG 0.377540 1_1:-13424345 Msa0009210:three_prime_UTR
ATGTTGTTTGCTGGAAGATT+TGG 0.379579 1_1:-13424842 Msa0009210:CDS
ATGCAGTAGCTGAAAGGTAT+TGG 0.381637 1_1:+13424407 None:intergenic
GGAGTTCGTTGTGACTTCAT+TGG 0.392047 1_1:-13425864 Msa0009210:CDS
TCTTCCAGCAAACAACATTA+GGG 0.393888 1_1:+13424847 None:intergenic
ACAACCCTAATGTTGTTTGC+TGG 0.398888 1_1:-13424851 Msa0009210:CDS
CCTTGCGCCTTGTCATAGGT+TGG 0.425942 1_1:+13425901 None:intergenic
TGCAGACTGGTGACCCAGCT+GGG 0.430536 1_1:-13424754 Msa0009210:CDS
TGCAGTAGCTGAAAGGTATT+GGG 0.433898 1_1:+13424408 None:intergenic
ACTCAAACCTTCTCCTATCC+AGG 0.437202 1_1:-13426134 Msa0009210:CDS
CTTGCGCCTTGTCATAGGTT+GGG 0.439768 1_1:+13425902 None:intergenic
ATTTGGAATCTCTTATCTCT+AGG 0.445532 1_1:+13424294 Msa0009180:three_prime_UTR
GGATGACTCGATTGTATCAC+TGG 0.446726 1_1:+13424488 None:intergenic
GATTGGCTCCTTCAGCAAAC+AGG 0.451019 1_1:-13424820 Msa0009210:CDS
ACAACTTTGCCTCAATTCAC+TGG 0.462189 1_1:-13426169 Msa0009210:CDS
GTTGCTTTCCTGTTTGCTGA+AGG 0.469707 1_1:+13424812 None:intergenic
GTGCATAAACATTGTTTCCT+GGG 0.471861 1_1:-13424344 Msa0009210:three_prime_UTR
TCAGCAAGAGTGAACCCAGC+TGG 0.486809 1_1:+13424740 None:intergenic
AGCAACAGCAGGACTAAAGC+TGG 0.487183 1_1:-13424795 Msa0009210:CDS
GTTTGCTGGAAGATTTGGAT+TGG 0.494741 1_1:-13424837 Msa0009210:CDS
AAGAAGTAAGCAGAATCTAA+TGG 0.501082 1_1:+13426316 None:intergenic
CTCTTATCTCTAGGATTAGG+AGG 0.502004 1_1:+13424303 Msa0009180:three_prime_UTR
TATGACAAGGCGCAAGGGAA+AGG 0.505007 1_1:-13425895 Msa0009210:CDS
ACTTTGGCCTGTGGAACTGT+TGG 0.509321 1_1:-13424716 Msa0009210:CDS
ATGACAAGGCGCAAGGGAAA+GGG 0.519777 1_1:-13425894 Msa0009210:CDS
CTTGCTGATACTTTGGCCTG+TGG 0.531365 1_1:-13424725 Msa0009210:CDS
GGAACTGTTGGACACATCAT+TGG 0.534067 1_1:-13424704 Msa0009210:CDS
GTTCTTGGTCTTAAGAACAT+TGG 0.536798 1_1:-13424671 Msa0009210:CDS
AGGGACTCAGGCTTGCAGAC+TGG 0.536809 1_1:-13424767 Msa0009210:CDS
CAGGACTAAAGCTGGAGACA+AGG 0.539368 1_1:-13424787 Msa0009210:CDS
ACCAAACCCTGGATAGGAGA+AGG 0.553964 1_1:+13426127 None:intergenic
AAGCTGGAGACAAGGGACTC+AGG 0.559360 1_1:-13424779 Msa0009210:CDS
TTACAGTTAAGAAATAGTAA+AGG 0.561952 1_1:+13424558 None:intergenic
CAGCAAGAGTGAACCCAGCT+GGG 0.567280 1_1:+13424741 None:intergenic
TTAATTACCAAACCCTGGAT+AGG 0.568947 1_1:+13426121 None:intergenic
CATTGGTTCATCAACTAATG+TGG 0.575024 1_1:-13425847 Msa0009210:intron
GATGTGTCCAACAGTTCCAC+AGG 0.576438 1_1:+13424709 None:intergenic
ATAGGAGAAGGTTTGAGTTG+TGG 0.576762 1_1:+13426139 None:intergenic
GGCACTATGCAGTAGCTGAA+AGG 0.591605 1_1:+13424401 None:intergenic
AGGACTAAAGCTGGAGACAA+GGG 0.595838 1_1:-13424786 Msa0009210:CDS
CTCAAACCTTCTCCTATCCA+GGG 0.595941 1_1:-13426133 Msa0009210:CDS
AGTAGTTAATTACCAAACCC+TGG 0.596372 1_1:+13426116 None:intergenic
CCAACCTATGACAAGGCGCA+AGG 0.600144 1_1:-13425901 Msa0009210:CDS
GGTCTAAGACCAGTGAATTG+AGG 0.606924 1_1:+13426160 None:intergenic
GTTGGACACATCATTGGTGT+TGG 0.612231 1_1:-13424698 Msa0009210:CDS
GCAAACAGGAAAGCAACAGC+AGG 0.614247 1_1:-13424806 Msa0009210:CDS
CAACCTATGACAAGGCGCAA+GGG 0.619501 1_1:-13425900 Msa0009210:CDS
ACAGAACTATATGACACAGT+AGG 0.643148 1_1:+13424380 Msa0009180:three_prime_UTR
TTGCTGCCCAACCTATGACA+AGG 0.674324 1_1:-13425908 Msa0009210:CDS
GATGACTCGATTGTATCACT+GGG 0.704301 1_1:+13424489 None:intergenic
ACATGTTGGACAGATTATGG+TGG 0.710941 1_1:-13424879 Msa0009210:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGTTTTATAATTCATA+AGG + chr1_1:13424618-13424637 None:intergenic 10.0%
!!! TTTAAGTTTTATAATTCATA+AGG + chr1_1:13424618-13424637 None:intergenic 10.0%
!!! GTTTTTTTATTTTTATGTGA+AGG - chr1_1:13424703-13424722 Msa0009210:CDS 15.0%
!!! AGACTATTTTGATTAAAATT+GGG - chr1_1:13425528-13425547 Msa0009210:intron 15.0%
!!! TTTGAAATTTTGATTCATTA+AGG - chr1_1:13425567-13425586 Msa0009210:intron 15.0%
!!! TTGAAATTTTGATTCATTAA+GGG - chr1_1:13425568-13425587 Msa0009210:intron 15.0%
!!! ATTATTACCTCTATTTTATT+GGG - chr1_1:13425625-13425644 Msa0009210:intron 15.0%
!! TATTTCTTAACTGTAATATT+TGG - chr1_1:13426083-13426102 Msa0009210:intron 15.0%
!!! GTTTTTTTATTTTTATGTGA+AGG - chr1_1:13424703-13424722 Msa0009210:CDS 15.0%
!!! AGACTATTTTGATTAAAATT+GGG - chr1_1:13425528-13425547 Msa0009210:intron 15.0%
!!! TTTGAAATTTTGATTCATTA+AGG - chr1_1:13425567-13425586 Msa0009210:intron 15.0%
!!! TTGAAATTTTGATTCATTAA+GGG - chr1_1:13425568-13425587 Msa0009210:intron 15.0%
!!! ATTATTACCTCTATTTTATT+GGG - chr1_1:13425625-13425644 Msa0009210:intron 15.0%
!! TATTTCTTAACTGTAATATT+TGG - chr1_1:13426083-13426102 Msa0009210:intron 15.0%
!!! TTTCATTTAGTTTGAACAAA+TGG - chr1_1:13424428-13424447 Msa0009210:three_prime_UTR 20.0%
!! TTGAATAAAAACATTGGAAT+TGG + chr1_1:13424839-13424858 None:intergenic 20.0%
!! TCACTATTGAATAAAAACAT+TGG + chr1_1:13424845-13424864 None:intergenic 20.0%
!!! TGTAGTTTTTTTTTTAGTAG+TGG - chr1_1:13424990-13425009 Msa0009210:intron 20.0%
!!! TTTTTTTTTTAGTAGTGGTT+GGG - chr1_1:13424995-13425014 Msa0009210:intron 20.0%
!! TATGAATAAAAACATTGGAA+CGG + chr1_1:13425030-13425049 None:intergenic 20.0%
!!! GAGACTATTTTGATTAAAAT+TGG - chr1_1:13425527-13425546 Msa0009210:intron 20.0%
!!! AATAGAGGTAATAATCATTT+TGG + chr1_1:13425620-13425639 None:intergenic 20.0%
!!! GATTATTACCTCTATTTTAT+TGG - chr1_1:13425624-13425643 Msa0009210:intron 20.0%
!! TTACAGTTAAGAAATAGTAA+AGG + chr1_1:13426079-13426098 None:intergenic 20.0%
!!! TTTCATTTAGTTTGAACAAA+TGG - chr1_1:13424428-13424447 Msa0009210:three_prime_UTR 20.0%
!! TTGAATAAAAACATTGGAAT+TGG + chr1_1:13424839-13424858 None:intergenic 20.0%
!! TCACTATTGAATAAAAACAT+TGG + chr1_1:13424845-13424864 None:intergenic 20.0%
!!! TGTAGTTTTTTTTTTAGTAG+TGG - chr1_1:13424990-13425009 Msa0009210:intron 20.0%
!!! TTTTTTTTTTAGTAGTGGTT+GGG - chr1_1:13424995-13425014 Msa0009210:intron 20.0%
!! TATGAATAAAAACATTGGAA+CGG + chr1_1:13425030-13425049 None:intergenic 20.0%
!!! GAGACTATTTTGATTAAAAT+TGG - chr1_1:13425527-13425546 Msa0009210:intron 20.0%
!!! AATAGAGGTAATAATCATTT+TGG + chr1_1:13425620-13425639 None:intergenic 20.0%
!!! GATTATTACCTCTATTTTAT+TGG - chr1_1:13425624-13425643 Msa0009210:intron 20.0%
!! TTACAGTTAAGAAATAGTAA+AGG + chr1_1:13426079-13426098 None:intergenic 20.0%
! TTTATTCAATAGTGAGTGTT+TGG - chr1_1:13424850-13424869 Msa0009210:CDS 25.0%
!! TGTAACTTTTGTCAAAATCA+TGG + chr1_1:13424904-13424923 None:intergenic 25.0%
! AAAAAAACTACACACATGTT+TGG + chr1_1:13424982-13425001 None:intergenic 25.0%
!!! GTTTTTTTTTTAGTAGTGGT+TGG - chr1_1:13424994-13425013 Msa0009210:intron 25.0%
! ATGAATAAAAACATTGGAAC+GGG + chr1_1:13425029-13425048 None:intergenic 25.0%
!! TGTAACTTTTGTCAAAATCA+TGG + chr1_1:13424904-13424923 None:intergenic 25.0%
! TTAACTTCAATTAGTGAGAA+TGG - chr1_1:13425664-13425683 Msa0009210:intron 25.0%
! TTTATTCAATAGTGAGTGTT+TGG - chr1_1:13424850-13424869 Msa0009210:CDS 25.0%
!! TGTAACTTTTGTCAAAATCA+TGG + chr1_1:13424904-13424923 None:intergenic 25.0%
! AAAAAAACTACACACATGTT+TGG + chr1_1:13424982-13425001 None:intergenic 25.0%
!!! GTTTTTTTTTTAGTAGTGGT+TGG - chr1_1:13424994-13425013 Msa0009210:intron 25.0%
! ATGAATAAAAACATTGGAAC+GGG + chr1_1:13425029-13425048 None:intergenic 25.0%
!! TGTAACTTTTGTCAAAATCA+TGG + chr1_1:13424904-13424923 None:intergenic 25.0%
! TTAACTTCAATTAGTGAGAA+TGG - chr1_1:13425664-13425683 Msa0009210:intron 25.0%
AAGAAGTAAGCAGAATCTAA+TGG + chr1_1:13424321-13424340 Msa0009180:three_prime_UTR 30.0%
TGAATAAAAACATTGGAACG+GGG + chr1_1:13425028-13425047 None:intergenic 30.0%
CGCACTATGAATAAAAACAT+TGG + chr1_1:13425035-13425054 None:intergenic 30.0%
! TTTTATTCATAGTGCGTGTT+TGG - chr1_1:13425039-13425058 Msa0009210:intron 30.0%
TGCATAAAATATGCAAGGTT+CGG + chr1_1:13425218-13425237 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr1_1:13425223-13425242 None:intergenic 30.0%
! TGTGGAAGTAATAGTCATTT+TGG - chr1_1:13425286-13425305 Msa0009210:intron 30.0%
TGGTGTCTTAATATATAACG+AGG - chr1_1:13425306-13425325 Msa0009210:intron 30.0%
ATAGTGTCCCAATAAAATAG+AGG + chr1_1:13425635-13425654 None:intergenic 30.0%
! TATGATTGACTTTGACATGT+TGG - chr1_1:13425741-13425760 Msa0009210:intron 30.0%
AACATTGGTGCATTGTAAAA+AGG - chr1_1:13425978-13425997 Msa0009210:intron 30.0%
ATGATTGAATCGCATTGAAT+TGG + chr1_1:13426170-13426189 None:intergenic 30.0%
AAGAAGTAAGCAGAATCTAA+TGG + chr1_1:13424321-13424340 Msa0009180:three_prime_UTR 30.0%
TGAATAAAAACATTGGAACG+GGG + chr1_1:13425028-13425047 None:intergenic 30.0%
CGCACTATGAATAAAAACAT+TGG + chr1_1:13425035-13425054 None:intergenic 30.0%
! TTTTATTCATAGTGCGTGTT+TGG - chr1_1:13425039-13425058 Msa0009210:intron 30.0%
TGCATAAAATATGCAAGGTT+CGG + chr1_1:13425218-13425237 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + chr1_1:13425223-13425242 None:intergenic 30.0%
! TGTGGAAGTAATAGTCATTT+TGG - chr1_1:13425286-13425305 Msa0009210:intron 30.0%
TGGTGTCTTAATATATAACG+AGG - chr1_1:13425306-13425325 Msa0009210:intron 30.0%
ATAGTGTCCCAATAAAATAG+AGG + chr1_1:13425635-13425654 None:intergenic 30.0%
! TATGATTGACTTTGACATGT+TGG - chr1_1:13425741-13425760 Msa0009210:intron 30.0%
AACATTGGTGCATTGTAAAA+AGG - chr1_1:13425978-13425997 Msa0009210:intron 30.0%
ATGATTGAATCGCATTGAAT+TGG + chr1_1:13426170-13426189 None:intergenic 30.0%
! TTCACACACACAGATTTTGA+AGG + chr1_1:13424369-13424388 Msa0009180:three_prime_UTR 35.0%
TTAATTACCAAACCCTGGAT+AGG + chr1_1:13424516-13424535 None:intergenic 35.0%
AGTAGTTAATTACCAAACCC+TGG + chr1_1:13424521-13424540 None:intergenic 35.0%
!! CATTGGTTCATCAACTAATG+TGG - chr1_1:13424787-13424806 Msa0009210:CDS 35.0%
ATAGTGAGTGTTTGGATCAA+CGG - chr1_1:13424858-13424877 Msa0009210:CDS 35.0%
AAAACTGCACACATCATGTT+TGG + chr1_1:13425171-13425190 None:intergenic 35.0%
!!! TGTGTGCAGTTTTTTAGTAG+TGG - chr1_1:13425178-13425197 Msa0009210:intron 35.0%
!!! TGCAGTTTTTTAGTAGTGGT+TGG - chr1_1:13425182-13425201 Msa0009210:intron 35.0%
!!! GCAGTTTTTTAGTAGTGGTT+GGG - chr1_1:13425183-13425202 Msa0009210:intron 35.0%
CATAAAATATGCAAGGTTCG+GGG + chr1_1:13425216-13425235 None:intergenic 35.0%
GCATAAAATATGCAAGGTTC+GGG + chr1_1:13425217-13425236 None:intergenic 35.0%
GGACATGTGTACAATTATTG+TGG - chr1_1:13425268-13425287 Msa0009210:intron 35.0%
TTGACATGTTGGACAGATTA+TGG - chr1_1:13425752-13425771 Msa0009210:intron 35.0%
TCTTCCAGCAAACAACATTA+GGG + chr1_1:13425790-13425809 None:intergenic 35.0%
ATCTTCCAGCAAACAACATT+AGG + chr1_1:13425791-13425810 None:intergenic 35.0%
! ATGTTGTTTGCTGGAAGATT+TGG - chr1_1:13425792-13425811 Msa0009210:intron 35.0%
!! GTTCTTGGTCTTAAGAACAT+TGG - chr1_1:13425963-13425982 Msa0009210:intron 35.0%
TCGAACTATTGAGTCACTTA+TGG + chr1_1:13426199-13426218 None:intergenic 35.0%
ACAGAACTATATGACACAGT+AGG + chr1_1:13426257-13426276 None:intergenic 35.0%
TGTGCATAAACATTGTTTCC+TGG - chr1_1:13426289-13426308 Msa0009210:five_prime_UTR 35.0%
GTGCATAAACATTGTTTCCT+GGG - chr1_1:13426290-13426309 Msa0009210:five_prime_UTR 35.0%
!!! AATGCTTTTTTAATCTGCCC+AGG + chr1_1:13426310-13426329 None:intergenic 35.0%
! TTCACACACACAGATTTTGA+AGG + chr1_1:13424369-13424388 Msa0009180:three_prime_UTR 35.0%
TTAATTACCAAACCCTGGAT+AGG + chr1_1:13424516-13424535 None:intergenic 35.0%
AGTAGTTAATTACCAAACCC+TGG + chr1_1:13424521-13424540 None:intergenic 35.0%
!! CATTGGTTCATCAACTAATG+TGG - chr1_1:13424787-13424806 Msa0009210:CDS 35.0%
ATAGTGAGTGTTTGGATCAA+CGG - chr1_1:13424858-13424877 Msa0009210:CDS 35.0%
AAAACTGCACACATCATGTT+TGG + chr1_1:13425171-13425190 None:intergenic 35.0%
!!! TGTGTGCAGTTTTTTAGTAG+TGG - chr1_1:13425178-13425197 Msa0009210:intron 35.0%
!!! TGCAGTTTTTTAGTAGTGGT+TGG - chr1_1:13425182-13425201 Msa0009210:intron 35.0%
!!! GCAGTTTTTTAGTAGTGGTT+GGG - chr1_1:13425183-13425202 Msa0009210:intron 35.0%
CATAAAATATGCAAGGTTCG+GGG + chr1_1:13425216-13425235 None:intergenic 35.0%
GCATAAAATATGCAAGGTTC+GGG + chr1_1:13425217-13425236 None:intergenic 35.0%
GGACATGTGTACAATTATTG+TGG - chr1_1:13425268-13425287 Msa0009210:intron 35.0%
TTGACATGTTGGACAGATTA+TGG - chr1_1:13425752-13425771 Msa0009210:intron 35.0%
TCTTCCAGCAAACAACATTA+GGG + chr1_1:13425790-13425809 None:intergenic 35.0%
ATCTTCCAGCAAACAACATT+AGG + chr1_1:13425791-13425810 None:intergenic 35.0%
! ATGTTGTTTGCTGGAAGATT+TGG - chr1_1:13425792-13425811 Msa0009210:intron 35.0%
!! GTTCTTGGTCTTAAGAACAT+TGG - chr1_1:13425963-13425982 Msa0009210:intron 35.0%
TCGAACTATTGAGTCACTTA+TGG + chr1_1:13426199-13426218 None:intergenic 35.0%
ACAGAACTATATGACACAGT+AGG + chr1_1:13426257-13426276 None:intergenic 35.0%
TGTGCATAAACATTGTTTCC+TGG - chr1_1:13426289-13426308 Msa0009210:five_prime_UTR 35.0%
GTGCATAAACATTGTTTCCT+GGG - chr1_1:13426290-13426309 Msa0009210:five_prime_UTR 35.0%
!!! AATGCTTTTTTAATCTGCCC+AGG + chr1_1:13426310-13426329 None:intergenic 35.0%
ACAACTTTGCCTCAATTCAC+TGG - chr1_1:13424465-13424484 Msa0009210:three_prime_UTR 40.0%
!! ATAGGAGAAGGTTTGAGTTG+TGG + chr1_1:13424498-13424517 None:intergenic 40.0%
ATAGTGCGTGTTTGGATCAA+TGG - chr1_1:13425047-13425066 Msa0009210:intron 40.0%
ACATGTTGGACAGATTATGG+TGG - chr1_1:13425755-13425774 Msa0009210:intron 40.0%
! ACAACCCTAATGTTGTTTGC+TGG - chr1_1:13425783-13425802 Msa0009210:intron 40.0%
! GTTTGCTGGAAGATTTGGAT+TGG - chr1_1:13425797-13425816 Msa0009210:intron 40.0%
GTTCACTCTTGCTGATACTT+TGG - chr1_1:13425902-13425921 Msa0009210:CDS 40.0%
!! ATTGGTGTTGGTGTTGTTCT+TGG - chr1_1:13425948-13425967 Msa0009210:intron 40.0%
GATGACTCGATTGTATCACT+GGG + chr1_1:13426148-13426167 None:intergenic 40.0%
!! TGCAGTAGCTGAAAGGTATT+GGG + chr1_1:13426229-13426248 None:intergenic 40.0%
! ATGCAGTAGCTGAAAGGTAT+TGG + chr1_1:13426230-13426249 None:intergenic 40.0%
ACAACTTTGCCTCAATTCAC+TGG - chr1_1:13424465-13424484 Msa0009210:three_prime_UTR 40.0%
!! ATAGGAGAAGGTTTGAGTTG+TGG + chr1_1:13424498-13424517 None:intergenic 40.0%
ATAGTGCGTGTTTGGATCAA+TGG - chr1_1:13425047-13425066 Msa0009210:intron 40.0%
ACATGTTGGACAGATTATGG+TGG - chr1_1:13425755-13425774 Msa0009210:intron 40.0%
! ACAACCCTAATGTTGTTTGC+TGG - chr1_1:13425783-13425802 Msa0009210:intron 40.0%
! GTTTGCTGGAAGATTTGGAT+TGG - chr1_1:13425797-13425816 Msa0009210:intron 40.0%
GTTCACTCTTGCTGATACTT+TGG - chr1_1:13425902-13425921 Msa0009210:CDS 40.0%
!! ATTGGTGTTGGTGTTGTTCT+TGG - chr1_1:13425948-13425967 Msa0009210:intron 40.0%
GATGACTCGATTGTATCACT+GGG + chr1_1:13426148-13426167 None:intergenic 40.0%
!! TGCAGTAGCTGAAAGGTATT+GGG + chr1_1:13426229-13426248 None:intergenic 40.0%
! ATGCAGTAGCTGAAAGGTAT+TGG + chr1_1:13426230-13426249 None:intergenic 40.0%
! GGTCTAAGACCAGTGAATTG+AGG + chr1_1:13424477-13424496 None:intergenic 45.0%
ACTCAAACCTTCTCCTATCC+AGG - chr1_1:13424500-13424519 Msa0009210:three_prime_UTR 45.0%
CTCAAACCTTCTCCTATCCA+GGG - chr1_1:13424501-13424520 Msa0009210:three_prime_UTR 45.0%
GGAGTTCGTTGTGACTTCAT+TGG - chr1_1:13424770-13424789 Msa0009210:CDS 45.0%
TGAGCTTAGCTCAGTTGGTT+TGG + chr1_1:13425245-13425264 None:intergenic 45.0%
! GTTGCTTTCCTGTTTGCTGA+AGG + chr1_1:13425825-13425844 None:intergenic 45.0%
AGGACTAAAGCTGGAGACAA+GGG - chr1_1:13425848-13425867 Msa0009210:CDS 45.0%
GGAACTGTTGGACACATCAT+TGG - chr1_1:13425930-13425949 Msa0009210:intron 45.0%
GTTGGACACATCATTGGTGT+TGG - chr1_1:13425936-13425955 Msa0009210:intron 45.0%
GGATGACTCGATTGTATCAC+TGG + chr1_1:13426149-13426168 None:intergenic 45.0%
! GGTCTAAGACCAGTGAATTG+AGG + chr1_1:13424477-13424496 None:intergenic 45.0%
ACTCAAACCTTCTCCTATCC+AGG - chr1_1:13424500-13424519 Msa0009210:three_prime_UTR 45.0%
CTCAAACCTTCTCCTATCCA+GGG - chr1_1:13424501-13424520 Msa0009210:three_prime_UTR 45.0%
GGAGTTCGTTGTGACTTCAT+TGG - chr1_1:13424770-13424789 Msa0009210:CDS 45.0%
TGAGCTTAGCTCAGTTGGTT+TGG + chr1_1:13425245-13425264 None:intergenic 45.0%
! GTTGCTTTCCTGTTTGCTGA+AGG + chr1_1:13425825-13425844 None:intergenic 45.0%
AGGACTAAAGCTGGAGACAA+GGG - chr1_1:13425848-13425867 Msa0009210:CDS 45.0%
GGAACTGTTGGACACATCAT+TGG - chr1_1:13425930-13425949 Msa0009210:intron 45.0%
GTTGGACACATCATTGGTGT+TGG - chr1_1:13425936-13425955 Msa0009210:intron 45.0%
GGATGACTCGATTGTATCAC+TGG + chr1_1:13426149-13426168 None:intergenic 45.0%
!! AATTTAAATATATATTATGA+AGG + chr1_1:13424654-13424673 None:intergenic 5.0%
!!! CATAATATATATTTAAATTT+TGG - chr1_1:13424655-13424674 Msa0009210:exon 5.0%
!! AATTTAAATATATATTATGA+AGG + chr1_1:13424654-13424673 None:intergenic 5.0%
!!! CATAATATATATTTAAATTT+TGG - chr1_1:13424655-13424674 Msa0009210:exon 5.0%
ACCTTCTCCTATCCAGGGTT+TGG - chr1_1:13424506-13424525 Msa0009210:three_prime_UTR 50.0%
ACCAAACCCTGGATAGGAGA+AGG + chr1_1:13424510-13424529 None:intergenic 50.0%
TTGCTGCCCAACCTATGACA+AGG - chr1_1:13424726-13424745 Msa0009210:CDS 50.0%
CTTGCGCCTTGTCATAGGTT+GGG + chr1_1:13424735-13424754 None:intergenic 50.0%
CAACCTATGACAAGGCGCAA+GGG - chr1_1:13424734-13424753 Msa0009210:CDS 50.0%
TTTCCCTTGCGCCTTGTCAT+AGG + chr1_1:13424740-13424759 None:intergenic 50.0%
TATGACAAGGCGCAAGGGAA+AGG - chr1_1:13424739-13424758 Msa0009210:CDS 50.0%
ATGACAAGGCGCAAGGGAAA+GGG - chr1_1:13424740-13424759 Msa0009210:CDS 50.0%
! GATTGGCTCCTTCAGCAAAC+AGG - chr1_1:13425814-13425833 Msa0009210:intron 50.0%
GCAAACAGGAAAGCAACAGC+AGG - chr1_1:13425828-13425847 Msa0009210:intron 50.0%
AGCAACAGCAGGACTAAAGC+TGG - chr1_1:13425839-13425858 Msa0009210:intron 50.0%
CAGGACTAAAGCTGGAGACA+AGG - chr1_1:13425847-13425866 Msa0009210:intron 50.0%
CTTGCTGATACTTTGGCCTG+TGG - chr1_1:13425909-13425928 Msa0009210:CDS 50.0%
ACTTTGGCCTGTGGAACTGT+TGG - chr1_1:13425918-13425937 Msa0009210:intron 50.0%
GATGTGTCCAACAGTTCCAC+AGG + chr1_1:13425928-13425947 None:intergenic 50.0%
GGCACTATGCAGTAGCTGAA+AGG + chr1_1:13426236-13426255 None:intergenic 50.0%
ACCTTCTCCTATCCAGGGTT+TGG - chr1_1:13424506-13424525 Msa0009210:three_prime_UTR 50.0%
ACCAAACCCTGGATAGGAGA+AGG + chr1_1:13424510-13424529 None:intergenic 50.0%
TTGCTGCCCAACCTATGACA+AGG - chr1_1:13424726-13424745 Msa0009210:CDS 50.0%
CTTGCGCCTTGTCATAGGTT+GGG + chr1_1:13424735-13424754 None:intergenic 50.0%
CAACCTATGACAAGGCGCAA+GGG - chr1_1:13424734-13424753 Msa0009210:CDS 50.0%
TTTCCCTTGCGCCTTGTCAT+AGG + chr1_1:13424740-13424759 None:intergenic 50.0%
TATGACAAGGCGCAAGGGAA+AGG - chr1_1:13424739-13424758 Msa0009210:CDS 50.0%
ATGACAAGGCGCAAGGGAAA+GGG - chr1_1:13424740-13424759 Msa0009210:CDS 50.0%
! GATTGGCTCCTTCAGCAAAC+AGG - chr1_1:13425814-13425833 Msa0009210:intron 50.0%
GCAAACAGGAAAGCAACAGC+AGG - chr1_1:13425828-13425847 Msa0009210:intron 50.0%
AGCAACAGCAGGACTAAAGC+TGG - chr1_1:13425839-13425858 Msa0009210:intron 50.0%
CAGGACTAAAGCTGGAGACA+AGG - chr1_1:13425847-13425866 Msa0009210:intron 50.0%
CTTGCTGATACTTTGGCCTG+TGG - chr1_1:13425909-13425928 Msa0009210:CDS 50.0%
ACTTTGGCCTGTGGAACTGT+TGG - chr1_1:13425918-13425937 Msa0009210:intron 50.0%
GATGTGTCCAACAGTTCCAC+AGG + chr1_1:13425928-13425947 None:intergenic 50.0%
GGCACTATGCAGTAGCTGAA+AGG + chr1_1:13426236-13426255 None:intergenic 50.0%
CCTTGCGCCTTGTCATAGGT+TGG + chr1_1:13424736-13424755 None:intergenic 55.0%
CCAACCTATGACAAGGCGCA+AGG - chr1_1:13424733-13424752 Msa0009210:CDS 55.0%
!! CGCAAGGGAAAGGGTGCTTT+GGG - chr1_1:13424749-13424768 Msa0009210:CDS 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr1_1:13425250-13425269 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr1_1:13425247-13425266 Msa0009210:intron 55.0%
AAGCTGGAGACAAGGGACTC+AGG - chr1_1:13425855-13425874 Msa0009210:CDS 55.0%
CAGCAAGAGTGAACCCAGCT+GGG + chr1_1:13425896-13425915 None:intergenic 55.0%
TCAGCAAGAGTGAACCCAGC+TGG + chr1_1:13425897-13425916 None:intergenic 55.0%
CCTTGCGCCTTGTCATAGGT+TGG + chr1_1:13424736-13424755 None:intergenic 55.0%
CCAACCTATGACAAGGCGCA+AGG - chr1_1:13424733-13424752 Msa0009210:CDS 55.0%
!! CGCAAGGGAAAGGGTGCTTT+GGG - chr1_1:13424749-13424768 Msa0009210:CDS 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr1_1:13425250-13425269 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr1_1:13425247-13425266 Msa0009210:intron 55.0%
AAGCTGGAGACAAGGGACTC+AGG - chr1_1:13425855-13425874 Msa0009210:CDS 55.0%
CAGCAAGAGTGAACCCAGCT+GGG + chr1_1:13425896-13425915 None:intergenic 55.0%
TCAGCAAGAGTGAACCCAGC+TGG + chr1_1:13425897-13425916 None:intergenic 55.0%
!! GCGCAAGGGAAAGGGTGCTT+TGG - chr1_1:13424748-13424767 Msa0009210:CDS 60.0%
AGGGACTCAGGCTTGCAGAC+TGG - chr1_1:13425867-13425886 Msa0009210:CDS 60.0%
TTGCAGACTGGTGACCCAGC+TGG - chr1_1:13425879-13425898 Msa0009210:CDS 60.0%
TGCAGACTGGTGACCCAGCT+GGG - chr1_1:13425880-13425899 Msa0009210:CDS 60.0%
!! GCGCAAGGGAAAGGGTGCTT+TGG - chr1_1:13424748-13424767 Msa0009210:CDS 60.0%
AGGGACTCAGGCTTGCAGAC+TGG - chr1_1:13425867-13425886 Msa0009210:CDS 60.0%
TTGCAGACTGGTGACCCAGC+TGG - chr1_1:13425879-13425898 Msa0009210:CDS 60.0%
TGCAGACTGGTGACCCAGCT+GGG - chr1_1:13425880-13425899 Msa0009210:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 13424308 13426348 13424308 ID=Msa0009210;Name=Msa0009210
chr1_1 mRNA 13424308 13426348 13424308 ID=Msa0009210-mRNA-1;Parent=Msa0009210;Name=Msa0009210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139|1|1|1|1|1|3|353|130
chr1_1 exon 13424308 13424888 13424308 ID=Msa0009210-mRNA-1:exon:5074;Parent=Msa0009210-mRNA-1
chr1_1 exon 13425848 13425931 13425848 ID=Msa0009210-mRNA-1:exon:5073;Parent=Msa0009210-mRNA-1
chr1_1 exon 13426129 13426348 13426129 ID=Msa0009210-mRNA-1:exon:5072;Parent=Msa0009210-mRNA-1
chr1_1 five_prime_UTR 13426210 13426348 13426210 ID=Msa0009210-mRNA-1:five_prime_utr;Parent=Msa0009210-mRNA-1
chr1_1 CDS 13426129 13426209 13426129 ID=Msa0009210-mRNA-1:cds;Parent=Msa0009210-mRNA-1
chr1_1 CDS 13425848 13425931 13425848 ID=Msa0009210-mRNA-1:cds;Parent=Msa0009210-mRNA-1
chr1_1 CDS 13424661 13424888 13424661 ID=Msa0009210-mRNA-1:cds;Parent=Msa0009210-mRNA-1
chr1_1 three_prime_UTR 13424308 13424660 13424308 ID=Msa0009210-mRNA-1:three_prime_utr;Parent=Msa0009210-mRNA-1
Gene Sequence

>Msa0009210

ATGGCAACTTCTATGATGACAACTTTGCCTCAATTCACTGGTCTTAGACCACAACTCAAACCTTCTCCTATCCAGGGTTTGGTTGCTGCCCAACCTATGACAAGGCGCAAGGGAAAGGGTGCTTTGGGAGTTCGTTGTGACTTCATTGGTTCATCAACTAATGTGATTATGGTGGCATCTACAACCCTAATGTTGTTTGCTGGAAGATTTGGATTGGCTCCTTCAGCAAACAGGAAAGCAACAGCAGGACTAAAGCTGGAGACAAGGGACTCAGGCTTGCAGACTGGTGACCCAGCTGGGTTCACTCTTGCTGATACTTTGGCCTGTGGAACTGTTGGACACATCATTGGTGTTGGTGTTGTTCTTGGTCTTAAGAACATTGGTGCATTGTAA

Protein sequence

>Msa0009210

MATSMMTTLPQFTGLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRCDFIGSSTNVIMVASTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACGTVGHIIGVGVVLGLKNIGAL*