AlfalfaGEDB | Msa0748890

M. sativa cultivar zhongmu-4 / Msa0748890

KEGG: K19032
GO: -
PFAM: PF04839.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0748890	sp\|P82412\|RRP3_SPIOL	88.421	95	11	0	81	175	85	179	2.17e-58	183

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0748890	B7FMM7	89.714	175	4	4	1	175	1	161	8.57e-102	299

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0748890	0.844679	6.510914e-59	-8.615850e-47
Msa0001420	Msa0748890	0.857703	1.362613e-62	-8.615850e-47
Msa0001510	Msa0748890	0.867953	9.352127e-66	-8.615850e-47
Msa0001540	Msa0748890	0.901765	1.924112e-78	-8.615850e-47
Msa0002060	Msa0748890	0.863436	2.492540e-64	-8.615850e-47
Msa0002690	Msa0748890	0.829011	6.533955e-55	-8.615850e-47
Msa0002700	Msa0748890	0.827739	1.324631e-54	-8.615850e-47
Msa0003370	Msa0748890	0.813382	2.633286e-51	-8.615850e-47
Msa0004180	Msa0748890	0.839768	1.300098e-57	-8.615850e-47
Msa0006580	Msa0748890	0.828097	1.086096e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0748890	MtrunA17_Chr6g0487251	89.714	175	4	4	1	175	1	161	1.65e-105	299

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0748890	AT1G68590.1	54.945	182	57	6	1	175	2	165	4.34e-56	174
Msa0748890	AT1G68590.2	83.146	89	15	0	87	175	74	162	1.22e-54	171
Msa0748890	AT5G15760.1	68.519	108	33	1	68	174	76	183	6.16e-51	162

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Find 49 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTTGTGGCAGCAGAGCGG+CGG	0.660943	5_2:+2272259	Msa0748890:CDS
ACGAGTCTTGGTTTGTCTGT+TGG	0.451057	5_2:-2272034	None:intergenic
AGAACAACAATAACATTAAA+AGG	0.282391	5_2:-2272353	None:intergenic
AGAGAGAGAACCTGAGATTG+AGG	0.570056	5_2:-2270662	None:intergenic
AGAGGAATGGTTCCATGGCC+AGG	0.528465	5_2:-2272112	None:intergenic
AGATGCTTGGGAAGAACTCA+AGG	0.585963	5_2:+2272162	Msa0748890:CDS
AGTTGCTAGAGAGTAAGCCT+TGG	0.524129	5_2:+2272185	Msa0748890:CDS
ATATATATGTTTAGAATGTC+TGG	0.437416	5_2:-2272620	None:intergenic
ATCAATTTGTGGCAGCAGAG+CGG	0.648603	5_2:+2272256	Msa0748890:CDS
ATGAACTTCAACACGAGTCT+TGG	0.461392	5_2:-2272046	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAGGTTGTTGTAAAAAG+AGG	-	chr5_2:2270506-2270525	None:intergenic	30.0%
TCAGTGTGAATGTTTAAAAG+GGG	+	chr5_2:2270775-2270794	Msa0748890:intron	30.0%
CAATATCATATGTGTAAGTC+TGG	-	chr5_2:2271047-2271066	None:intergenic	30.0%
TGTTTGACCTTCAAAACATT+TGG	+	chr5_2:2271255-2271274	Msa0748890:intron	30.0%
AAGTGTAGAAGATTAGAAGT+AGG	+	chr5_2:2271328-2271347	Msa0748890:intron	30.0%
GACTAATACACAAGTTTGAA+AGG	+	chr5_2:2271480-2271499	Msa0748890:intron	30.0%
GTACCTTTAGGTAAAACTTA+AGG	+	chr5_2:2271503-2271522	Msa0748890:intron	30.0%
CATATCAACTGACATAGAAA+TGG	-	chr5_2:2271902-2271921	None:intergenic	30.0%
TCACATTTCACATACAAACA+CGG	-	chr5_2:2272508-2272527	None:intergenic	30.0%
GAAAAGGTTGTTGTAAAAAG+AGG	-	chr5_2:2270506-2270525	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	2270317	2272683	2270317	ID=Msa0748890;Name=Msa0748890
chr5_2	mRNA	2270317	2272683	2270317	ID=Msa0748890-mRNA-1;Parent=Msa0748890;Name=Msa0748890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=114\|1\|1\|1\|1\|1\|2\|386\|175
chr5_2	exon	2270317	2270673	2270317	ID=Msa0748890-mRNA-1:exon:620;Parent=Msa0748890-mRNA-1
chr5_2	exon	2272013	2272683	2272013	ID=Msa0748890-mRNA-1:exon:621;Parent=Msa0748890-mRNA-1
chr5_2	five_prime_UTR	2270317	2270430	2270317	ID=Msa0748890-mRNA-1:five_prime_utr;Parent=Msa0748890-mRNA-1
chr5_2	CDS	2270431	2270673	2270431	ID=Msa0748890-mRNA-1:cds;Parent=Msa0748890-mRNA-1
chr5_2	CDS	2272013	2272297	2272013	ID=Msa0748890-mRNA-1:cds;Parent=Msa0748890-mRNA-1
chr5_2	three_prime_UTR	2272298	2272683	2272298	ID=Msa0748890-mRNA-1:three_prime_utr;Parent=Msa0748890-mRNA-1

Gene Sequence

>Msa0748890

ATGAACATGTTAGCATCATCATCATCAACAACAACAACATCAATGTCTGTTCTTCTTCCAACAACTTCAAAACCTCTTTTTACAACAACCTTTTCAATTCGACCCATCAAAACAAACAACGTACATATGAACAAGTTGAAGATGAAAACTAACCGCTTTACTGTTTCTGCTCTTGTTGCTGAAGATGCTGCTGCTGTTTCTTCTCAATCCTCTCCTTCTCTTCAATCTCCACCTCAATCTCAGAAGCTAGGAGTGGTTGTGAAACCAACAGACAAACCAAGACTCGTGTTGAAGTTCATTTGGATGGAGAAGAACATCGGTATTGGACTTGACCAATTGATACCTGGCCATGGAACCATTCCTCTAAGCCCTTATTACTTTTGGCCAAGGAAAGATGCTTGGGAAGAACTCAAGGAGTTGCTAGAGAGTAAGCCTTGGATATCACAAAAGCAAATGATTATTCTTCTCAATCAAGCCACCGATATTATCAATTTGTGGCAGCAGAGCGGCGGTAACTTGTCCTCCTAA

Protein sequence

>Msa0748890

MNMLASSSSTTTTSMSVLLPTTSKPLFTTTFSIRPIKTNNVHMNKLKMKTNRFTVSALVAEDAAAVSSQSSPSLQSPPQSQKLGVVVKPTDKPRLVLKFIWMEKNIGIGLDQLIPGHGTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLSS*