AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0748890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748890 MtrunA17_Chr6g0487251 89.714 175 4 4 1 175 1 161 1.65e-105 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748890 AT1G68590.1 54.945 182 57 6 1 175 2 165 4.34e-56 174
Msa0748890 AT1G68590.2 83.146 89 15 0 87 175 74 162 1.22e-54 171
Msa0748890 AT5G15760.1 68.519 108 33 1 68 174 76 183 6.16e-51 162

Find 49 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAAGCCCTTATTACTTT+TGG 0.215786 5_2:+2272131 Msa0748890:CDS
TTCCTTGGCCAAAAGTAATA+AGG 0.216981 5_2:-2272139 None:intergenic
AGAACAACAATAACATTAAA+AGG 0.282391 5_2:-2272353 None:intergenic
TTAGGTGAATAATTACTCTT+TGG 0.302007 5_2:+2272430 Msa0748890:three_prime_UTR
GACTCGTGTTGAAGTTCATT+TGG 0.338552 5_2:+2272050 Msa0748890:CDS
TTATCCTACATTTGAGCCTT+AGG 0.357487 5_2:-2272293 None:intergenic
TCCTTGGCCAAAAGTAATAA+GGG 0.369106 5_2:-2272138 None:intergenic
TCACTGAACTTGTTGTTTCA+CGG 0.380046 5_2:+2272468 Msa0748890:three_prime_UTR
TGAGGTGGAGATTGAAGAGA+AGG 0.403131 5_2:-2270644 None:intergenic
CAAAAGTAATAAGGGCTTAG+AGG 0.406041 5_2:-2272130 None:intergenic
TCTTCCCAAGCATCTTTCCT+TGG 0.419837 5_2:-2272154 None:intergenic
CCACCGATATTATCAATTTG+TGG 0.425132 5_2:+2272245 Msa0748890:CDS
CTGCCACAAATTGATAATAT+CGG 0.432997 5_2:-2272248 None:intergenic
ATATATATGTTTAGAATGTC+TGG 0.437416 5_2:-2272620 None:intergenic
CGTGTTGAAGTTCATTTGGA+TGG 0.444833 5_2:+2272054 Msa0748890:CDS
TCAATCTCCACCTCAATCTC+AGG 0.449808 5_2:+2270652 Msa0748890:CDS
ATGGAGAAGAACATCGGTAT+TGG 0.450928 5_2:+2272073 Msa0748890:CDS
ACGAGTCTTGGTTTGTCTGT+TGG 0.451057 5_2:-2272034 None:intergenic
ATGAACTTCAACACGAGTCT+TGG 0.461392 5_2:-2272046 None:intergenic
TTGGCCAAGGAAAGATGCTT+GGG 0.477445 5_2:+2272150 Msa0748890:CDS
TTCCATGGCCAGGTATCAAT+TGG 0.480682 5_2:-2272102 None:intergenic
TTTGGCCAAGGAAAGATGCT+TGG 0.483605 5_2:+2272149 Msa0748890:CDS
GGCGGTAACTTGTCCTCCTA+AGG 0.511225 5_2:+2272277 Msa0748890:CDS
AGTTGCTAGAGAGTAAGCCT+TGG 0.524129 5_2:+2272185 Msa0748890:CDS
TTTGATGGGTCGAATTGAAA+AGG 0.525559 5_2:-2270519 None:intergenic
TGGAGATTGAAGAGAAGGAG+AGG 0.528382 5_2:-2270639 None:intergenic
AGAGGAATGGTTCCATGGCC+AGG 0.528465 5_2:-2272112 None:intergenic
GTAATAAGGGCTTAGAGGAA+TGG 0.544994 5_2:-2272125 None:intergenic
GAGTTATCGTGTTCTAGATA+AGG 0.545660 5_2:-2270323 None:intergenic
GTTGTTGTGATGTAGAAGCT+AGG 0.555418 5_2:+2271998 Msa0748890:intron
TCCTACATTTGAGCCTTAGG+AGG 0.560591 5_2:-2272290 None:intergenic
AGAGAGAGAACCTGAGATTG+AGG 0.570056 5_2:-2270662 None:intergenic
GGCTTAGAGGAATGGTTCCA+TGG 0.575688 5_2:-2272117 None:intergenic
GGACTTGACCAATTGATACC+TGG 0.579475 5_2:+2272094 Msa0748890:CDS
GACCAATTGATACCTGGCCA+TGG 0.585251 5_2:+2272100 Msa0748890:CDS
TCCTCCTAAGGCTCAAATGT+AGG 0.585363 5_2:+2272289 Msa0748890:exon
AGATGCTTGGGAAGAACTCA+AGG 0.585963 5_2:+2272162 Msa0748890:CDS
GAGAGAACCTGAGATTGAGG+TGG 0.621757 5_2:-2270659 None:intergenic
TAGAACACGATAACTCACTC+TGG 0.621932 5_2:+2270330 Msa0748890:five_prime_UTR
ATTATTCACCTAAAAGAATG+TGG 0.622426 5_2:-2272420 None:intergenic
TTATCGTGTTCTAGATAAGG+AGG 0.625327 5_2:-2270320 None:intergenic
CCACAAATTGATAATATCGG+TGG 0.628396 5_2:-2272245 None:intergenic
ATCAATTTGTGGCAGCAGAG+CGG 0.648603 5_2:+2272256 Msa0748890:CDS
ATTTGGATGGAGAAGAACAT+CGG 0.651745 5_2:+2272067 Msa0748890:CDS
AATTTGTGGCAGCAGAGCGG+CGG 0.660943 5_2:+2272259 Msa0748890:CDS
TGCTAAATAAGACTATTACA+CGG 0.674644 5_2:+2272648 Msa0748890:three_prime_UTR
CAAGAGCAGAAACAGTAAAG+CGG 0.684597 5_2:-2270583 None:intergenic
TCACATTTCACATACAAACA+CGG 0.697464 5_2:-2272505 None:intergenic
TGTGATGTAGAAGCTAGGAG+TGG 0.712045 5_2:+2272003 Msa0748890:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAATATAAAACAGTTTT+AGG + chr5_2:2271128-2271147 Msa0748890:intron 10.0%
!!! ATTAATATAAAACAGTTTTA+GGG + chr5_2:2271129-2271148 Msa0748890:intron 10.0%
!!! TATTAATATAAAACAGTTTT+AGG + chr5_2:2271128-2271147 Msa0748890:intron 10.0%
!!! ATTAATATAAAACAGTTTTA+GGG + chr5_2:2271129-2271148 Msa0748890:intron 10.0%
!! TAATTATATGTTTGTTTCAA+AGG + chr5_2:2270697-2270716 Msa0748890:intron 15.0%
!! AATTATATGTTTGTTTCAAA+GGG + chr5_2:2270698-2270717 Msa0748890:intron 15.0%
!! TAAAATGATTTATGTAAAAG+TGG + chr5_2:2270884-2270903 Msa0748890:intron 15.0%
!! AAAATGATTTATGTAAAAGT+GGG + chr5_2:2270885-2270904 Msa0748890:intron 15.0%
!!! CATTTTTGTTTTATAATTGT+TGG + chr5_2:2271221-2271240 Msa0748890:intron 15.0%
!! TTGTAAAAAATAATCATGTT+TGG + chr5_2:2271553-2271572 Msa0748890:intron 15.0%
!! TAAAAAGCTTATATTATGTT+TGG - chr5_2:2271940-2271959 None:intergenic 15.0%
!! TAATTATATGTTTGTTTCAA+AGG + chr5_2:2270697-2270716 Msa0748890:intron 15.0%
!! AATTATATGTTTGTTTCAAA+GGG + chr5_2:2270698-2270717 Msa0748890:intron 15.0%
!! TAAAATGATTTATGTAAAAG+TGG + chr5_2:2270884-2270903 Msa0748890:intron 15.0%
!! AAAATGATTTATGTAAAAGT+GGG + chr5_2:2270885-2270904 Msa0748890:intron 15.0%
!!! CATTTTTGTTTTATAATTGT+TGG + chr5_2:2271221-2271240 Msa0748890:intron 15.0%
!! TTGTAAAAAATAATCATGTT+TGG + chr5_2:2271553-2271572 Msa0748890:intron 15.0%
!! TAAAAAGCTTATATTATGTT+TGG - chr5_2:2271940-2271959 None:intergenic 15.0%
!! ATTATATGTTTGTTTCAAAG+GGG + chr5_2:2270699-2270718 Msa0748890:intron 20.0%
!!! TATGATTAAAATTGAGTTGA+AGG + chr5_2:2270861-2270880 Msa0748890:intron 20.0%
!! ACAAAAATGCTTAAATTACA+GGG - chr5_2:2271109-2271128 None:intergenic 20.0%
!! TACAAAAATGCTTAAATTAC+AGG - chr5_2:2271110-2271129 None:intergenic 20.0%
!! TTCTTAATGAAACTACAAAA+GGG - chr5_2:2271156-2271175 None:intergenic 20.0%
!! TTTCTTAATGAAACTACAAA+AGG - chr5_2:2271157-2271176 None:intergenic 20.0%
!!! GTAATAGAAATGATTTTGAA+TGG + chr5_2:2271583-2271602 Msa0748890:intron 20.0%
!!! TTAAATCAATTTTATGTGTC+TGG + chr5_2:2271795-2271814 Msa0748890:intron 20.0%
!! AGAACAACAATAACATTAAA+AGG - chr5_2:2272356-2272375 None:intergenic 20.0%
!!! ATATATATGTTTAGAATGTC+TGG - chr5_2:2272623-2272642 None:intergenic 20.0%
!! ATTATATGTTTGTTTCAAAG+GGG + chr5_2:2270699-2270718 Msa0748890:intron 20.0%
!!! TATGATTAAAATTGAGTTGA+AGG + chr5_2:2270861-2270880 Msa0748890:intron 20.0%
!! ACAAAAATGCTTAAATTACA+GGG - chr5_2:2271109-2271128 None:intergenic 20.0%
!! TACAAAAATGCTTAAATTAC+AGG - chr5_2:2271110-2271129 None:intergenic 20.0%
!! TTCTTAATGAAACTACAAAA+GGG - chr5_2:2271156-2271175 None:intergenic 20.0%
!! TTTCTTAATGAAACTACAAA+AGG - chr5_2:2271157-2271176 None:intergenic 20.0%
!!! GTAATAGAAATGATTTTGAA+TGG + chr5_2:2271583-2271602 Msa0748890:intron 20.0%
!!! TTAAATCAATTTTATGTGTC+TGG + chr5_2:2271795-2271814 Msa0748890:intron 20.0%
!! AGAACAACAATAACATTAAA+AGG - chr5_2:2272356-2272375 None:intergenic 20.0%
!!! ATATATATGTTTAGAATGTC+TGG - chr5_2:2272623-2272642 None:intergenic 20.0%
! TTTCAGTGTGAATGTTTAAA+AGG + chr5_2:2270773-2270792 Msa0748890:intron 25.0%
! TTCAGTGTGAATGTTTAAAA+GGG + chr5_2:2270774-2270793 Msa0748890:intron 25.0%
!!! TTGAAATTTTGGTGTATGTT+TGG + chr5_2:2270800-2270819 Msa0748890:intron 25.0%
! AGTAGAATCAATTCTATTAG+AGG + chr5_2:2270971-2270990 Msa0748890:intron 25.0%
! TCTTAATGAAACTACAAAAG+GGG - chr5_2:2271155-2271174 None:intergenic 25.0%
!! TTTGACAAGTGTTGTTATTA+TGG + chr5_2:2271447-2271466 Msa0748890:intron 25.0%
! ACTAATACACAAGTTTGAAA+GGG + chr5_2:2271481-2271500 Msa0748890:intron 25.0%
!! TATCCTTAAGTTTTACCTAA+AGG - chr5_2:2271509-2271528 None:intergenic 25.0%
!!! GTGAATTATTGGTTTATGTT+TGG + chr5_2:2271634-2271653 Msa0748890:intron 25.0%
! TTTGAGTATAAAATCACCTT+TGG + chr5_2:2271690-2271709 Msa0748890:intron 25.0%
! TTGATTTAAACATGTTTGAG+TGG - chr5_2:2271784-2271803 None:intergenic 25.0%
!! AACTTTTCTAATTGTTACGA+TGG + chr5_2:2271976-2271995 Msa0748890:intron 25.0%
! ATTATTCACCTAAAAGAATG+TGG - chr5_2:2272423-2272442 None:intergenic 25.0%
! TTAGGTGAATAATTACTCTT+TGG + chr5_2:2272430-2272449 Msa0748890:three_prime_UTR 25.0%
! TGCTAAATAAGACTATTACA+CGG + chr5_2:2272648-2272667 Msa0748890:three_prime_UTR 25.0%
! TTTCAGTGTGAATGTTTAAA+AGG + chr5_2:2270773-2270792 Msa0748890:intron 25.0%
! TTCAGTGTGAATGTTTAAAA+GGG + chr5_2:2270774-2270793 Msa0748890:intron 25.0%
!!! TTGAAATTTTGGTGTATGTT+TGG + chr5_2:2270800-2270819 Msa0748890:intron 25.0%
! AGTAGAATCAATTCTATTAG+AGG + chr5_2:2270971-2270990 Msa0748890:intron 25.0%
! TCTTAATGAAACTACAAAAG+GGG - chr5_2:2271155-2271174 None:intergenic 25.0%
!! TTTGACAAGTGTTGTTATTA+TGG + chr5_2:2271447-2271466 Msa0748890:intron 25.0%
! ACTAATACACAAGTTTGAAA+GGG + chr5_2:2271481-2271500 Msa0748890:intron 25.0%
!! TATCCTTAAGTTTTACCTAA+AGG - chr5_2:2271509-2271528 None:intergenic 25.0%
!!! GTGAATTATTGGTTTATGTT+TGG + chr5_2:2271634-2271653 Msa0748890:intron 25.0%
! TTTGAGTATAAAATCACCTT+TGG + chr5_2:2271690-2271709 Msa0748890:intron 25.0%
! TTGATTTAAACATGTTTGAG+TGG - chr5_2:2271784-2271803 None:intergenic 25.0%
!! AACTTTTCTAATTGTTACGA+TGG + chr5_2:2271976-2271995 Msa0748890:intron 25.0%
! ATTATTCACCTAAAAGAATG+TGG - chr5_2:2272423-2272442 None:intergenic 25.0%
! TTAGGTGAATAATTACTCTT+TGG + chr5_2:2272430-2272449 Msa0748890:three_prime_UTR 25.0%
! TGCTAAATAAGACTATTACA+CGG + chr5_2:2272648-2272667 Msa0748890:three_prime_UTR 25.0%
!!! AAAAGAGGTTTTGAAGTTGT+TGG - chr5_2:2270491-2270510 None:intergenic 30.0%
GAAAAGGTTGTTGTAAAAAG+AGG - chr5_2:2270506-2270525 None:intergenic 30.0%
!!! TGTACGTTGTTTGTTTTGAT+GGG - chr5_2:2270536-2270555 None:intergenic 30.0%
!!! ATGTACGTTGTTTGTTTTGA+TGG - chr5_2:2270537-2270556 None:intergenic 30.0%
TCAGTGTGAATGTTTAAAAG+GGG + chr5_2:2270775-2270794 Msa0748890:intron 30.0%
!!! TAAAAGGGGTGTTGAAATTT+TGG + chr5_2:2270789-2270808 Msa0748890:intron 30.0%
! GTCACCTATAGAATCAATTT+TGG + chr5_2:2271004-2271023 Msa0748890:intron 30.0%
CAATATCATATGTGTAAGTC+TGG - chr5_2:2271047-2271066 None:intergenic 30.0%
TGTTTGACCTTCAAAACATT+TGG + chr5_2:2271255-2271274 Msa0748890:intron 30.0%
!! AAAACATTTGGTGTCGAATA+AGG + chr5_2:2271267-2271286 Msa0748890:intron 30.0%
AAGTGTAGAAGATTAGAAGT+AGG + chr5_2:2271328-2271347 Msa0748890:intron 30.0%
GACTAATACACAAGTTTGAA+AGG + chr5_2:2271480-2271499 Msa0748890:intron 30.0%
GTACCTTTAGGTAAAACTTA+AGG + chr5_2:2271503-2271522 Msa0748890:intron 30.0%
!! AATAATCATGTTTGGTTCTG+CGG + chr5_2:2271561-2271580 Msa0748890:intron 30.0%
! GTGAGTTGAATGTGAATTAT+TGG + chr5_2:2271623-2271642 Msa0748890:intron 30.0%
!! CTCTAGAATTGATTCTAACT+TGG - chr5_2:2271739-2271758 None:intergenic 30.0%
!!! TTCATGTGTGTTTGGTTTTA+TGG - chr5_2:2271842-2271861 None:intergenic 30.0%
CATATCAACTGACATAGAAA+TGG - chr5_2:2271902-2271921 None:intergenic 30.0%
!! ATTTGCTTTTGTGATATCCA+AGG - chr5_2:2272205-2272224 None:intergenic 30.0%
! CTGCCACAAATTGATAATAT+CGG - chr5_2:2272251-2272270 None:intergenic 30.0%
!!! CGATGTTTTTTTCTGTCAAT+AGG + chr5_2:2272323-2272342 Msa0748890:three_prime_UTR 30.0%
TCACATTTCACATACAAACA+CGG - chr5_2:2272508-2272527 None:intergenic 30.0%
!!! AAAAGAGGTTTTGAAGTTGT+TGG - chr5_2:2270491-2270510 None:intergenic 30.0%
GAAAAGGTTGTTGTAAAAAG+AGG - chr5_2:2270506-2270525 None:intergenic 30.0%
!!! TGTACGTTGTTTGTTTTGAT+GGG - chr5_2:2270536-2270555 None:intergenic 30.0%
!!! ATGTACGTTGTTTGTTTTGA+TGG - chr5_2:2270537-2270556 None:intergenic 30.0%
TCAGTGTGAATGTTTAAAAG+GGG + chr5_2:2270775-2270794 Msa0748890:intron 30.0%
!!! TAAAAGGGGTGTTGAAATTT+TGG + chr5_2:2270789-2270808 Msa0748890:intron 30.0%
! GTCACCTATAGAATCAATTT+TGG + chr5_2:2271004-2271023 Msa0748890:intron 30.0%
CAATATCATATGTGTAAGTC+TGG - chr5_2:2271047-2271066 None:intergenic 30.0%
TGTTTGACCTTCAAAACATT+TGG + chr5_2:2271255-2271274 Msa0748890:intron 30.0%
!! AAAACATTTGGTGTCGAATA+AGG + chr5_2:2271267-2271286 Msa0748890:intron 30.0%
AAGTGTAGAAGATTAGAAGT+AGG + chr5_2:2271328-2271347 Msa0748890:intron 30.0%
GACTAATACACAAGTTTGAA+AGG + chr5_2:2271480-2271499 Msa0748890:intron 30.0%
GTACCTTTAGGTAAAACTTA+AGG + chr5_2:2271503-2271522 Msa0748890:intron 30.0%
!! AATAATCATGTTTGGTTCTG+CGG + chr5_2:2271561-2271580 Msa0748890:intron 30.0%
! GTGAGTTGAATGTGAATTAT+TGG + chr5_2:2271623-2271642 Msa0748890:intron 30.0%
!! CTCTAGAATTGATTCTAACT+TGG - chr5_2:2271739-2271758 None:intergenic 30.0%
!!! TTCATGTGTGTTTGGTTTTA+TGG - chr5_2:2271842-2271861 None:intergenic 30.0%
CATATCAACTGACATAGAAA+TGG - chr5_2:2271902-2271921 None:intergenic 30.0%
!! ATTTGCTTTTGTGATATCCA+AGG - chr5_2:2272205-2272224 None:intergenic 30.0%
! CTGCCACAAATTGATAATAT+CGG - chr5_2:2272251-2272270 None:intergenic 30.0%
!!! CGATGTTTTTTTCTGTCAAT+AGG + chr5_2:2272323-2272342 Msa0748890:three_prime_UTR 30.0%
TCACATTTCACATACAAACA+CGG - chr5_2:2272508-2272527 None:intergenic 30.0%
! TTATCGTGTTCTAGATAAGG+AGG - chr5_2:2270323-2270342 None:intergenic 35.0%
! GAGTTATCGTGTTCTAGATA+AGG - chr5_2:2270326-2270345 None:intergenic 35.0%
! TTTGATGGGTCGAATTGAAA+AGG - chr5_2:2270522-2270541 None:intergenic 35.0%
!! TTGGTGTATGTTTGGTTCTA+CGG + chr5_2:2270808-2270827 Msa0748890:intron 35.0%
GATTCTATAGGTGACATGTT+TGG - chr5_2:2270999-2271018 None:intergenic 35.0%
! GGAGCCAAAATTGATTCTAT+AGG - chr5_2:2271011-2271030 None:intergenic 35.0%
!! TGTAAGTCTGGTTTCACTTT+TGG - chr5_2:2271035-2271054 None:intergenic 35.0%
!! TTCGACACCAAATGTTTTGA+AGG - chr5_2:2271265-2271284 None:intergenic 35.0%
AACACATATTGTGTCGCATA+TGG + chr5_2:2271366-2271385 Msa0748890:intron 35.0%
!! AAGTTTGAAAGGGTACCTTT+AGG + chr5_2:2271491-2271510 Msa0748890:intron 35.0%
TTTGTAGCATTTGACTCCAA+AGG - chr5_2:2271709-2271728 None:intergenic 35.0%
! AATTGATTCTAACTTGGAGC+TGG - chr5_2:2271733-2271752 None:intergenic 35.0%
!!! GTGTGTTTGGTTTTATGGTA+GGG - chr5_2:2271837-2271856 None:intergenic 35.0%
!!! TGTGTGTTTGGTTTTATGGT+AGG - chr5_2:2271838-2271857 None:intergenic 35.0%
ACATAGGTTTCATGTGTGTT+TGG - chr5_2:2271850-2271869 None:intergenic 35.0%
ACACACATGAAACCTATGTT+TGG + chr5_2:2271851-2271870 Msa0748890:intron 35.0%
ATTTGGATGGAGAAGAACAT+CGG + chr5_2:2272067-2272086 Msa0748890:CDS 35.0%
CAAAAGTAATAAGGGCTTAG+AGG - chr5_2:2272133-2272152 None:intergenic 35.0%
! CTCTAAGCCCTTATTACTTT+TGG + chr5_2:2272131-2272150 Msa0748890:CDS 35.0%
TCCTTGGCCAAAAGTAATAA+GGG - chr5_2:2272141-2272160 None:intergenic 35.0%
TTCCTTGGCCAAAAGTAATA+AGG - chr5_2:2272142-2272161 None:intergenic 35.0%
! CCACAAATTGATAATATCGG+TGG - chr5_2:2272248-2272267 None:intergenic 35.0%
CCACCGATATTATCAATTTG+TGG + chr5_2:2272245-2272264 Msa0748890:CDS 35.0%
TTATCCTACATTTGAGCCTT+AGG - chr5_2:2272296-2272315 None:intergenic 35.0%
!! TCACTGAACTTGTTGTTTCA+CGG + chr5_2:2272468-2272487 Msa0748890:three_prime_UTR 35.0%
! TTATCGTGTTCTAGATAAGG+AGG - chr5_2:2270323-2270342 None:intergenic 35.0%
! GAGTTATCGTGTTCTAGATA+AGG - chr5_2:2270326-2270345 None:intergenic 35.0%
! TTTGATGGGTCGAATTGAAA+AGG - chr5_2:2270522-2270541 None:intergenic 35.0%
!! TTGGTGTATGTTTGGTTCTA+CGG + chr5_2:2270808-2270827 Msa0748890:intron 35.0%
GATTCTATAGGTGACATGTT+TGG - chr5_2:2270999-2271018 None:intergenic 35.0%
! GGAGCCAAAATTGATTCTAT+AGG - chr5_2:2271011-2271030 None:intergenic 35.0%
!! TGTAAGTCTGGTTTCACTTT+TGG - chr5_2:2271035-2271054 None:intergenic 35.0%
!! TTCGACACCAAATGTTTTGA+AGG - chr5_2:2271265-2271284 None:intergenic 35.0%
AACACATATTGTGTCGCATA+TGG + chr5_2:2271366-2271385 Msa0748890:intron 35.0%
!! AAGTTTGAAAGGGTACCTTT+AGG + chr5_2:2271491-2271510 Msa0748890:intron 35.0%
TTTGTAGCATTTGACTCCAA+AGG - chr5_2:2271709-2271728 None:intergenic 35.0%
! AATTGATTCTAACTTGGAGC+TGG - chr5_2:2271733-2271752 None:intergenic 35.0%
!!! GTGTGTTTGGTTTTATGGTA+GGG - chr5_2:2271837-2271856 None:intergenic 35.0%
!!! TGTGTGTTTGGTTTTATGGT+AGG - chr5_2:2271838-2271857 None:intergenic 35.0%
ACATAGGTTTCATGTGTGTT+TGG - chr5_2:2271850-2271869 None:intergenic 35.0%
ACACACATGAAACCTATGTT+TGG + chr5_2:2271851-2271870 Msa0748890:intron 35.0%
ATTTGGATGGAGAAGAACAT+CGG + chr5_2:2272067-2272086 Msa0748890:CDS 35.0%
CAAAAGTAATAAGGGCTTAG+AGG - chr5_2:2272133-2272152 None:intergenic 35.0%
! CTCTAAGCCCTTATTACTTT+TGG + chr5_2:2272131-2272150 Msa0748890:CDS 35.0%
TCCTTGGCCAAAAGTAATAA+GGG - chr5_2:2272141-2272160 None:intergenic 35.0%
TTCCTTGGCCAAAAGTAATA+AGG - chr5_2:2272142-2272161 None:intergenic 35.0%
! CCACAAATTGATAATATCGG+TGG - chr5_2:2272248-2272267 None:intergenic 35.0%
CCACCGATATTATCAATTTG+TGG + chr5_2:2272245-2272264 Msa0748890:CDS 35.0%
TTATCCTACATTTGAGCCTT+AGG - chr5_2:2272296-2272315 None:intergenic 35.0%
!! TCACTGAACTTGTTGTTTCA+CGG + chr5_2:2272468-2272487 Msa0748890:three_prime_UTR 35.0%
TAGAACACGATAACTCACTC+TGG + chr5_2:2270330-2270349 Msa0748890:five_prime_UTR 40.0%
CAAGAGCAGAAACAGTAAAG+CGG - chr5_2:2270586-2270605 None:intergenic 40.0%
!! AAGTCTGGTTTCACTTTTGG+AGG - chr5_2:2271032-2271051 None:intergenic 40.0%
TAGCTTCTGCATCCAAACAT+AGG - chr5_2:2271866-2271885 None:intergenic 40.0%
GTTGTTGTGATGTAGAAGCT+AGG + chr5_2:2271998-2272017 Msa0748890:intron 40.0%
ATGAACTTCAACACGAGTCT+TGG - chr5_2:2272049-2272068 None:intergenic 40.0%
GACTCGTGTTGAAGTTCATT+TGG + chr5_2:2272050-2272069 Msa0748890:CDS 40.0%
CGTGTTGAAGTTCATTTGGA+TGG + chr5_2:2272054-2272073 Msa0748890:CDS 40.0%
ATGGAGAAGAACATCGGTAT+TGG + chr5_2:2272073-2272092 Msa0748890:CDS 40.0%
GTAATAAGGGCTTAGAGGAA+TGG - chr5_2:2272128-2272147 None:intergenic 40.0%
! GACAAGTGCCACATTCTTTT+AGG + chr5_2:2272412-2272431 Msa0748890:three_prime_UTR 40.0%
TAGAACACGATAACTCACTC+TGG + chr5_2:2270330-2270349 Msa0748890:five_prime_UTR 40.0%
CAAGAGCAGAAACAGTAAAG+CGG - chr5_2:2270586-2270605 None:intergenic 40.0%
!! AAGTCTGGTTTCACTTTTGG+AGG - chr5_2:2271032-2271051 None:intergenic 40.0%
TAGCTTCTGCATCCAAACAT+AGG - chr5_2:2271866-2271885 None:intergenic 40.0%
GTTGTTGTGATGTAGAAGCT+AGG + chr5_2:2271998-2272017 Msa0748890:intron 40.0%
ATGAACTTCAACACGAGTCT+TGG - chr5_2:2272049-2272068 None:intergenic 40.0%
GACTCGTGTTGAAGTTCATT+TGG + chr5_2:2272050-2272069 Msa0748890:CDS 40.0%
CGTGTTGAAGTTCATTTGGA+TGG + chr5_2:2272054-2272073 Msa0748890:CDS 40.0%
ATGGAGAAGAACATCGGTAT+TGG + chr5_2:2272073-2272092 Msa0748890:CDS 40.0%
GTAATAAGGGCTTAGAGGAA+TGG - chr5_2:2272128-2272147 None:intergenic 40.0%
! GACAAGTGCCACATTCTTTT+AGG + chr5_2:2272412-2272431 Msa0748890:three_prime_UTR 40.0%
TGGAGATTGAAGAGAAGGAG+AGG - chr5_2:2270642-2270661 None:intergenic 45.0%
TGAGGTGGAGATTGAAGAGA+AGG - chr5_2:2270647-2270666 None:intergenic 45.0%
TCAATCTCCACCTCAATCTC+AGG + chr5_2:2270652-2270671 Msa0748890:CDS 45.0%
AGAGAGAGAACCTGAGATTG+AGG - chr5_2:2270665-2270684 None:intergenic 45.0%
TGTGATGTAGAAGCTAGGAG+TGG + chr5_2:2272003-2272022 Msa0748890:intron 45.0%
!! ACGAGTCTTGGTTTGTCTGT+TGG - chr5_2:2272037-2272056 None:intergenic 45.0%
GGACTTGACCAATTGATACC+TGG + chr5_2:2272094-2272113 Msa0748890:CDS 45.0%
TTCCATGGCCAGGTATCAAT+TGG - chr5_2:2272105-2272124 None:intergenic 45.0%
!! GCCCTTATTACTTTTGGCCA+AGG + chr5_2:2272137-2272156 Msa0748890:CDS 45.0%
TTTGGCCAAGGAAAGATGCT+TGG + chr5_2:2272149-2272168 Msa0748890:CDS 45.0%
TTGGCCAAGGAAAGATGCTT+GGG + chr5_2:2272150-2272169 Msa0748890:CDS 45.0%
TCTTCCCAAGCATCTTTCCT+TGG - chr5_2:2272157-2272176 None:intergenic 45.0%
AGATGCTTGGGAAGAACTCA+AGG + chr5_2:2272162-2272181 Msa0748890:CDS 45.0%
AGTTGCTAGAGAGTAAGCCT+TGG + chr5_2:2272185-2272204 Msa0748890:CDS 45.0%
ATCAATTTGTGGCAGCAGAG+CGG + chr5_2:2272256-2272275 Msa0748890:CDS 45.0%
TCCTCCTAAGGCTCAAATGT+AGG + chr5_2:2272289-2272308 Msa0748890:exon 45.0%
TCCTACATTTGAGCCTTAGG+AGG - chr5_2:2272293-2272312 None:intergenic 45.0%
TGGAGATTGAAGAGAAGGAG+AGG - chr5_2:2270642-2270661 None:intergenic 45.0%
TGAGGTGGAGATTGAAGAGA+AGG - chr5_2:2270647-2270666 None:intergenic 45.0%
TCAATCTCCACCTCAATCTC+AGG + chr5_2:2270652-2270671 Msa0748890:CDS 45.0%
AGAGAGAGAACCTGAGATTG+AGG - chr5_2:2270665-2270684 None:intergenic 45.0%
TGTGATGTAGAAGCTAGGAG+TGG + chr5_2:2272003-2272022 Msa0748890:intron 45.0%
!! ACGAGTCTTGGTTTGTCTGT+TGG - chr5_2:2272037-2272056 None:intergenic 45.0%
GGACTTGACCAATTGATACC+TGG + chr5_2:2272094-2272113 Msa0748890:CDS 45.0%
TTCCATGGCCAGGTATCAAT+TGG - chr5_2:2272105-2272124 None:intergenic 45.0%
!! GCCCTTATTACTTTTGGCCA+AGG + chr5_2:2272137-2272156 Msa0748890:CDS 45.0%
TTTGGCCAAGGAAAGATGCT+TGG + chr5_2:2272149-2272168 Msa0748890:CDS 45.0%
TTGGCCAAGGAAAGATGCTT+GGG + chr5_2:2272150-2272169 Msa0748890:CDS 45.0%
TCTTCCCAAGCATCTTTCCT+TGG - chr5_2:2272157-2272176 None:intergenic 45.0%
AGATGCTTGGGAAGAACTCA+AGG + chr5_2:2272162-2272181 Msa0748890:CDS 45.0%
AGTTGCTAGAGAGTAAGCCT+TGG + chr5_2:2272185-2272204 Msa0748890:CDS 45.0%
ATCAATTTGTGGCAGCAGAG+CGG + chr5_2:2272256-2272275 Msa0748890:CDS 45.0%
TCCTCCTAAGGCTCAAATGT+AGG + chr5_2:2272289-2272308 Msa0748890:exon 45.0%
TCCTACATTTGAGCCTTAGG+AGG - chr5_2:2272293-2272312 None:intergenic 45.0%
GAGAGAACCTGAGATTGAGG+TGG - chr5_2:2270662-2270681 None:intergenic 50.0%
GACCAATTGATACCTGGCCA+TGG + chr5_2:2272100-2272119 Msa0748890:CDS 50.0%
GGCTTAGAGGAATGGTTCCA+TGG - chr5_2:2272120-2272139 None:intergenic 50.0%
GAGAGAACCTGAGATTGAGG+TGG - chr5_2:2270662-2270681 None:intergenic 50.0%
GACCAATTGATACCTGGCCA+TGG + chr5_2:2272100-2272119 Msa0748890:CDS 50.0%
GGCTTAGAGGAATGGTTCCA+TGG - chr5_2:2272120-2272139 None:intergenic 50.0%
AGAGGAATGGTTCCATGGCC+AGG - chr5_2:2272115-2272134 None:intergenic 55.0%
AATTTGTGGCAGCAGAGCGG+CGG + chr5_2:2272259-2272278 Msa0748890:CDS 55.0%
! GGCGGTAACTTGTCCTCCTA+AGG + chr5_2:2272277-2272296 Msa0748890:CDS 55.0%
AGAGGAATGGTTCCATGGCC+AGG - chr5_2:2272115-2272134 None:intergenic 55.0%
AATTTGTGGCAGCAGAGCGG+CGG + chr5_2:2272259-2272278 Msa0748890:CDS 55.0%
! GGCGGTAACTTGTCCTCCTA+AGG + chr5_2:2272277-2272296 Msa0748890:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 2270317 2272683 2270317 ID=Msa0748890;Name=Msa0748890
chr5_2 mRNA 2270317 2272683 2270317 ID=Msa0748890-mRNA-1;Parent=Msa0748890;Name=Msa0748890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=114|1|1|1|1|1|2|386|175
chr5_2 exon 2270317 2270673 2270317 ID=Msa0748890-mRNA-1:exon:620;Parent=Msa0748890-mRNA-1
chr5_2 exon 2272013 2272683 2272013 ID=Msa0748890-mRNA-1:exon:621;Parent=Msa0748890-mRNA-1
chr5_2 five_prime_UTR 2270317 2270430 2270317 ID=Msa0748890-mRNA-1:five_prime_utr;Parent=Msa0748890-mRNA-1
chr5_2 CDS 2270431 2270673 2270431 ID=Msa0748890-mRNA-1:cds;Parent=Msa0748890-mRNA-1
chr5_2 CDS 2272013 2272297 2272013 ID=Msa0748890-mRNA-1:cds;Parent=Msa0748890-mRNA-1
chr5_2 three_prime_UTR 2272298 2272683 2272298 ID=Msa0748890-mRNA-1:three_prime_utr;Parent=Msa0748890-mRNA-1
Gene Sequence

>Msa0748890

ATGAACATGTTAGCATCATCATCATCAACAACAACAACATCAATGTCTGTTCTTCTTCCAACAACTTCAAAACCTCTTTTTACAACAACCTTTTCAATTCGACCCATCAAAACAAACAACGTACATATGAACAAGTTGAAGATGAAAACTAACCGCTTTACTGTTTCTGCTCTTGTTGCTGAAGATGCTGCTGCTGTTTCTTCTCAATCCTCTCCTTCTCTTCAATCTCCACCTCAATCTCAGAAGCTAGGAGTGGTTGTGAAACCAACAGACAAACCAAGACTCGTGTTGAAGTTCATTTGGATGGAGAAGAACATCGGTATTGGACTTGACCAATTGATACCTGGCCATGGAACCATTCCTCTAAGCCCTTATTACTTTTGGCCAAGGAAAGATGCTTGGGAAGAACTCAAGGAGTTGCTAGAGAGTAAGCCTTGGATATCACAAAAGCAAATGATTATTCTTCTCAATCAAGCCACCGATATTATCAATTTGTGGCAGCAGAGCGGCGGTAACTTGTCCTCCTAA

Protein sequence

>Msa0748890

MNMLASSSSTTTTSMSVLLPTTSKPLFTTTFSIRPIKTNNVHMNKLKMKTNRFTVSALVAEDAAAVSSQSSPSLQSPPQSQKLGVVVKPTDKPRLVLKFIWMEKNIGIGLDQLIPGHGTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLSS*