AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0475130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475130 MtrunA17_Chr3g0132191 98.605 215 1 2 4 217 3 216 8.56e-156 430
Msa0475130 MtrunA17_Chr7g0272991 66.038 159 40 4 38 185 83 238 3.22e-66 205
Msa0475130 MtrunA17_Chr2g0310741 68.276 145 35 4 37 172 84 226 1.30e-64 201
Msa0475130 MtrunA17_Chr1g0191681 69.014 142 33 2 38 168 83 224 3.85e-63 197
Msa0475130 MtrunA17_Chr2g0288481 48.333 180 73 3 38 199 67 244 2.12e-49 161
Msa0475130 MtrunA17_Chr2g0318881 62.069 87 32 1 55 140 21 107 3.56e-32 113
Msa0475130 MtrunA17_Chr2g0318921 61.364 88 33 1 55 141 21 108 1.13e-31 112
Msa0475130 MtrunA17_Chr8g0376351 71.429 63 18 0 74 136 1 63 5.58e-27 99.0
Msa0475130 MtrunA17_Chr3g0081161 40.506 79 47 0 56 134 8 86 5.23e-12 63.9
Msa0475130 MtrunA17_Chr8g0354151 37.975 79 49 0 56 134 8 86 7.95e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475130 AT3G48590.1 86.339 183 18 3 24 200 33 214 1.04e-101 294
Msa0475130 AT5G63470.2 76.887 212 25 4 12 200 20 230 2.92e-101 294
Msa0475130 AT5G63470.1 76.887 212 25 4 12 200 20 230 2.92e-101 294
Msa0475130 AT1G56170.1 70.588 136 35 2 35 168 55 187 1.27e-65 201
Msa0475130 AT1G56170.2 70.588 136 35 2 35 168 55 187 1.27e-65 201
Msa0475130 AT1G54830.2 65.359 153 46 3 38 184 52 203 2.27e-64 199
Msa0475130 AT1G54830.3 65.359 153 46 3 38 184 52 203 2.27e-64 199
Msa0475130 AT1G54830.1 65.359 153 46 3 38 184 52 203 2.27e-64 199
Msa0475130 AT1G08970.3 67.586 145 37 3 38 173 62 205 3.54e-63 196
Msa0475130 AT1G08970.4 67.586 145 37 3 38 173 62 205 3.54e-63 196
Msa0475130 AT1G08970.2 67.586 145 37 3 38 173 62 205 3.54e-63 196
Msa0475130 AT1G08970.1 67.586 145 37 3 38 173 62 205 3.54e-63 196
Msa0475130 AT5G50480.1 51.323 189 67 8 21 200 20 192 1.29e-52 168
Msa0475130 AT5G27910.1 43.779 217 88 7 1 213 1 187 2.40e-46 152
Msa0475130 AT5G50490.1 45.946 148 72 3 30 174 13 155 6.19e-37 128
Msa0475130 AT5G50470.1 39.086 197 94 7 21 208 31 210 6.58e-35 123
Msa0475130 AT5G38140.1 44.000 100 52 2 35 133 48 144 1.74e-25 99.0
Msa0475130 AT3G12480.1 37.975 79 49 0 56 134 8 86 7.63e-12 63.5

Find 101 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGCTAAAGCATATTTAA+TGG 0.228543 3_3:-78192633 None:intergenic
CATTAGATGAACGTTATTAA+AGG 0.257098 3_3:-78192848 None:intergenic
CTCAGGCTTGGCAGTCTGTT+TGG 0.288988 3_3:+78190785 Msa0475130:CDS
TTGAACTCACCATTCGTTCT+TGG 0.290380 3_3:+78190503 Msa0475130:CDS
CTAGGGCTTAATTTAATTGA+TGG 0.293080 3_3:+78192710 Msa0475130:three_prime_UTR
TTGTTGATCATCAAGTTAAA+AGG 0.293290 3_3:-78193295 None:intergenic
CTTTAGCCTGGGAAACTGTT+AGG 0.320246 3_3:+78192645 Msa0475130:three_prime_UTR
TCCTTATTATTATCCTCCTA+TGG 0.322109 3_3:+78190690 Msa0475130:CDS
CCCATAGGAGGATAATAATA+AGG 0.322822 3_3:-78190691 None:intergenic
GTGTTGGATATTGTTGTTGC+TGG 0.326874 3_3:-78190246 None:intergenic
TCTGTTTATATGTCTCAAAA+TGG 0.344957 3_3:+78193095 Msa0475130:three_prime_UTR
AATATCTTGTAAAAGACATT+TGG 0.349503 3_3:+78193482 Msa0475130:three_prime_UTR
TCATCATCATTCATCATTCA+TGG 0.360396 3_3:+78190210 Msa0475130:exon
AATTAGTTAGACTTTACAAT+TGG 0.370481 3_3:+78190041 None:intergenic
AATGGTTTCAATGCCTCATA+TGG 0.374157 3_3:+78193113 Msa0475130:three_prime_UTR
CACTCAGCTGCTGAGCAAAA+AGG 0.376691 3_3:-78193139 None:intergenic
TTATCTTATTCAAATTTCCT+AGG 0.377329 3_3:+78192692 Msa0475130:three_prime_UTR
TCAAGTTAAAAGGTTCTTGA+TGG 0.381822 3_3:-78193285 None:intergenic
TGAATAAGATAATTGATTGC+TGG 0.383736 3_3:-78192681 None:intergenic
CAAGCTTTGGCAAAGAGAAT+TGG 0.395526 3_3:-78190466 None:intergenic
TTATGTTCAGCCGCCTTCTC+AGG 0.407879 3_3:+78190768 Msa0475130:CDS
TCACCTCCGTTAAGTATCAT+TGG 0.414174 3_3:-78193438 None:intergenic
AATGAAAAGCTCACAAGCTT+TGG 0.414215 3_3:-78190479 None:intergenic
AACAAGACAAACAAGCCAAC+TGG 0.422647 3_3:-78193070 None:intergenic
ATATGTCTGATATAATGTTC+TGG 0.429670 3_3:-78192741 None:intergenic
TGGTCGTCCCGCTGTTGATC+CGG 0.430949 3_3:+78190735 Msa0475130:CDS
CCATTAAATATGCTTTAGCC+TGG 0.435397 3_3:+78192633 Msa0475130:three_prime_UTR
CCTCCTATGGGACAACCTGC+TGG 0.443243 3_3:+78190703 Msa0475130:CDS
TCATGTACATCTGTGCTTCA+AGG 0.444382 3_3:+78192970 Msa0475130:three_prime_UTR
TTCAGCCGCCTTCTCAGGCT+TGG 0.445274 3_3:+78190773 Msa0475130:CDS
AAGTTTCCAATGATACTTAA+CGG 0.451173 3_3:+78193432 Msa0475130:three_prime_UTR
ATATTGCTGCTGCTATTACT+AGG 0.451638 3_3:+78190569 Msa0475130:CDS
AGTGACCGCGCTGCTGCTGA+TGG 0.452941 3_3:+78193158 Msa0475130:three_prime_UTR
TGGCAGACGGGAGCGGATGA+TGG 0.454235 3_3:+78190805 Msa0475130:CDS
TGCACAGAAGGACCATTGTT+CGG 0.455723 3_3:-78193351 None:intergenic
AACAACAGCTTCAAATGTTC+TGG 0.455902 3_3:+78190323 Msa0475130:CDS
TGGCAGTCTGTTTGGCAGAC+GGG 0.457754 3_3:+78190793 Msa0475130:CDS
TGGACTTCTGCAGTGTTGCT+TGG 0.458943 3_3:+78193204 Msa0475130:three_prime_UTR
TCTTATGCTGGTGGTGGTGT+TGG 0.460055 3_3:+78190829 Msa0475130:CDS
TTGGCAGTCTGTTTGGCAGA+CGG 0.463047 3_3:+78190792 Msa0475130:CDS
GTCTGTTTGGCAGACGGGAG+CGG 0.463208 3_3:+78190798 Msa0475130:CDS
CCCGCTGTTGATCCGGCTAC+CGG 0.469158 3_3:+78190742 Msa0475130:CDS
CCTTATTATTATCCTCCTAT+GGG 0.475192 3_3:+78190691 Msa0475130:CDS
ATTAGTTAGACTTTACAATT+GGG 0.481509 3_3:+78190042 None:intergenic
TGATGGAATTGTGAATTCAA+TGG 0.488221 3_3:-78190152 None:intergenic
AGGTAGGGCCTACGGCAGCC+TGG 0.493696 3_3:-78190101 None:intergenic
GCGGATGATGGTTCTTATGC+TGG 0.494268 3_3:+78190817 Msa0475130:CDS
GTTATTGTAGGTGGTGGTAG+TGG 0.498276 3_3:+78192572 Msa0475130:intron
CATCAATTAAATTAAGCCCT+AGG 0.504678 3_3:-78192709 None:intergenic
TATCTTATTCAAATTTCCTA+GGG 0.509926 3_3:+78192693 Msa0475130:three_prime_UTR
GTTGTTGTTGGAGAAGATGT+TGG 0.512349 3_3:-78190300 None:intergenic
AATGGAATAACAACATAAGC+AGG 0.516458 3_3:-78193033 None:intergenic
TTGGATGATTGGATAAGGTA+GGG 0.519348 3_3:-78190116 None:intergenic
ATTCCAGCAGGTTGTCCCAT+AGG 0.521379 3_3:-78190706 None:intergenic
CCTGCATAATCTTGTAAATG+TGG 0.522307 3_3:+78192779 Msa0475130:three_prime_UTR
GCTGGTGGTGGTGTTGGCAG+TGG 0.530864 3_3:+78190835 Msa0475130:CDS
CAACCTGCTGGAATGATGAT+TGG 0.531059 3_3:+78190715 Msa0475130:CDS
TTCAATTTCTTGACGTTGGT+AGG 0.532955 3_3:-78190347 None:intergenic
GGTAGGGCCTACGGCAGCCT+GGG 0.538956 3_3:-78190100 None:intergenic
GGTGTAACTGCCGTGGGTGA+AGG 0.539087 3_3:-78190268 None:intergenic
CATTAAATATGCTTTAGCCT+GGG 0.541648 3_3:+78192634 Msa0475130:three_prime_UTR
TCATCTTTAATCTCGTCTCT+CGG 0.544717 3_3:-78190625 None:intergenic
CCACATTTACAAGATTATGC+AGG 0.551427 3_3:-78192779 None:intergenic
ATTGGATAAGGTAGGGCCTA+CGG 0.553186 3_3:-78190109 None:intergenic
TGTTTCACATATTGCACAGA+AGG 0.553286 3_3:-78193363 None:intergenic
TGAACATAAACACCGGTAGC+CGG 0.556443 3_3:-78190754 None:intergenic
ATTGTTGGTGCTGCTGCTAG+TGG 0.559151 3_3:+78190664 Msa0475130:CDS
TTTGGATGATTGGATAAGGT+AGG 0.559688 3_3:-78190117 None:intergenic
CGACCAATCATCATTCCAGC+AGG 0.560161 3_3:-78190718 None:intergenic
TGGAAGCAGAAAATGCTACT+AGG 0.560272 3_3:-78192613 None:intergenic
CTAAATCCTAACAGTTTCCC+AGG 0.561836 3_3:-78192651 None:intergenic
TTTGTTAACTAAATTTGTAT+GGG 0.564414 3_3:+78193259 Msa0475130:three_prime_UTR
TGCGTGCTAATGGAAGTTGA+TGG 0.566195 3_3:-78190390 None:intergenic
CCGGTAGCCGGATCAACAGC+GGG 0.566961 3_3:-78190742 None:intergenic
AGTGGTCAGCACAATGGCGA+TGG 0.568390 3_3:+78190853 Msa0475130:CDS
TGGTGGTGGTGTAACTGCCG+TGG 0.571103 3_3:-78190275 None:intergenic
CGTGTTCAATTTCTTGACGT+TGG 0.574575 3_3:-78190351 None:intergenic
GATGGTTCTTATGCTGGTGG+TGG 0.575597 3_3:+78190823 Msa0475130:CDS
TGGAGAAGATGTTGGAATGG+TGG 0.580552 3_3:-78190292 None:intergenic
GACTGCCAAGCCTGAGAAGG+CGG 0.581694 3_3:-78190778 None:intergenic
AGCATGAAGCCAAGAACGAA+TGG 0.590029 3_3:-78190512 None:intergenic
TGTTGGAGAAGATGTTGGAA+TGG 0.596521 3_3:-78190295 None:intergenic
CCAGCAGGTTGTCCCATAGG+AGG 0.597127 3_3:-78190703 None:intergenic
GGGGAAAGAAAAGAAGTCCC+AGG 0.599358 3_3:+78190083 Msa0475130:five_prime_UTR
ACAGACTGCCAAGCCTGAGA+AGG 0.599594 3_3:-78190781 None:intergenic
AGCACAATGGCGATGGCCAG+AGG 0.601116 3_3:+78190860 Msa0475130:CDS
AGAAGATGTTGGAATGGTGG+TGG 0.605173 3_3:-78190289 None:intergenic
AAGAAGTCCCAGGCTGCCGT+AGG 0.612683 3_3:+78190093 Msa0475130:five_prime_UTR
ACTGCCGTGGGTGAAGGTGT+TGG 0.614160 3_3:-78190262 None:intergenic
ATAAGATAATTGATTGCTGG+AGG 0.617569 3_3:-78192678 None:intergenic
ATCTGTGCTTCAAGGCACAC+AGG 0.620861 3_3:+78192978 Msa0475130:three_prime_UTR
GGAATTGTGAATTCAATGGA+AGG 0.624201 3_3:-78190148 None:intergenic
GGTGGTGGTGTAACTGCCGT+GGG 0.631253 3_3:-78190274 None:intergenic
ATATCCAACACCTTCACCCA+CGG 0.635031 3_3:+78190258 Msa0475130:CDS
ACCGGTAGCCGGATCAACAG+CGG 0.640253 3_3:-78190743 None:intergenic
GTTGGCAGTGGTCAGCACAA+TGG 0.663712 3_3:+78190847 Msa0475130:CDS
GATGATGGTTCTTATGCTGG+TGG 0.665141 3_3:+78190820 Msa0475130:CDS
CAAAATTTAAAACCGAACAA+TGG 0.668599 3_3:+78193339 Msa0475130:three_prime_UTR
AGGCGGCTGAACATAAACAC+CGG 0.726448 3_3:-78190761 None:intergenic
TTTCCAATGATACTTAACGG+AGG 0.739279 3_3:+78193435 Msa0475130:three_prime_UTR
ACAGTCCATCAGCAGCAGCG+CGG 0.752725 3_3:-78193163 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGATAAAAAACATTAA+AGG + chr3_3:78191744-78191763 Msa0475130:intron 10.0%
!!! TTAATTTATAGATGATTTTG+AGG + chr3_3:78191336-78191355 Msa0475130:intron 15.0%
!!! TAATTTATAGATGATTTTGA+GGG + chr3_3:78191337-78191356 Msa0475130:intron 15.0%
!! TTAATAAAAACAAAACAATG+TGG - chr3_3:78191885-78191904 None:intergenic 15.0%
!! TTATTAATTATTTATAGGTG+TGG + chr3_3:78191898-78191917 Msa0475130:intron 15.0%
!!! TTTTGTTAACTAAATTTGTA+TGG + chr3_3:78193258-78193277 Msa0475130:three_prime_UTR 15.0%
!! TTTGTTAACTAAATTTGTAT+GGG + chr3_3:78193259-78193278 Msa0475130:three_prime_UTR 15.0%
!!! GATTTTCTAAATTACATTTT+TGG + chr3_3:78193459-78193478 Msa0475130:three_prime_UTR 15.0%
!!! GACTGATATTTTTGATTTTT+TGG + chr3_3:78190591-78190610 Msa0475130:CDS 20.0%
!! TAAGTATTATGCAAGTATAA+AGG + chr3_3:78191386-78191405 Msa0475130:intron 20.0%
!! AAGTATTATGCAAGTATAAA+GGG + chr3_3:78191387-78191406 Msa0475130:intron 20.0%
!! TATCTAGATAGATATTTCAT+TGG + chr3_3:78191420-78191439 Msa0475130:intron 20.0%
!!! TTATGTTACATGTCATTTAT+TGG + chr3_3:78191515-78191534 Msa0475130:intron 20.0%
!! TAAAACATATTGGTAAATTC+CGG - chr3_3:78191824-78191843 None:intergenic 20.0%
!! GCAAATCTAATAAAACATAT+TGG - chr3_3:78191834-78191853 None:intergenic 20.0%
!! TTTGCTTTGCAATAAAATTA+TGG + chr3_3:78191849-78191868 Msa0475130:intron 20.0%
!! ATTTATGACAAAAACTTTGA+TGG + chr3_3:78192064-78192083 Msa0475130:intron 20.0%
!!! ATTTTCAAAACTATTGTTGA+TGG + chr3_3:78192524-78192543 Msa0475130:intron 20.0%
!!! CTTTCTTTTATTGTTATTGT+AGG + chr3_3:78192560-78192579 Msa0475130:intron 20.0%
!! TTATCTTATTCAAATTTCCT+AGG + chr3_3:78192692-78192711 Msa0475130:three_prime_UTR 20.0%
!! TATCTTATTCAAATTTCCTA+GGG + chr3_3:78192693-78192712 Msa0475130:three_prime_UTR 20.0%
!! AATATCTTGTAAAAGACATT+TGG + chr3_3:78193482-78193501 Msa0475130:three_prime_UTR 20.0%
!! TCATTTTCTCATATTATTGC+TGG - chr3_3:78191182-78191201 None:intergenic 25.0%
! TTAAATGTAGCTACATTTGT+TGG + chr3_3:78191208-78191227 Msa0475130:intron 25.0%
! TAGATAGATATTTCATTGGT+TGG + chr3_3:78191424-78191443 Msa0475130:intron 25.0%
! TAGTATTACCTTGTCAAAAA+CGG + chr3_3:78191641-78191660 Msa0475130:intron 25.0%
!! TAGATGCTATGTTCTTTTAA+AGG + chr3_3:78191942-78191961 Msa0475130:intron 25.0%
!! AGATGCTATGTTCTTTTAAA+GGG + chr3_3:78191943-78191962 Msa0475130:intron 25.0%
! GTCAATAATAATCCATAACA+AGG - chr3_3:78192090-78192109 None:intergenic 25.0%
!!! TGGATTATTATTGACTTAGT+CGG + chr3_3:78192095-78192114 Msa0475130:intron 25.0%
! TCTGATCTAATCAATGAATT+GGG - chr3_3:78192305-78192324 None:intergenic 25.0%
! ATCTGATCTAATCAATGAAT+TGG - chr3_3:78192306-78192325 None:intergenic 25.0%
! ACCATTTATGTAAGATTAGA+TGG + chr3_3:78192412-78192431 Msa0475130:intron 25.0%
! ACCATCTAATCTTACATAAA+TGG - chr3_3:78192416-78192435 None:intergenic 25.0%
!!! TCTTTTATTGTTATTGTAGG+TGG + chr3_3:78192563-78192582 Msa0475130:intron 25.0%
! TGAATAAGATAATTGATTGC+TGG - chr3_3:78192684-78192703 None:intergenic 25.0%
! ATATGTCTGATATAATGTTC+TGG - chr3_3:78192744-78192763 None:intergenic 25.0%
! CATTAGATGAACGTTATTAA+AGG - chr3_3:78192851-78192870 None:intergenic 25.0%
! TCTGTTTATATGTCTCAAAA+TGG + chr3_3:78193095-78193114 Msa0475130:three_prime_UTR 25.0%
!!! TGTTGCTTGGAATTTTTTTA+GGG + chr3_3:78193217-78193236 Msa0475130:three_prime_UTR 25.0%
! TTGTTGATCATCAAGTTAAA+AGG - chr3_3:78193298-78193317 None:intergenic 25.0%
!! CAAAATTTAAAACCGAACAA+TGG + chr3_3:78193339-78193358 Msa0475130:three_prime_UTR 25.0%
! AAGTTTCCAATGATACTTAA+CGG + chr3_3:78193432-78193451 Msa0475130:three_prime_UTR 25.0%
TGGGCAAACAAAAATTTAGA+AGG + chr3_3:78190061-78190080 Msa0475130:five_prime_UTR 30.0%
GGGCAAACAAAAATTTAGAA+GGG + chr3_3:78190062-78190081 Msa0475130:five_prime_UTR 30.0%
GGCAAACAAAAATTTAGAAG+GGG + chr3_3:78190063-78190082 Msa0475130:five_prime_UTR 30.0%
GCAAACAAAAATTTAGAAGG+GGG + chr3_3:78190064-78190083 Msa0475130:five_prime_UTR 30.0%
!! CATTTTTGGATGATTGGATA+AGG - chr3_3:78190124-78190143 None:intergenic 30.0%
!! GGAAATCATTTTTGGATGAT+TGG - chr3_3:78190130-78190149 None:intergenic 30.0%
! CAATGGAAGGAAATCATTTT+TGG - chr3_3:78190138-78190157 None:intergenic 30.0%
TGATGGAATTGTGAATTCAA+TGG - chr3_3:78190155-78190174 None:intergenic 30.0%
!!! ATGTTTTGAGGAGTAACAAT+TGG - chr3_3:78190191-78190210 None:intergenic 30.0%
!! TGAATGATGATGATGTTTTG+AGG - chr3_3:78190203-78190222 None:intergenic 30.0%
TCATCATCATTCATCATTCA+TGG + chr3_3:78190210-78190229 Msa0475130:exon 30.0%
! ATTTTCTTAATGCGTGCTAA+TGG - chr3_3:78190403-78190422 None:intergenic 30.0%
TCCTTATTATTATCCTCCTA+TGG + chr3_3:78190690-78190709 Msa0475130:CDS 30.0%
CCTTATTATTATCCTCCTAT+GGG + chr3_3:78190691-78190710 Msa0475130:CDS 30.0%
!! TTAAAAGTGTTTGTGTCAGT+TGG + chr3_3:78191031-78191050 Msa0475130:intron 30.0%
! ATATCAGCGTTTTATAGCAA+CGG - chr3_3:78191097-78191116 None:intergenic 30.0%
ACAGTGTTGCATATGTATTT+AGG + chr3_3:78191258-78191277 Msa0475130:intron 30.0%
! TAGATATTTCATTGGTTGGT+TGG + chr3_3:78191428-78191447 Msa0475130:intron 30.0%
ATACATTGGACTAAAACAGA+AGG - chr3_3:78191596-78191615 None:intergenic 30.0%
TGAGACAAAAAGAGATACAT+TGG - chr3_3:78191610-78191629 None:intergenic 30.0%
!! GTTCTGCTTTTCTTAGATTT+CGG + chr3_3:78191718-78191737 Msa0475130:intron 30.0%
!! GGATTATTATTGACTTAGTC+GGG + chr3_3:78192096-78192115 Msa0475130:intron 30.0%
!! GATTATTATTGACTTAGTCG+GGG + chr3_3:78192097-78192116 Msa0475130:intron 30.0%
!! ATTATTATTGACTTAGTCGG+GGG + chr3_3:78192098-78192117 Msa0475130:intron 30.0%
TTTAAACGCTCAAAAGACTA+TGG + chr3_3:78192177-78192196 Msa0475130:intron 30.0%
!! AACTGTGATGTGTTTTTATC+TGG + chr3_3:78192335-78192354 Msa0475130:intron 30.0%
!! ACTGTGATGTGTTTTTATCT+GGG + chr3_3:78192336-78192355 Msa0475130:intron 30.0%
GTGAACAATGACAGTTTAAA+TGG + chr3_3:78192367-78192386 Msa0475130:intron 30.0%
! TTTATTGTTATTGTAGGTGG+TGG + chr3_3:78192566-78192585 Msa0475130:intron 30.0%
CATTAAATATGCTTTAGCCT+GGG + chr3_3:78192634-78192653 Msa0475130:three_prime_UTR 30.0%
ATAAGATAATTGATTGCTGG+AGG - chr3_3:78192681-78192700 None:intergenic 30.0%
CATCAATTAAATTAAGCCCT+AGG - chr3_3:78192712-78192731 None:intergenic 30.0%
CTAGGGCTTAATTTAATTGA+TGG + chr3_3:78192710-78192729 Msa0475130:three_prime_UTR 30.0%
AATGGAATAACAACATAAGC+AGG - chr3_3:78193036-78193055 None:intergenic 30.0%
CTGGAAGAAAAAAATCAGAA+TGG - chr3_3:78193054-78193073 None:intergenic 30.0%
!!! TCTGATTTTTTTCTTCCAGT+TGG + chr3_3:78193055-78193074 Msa0475130:three_prime_UTR 30.0%
!!! GTGTTGCTTGGAATTTTTTT+AGG + chr3_3:78193216-78193235 Msa0475130:three_prime_UTR 30.0%
TCAAGTTAAAAGGTTCTTGA+TGG - chr3_3:78193288-78193307 None:intergenic 30.0%
TTGGATGATTGGATAAGGTA+GGG - chr3_3:78190119-78190138 None:intergenic 35.0%
TTTGGATGATTGGATAAGGT+AGG - chr3_3:78190120-78190139 None:intergenic 35.0%
GGAATTGTGAATTCAATGGA+AGG - chr3_3:78190151-78190170 None:intergenic 35.0%
!! TTTTGAGGAGTAACAATTGG+TGG - chr3_3:78190188-78190207 None:intergenic 35.0%
AACAACAGCTTCAAATGTTC+TGG + chr3_3:78190323-78190342 Msa0475130:CDS 35.0%
TTCAATTTCTTGACGTTGGT+AGG - chr3_3:78190350-78190369 None:intergenic 35.0%
AATGAAAAGCTCACAAGCTT+TGG - chr3_3:78190482-78190501 None:intergenic 35.0%
ATATTGCTGCTGCTATTACT+AGG + chr3_3:78190569-78190588 Msa0475130:CDS 35.0%
TCATCTTTAATCTCGTCTCT+CGG - chr3_3:78190628-78190647 None:intergenic 35.0%
CCCATAGGAGGATAATAATA+AGG - chr3_3:78190694-78190713 None:intergenic 35.0%
ATCGAACAAAATGATACCTC+TGG - chr3_3:78190879-78190898 None:intergenic 35.0%
TGTGCTTACAAAGAGATCTT+TGG + chr3_3:78190907-78190926 Msa0475130:intron 35.0%
GTGCTTACAAAGAGATCTTT+GGG + chr3_3:78190908-78190927 Msa0475130:intron 35.0%
TGCTTACAAAGAGATCTTTG+GGG + chr3_3:78190909-78190928 Msa0475130:intron 35.0%
GGAATATGAATCACGAACAT+CGG + chr3_3:78190947-78190966 Msa0475130:intron 35.0%
!! TGTCACTTTGGTTCAATGTA+TGG - chr3_3:78191241-78191260 None:intergenic 35.0%
GTGTTGCATATGTATTTAGG+AGG + chr3_3:78191261-78191280 Msa0475130:intron 35.0%
! TTAGGAGGTCTATTTTGTGT+TGG + chr3_3:78191276-78191295 Msa0475130:intron 35.0%
!!! GGGAGTGTTAAAATGCATTT+TGG + chr3_3:78191357-78191376 Msa0475130:intron 35.0%
! AGTTGCATTTTCCATTTCAC+TGG + chr3_3:78191685-78191704 Msa0475130:intron 35.0%
! GTTGCATTTTCCATTTCACT+GGG + chr3_3:78191686-78191705 Msa0475130:intron 35.0%
CGAGATTTATATTTGCACTG+AGG + chr3_3:78191769-78191788 Msa0475130:intron 35.0%
!! TATTATGCTTTTGCTGTGAG+AGG + chr3_3:78191793-78191812 Msa0475130:intron 35.0%
ATTTATAGGTGTGGCTGATT+TGG + chr3_3:78191907-78191926 Msa0475130:intron 35.0%
!! AAACTTTGATGGCCTTGTTA+TGG + chr3_3:78192075-78192094 Msa0475130:intron 35.0%
! TTGGTTGTTGTTGTTAGGTT+AGG + chr3_3:78192244-78192263 Msa0475130:intron 35.0%
TCTAATCAATGAATTGGGTC+AGG - chr3_3:78192300-78192319 None:intergenic 35.0%
!! TGATGTGTTTTTATCTGGGA+AGG + chr3_3:78192340-78192359 Msa0475130:intron 35.0%
!! GATGTGTTTTTATCTGGGAA+GGG + chr3_3:78192341-78192360 Msa0475130:intron 35.0%
!! ATGTGTTTTTATCTGGGAAG+GGG + chr3_3:78192342-78192361 Msa0475130:intron 35.0%
CCAGGCTAAAGCATATTTAA+TGG - chr3_3:78192636-78192655 None:intergenic 35.0%
CCATTAAATATGCTTTAGCC+TGG + chr3_3:78192633-78192652 Msa0475130:three_prime_UTR 35.0%
CCACATTTACAAGATTATGC+AGG - chr3_3:78192782-78192801 None:intergenic 35.0%
CCTGCATAATCTTGTAAATG+TGG + chr3_3:78192779-78192798 Msa0475130:three_prime_UTR 35.0%
AATGGTTTCAATGCCTCATA+TGG + chr3_3:78193113-78193132 Msa0475130:three_prime_UTR 35.0%
AGCAAAAAGGAAACCATATG+AGG - chr3_3:78193129-78193148 None:intergenic 35.0%
GTCAAGACTTAAAAAGATGC+TGG + chr3_3:78193184-78193203 Msa0475130:three_prime_UTR 35.0%
TGTTTCACATATTGCACAGA+AGG - chr3_3:78193366-78193385 None:intergenic 35.0%
TTTCCAATGATACTTAACGG+AGG + chr3_3:78193435-78193454 Msa0475130:three_prime_UTR 35.0%
!!! TTGGTGGCTGTTGATTTTGA+TGG - chr3_3:78190172-78190191 None:intergenic 40.0%
! GTGTTGGATATTGTTGTTGC+TGG - chr3_3:78190249-78190268 None:intergenic 40.0%
TGTTGGAGAAGATGTTGGAA+TGG - chr3_3:78190298-78190317 None:intergenic 40.0%
! GTTGTTGTTGGAGAAGATGT+TGG - chr3_3:78190303-78190322 None:intergenic 40.0%
! GAAGCTGTTGTTGTTGTTGT+TGG - chr3_3:78190315-78190334 None:intergenic 40.0%
CGTGTTCAATTTCTTGACGT+TGG - chr3_3:78190354-78190373 None:intergenic 40.0%
! CAAGCTTTGGCAAAGAGAAT+TGG - chr3_3:78190469-78190488 None:intergenic 40.0%
TTGAACTCACCATTCGTTCT+TGG + chr3_3:78190503-78190522 Msa0475130:CDS 40.0%
GCTTACAAAGAGATCTTTGG+GGG + chr3_3:78190910-78190929 Msa0475130:intron 40.0%
! TTGGGGGTGAATTTTTGTCT+TGG + chr3_3:78190926-78190945 Msa0475130:intron 40.0%
TCAGTGGTATAGATGTCATG+TGG - chr3_3:78191149-78191168 None:intergenic 40.0%
CATCTATACCACTGACATGT+TGG + chr3_3:78191154-78191173 Msa0475130:intron 40.0%
! CATATGCAACACTGTCACTT+TGG - chr3_3:78191253-78191272 None:intergenic 40.0%
!! AGGTCTATTTTGTGTTGGTG+AGG + chr3_3:78191281-78191300 Msa0475130:intron 40.0%
!! TATTTTGTGTTGGTGAGGCT+TGG + chr3_3:78191286-78191305 Msa0475130:intron 40.0%
!! ATTTTGTGTTGGTGAGGCTT+GGG + chr3_3:78191287-78191306 Msa0475130:intron 40.0%
!! TCTACGATCCGTTTTTGACA+AGG - chr3_3:78191652-78191671 None:intergenic 40.0%
CTTTCTCATGCACAAACTAC+TGG + chr3_3:78192148-78192167 Msa0475130:intron 40.0%
! AAGGCTTGGTTGTTGTTGTT+AGG + chr3_3:78192239-78192258 Msa0475130:intron 40.0%
TCAATGAATTGGGTCAGGTT+GGG - chr3_3:78192295-78192314 None:intergenic 40.0%
ATCAATGAATTGGGTCAGGT+TGG - chr3_3:78192296-78192315 None:intergenic 40.0%
TGGAAGCAGAAAATGCTACT+AGG - chr3_3:78192616-78192635 None:intergenic 40.0%
CTAAATCCTAACAGTTTCCC+AGG - chr3_3:78192654-78192673 None:intergenic 40.0%
TCATGTACATCTGTGCTTCA+AGG + chr3_3:78192970-78192989 Msa0475130:three_prime_UTR 40.0%
AACAAGACAAACAAGCCAAC+TGG - chr3_3:78193073-78193092 None:intergenic 40.0%
TCACCTCCGTTAAGTATCAT+TGG - chr3_3:78193441-78193460 None:intergenic 40.0%
ATTGGATAAGGTAGGGCCTA+CGG - chr3_3:78190112-78190131 None:intergenic 45.0%
ATATCCAACACCTTCACCCA+CGG + chr3_3:78190258-78190277 Msa0475130:CDS 45.0%
AGAAGATGTTGGAATGGTGG+TGG - chr3_3:78190292-78190311 None:intergenic 45.0%
TGGAGAAGATGTTGGAATGG+TGG - chr3_3:78190295-78190314 None:intergenic 45.0%
TGCGTGCTAATGGAAGTTGA+TGG - chr3_3:78190393-78190412 None:intergenic 45.0%
AGCATGAAGCCAAGAACGAA+TGG - chr3_3:78190515-78190534 None:intergenic 45.0%
CAACCTGCTGGAATGATGAT+TGG + chr3_3:78190715-78190734 Msa0475130:CDS 45.0%
TGAACATAAACACCGGTAGC+CGG - chr3_3:78190757-78190776 None:intergenic 45.0%
! GATGATGGTTCTTATGCTGG+TGG + chr3_3:78190820-78190839 Msa0475130:CDS 45.0%
GGACAACATCAATGACACGT+AGG + chr3_3:78190968-78190987 Msa0475130:intron 45.0%
!! TTTTGTGTTGGTGAGGCTTG+GGG + chr3_3:78191288-78191307 Msa0475130:intron 45.0%
!! TGCTTTTGCTGTGAGAGGAA+TGG + chr3_3:78191798-78191817 Msa0475130:intron 45.0%
ACTTAGTCGGGGGTTCATAT+AGG + chr3_3:78192108-78192127 Msa0475130:intron 45.0%
CTTAGTCGGGGGTTCATATA+GGG + chr3_3:78192109-78192128 Msa0475130:intron 45.0%
GGTTCATATAGGGAAGGTTC+TGG + chr3_3:78192119-78192138 Msa0475130:intron 45.0%
CATGTAACCGATCCCACTTA+GGG + chr3_3:78192212-78192231 Msa0475130:intron 45.0%
ATGTAACCGATCCCACTTAG+GGG + chr3_3:78192213-78192232 Msa0475130:intron 45.0%
CTTATTCCCCTAAGTGGGAT+CGG - chr3_3:78192222-78192241 None:intergenic 45.0%
!! CAAGCCTTATTCCCCTAAGT+GGG - chr3_3:78192227-78192246 None:intergenic 45.0%
! CAATGAATTGGGTCAGGTTG+GGG - chr3_3:78192294-78192313 None:intergenic 45.0%
!! TGTTTTTATCTGGGAAGGGG+TGG + chr3_3:78192345-78192364 Msa0475130:intron 45.0%
ACTTGCACTCTCGCATAATG+TGG + chr3_3:78192454-78192473 Msa0475130:intron 45.0%
! GTTATTGTAGGTGGTGGTAG+TGG + chr3_3:78192572-78192591 Msa0475130:intron 45.0%
CTTTAGCCTGGGAAACTGTT+AGG + chr3_3:78192645-78192664 Msa0475130:three_prime_UTR 45.0%
TGCACAGAAGGACCATTGTT+CGG - chr3_3:78193354-78193373 None:intergenic 45.0%
!!! TGTTTTTATTAATTATTTAT+AGG + chr3_3:78191893-78191912 Msa0475130:intron 5.0%
GGGGAAAGAAAAGAAGTCCC+AGG + chr3_3:78190083-78190102 Msa0475130:five_prime_UTR 50.0%
!! ATTGTTGGTGCTGCTGCTAG+TGG + chr3_3:78190664-78190683 Msa0475130:CDS 50.0%
ATTCCAGCAGGTTGTCCCAT+AGG - chr3_3:78190709-78190728 None:intergenic 50.0%
CGACCAATCATCATTCCAGC+AGG - chr3_3:78190721-78190740 None:intergenic 50.0%
AGGCGGCTGAACATAAACAC+CGG - chr3_3:78190764-78190783 None:intergenic 50.0%
TTATGTTCAGCCGCCTTCTC+AGG + chr3_3:78190768-78190787 Msa0475130:CDS 50.0%
TTGGCAGTCTGTTTGGCAGA+CGG + chr3_3:78190792-78190811 Msa0475130:CDS 50.0%
! GCGGATGATGGTTCTTATGC+TGG + chr3_3:78190817-78190836 Msa0475130:CDS 50.0%
GATGGTTCTTATGCTGGTGG+TGG + chr3_3:78190823-78190842 Msa0475130:CDS 50.0%
!! TCTTATGCTGGTGGTGGTGT+TGG + chr3_3:78190829-78190848 Msa0475130:CDS 50.0%
GGCGTACGTCTAACACATGT+TGG - chr3_3:78191060-78191079 None:intergenic 50.0%
GCAACGGCACTTCAGATTGA+AGG - chr3_3:78191081-78191100 None:intergenic 50.0%
TGCTGGTACCAACATGTCAG+TGG - chr3_3:78191165-78191184 None:intergenic 50.0%
AGTGTCAGGGTTTCACTGGT+TGG + chr3_3:78191311-78191330 Msa0475130:intron 50.0%
CCAACTAGCACCCAGTGAAA+TGG - chr3_3:78191699-78191718 None:intergenic 50.0%
CCATTTCACTGGGTGCTAGT+TGG + chr3_3:78191696-78191715 Msa0475130:intron 50.0%
! TTTGCTGTGAGAGGAATGGC+CGG + chr3_3:78191802-78191821 Msa0475130:intron 50.0%
CCTAAGTGGGATCGGTTACA+TGG - chr3_3:78192214-78192233 None:intergenic 50.0%
CCATGTAACCGATCCCACTT+AGG + chr3_3:78192211-78192230 Msa0475130:intron 50.0%
CGATCCCACTTAGGGGAATA+AGG + chr3_3:78192220-78192239 Msa0475130:intron 50.0%
!! CCAAGCCTTATTCCCCTAAG+TGG - chr3_3:78192228-78192247 None:intergenic 50.0%
CCACTTAGGGGAATAAGGCT+TGG + chr3_3:78192225-78192244 Msa0475130:intron 50.0%
ATCTGTGCTTCAAGGCACAC+AGG + chr3_3:78192978-78192997 Msa0475130:three_prime_UTR 50.0%
CACTCAGCTGCTGAGCAAAA+AGG - chr3_3:78193142-78193161 None:intergenic 50.0%
! TGGACTTCTGCAGTGTTGCT+TGG + chr3_3:78193204-78193223 Msa0475130:three_prime_UTR 50.0%
GCTGCTGCTGCTGCTATTGT+TGG + chr3_3:78190649-78190668 Msa0475130:CDS 55.0%
ACAGACTGCCAAGCCTGAGA+AGG - chr3_3:78190784-78190803 None:intergenic 55.0%
CTCAGGCTTGGCAGTCTGTT+TGG + chr3_3:78190785-78190804 Msa0475130:CDS 55.0%
TGGCAGTCTGTTTGGCAGAC+GGG + chr3_3:78190793-78190812 Msa0475130:CDS 55.0%
GTTGGCAGTGGTCAGCACAA+TGG + chr3_3:78190847-78190866 Msa0475130:CDS 55.0%
AGTGGTCAGCACAATGGCGA+TGG + chr3_3:78190853-78190872 Msa0475130:CDS 55.0%
GTCGGGGGTTCATATAGGGA+AGG + chr3_3:78192113-78192132 Msa0475130:intron 55.0%
AAGAAGTCCCAGGCTGCCGT+AGG + chr3_3:78190093-78190112 Msa0475130:five_prime_UTR 60.0%
! ACTGCCGTGGGTGAAGGTGT+TGG - chr3_3:78190265-78190284 None:intergenic 60.0%
GGTGTAACTGCCGTGGGTGA+AGG - chr3_3:78190271-78190290 None:intergenic 60.0%
! GGTGGTGGTGTAACTGCCGT+GGG - chr3_3:78190277-78190296 None:intergenic 60.0%
!! TGGTGGTGGTGTAACTGCCG+TGG - chr3_3:78190278-78190297 None:intergenic 60.0%
CCAGCAGGTTGTCCCATAGG+AGG - chr3_3:78190706-78190725 None:intergenic 60.0%
CCTCCTATGGGACAACCTGC+TGG + chr3_3:78190703-78190722 Msa0475130:CDS 60.0%
TGGTCGTCCCGCTGTTGATC+CGG + chr3_3:78190735-78190754 Msa0475130:CDS 60.0%
ACCGGTAGCCGGATCAACAG+CGG - chr3_3:78190746-78190765 None:intergenic 60.0%
TTCAGCCGCCTTCTCAGGCT+TGG + chr3_3:78190773-78190792 Msa0475130:CDS 60.0%
GACTGCCAAGCCTGAGAAGG+CGG - chr3_3:78190781-78190800 None:intergenic 60.0%
GTCTGTTTGGCAGACGGGAG+CGG + chr3_3:78190798-78190817 Msa0475130:CDS 60.0%
AGCACAATGGCGATGGCCAG+AGG + chr3_3:78190860-78190879 Msa0475130:CDS 60.0%
!! GTGAGGCTTGGGGAGTGTCA+GGG + chr3_3:78191298-78191317 Msa0475130:intron 60.0%
!! GGGGAGTGTCAGGGTTTCAC+TGG + chr3_3:78191307-78191326 Msa0475130:intron 60.0%
ACAGTCCATCAGCAGCAGCG+CGG - chr3_3:78193166-78193185 None:intergenic 60.0%
CCGGTAGCCGGATCAACAGC+GGG - chr3_3:78190745-78190764 None:intergenic 65.0%
CCCGCTGTTGATCCGGCTAC+CGG + chr3_3:78190742-78190761 Msa0475130:CDS 65.0%
TGGCAGACGGGAGCGGATGA+TGG + chr3_3:78190805-78190824 Msa0475130:CDS 65.0%
!! GCTGGTGGTGGTGTTGGCAG+TGG + chr3_3:78190835-78190854 Msa0475130:CDS 65.0%
!! GGTGAGGCTTGGGGAGTGTC+AGG + chr3_3:78191297-78191316 Msa0475130:intron 65.0%
AGTGACCGCGCTGCTGCTGA+TGG + chr3_3:78193158-78193177 Msa0475130:three_prime_UTR 65.0%
GGTAGGGCCTACGGCAGCCT+GGG - chr3_3:78190103-78190122 None:intergenic 70.0%
AGGTAGGGCCTACGGCAGCC+TGG - chr3_3:78190104-78190123 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 78190046 78193529 78190046 ID=Msa0475130;Name=Msa0475130
chr3_3 mRNA 78190046 78193529 78190046 ID=Msa0475130-mRNA-1;Parent=Msa0475130;Name=Msa0475130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=183|1|1|1|1|1|2|938|220
chr3_3 exon 78190046 78190881 78190046 ID=Msa0475130-mRNA-1:exon:21043;Parent=Msa0475130-mRNA-1
chr3_3 exon 78192582 78193529 78192582 ID=Msa0475130-mRNA-1:exon:21044;Parent=Msa0475130-mRNA-1
chr3_3 five_prime_UTR 78190046 78190228 78190046 ID=Msa0475130-mRNA-1:five_prime_utr;Parent=Msa0475130-mRNA-1
chr3_3 CDS 78190229 78190881 78190229 ID=Msa0475130-mRNA-1:cds;Parent=Msa0475130-mRNA-1
chr3_3 CDS 78192582 78192591 78192582 ID=Msa0475130-mRNA-1:cds;Parent=Msa0475130-mRNA-1
chr3_3 three_prime_UTR 78192592 78193529 78192592 ID=Msa0475130-mRNA-1:three_prime_utr;Parent=Msa0475130-mRNA-1
Gene Sequence

>Msa0475130

ATGGAGAACAACAACAACCAGCAACAACAATATCCAACACCTTCACCCACGGCAGTTACACCACCACCATTCCAACATCTTCTCCAACAACAACAACAACAGCTTCAAATGTTCTGGTCCTACCAACGTCAAGAAATTGAACACGTCAACGATTTCAAAAACCATCAACTTCCATTAGCACGCATTAAGAAAATCATGAAAGCTGATGAAGACGTTCGAATGATTTCTGCAGAAGCACCAATTCTCTTTGCCAAAGCTTGTGAGCTTTTCATTCTTGAACTCACCATTCGTTCTTGGCTTCATGCTGAAGAGAATAAACGACGAACTCTTCAGAAAAATGATATTGCTGCTGCTATTACTAGGACTGATATTTTTGATTTTTTGGTTGATATTGTTCCGAGAGACGAGATTAAAGATGAAGCTGCTGCTGCTGCTATTGTTGGTGCTGCTGCTAGTGGTGTTCCTTATTATTATCCTCCTATGGGACAACCTGCTGGAATGATGATTGGTCGTCCCGCTGTTGATCCGGCTACCGGTGTTTATGTTCAGCCGCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACGGGAGCGGATGATGGTTCTTATGCTGGTGGTGGTGTTGGCAGTGGTCAGCACAATGGCGATGGCCAGAGGTGGTGGTAG

Protein sequence

>Msa0475130

MENNNNQQQQYPTPSPTAVTPPPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAAAAIVGAAASGVPYYYPPMGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGADDGSYAGGGVGSGQHNGDGQRWW*