Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082100 | XP_003591459.2 | 80.893 | 403 | 10 | 2 | 1 | 336 | 1 | 403 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082100 | sp|Q16773|KAT1_HUMAN | 30.969 | 423 | 177 | 10 | 6 | 325 | 7 | 417 | 3.20e-53 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082100 | G7IEH9 | 80.893 | 403 | 10 | 2 | 1 | 336 | 1 | 403 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024070 | Msa0082100 | 0.815146 | 1.073728e-51 | -8.615850e-47 |
| Msa0030640 | Msa0082100 | 0.834492 | 2.905899e-56 | -8.615850e-47 |
| Msa0047400 | Msa0082100 | 0.821136 | 4.740219e-53 | -8.615850e-47 |
| Msa0075080 | Msa0082100 | 0.814070 | 1.858190e-51 | -8.615850e-47 |
| Msa0082100 | Msa0102290 | 0.804662 | 1.939509e-49 | -8.615850e-47 |
| Msa0082100 | Msa0122930 | 0.811419 | 7.068196e-51 | -8.615850e-47 |
| Msa0082100 | Msa0128490 | 0.819455 | 1.150980e-52 | -8.615850e-47 |
| Msa0082100 | Msa0147070 | 0.825262 | 5.159054e-54 | -8.615850e-47 |
| Msa0082100 | Msa0170550 | 0.808603 | 2.855687e-50 | -8.615850e-47 |
| Msa0082100 | Msa0174510 | 0.851390 | 9.157406e-61 | -8.615850e-47 |
| Msa0082100 | Msa0284980 | 0.814772 | 1.299622e-51 | -8.615850e-47 |
| Msa0082100 | Msa0288300 | 0.813562 | 2.403622e-51 | -8.615850e-47 |
| Msa0082100 | Msa0288350 | 0.808736 | 2.674487e-50 | -8.615850e-47 |
| Msa0082100 | Msa0288360 | 0.800293 | 1.542261e-48 | -8.615850e-47 |
| Msa0082100 | Msa0371050 | 0.836773 | 7.688544e-57 | -8.615850e-47 |
| Msa0082100 | Msa0383110 | 0.820119 | 8.116181e-53 | -8.615850e-47 |
| Msa0082100 | Msa0415860 | 0.810614 | 1.056008e-50 | -8.615850e-47 |
| Msa0082100 | Msa0436430 | 0.810515 | 1.109401e-50 | -8.615850e-47 |
| Msa0082100 | Msa0439130 | 0.802636 | 5.107373e-49 | -8.615850e-47 |
| Msa0082100 | Msa0475130 | 0.801774 | 7.682646e-49 | -8.615850e-47 |
| Msa0082100 | Msa0485350 | 0.806057 | 9.895267e-50 | -8.615850e-47 |
| Msa0082100 | Msa0506740 | 0.800720 | 1.262754e-48 | -8.615850e-47 |
| Msa0082100 | Msa0524570 | 0.808336 | 3.255844e-50 | -8.615850e-47 |
| Msa0082100 | Msa0583810 | 0.806522 | 7.897043e-50 | -8.615850e-47 |
| Msa0082100 | Msa0621870 | 0.800767 | 1.234665e-48 | -8.615850e-47 |
| Msa0082100 | Msa0649140 | 0.822762 | 1.990997e-53 | -8.615850e-47 |
| Msa0082100 | Msa0695470 | 0.804396 | 2.204258e-49 | -8.615850e-47 |
| Msa0082100 | Msa0748470 | 0.806660 | 7.383189e-50 | -8.615850e-47 |
| Msa0082100 | Msa0749940 | 0.807538 | 4.813296e-50 | -8.615850e-47 |
| Msa0082100 | Msa0762860 | 0.803015 | 4.264096e-49 | -8.615850e-47 |
| Msa0082100 | Msa0788490 | 0.804744 | 1.864442e-49 | -8.615850e-47 |
| Msa0082100 | Msa0842660 | 0.805075 | 1.590118e-49 | -8.615850e-47 |
| Msa0082100 | Msa0879820 | 0.815158 | 1.067135e-51 | -8.615850e-47 |
| Msa0082100 | Msa0880200 | 0.809679 | 1.679521e-50 | -8.615850e-47 |
| Msa0082100 | Msa0934800 | 0.822595 | 2.177752e-53 | -8.615850e-47 |
| Msa0082100 | Msa0940400 | 0.808171 | 3.530128e-50 | -8.615850e-47 |
| Msa0082100 | Msa0967940 | 0.800576 | 1.350972e-48 | -8.615850e-47 |
| Msa0082100 | Msa1061420 | 0.814247 | 1.697494e-51 | -8.615850e-47 |
| Msa0082100 | Msa1134840 | 0.805055 | 1.605538e-49 | -8.615850e-47 |
| Msa0082100 | Msa1177300 | 0.827465 | 1.540978e-54 | -8.615850e-47 |
| Msa0082100 | Msa1190670 | 0.809796 | 1.584695e-50 | -8.615850e-47 |
| Msa0082100 | Msa1206500 | 0.802274 | 6.063155e-49 | -8.615850e-47 |
| Msa0082100 | Msa1208630 | 0.801186 | 1.013931e-48 | -8.615850e-47 |
| Msa0082100 | Msa1244940 | 0.802779 | 4.771181e-49 | -8.615850e-47 |
| Msa0082100 | Msa1263460 | 0.800471 | 1.418785e-48 | -8.615850e-47 |
| Msa0082100 | Msa1269550 | 0.808811 | 2.577986e-50 | -8.615850e-47 |
| Msa0082100 | Msa1298180 | 0.808984 | 2.367322e-50 | -8.615850e-47 |
| Msa0082100 | Msa1317090 | 0.824842 | 6.482118e-54 | -8.615850e-47 |
| Msa0082100 | Msa1325260 | 0.805762 | 1.141640e-49 | -8.615850e-47 |
| Msa0082100 | Msa1375120 | 0.825183 | 5.385018e-54 | -8.615850e-47 |
| Msa0082100 | Msa1376560 | 0.814041 | 1.885025e-51 | -8.615850e-47 |
| Msa0082100 | Msa1379930 | 0.810149 | 1.330892e-50 | -8.615850e-47 |
| Msa0082100 | Msa1387650 | 0.804710 | 1.895897e-49 | -8.615850e-47 |
| Msa0082100 | Msa1412750 | 0.823533 | 1.315818e-53 | -8.615850e-47 |
| Msa0082100 | Msa1444750 | 0.828727 | 7.655001e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082100 | MtrunA17_Chr1g0195061 | 80.893 | 403 | 10 | 2 | 1 | 336 | 1 | 403 | 0.0 | 645 |
| Msa0082100 | MtrunA17_Chr3g0114811 | 33.079 | 393 | 182 | 6 | 4 | 327 | 63 | 443 | 3.35e-65 | 212 |
| Msa0082100 | MtrunA17_Chr3g0114831 | 31.298 | 393 | 189 | 6 | 4 | 327 | 426 | 806 | 1.94e-58 | 201 |
| Msa0082100 | MtrunA17_Chr3g0114831 | 27.928 | 333 | 169 | 6 | 4 | 279 | 10 | 328 | 7.96e-34 | 132 |
| Msa0082100 | MtrunA17_Chr8g0382671 | 28.871 | 381 | 172 | 11 | 30 | 327 | 102 | 466 | 4.09e-29 | 116 |
| Msa0082100 | MtrunA17_Chr7g0267911 | 33.083 | 266 | 128 | 7 | 96 | 327 | 215 | 464 | 7.26e-28 | 113 |
| Msa0082100 | MtrunA17_Chr8g0360241 | 27.826 | 230 | 123 | 9 | 89 | 280 | 155 | 379 | 8.14e-14 | 72.0 |
| Msa0082100 | MtrunA17_Chr2g0324801 | 25.571 | 219 | 127 | 8 | 96 | 280 | 131 | 347 | 4.12e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082100 | AT1G77670.1 | 33.333 | 393 | 181 | 6 | 4 | 327 | 56 | 436 | 7.03e-68 | 219 |
| Msa0082100 | AT2G22250.1 | 27.202 | 386 | 174 | 10 | 30 | 328 | 55 | 420 | 2.67e-30 | 119 |
| Msa0082100 | AT2G22250.3 | 27.202 | 386 | 174 | 10 | 30 | 328 | 102 | 467 | 4.18e-30 | 119 |
| Msa0082100 | AT2G22250.2 | 27.202 | 386 | 174 | 10 | 30 | 328 | 102 | 467 | 4.18e-30 | 119 |
| Msa0082100 | AT5G36160.1 | 26.667 | 240 | 131 | 9 | 76 | 281 | 154 | 382 | 2.09e-17 | 83.2 |
| Msa0082100 | AT2G24850.1 | 25.581 | 258 | 140 | 11 | 76 | 293 | 162 | 407 | 5.66e-16 | 79.0 |
| Msa0082100 | AT4G28410.2 | 26.364 | 220 | 128 | 7 | 97 | 283 | 192 | 410 | 4.04e-15 | 76.3 |
| Msa0082100 | AT4G28410.1 | 26.606 | 218 | 126 | 7 | 97 | 281 | 192 | 408 | 4.55e-15 | 76.3 |
| Msa0082100 | AT4G23590.1 | 23.311 | 296 | 176 | 10 | 60 | 320 | 136 | 415 | 6.31e-15 | 75.9 |
| Msa0082100 | AT2G20610.2 | 22.490 | 249 | 146 | 7 | 76 | 289 | 178 | 414 | 7.63e-12 | 66.2 |
| Msa0082100 | AT2G20610.1 | 22.222 | 243 | 142 | 7 | 76 | 283 | 178 | 408 | 1.62e-11 | 65.5 |
| Msa0082100 | AT5G53970.1 | 26.639 | 244 | 124 | 9 | 76 | 280 | 145 | 372 | 2.85e-11 | 64.7 |
| Msa0082100 | AT4G28420.1 | 28.333 | 120 | 76 | 2 | 76 | 195 | 172 | 281 | 7.79e-11 | 63.2 |
Find 97 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATTTCCTTCACCATTT+TGG | 0.194310 | 1_2:-60900869 | None:intergenic |
| TTCTAACCTATTCAATATAA+TGG | 0.213603 | 1_2:-60901807 | None:intergenic |
| CAAATAGCTACATCCGTTTC+AGG | 0.219246 | 1_2:-60900907 | None:intergenic |
| GTAACTAGCTAGCTTGTATT+TGG | 0.232848 | 1_2:+60903565 | Msa0082100:three_prime_UTR |
| AATTAATAAAGTTTGTAATA+TGG | 0.233403 | 1_2:+60903508 | Msa0082100:three_prime_UTR |
| CTGTTATAGCCAGGCAATTT+CGG | 0.264498 | 1_2:-60902096 | None:intergenic |
| AGGCAAGGGATATATGTTTC+TGG | 0.273218 | 1_2:-60902483 | None:intergenic |
| CATCTTGCGCTATATTAAAT+TGG | 0.276815 | 1_2:+60903422 | Msa0082100:exon |
| ATATCCCTTGCCTCATTTCC+AGG | 0.299458 | 1_2:+60902493 | Msa0082100:CDS |
| ATAGTCCGTTCTTGCATTCC+TGG | 0.309721 | 1_2:-60902511 | None:intergenic |
| ACGTAGAGTACTTGTGTAAC+AGG | 0.310824 | 1_2:+60900521 | None:intergenic |
| GCCGGGGTGGTGGCTGTTCC+AGG | 0.313509 | 1_2:+60903245 | Msa0082100:CDS |
| TTGGTTGAGGTCGGAATTAA+TGG | 0.319771 | 1_2:-60900733 | None:intergenic |
| TAGAAGTTTCATTTGATGAT+AGG | 0.323856 | 1_2:-60903289 | None:intergenic |
| CAAACCTGATGTATCTCTTC+TGG | 0.339394 | 1_2:-60903328 | None:intergenic |
| TGGAGAGGAGCAGGGAAGTC+AGG | 0.351842 | 1_2:-60900687 | None:intergenic |
| TAAATTGGTAGAAAGAATAA+TGG | 0.355047 | 1_2:+60903437 | Msa0082100:exon |
| CTTAGTGATTCAAAGTAGTC+AGG | 0.377117 | 1_2:-60902811 | None:intergenic |
| GGTGGTGGCTGTTCCAGGAC+AGG | 0.388445 | 1_2:+60903250 | Msa0082100:CDS |
| ATGTGAACACTTGGCCAAAA+TGG | 0.390216 | 1_2:+60900855 | Msa0082100:CDS |
| AAAGAAAGAAAGGAAAAGAA+TGG | 0.401522 | 1_2:+60900560 | Msa0082100:exon |
| CTAAAGCCATTATATTGAAT+AGG | 0.402815 | 1_2:+60901801 | Msa0082100:CDS |
| ATTCCGACCTCAACCAATAC+AGG | 0.421253 | 1_2:+60900739 | Msa0082100:CDS |
| AACAGTCCTCACAATCCAAC+TGG | 0.421799 | 1_2:+60902022 | Msa0082100:intron |
| ATTTCGGCTGCAGCATGCTC+CGG | 0.423388 | 1_2:-60902080 | None:intergenic |
| GATAAGGAAGAAAGAAAGAA+AGG | 0.431917 | 1_2:+60900550 | Msa0082100:five_prime_UTR |
| GTCAAAGCAGCTTCCTGAAA+AGG | 0.433261 | 1_2:-60902772 | None:intergenic |
| GACGAACTTGAGACTATTGC+CGG | 0.437073 | 1_2:+60902061 | Msa0082100:CDS |
| CTGCAAGAGCGAGACAACTT+TGG | 0.441179 | 1_2:+60903355 | Msa0082100:CDS |
| GTCGGAATTAATGGCGGAAA+CGG | 0.459098 | 1_2:-60900724 | None:intergenic |
| TGTTAACTGCTTAACAATGA+AGG | 0.460967 | 1_2:+60903737 | Msa0082100:three_prime_UTR |
| ATCTCCTGTAAAACCACAAT+CGG | 0.470954 | 1_2:-60903635 | None:intergenic |
| GTTGAGAAGCAGTACTAAGA+AGG | 0.475424 | 1_2:+60903664 | Msa0082100:three_prime_UTR |
| AAAGAAAGGAAAAGAATGGA+AGG | 0.476330 | 1_2:+60900564 | Msa0082100:exon |
| AAATTGGTAGAAAGAATAAT+GGG | 0.483839 | 1_2:+60903438 | Msa0082100:exon |
| TCTAAAACATTTAGTGTCAC+AGG | 0.483989 | 1_2:+60902550 | Msa0082100:CDS |
| AAAAGTTAATACTAGAAGCC+GGG | 0.486367 | 1_2:+60903228 | Msa0082100:CDS |
| TGCCGCTTGACCCGCCTAAG+TGG | 0.493928 | 1_2:+60901735 | Msa0082100:CDS |
| GAGTGCACATACATCAGAAA+GGG | 0.496352 | 1_2:-60903117 | None:intergenic |
| AAGGTGAGAGAGTTCTTGAA+TGG | 0.496498 | 1_2:-60900625 | None:intergenic |
| GTGGTGGCTGTTCCAGGACA+GGG | 0.501802 | 1_2:+60903251 | Msa0082100:CDS |
| TTCTTGCATTCCTGGAAATG+AGG | 0.505583 | 1_2:-60902503 | None:intergenic |
| ATGCTGCAGCCGAAATTGCC+TGG | 0.506689 | 1_2:+60902087 | Msa0082100:CDS |
| GCAGCTTCCTGAAAAGGAGC+TGG | 0.508572 | 1_2:-60902766 | None:intergenic |
| TATAATGGCTTTAGTTCTCT+CGG | 0.520346 | 1_2:-60901792 | None:intergenic |
| AAGATACAGTTTATACCTCA+AGG | 0.523616 | 1_2:+60903056 | Msa0082100:intron |
| GTGTAACAGGGATAGTGATA+AGG | 0.524673 | 1_2:+60900534 | Msa0082100:five_prime_UTR |
| TCTGATAGCAGATGCAATAG+AGG | 0.525077 | 1_2:-60902713 | None:intergenic |
| ATATAGCGCAAGATGCCCTT+CGG | 0.525307 | 1_2:-60903414 | None:intergenic |
| TCAGAAAGGGGACAATCCTC+AGG | 0.527257 | 1_2:-60903104 | None:intergenic |
| AGAGTGCACATACATCAGAA+AGG | 0.530239 | 1_2:-60903118 | None:intergenic |
| TTTAGATATTGACCCTGAAA+CGG | 0.531199 | 1_2:+60900894 | Msa0082100:CDS |
| GATCCAAGGTCCACTTAGGC+GGG | 0.535038 | 1_2:-60901745 | None:intergenic |
| TTAGTGATTCAAAGTAGTCA+GGG | 0.539932 | 1_2:-60902810 | None:intergenic |
| GGGACAATCCTCAGGAAGCT+CGG | 0.540948 | 1_2:-60903096 | None:intergenic |
| AATACTAGAAGCCGGGGTGG+TGG | 0.544325 | 1_2:+60903235 | Msa0082100:CDS |
| GGATCCAAGGTCCACTTAGG+CGG | 0.546057 | 1_2:-60901746 | None:intergenic |
| ATACTTCATCTGTTATAGCC+AGG | 0.547164 | 1_2:-60902105 | None:intergenic |
| AAATAGCTACATCCGTTTCA+GGG | 0.548601 | 1_2:-60900906 | None:intergenic |
| CGGAGCCGCTATGAAGATTG+AGG | 0.552400 | 1_2:+60903464 | Msa0082100:three_prime_UTR |
| GGAGAGGAGCAGGGAAGTCA+GGG | 0.560494 | 1_2:-60900686 | None:intergenic |
| CTTGGATCCAAGGTCCACTT+AGG | 0.574857 | 1_2:-60901749 | None:intergenic |
| TGACCCGCCTAAGTGGACCT+TGG | 0.575779 | 1_2:+60901742 | Msa0082100:CDS |
| ATAGCAGATGCAATAGAGGC+TGG | 0.576693 | 1_2:-60902709 | None:intergenic |
| CATTTCCAGGAATGCAAGAA+CGG | 0.578124 | 1_2:+60902506 | Msa0082100:CDS |
| AGGTGAGAGAGTTCTTGAAT+GGG | 0.582242 | 1_2:-60900624 | None:intergenic |
| CTTATTTGCCGAGCTTCCTG+AGG | 0.583945 | 1_2:+60903088 | Msa0082100:CDS |
| GAGCGAGACAACTTTGGCTG+CGG | 0.584036 | 1_2:+60903361 | Msa0082100:CDS |
| TTTAGGTTGGAGGATAGGAT+GGG | 0.584717 | 1_2:+60902678 | Msa0082100:intron |
| AAGCTCGGCAAATAAGAAGA+AGG | 0.587876 | 1_2:-60903081 | None:intergenic |
| GCAATAATTATGTCCGATTG+TGG | 0.588441 | 1_2:+60903622 | Msa0082100:three_prime_UTR |
| GTCCACTTAGGCGGGTCAAG+CGG | 0.588530 | 1_2:-60901737 | None:intergenic |
| GCAAGGTATATGTGAACACT+TGG | 0.590383 | 1_2:+60900846 | Msa0082100:CDS |
| CATTCCTGGAAATGAGGCAA+GGG | 0.592523 | 1_2:-60902497 | None:intergenic |
| CATTGTTAAGCAGTTAACAA+TGG | 0.597520 | 1_2:-60903733 | None:intergenic |
| TGTATTTCAAGGCACGTGCA+AGG | 0.600773 | 1_2:+60900829 | Msa0082100:intron |
| ACTACCAGAAGAGATACATC+AGG | 0.602541 | 1_2:+60903324 | Msa0082100:CDS |
| AATGCTATCAACCTCGCTGA+AGG | 0.607180 | 1_2:+60900660 | Msa0082100:CDS |
| GCATTCCTGGAAATGAGGCA+AGG | 0.607455 | 1_2:-60902498 | None:intergenic |
| CGTAGAGTACTTGTGTAACA+GGG | 0.607555 | 1_2:+60900522 | None:intergenic |
| AAAGTTAATACTAGAAGCCG+GGG | 0.622158 | 1_2:+60903229 | Msa0082100:CDS |
| GGAATTAATGGCGGAAACGG+CGG | 0.624454 | 1_2:-60900721 | None:intergenic |
| ACACTTGGCCAAAATGGTGA+AGG | 0.627453 | 1_2:+60900861 | Msa0082100:CDS |
| AAACCTGTATTGGTTGAGGT+CGG | 0.632186 | 1_2:-60900742 | None:intergenic |
| GTAGAAAGAATAATGGGTGA+CGG | 0.632289 | 1_2:+60903444 | Msa0082100:three_prime_UTR |
| TAGCATTGCATCTCTGAGCA+AGG | 0.649166 | 1_2:-60900644 | None:intergenic |
| AGTGATTCAAAGTAGTCAGG+GGG | 0.650203 | 1_2:-60902808 | None:intergenic |
| TAGTGATTCAAAGTAGTCAG+GGG | 0.658344 | 1_2:-60902809 | None:intergenic |
| TCCTGGAACAGCCACCACCC+CGG | 0.670992 | 1_2:-60903246 | None:intergenic |
| GTTGAGGTCGGAATTAATGG+CGG | 0.674905 | 1_2:-60900730 | None:intergenic |
| AGTGCACATACATCAGAAAG+GGG | 0.684588 | 1_2:-60903116 | None:intergenic |
| TGTATCCTCAATCTTCATAG+CGG | 0.692403 | 1_2:-60903469 | None:intergenic |
| AATAAGAAGAAGGAACCTTG+AGG | 0.699594 | 1_2:-60903071 | None:intergenic |
| AAAATGGTGAAGGAAATGCA+TGG | 0.709380 | 1_2:+60900871 | Msa0082100:CDS |
| GTTAATACTAGAAGCCGGGG+TGG | 0.713030 | 1_2:+60903232 | Msa0082100:CDS |
| GTGATTCAAAGTAGTCAGGG+GGG | 0.719527 | 1_2:-60902807 | None:intergenic |
| AGTCAGGGAAGCCTTCAGCG+AGG | 0.769775 | 1_2:-60900671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATATTTCTATAGTTTA+GGG | + | chr1_2:60901509-60901528 | Msa0082100:intron | 10.0% |
| !! | AATTAATAAAGTTTGTAATA+TGG | + | chr1_2:60903508-60903527 | Msa0082100:three_prime_UTR | 10.0% |
| !!! | CTTATATATTTCTATAGTTT+AGG | + | chr1_2:60901508-60901527 | Msa0082100:intron | 15.0% |
| !! | TAAACTGATAAACAAAACTT+GGG | - | chr1_2:60901324-60901343 | None:intergenic | 20.0% |
| !! | TTAAACTGATAAACAAAACT+TGG | - | chr1_2:60901325-60901344 | None:intergenic | 20.0% |
| !! | AATAACTTCAACAGTTAAAA+GGG | - | chr1_2:60901639-60901658 | None:intergenic | 20.0% |
| !! | TTCTAACCTATTCAATATAA+TGG | - | chr1_2:60901810-60901829 | None:intergenic | 20.0% |
| !! | CAACAAAATTTATACTAAGT+GGG | - | chr1_2:60901930-60901949 | None:intergenic | 20.0% |
| !! | ACAACAAAATTTATACTAAG+TGG | - | chr1_2:60901931-60901950 | None:intergenic | 20.0% |
| !!! | GTTCTTATTAGCTTTTAATT+TGG | + | chr1_2:60902299-60902318 | Msa0082100:intron | 20.0% |
| !! | TAAATTGGTAGAAAGAATAA+TGG | + | chr1_2:60903437-60903456 | Msa0082100:exon | 20.0% |
| !! | AAATTGGTAGAAAGAATAAT+GGG | + | chr1_2:60903438-60903457 | Msa0082100:exon | 20.0% |
| ! | AAAGAAAGAAAGGAAAAGAA+TGG | + | chr1_2:60900560-60900579 | Msa0082100:exon | 25.0% |
| ! | AGTAGATAGATTCTATGAAT+TGG | - | chr1_2:60900806-60900825 | None:intergenic | 25.0% |
| ! | TATCTACTCTTTGTATTTCA+AGG | + | chr1_2:60900818-60900837 | Msa0082100:intron | 25.0% |
| ! | CTATTATCTTAAATGATTGC+TGG | - | chr1_2:60901045-60901064 | None:intergenic | 25.0% |
| ! | TTTAATGTAAGAACATGTGT+TGG | + | chr1_2:60901071-60901090 | Msa0082100:intron | 25.0% |
| !! | ATAGTTTATGGACTAAATTG+AGG | - | chr1_2:60901391-60901410 | None:intergenic | 25.0% |
| ! | AATAGTCCATAGACTAAATA+AGG | - | chr1_2:60901422-60901441 | None:intergenic | 25.0% |
| ! | TAATCCATTAAATTAGTCCT+CGG | + | chr1_2:60901444-60901463 | Msa0082100:intron | 25.0% |
| ! | TATTGAATAAACCGTCAATT+TGG | - | chr1_2:60901536-60901555 | None:intergenic | 25.0% |
| ! | CAATAACTTCAACAGTTAAA+AGG | - | chr1_2:60901640-60901659 | None:intergenic | 25.0% |
| ! | AGTTAAGTTCACAAAAACAA+GGG | - | chr1_2:60901702-60901721 | None:intergenic | 25.0% |
| !! | ATTGATGTAAGCAATTTTCT+TGG | - | chr1_2:60901770-60901789 | None:intergenic | 25.0% |
| ! | CTAAAGCCATTATATTGAAT+AGG | + | chr1_2:60901801-60901820 | Msa0082100:CDS | 25.0% |
| !!! | TTTCTTTAACTGTTTTGGAT+TGG | + | chr1_2:60901873-60901892 | Msa0082100:intron | 25.0% |
| !! | CATCTCTTTCAAATATTTTG+AGG | - | chr1_2:60901958-60901977 | None:intergenic | 25.0% |
| ! | CTCAAAATATTTGAAAGAGA+TGG | + | chr1_2:60901956-60901975 | Msa0082100:intron | 25.0% |
| ! | CATAGATAAATAGAAATTGC+TGG | + | chr1_2:60902277-60902296 | Msa0082100:intron | 25.0% |
| !! | AAAACTTCACTGGAAATTTT+TGG | + | chr1_2:60902597-60902616 | Msa0082100:intron | 25.0% |
| !! | AAACTTCACTGGAAATTTTT+GGG | + | chr1_2:60902598-60902617 | Msa0082100:intron | 25.0% |
| !! | GAGATCAAACATACAATTTT+AGG | + | chr1_2:60902842-60902861 | Msa0082100:intron | 25.0% |
| !!! | TAAACTATTTCTATCTTTGC+AGG | + | chr1_2:60902980-60902999 | Msa0082100:intron | 25.0% |
| !! | TTATATCATTAAGTTGCTTG+CGG | + | chr1_2:60903022-60903041 | Msa0082100:intron | 25.0% |
| ! | AATTAAACTTGTGCTTAAAC+TGG | - | chr1_2:60903171-60903190 | None:intergenic | 25.0% |
| ! | AAAAAGTTAATACTAGAAGC+CGG | + | chr1_2:60903227-60903246 | Msa0082100:CDS | 25.0% |
| !! | TAGAAGTTTCATTTGATGAT+AGG | - | chr1_2:60903292-60903311 | None:intergenic | 25.0% |
| GATAAGGAAGAAAGAAAGAA+AGG | + | chr1_2:60900550-60900569 | Msa0082100:five_prime_UTR | 30.0% | |
| AAAGAAAGGAAAAGAATGGA+AGG | + | chr1_2:60900564-60900583 | Msa0082100:exon | 30.0% | |
| GTGTAAAGAAAAACCTGTAT+TGG | - | chr1_2:60900755-60900774 | None:intergenic | 30.0% | |
| TTTAGATATTGACCCTGAAA+CGG | + | chr1_2:60900894-60900913 | Msa0082100:CDS | 30.0% | |
| !!! | GTGCTTACAAGTTTTTTACA+CGG | + | chr1_2:60901110-60901129 | Msa0082100:intron | 30.0% |
| CTTGATATGTTTCATAGGAA+GGG | - | chr1_2:60901250-60901269 | None:intergenic | 30.0% | |
| ACATCCTTGATATGTTTCAT+AGG | - | chr1_2:60901255-60901274 | None:intergenic | 30.0% | |
| TGATAAACAAAACTTGGGAT+TGG | - | chr1_2:60901319-60901338 | None:intergenic | 30.0% | |
| ! | TTTAAAACTACGAGAGACAA+TGG | + | chr1_2:60901471-60901490 | Msa0082100:intron | 30.0% |
| ACAAGGGTTACATTAGATAA+AGG | - | chr1_2:60901686-60901705 | None:intergenic | 30.0% | |
| CAGTTAAGTTCACAAAAACA+AGG | - | chr1_2:60901703-60901722 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTTGTGAACTTAAC+TGG | + | chr1_2:60901701-60901720 | Msa0082100:intron | 30.0% |
| !! | TATAATGGCTTTAGTTCTCT+CGG | - | chr1_2:60901795-60901814 | None:intergenic | 30.0% |
| CAGGGAAATATGAAATCTAT+TGG | - | chr1_2:60901853-60901872 | None:intergenic | 30.0% | |
| CCAAAACAGTTAAAGAAACA+GGG | - | chr1_2:60901871-60901890 | None:intergenic | 30.0% | |
| TCCAAAACAGTTAAAGAAAC+AGG | - | chr1_2:60901872-60901891 | None:intergenic | 30.0% | |
| ! | TTTGTGAAAACTTTTCCAGT+TGG | - | chr1_2:60902040-60902059 | None:intergenic | 30.0% |
| TTACAATCAATTGAAGTAGC+AGG | - | chr1_2:60902147-60902166 | None:intergenic | 30.0% | |
| ATGAAAAGAATTACTGTCGT+CGG | - | chr1_2:60902260-60902279 | None:intergenic | 30.0% | |
| !! | GTAATGTTTTTACCTTCTTC+TGG | + | chr1_2:60902421-60902440 | Msa0082100:intron | 30.0% |
| !! | GACACTAAATGTTTTAGACA+AGG | - | chr1_2:60902548-60902567 | None:intergenic | 30.0% |
| ! | TCTAAAACATTTAGTGTCAC+AGG | + | chr1_2:60902550-60902569 | Msa0082100:CDS | 30.0% |
| TTATGCTATTCATCTTAGCA+AGG | - | chr1_2:60902637-60902656 | None:intergenic | 30.0% | |
| TTAGTGATTCAAAGTAGTCA+GGG | - | chr1_2:60902813-60902832 | None:intergenic | 30.0% | |
| TGCAGGATTATCAATCAAAA+AGG | + | chr1_2:60902997-60903016 | Msa0082100:intron | 30.0% | |
| GCAGGATTATCAATCAAAAA+GGG | + | chr1_2:60902998-60903017 | Msa0082100:intron | 30.0% | |
| ! | TATATCATTAAGTTGCTTGC+GGG | + | chr1_2:60903023-60903042 | Msa0082100:intron | 30.0% |
| AAGATACAGTTTATACCTCA+AGG | + | chr1_2:60903056-60903075 | Msa0082100:intron | 30.0% | |
| AAAAGTTAATACTAGAAGCC+GGG | + | chr1_2:60903228-60903247 | Msa0082100:CDS | 30.0% | |
| CATCTTGCGCTATATTAAAT+TGG | + | chr1_2:60903422-60903441 | Msa0082100:exon | 30.0% | |
| CATTGTTAAGCAGTTAACAA+TGG | - | chr1_2:60903736-60903755 | None:intergenic | 30.0% | |
| TGTTAACTGCTTAACAATGA+AGG | + | chr1_2:60903737-60903756 | Msa0082100:three_prime_UTR | 30.0% | |
| !! | AGAAAAACCTGTATTGGTTG+AGG | - | chr1_2:60900749-60900768 | None:intergenic | 35.0% |
| ! | ATGCATTTCCTTCACCATTT+TGG | - | chr1_2:60900872-60900891 | None:intergenic | 35.0% |
| AAAATGGTGAAGGAAATGCA+TGG | + | chr1_2:60900871-60900890 | Msa0082100:CDS | 35.0% | |
| AAATAGCTACATCCGTTTCA+GGG | - | chr1_2:60900909-60900928 | None:intergenic | 35.0% | |
| !! | TATTTGTTGTGGTCAAACTG+AGG | + | chr1_2:60900924-60900943 | Msa0082100:intron | 35.0% |
| TTTCAAACAGCAATTGACCA+GGG | + | chr1_2:60901203-60901222 | Msa0082100:intron | 35.0% | |
| CCTTGATATGTTTCATAGGA+AGG | - | chr1_2:60901251-60901270 | None:intergenic | 35.0% | |
| CCTTCCTATGAAACATATCA+AGG | + | chr1_2:60901248-60901267 | Msa0082100:intron | 35.0% | |
| ATATCAAGGATGTGTTACCA+TGG | + | chr1_2:60901262-60901281 | Msa0082100:intron | 35.0% | |
| TAAACAAAACTTGGGATTGG+TGG | - | chr1_2:60901316-60901335 | None:intergenic | 35.0% | |
| AAGGAGAGAGTGATAGTTTA+TGG | - | chr1_2:60901403-60901422 | None:intergenic | 35.0% | |
| ! | CTCTCTCCTTATTTAGTCTA+TGG | + | chr1_2:60901413-60901432 | Msa0082100:intron | 35.0% |
| TAGTTTAGGGACCAAATTGA+CGG | + | chr1_2:60901522-60901541 | Msa0082100:intron | 35.0% | |
| ! | AAGCAATTTTCTTGGATCCA+AGG | - | chr1_2:60901762-60901781 | None:intergenic | 35.0% |
| !! | CCCTGTTTCTTTAACTGTTT+TGG | + | chr1_2:60901868-60901887 | Msa0082100:intron | 35.0% |
| ATACTTCATCTGTTATAGCC+AGG | - | chr1_2:60902108-60902127 | None:intergenic | 35.0% | |
| ! | CTGGAGCACATATATGTTTT+AGG | + | chr1_2:60902184-60902203 | Msa0082100:intron | 35.0% |
| ! | ACTGATTCATGCAAAAACTG+TGG | - | chr1_2:60902213-60902232 | None:intergenic | 35.0% |
| TGCATGAAACAAAACTTCAC+TGG | + | chr1_2:60902587-60902606 | Msa0082100:intron | 35.0% | |
| GAATAGCATAAACTCACTGT+TGG | + | chr1_2:60902646-60902665 | Msa0082100:intron | 35.0% | |
| !! | ACTGTTGGTCTGTATCTTTT+AGG | + | chr1_2:60902661-60902680 | Msa0082100:intron | 35.0% |
| !! | TTGGTCTGTATCTTTTAGGT+TGG | + | chr1_2:60902665-60902684 | Msa0082100:intron | 35.0% |
| !!! | TATCTTTTAGGTTGGAGGAT+AGG | + | chr1_2:60902673-60902692 | Msa0082100:intron | 35.0% |
| TAGTGATTCAAAGTAGTCAG+GGG | - | chr1_2:60902812-60902831 | None:intergenic | 35.0% | |
| CTTAGTGATTCAAAGTAGTC+AGG | - | chr1_2:60902814-60902833 | None:intergenic | 35.0% | |
| ACTAAGTTGTTTGTCCAATC+GGG | - | chr1_2:60902931-60902950 | None:intergenic | 35.0% | |
| CACTAAGTTGTTTGTCCAAT+CGG | - | chr1_2:60902932-60902951 | None:intergenic | 35.0% | |
| AATAAGAAGAAGGAACCTTG+AGG | - | chr1_2:60903074-60903093 | None:intergenic | 35.0% | |
| AAAGTTAATACTAGAAGCCG+GGG | + | chr1_2:60903229-60903248 | Msa0082100:CDS | 35.0% | |
| ! | AGAAAAACTGGGTAAGCTTT+TGG | + | chr1_2:60903388-60903407 | Msa0082100:CDS | 35.0% |
| !! | GTAGAAAGAATAATGGGTGA+CGG | + | chr1_2:60903444-60903463 | Msa0082100:three_prime_UTR | 35.0% |
| TGTATCCTCAATCTTCATAG+CGG | - | chr1_2:60903472-60903491 | None:intergenic | 35.0% | |
| ! | GTTTTCACATAGTCTTCTCT+TGG | - | chr1_2:60903543-60903562 | None:intergenic | 35.0% |
| ! | GTAACTAGCTAGCTTGTATT+TGG | + | chr1_2:60903565-60903584 | Msa0082100:three_prime_UTR | 35.0% |
| GCAATAATTATGTCCGATTG+TGG | + | chr1_2:60903622-60903641 | Msa0082100:three_prime_UTR | 35.0% | |
| ATCTCCTGTAAAACCACAAT+CGG | - | chr1_2:60903638-60903657 | None:intergenic | 35.0% | |
| GTGTAACAGGGATAGTGATA+AGG | + | chr1_2:60900534-60900553 | Msa0082100:five_prime_UTR | 40.0% | |
| AGGTGAGAGAGTTCTTGAAT+GGG | - | chr1_2:60900627-60900646 | None:intergenic | 40.0% | |
| AAGGTGAGAGAGTTCTTGAA+TGG | - | chr1_2:60900628-60900647 | None:intergenic | 40.0% | |
| TTGGTTGAGGTCGGAATTAA+TGG | - | chr1_2:60900736-60900755 | None:intergenic | 40.0% | |
| !! | AAACCTGTATTGGTTGAGGT+CGG | - | chr1_2:60900745-60900764 | None:intergenic | 40.0% |
| GCAAGGTATATGTGAACACT+TGG | + | chr1_2:60900846-60900865 | Msa0082100:CDS | 40.0% | |
| ATGTGAACACTTGGCCAAAA+TGG | + | chr1_2:60900855-60900874 | Msa0082100:CDS | 40.0% | |
| CAAATAGCTACATCCGTTTC+AGG | - | chr1_2:60900910-60900929 | None:intergenic | 40.0% | |
| ! | ACGGATGTAGCTATTTGTTG+TGG | + | chr1_2:60900913-60900932 | Msa0082100:intron | 40.0% |
| CTATGTAGTACCAACACTTC+AGG | - | chr1_2:60901148-60901167 | None:intergenic | 40.0% | |
| GTTTCAAACAGCAATTGACC+AGG | + | chr1_2:60901202-60901221 | Msa0082100:intron | 40.0% | |
| GCAACCGAGGACTAATTTAA+TGG | - | chr1_2:60901451-60901470 | None:intergenic | 40.0% | |
| !!! | TCGTAGTTTTAAAGCAACCG+AGG | - | chr1_2:60901464-60901483 | None:intergenic | 40.0% |
| GAGAGACAATGGTAGTTCAA+GGG | + | chr1_2:60901482-60901501 | Msa0082100:intron | 40.0% | |
| ! | ACTTTTCCAGTTGGATTGTG+AGG | - | chr1_2:60902031-60902050 | None:intergenic | 40.0% |
| CTGTTATAGCCAGGCAATTT+CGG | - | chr1_2:60902099-60902118 | None:intergenic | 40.0% | |
| TCTTGTGCACAAGCAAATTC+AGG | - | chr1_2:60902342-60902361 | None:intergenic | 40.0% | |
| AGGCAAGGGATATATGTTTC+TGG | - | chr1_2:60902486-60902505 | None:intergenic | 40.0% | |
| TTCTTGCATTCCTGGAAATG+AGG | - | chr1_2:60902506-60902525 | None:intergenic | 40.0% | |
| CATTTCCAGGAATGCAAGAA+CGG | + | chr1_2:60902506-60902525 | Msa0082100:CDS | 40.0% | |
| !!! | GTCTGTATCTTTTAGGTTGG+AGG | + | chr1_2:60902668-60902687 | Msa0082100:intron | 40.0% |
| !!! | TTTTAGGTTGGAGGATAGGA+TGG | + | chr1_2:60902677-60902696 | Msa0082100:intron | 40.0% |
| !! | TTTAGGTTGGAGGATAGGAT+GGG | + | chr1_2:60902678-60902697 | Msa0082100:intron | 40.0% |
| TCTGATAGCAGATGCAATAG+AGG | - | chr1_2:60902716-60902735 | None:intergenic | 40.0% | |
| !! | TTTTCAGGAAGCTGCTTTGA+CGG | + | chr1_2:60902774-60902793 | Msa0082100:CDS | 40.0% |
| AGTGATTCAAAGTAGTCAGG+GGG | - | chr1_2:60902811-60902830 | None:intergenic | 40.0% | |
| CTAAGTTGTTTGTCCAATCG+GGG | - | chr1_2:60902930-60902949 | None:intergenic | 40.0% | |
| AAGCTCGGCAAATAAGAAGA+AGG | - | chr1_2:60903084-60903103 | None:intergenic | 40.0% | |
| AGTGCACATACATCAGAAAG+GGG | - | chr1_2:60903119-60903138 | None:intergenic | 40.0% | |
| GAGTGCACATACATCAGAAA+GGG | - | chr1_2:60903120-60903139 | None:intergenic | 40.0% | |
| AGAGTGCACATACATCAGAA+AGG | - | chr1_2:60903121-60903140 | None:intergenic | 40.0% | |
| ACTACCAGAAGAGATACATC+AGG | + | chr1_2:60903324-60903343 | Msa0082100:CDS | 40.0% | |
| CAAACCTGATGTATCTCTTC+TGG | - | chr1_2:60903331-60903350 | None:intergenic | 40.0% | |
| ! | GTAAGCTTTTGGATTCCGAA+GGG | + | chr1_2:60903399-60903418 | Msa0082100:CDS | 40.0% |
| !! | ATGTCCGATTGTGGTTTTAC+AGG | + | chr1_2:60903631-60903650 | Msa0082100:three_prime_UTR | 40.0% |
| GTTGAGAAGCAGTACTAAGA+AGG | + | chr1_2:60903664-60903683 | Msa0082100:three_prime_UTR | 40.0% | |
| TAGCATTGCATCTCTGAGCA+AGG | - | chr1_2:60900647-60900666 | None:intergenic | 45.0% | |
| AATGCTATCAACCTCGCTGA+AGG | + | chr1_2:60900660-60900679 | Msa0082100:CDS | 45.0% | |
| ! | TTTTGATGTGGAGAGGAGCA+GGG | - | chr1_2:60900698-60900717 | None:intergenic | 45.0% |
| ! | TTTTTGATGTGGAGAGGAGC+AGG | - | chr1_2:60900699-60900718 | None:intergenic | 45.0% |
| ! | AAACGGCGGCATTTTTGATG+TGG | - | chr1_2:60900710-60900729 | None:intergenic | 45.0% |
| ! | GTCGGAATTAATGGCGGAAA+CGG | - | chr1_2:60900727-60900746 | None:intergenic | 45.0% |
| GTTGAGGTCGGAATTAATGG+CGG | - | chr1_2:60900733-60900752 | None:intergenic | 45.0% | |
| ATTCCGACCTCAACCAATAC+AGG | + | chr1_2:60900739-60900758 | Msa0082100:CDS | 45.0% | |
| TGTATTTCAAGGCACGTGCA+AGG | + | chr1_2:60900829-60900848 | Msa0082100:intron | 45.0% | |
| ACACTTGGCCAAAATGGTGA+AGG | + | chr1_2:60900861-60900880 | Msa0082100:CDS | 45.0% | |
| ACGTCTTCAACCTGAAGTGT+TGG | + | chr1_2:60901135-60901154 | Msa0082100:intron | 45.0% | |
| CGAGAGACAATGGTAGTTCA+AGG | + | chr1_2:60901481-60901500 | Msa0082100:intron | 45.0% | |
| AGGGTCATTGGATTGTACAC+AGG | - | chr1_2:60901603-60901622 | None:intergenic | 45.0% | |
| AAAGGGACAGCAAACATGCA+GGG | - | chr1_2:60901622-60901641 | None:intergenic | 45.0% | |
| AAAAGGGACAGCAAACATGC+AGG | - | chr1_2:60901623-60901642 | None:intergenic | 45.0% | |
| AACAGTCCTCACAATCCAAC+TGG | + | chr1_2:60902022-60902041 | Msa0082100:intron | 45.0% | |
| GACGAACTTGAGACTATTGC+CGG | + | chr1_2:60902061-60902080 | Msa0082100:CDS | 45.0% | |
| TTGTAAAGTGAGTGCCCTTG+AGG | + | chr1_2:60902161-60902180 | Msa0082100:intron | 45.0% | |
| TATATGTGCTCCAGCCTCAA+GGG | - | chr1_2:60902178-60902197 | None:intergenic | 45.0% | |
| ATATATGTGCTCCAGCCTCA+AGG | - | chr1_2:60902179-60902198 | None:intergenic | 45.0% | |
| TGCACAAAGAGTCCAGAAGA+AGG | - | chr1_2:60902436-60902455 | None:intergenic | 45.0% | |
| TTCTTCTGGACTCTTTGTGC+AGG | + | chr1_2:60902435-60902454 | Msa0082100:intron | 45.0% | |
| ATATCCCTTGCCTCATTTCC+AGG | + | chr1_2:60902493-60902512 | Msa0082100:CDS | 45.0% | |
| CATTCCTGGAAATGAGGCAA+GGG | - | chr1_2:60902500-60902519 | None:intergenic | 45.0% | |
| ATAGTCCGTTCTTGCATTCC+TGG | - | chr1_2:60902514-60902533 | None:intergenic | 45.0% | |
| ATAGCAGATGCAATAGAGGC+TGG | - | chr1_2:60902712-60902731 | None:intergenic | 45.0% | |
| GTCAAAGCAGCTTCCTGAAA+AGG | - | chr1_2:60902775-60902794 | None:intergenic | 45.0% | |
| GTGATTCAAAGTAGTCAGGG+GGG | - | chr1_2:60902810-60902829 | None:intergenic | 45.0% | |
| TACTTGTGTTAGACCCCGAT+TGG | + | chr1_2:60902914-60902933 | Msa0082100:intron | 45.0% | |
| ! | ATTAAGTTGCTTGCGGGAGT+GGG | + | chr1_2:60903029-60903048 | Msa0082100:intron | 45.0% |
| GTGTGAAAAAATCCCTGTCC+TGG | - | chr1_2:60903266-60903285 | None:intergenic | 45.0% | |
| GCTGCGGTTTCAGAAAAACT+GGG | + | chr1_2:60903377-60903396 | Msa0082100:CDS | 45.0% | |
| ! | GGTAAGCTTTTGGATTCCGA+AGG | + | chr1_2:60903398-60903417 | Msa0082100:CDS | 45.0% |
| ATATAGCGCAAGATGCCCTT+CGG | - | chr1_2:60903417-60903436 | None:intergenic | 45.0% | |
| ! | GCGGCATTTTTGATGTGGAG+AGG | - | chr1_2:60900705-60900724 | None:intergenic | 50.0% |
| ! | GGAATTAATGGCGGAAACGG+CGG | - | chr1_2:60900724-60900743 | None:intergenic | 50.0% |
| AGAGTATGACTTCGTCACCC+TGG | - | chr1_2:60901223-60901242 | None:intergenic | 50.0% | |
| CAAGGATGTGTTACCATGGC+TGG | + | chr1_2:60901266-60901285 | Msa0082100:intron | 50.0% | |
| TGGTGGCAATGCAAGCTTAC+AGG | - | chr1_2:60901299-60901318 | None:intergenic | 50.0% | |
| CAGCAAACATGCAGGGTCAT+TGG | - | chr1_2:60901615-60901634 | None:intergenic | 50.0% | |
| CTTGGATCCAAGGTCCACTT+AGG | - | chr1_2:60901752-60901771 | None:intergenic | 50.0% | |
| GCATTCCTGGAAATGAGGCA+AGG | - | chr1_2:60902501-60902520 | None:intergenic | 50.0% | |
| ! | TTCTGCTCCAGCTCCTTTTC+AGG | + | chr1_2:60902759-60902778 | Msa0082100:CDS | 50.0% |
| ! | CATTAAGTTGCTTGCGGGAG+TGG | + | chr1_2:60903028-60903047 | Msa0082100:intron | 50.0% |
| CTTATTTGCCGAGCTTCCTG+AGG | + | chr1_2:60903088-60903107 | Msa0082100:CDS | 50.0% | |
| TCAGAAAGGGGACAATCCTC+AGG | - | chr1_2:60903107-60903126 | None:intergenic | 50.0% | |
| GTTAATACTAGAAGCCGGGG+TGG | + | chr1_2:60903232-60903251 | Msa0082100:CDS | 50.0% | |
| CTGCAAGAGCGAGACAACTT+TGG | + | chr1_2:60903355-60903374 | Msa0082100:CDS | 50.0% | |
| GGCTGCGGTTTCAGAAAAAC+TGG | + | chr1_2:60903376-60903395 | Msa0082100:CDS | 50.0% | |
| GGATGTGTTACCATGGCTGG+TGG | + | chr1_2:60901269-60901288 | Msa0082100:intron | 55.0% | |
| TACAGGAACACCACCAGCCA+TGG | - | chr1_2:60901282-60901301 | None:intergenic | 55.0% | |
| GATCCAAGGTCCACTTAGGC+GGG | - | chr1_2:60901748-60901767 | None:intergenic | 55.0% | |
| GGATCCAAGGTCCACTTAGG+CGG | - | chr1_2:60901749-60901768 | None:intergenic | 55.0% | |
| ATTTCGGCTGCAGCATGCTC+CGG | - | chr1_2:60902083-60902102 | None:intergenic | 55.0% | |
| ATGCTGCAGCCGAAATTGCC+TGG | + | chr1_2:60902087-60902106 | Msa0082100:CDS | 55.0% | |
| AAAGTGAGTGCCCTTGAGGC+TGG | + | chr1_2:60902165-60902184 | Msa0082100:intron | 55.0% | |
| GCAGCTTCCTGAAAAGGAGC+TGG | - | chr1_2:60902769-60902788 | None:intergenic | 55.0% | |
| GGGACAATCCTCAGGAAGCT+CGG | - | chr1_2:60903099-60903118 | None:intergenic | 55.0% | |
| AATACTAGAAGCCGGGGTGG+TGG | + | chr1_2:60903235-60903254 | Msa0082100:CDS | 55.0% | |
| GAGCGAGACAACTTTGGCTG+CGG | + | chr1_2:60903361-60903380 | Msa0082100:CDS | 55.0% | |
| CGGAGCCGCTATGAAGATTG+AGG | + | chr1_2:60903464-60903483 | Msa0082100:three_prime_UTR | 55.0% | |
| AGTCAGGGAAGCCTTCAGCG+AGG | - | chr1_2:60900674-60900693 | None:intergenic | 60.0% | |
| GGAGAGGAGCAGGGAAGTCA+GGG | - | chr1_2:60900689-60900708 | None:intergenic | 60.0% | |
| TGGAGAGGAGCAGGGAAGTC+AGG | - | chr1_2:60900690-60900709 | None:intergenic | 60.0% | |
| GTCCACTTAGGCGGGTCAAG+CGG | - | chr1_2:60901740-60901759 | None:intergenic | 60.0% | |
| TGACCCGCCTAAGTGGACCT+TGG | + | chr1_2:60901742-60901761 | Msa0082100:CDS | 60.0% | |
| GTGGTGGCTGTTCCAGGACA+GGG | + | chr1_2:60903251-60903270 | Msa0082100:CDS | 60.0% | |
| ! | TGCCGCTTGACCCGCCTAAG+TGG | + | chr1_2:60901735-60901754 | Msa0082100:CDS | 65.0% |
| TCCTGGAACAGCCACCACCC+CGG | - | chr1_2:60903249-60903268 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCTGTTCCAGGAC+AGG | + | chr1_2:60903250-60903269 | Msa0082100:CDS | 65.0% |
| ! | GCCGGGGTGGTGGCTGTTCC+AGG | + | chr1_2:60903245-60903264 | Msa0082100:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 60900525 | 60903780 | 60900525 | ID=Msa0082100;Name=Msa0082100 |
| chr1_2 | mRNA | 60900525 | 60903780 | 60900525 | ID=Msa0082100-mRNA-1;Parent=Msa0082100;Name=Msa0082100-mRNA-1;_AED=0.35;_eAED=0.35;_QI=54|0.71|0.75|1|0.57|0.62|8|341|336 |
| chr1_2 | exon | 60900525 | 60900760 | 60900525 | ID=Msa0082100-mRNA-1:exon:19979;Parent=Msa0082100-mRNA-1 |
| chr1_2 | exon | 60900840 | 60900918 | 60900840 | ID=Msa0082100-mRNA-1:exon:19980;Parent=Msa0082100-mRNA-1 |
| chr1_2 | exon | 60901728 | 60901822 | 60901728 | ID=Msa0082100-mRNA-1:exon:19981;Parent=Msa0082100-mRNA-1 |
| chr1_2 | exon | 60902027 | 60902123 | 60902027 | ID=Msa0082100-mRNA-1:exon:19982;Parent=Msa0082100-mRNA-1 |
| chr1_2 | exon | 60902457 | 60902571 | 60902457 | ID=Msa0082100-mRNA-1:exon:19983;Parent=Msa0082100-mRNA-1 |
| chr1_2 | exon | 60902683 | 60902837 | 60902683 | ID=Msa0082100-mRNA-1:exon:19984;Parent=Msa0082100-mRNA-1 |
| chr1_2 | exon | 60903065 | 60903127 | 60903065 | ID=Msa0082100-mRNA-1:exon:19985;Parent=Msa0082100-mRNA-1 |
| chr1_2 | exon | 60903215 | 60903780 | 60903215 | ID=Msa0082100-mRNA-1:exon:19986;Parent=Msa0082100-mRNA-1 |
| chr1_2 | five_prime_UTR | 60900525 | 60900578 | 60900525 | ID=Msa0082100-mRNA-1:five_prime_utr;Parent=Msa0082100-mRNA-1 |
| chr1_2 | CDS | 60900579 | 60900760 | 60900579 | ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1 |
| chr1_2 | CDS | 60900840 | 60900918 | 60900840 | ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1 |
| chr1_2 | CDS | 60901728 | 60901822 | 60901728 | ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1 |
| chr1_2 | CDS | 60902027 | 60902123 | 60902027 | ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1 |
| chr1_2 | CDS | 60902457 | 60902571 | 60902457 | ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1 |
| chr1_2 | CDS | 60902683 | 60902837 | 60902683 | ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1 |
| chr1_2 | CDS | 60903065 | 60903127 | 60903065 | ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1 |
| chr1_2 | CDS | 60903215 | 60903439 | 60903215 | ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1 |
| chr1_2 | three_prime_UTR | 60903440 | 60903780 | 60903440 | ID=Msa0082100-mRNA-1:three_prime_utr;Parent=Msa0082100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
