AlfalfaGEDB | Msa0082100

M. sativa cultivar zhongmu-4 / Msa0082100

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006558 GO:0006559 GO:0006568 GO:0006569 GO:0006575 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016053 GO:0016054 GO:0016212 GO:0016740 GO:0016769 GO:0016829 GO:0016846 GO:0017144 GO:0019439 GO:0019752 GO:0031974 GO:0031981 GO:0034641 GO:0036137 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0042737 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046218 GO:0046394 GO:0046395 GO:0046483 GO:0046700 GO:0046983 GO:0047312 GO:0047804 GO:0047945 GO:0070013 GO:0070189 GO:0070546 GO:0070548 GO:0071704 GO:0097052 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902221 GO:1902222
PFAM: PF00155.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0082100	XP_003591459.2	80.893	403	10	2	1	336	1	403	0.0	645

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0082100	sp\|Q16773\|KAT1_HUMAN	30.969	423	177	10	6	325	7	417	3.20e-53	183

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0082100	G7IEH9	80.893	403	10	2	1	336	1	403	0.0	645

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024070	Msa0082100	0.815146	1.073728e-51	-8.615850e-47
Msa0030640	Msa0082100	0.834492	2.905899e-56	-8.615850e-47
Msa0047400	Msa0082100	0.821136	4.740219e-53	-8.615850e-47
Msa0075080	Msa0082100	0.814070	1.858190e-51	-8.615850e-47
Msa0082100	Msa0102290	0.804662	1.939509e-49	-8.615850e-47
Msa0082100	Msa0122930	0.811419	7.068196e-51	-8.615850e-47
Msa0082100	Msa0128490	0.819455	1.150980e-52	-8.615850e-47
Msa0082100	Msa0147070	0.825262	5.159054e-54	-8.615850e-47
Msa0082100	Msa0170550	0.808603	2.855687e-50	-8.615850e-47
Msa0082100	Msa0174510	0.851390	9.157406e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0082100	MtrunA17_Chr1g0195061	80.893	403	10	2	1	336	1	403	0.0	645
Msa0082100	MtrunA17_Chr3g0114811	33.079	393	182	6	4	327	63	443	3.35e-65	212
Msa0082100	MtrunA17_Chr3g0114831	31.298	393	189	6	4	327	426	806	1.94e-58	201
Msa0082100	MtrunA17_Chr3g0114831	27.928	333	169	6	4	279	10	328	7.96e-34	132
Msa0082100	MtrunA17_Chr8g0382671	28.871	381	172	11	30	327	102	466	4.09e-29	116
Msa0082100	MtrunA17_Chr7g0267911	33.083	266	128	7	96	327	215	464	7.26e-28	113
Msa0082100	MtrunA17_Chr8g0360241	27.826	230	123	9	89	280	155	379	8.14e-14	72.0
Msa0082100	MtrunA17_Chr2g0324801	25.571	219	127	8	96	280	131	347	4.12e-12	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0082100	AT1G77670.1	33.333	393	181	6	4	327	56	436	7.03e-68	219
Msa0082100	AT2G22250.1	27.202	386	174	10	30	328	55	420	2.67e-30	119
Msa0082100	AT2G22250.3	27.202	386	174	10	30	328	102	467	4.18e-30	119
Msa0082100	AT2G22250.2	27.202	386	174	10	30	328	102	467	4.18e-30	119
Msa0082100	AT5G36160.1	26.667	240	131	9	76	281	154	382	2.09e-17	83.2
Msa0082100	AT2G24850.1	25.581	258	140	11	76	293	162	407	5.66e-16	79.0
Msa0082100	AT4G28410.2	26.364	220	128	7	97	283	192	410	4.04e-15	76.3
Msa0082100	AT4G28410.1	26.606	218	126	7	97	281	192	408	4.55e-15	76.3
Msa0082100	AT4G23590.1	23.311	296	176	10	60	320	136	415	6.31e-15	75.9
Msa0082100	AT2G20610.2	22.490	249	146	7	76	289	178	414	7.63e-12	66.2

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Find 97 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTAATACTAGAAGCC+GGG	0.486367	1_2:+60903228	Msa0082100:CDS
AAAATGGTGAAGGAAATGCA+TGG	0.709380	1_2:+60900871	Msa0082100:CDS
AAACCTGTATTGGTTGAGGT+CGG	0.632186	1_2:-60900742	None:intergenic
AAAGAAAGAAAGGAAAAGAA+TGG	0.401522	1_2:+60900560	Msa0082100:exon
AAAGAAAGGAAAAGAATGGA+AGG	0.476330	1_2:+60900564	Msa0082100:exon
AAAGTTAATACTAGAAGCCG+GGG	0.622158	1_2:+60903229	Msa0082100:CDS
AAATAGCTACATCCGTTTCA+GGG	0.548601	1_2:-60900906	None:intergenic
AAATTGGTAGAAAGAATAAT+GGG	0.483839	1_2:+60903438	Msa0082100:exon
AACAGTCCTCACAATCCAAC+TGG	0.421799	1_2:+60902022	Msa0082100:intron
AAGATACAGTTTATACCTCA+AGG	0.523616	1_2:+60903056	Msa0082100:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAAGGAAGAAAGAAAGAA+AGG	+	chr1_2:60900550-60900569	Msa0082100:five_prime_UTR	30.0%
AAAGAAAGGAAAAGAATGGA+AGG	+	chr1_2:60900564-60900583	Msa0082100:exon	30.0%
GTGTAAAGAAAAACCTGTAT+TGG	-	chr1_2:60900755-60900774	None:intergenic	30.0%
TTTAGATATTGACCCTGAAA+CGG	+	chr1_2:60900894-60900913	Msa0082100:CDS	30.0%
CTTGATATGTTTCATAGGAA+GGG	-	chr1_2:60901250-60901269	None:intergenic	30.0%
ACATCCTTGATATGTTTCAT+AGG	-	chr1_2:60901255-60901274	None:intergenic	30.0%
TGATAAACAAAACTTGGGAT+TGG	-	chr1_2:60901319-60901338	None:intergenic	30.0%
ACAAGGGTTACATTAGATAA+AGG	-	chr1_2:60901686-60901705	None:intergenic	30.0%
CAGTTAAGTTCACAAAAACA+AGG	-	chr1_2:60901703-60901722	None:intergenic	30.0%
CAGGGAAATATGAAATCTAT+TGG	-	chr1_2:60901853-60901872	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	60900525	60903780	60900525	ID=Msa0082100;Name=Msa0082100
chr1_2	mRNA	60900525	60903780	60900525	ID=Msa0082100-mRNA-1;Parent=Msa0082100;Name=Msa0082100-mRNA-1;_AED=0.35;_eAED=0.35;_QI=54\|0.71\|0.75\|1\|0.57\|0.62\|8\|341\|336
chr1_2	exon	60900525	60900760	60900525	ID=Msa0082100-mRNA-1:exon:19979;Parent=Msa0082100-mRNA-1
chr1_2	exon	60900840	60900918	60900840	ID=Msa0082100-mRNA-1:exon:19980;Parent=Msa0082100-mRNA-1
chr1_2	exon	60901728	60901822	60901728	ID=Msa0082100-mRNA-1:exon:19981;Parent=Msa0082100-mRNA-1
chr1_2	exon	60902027	60902123	60902027	ID=Msa0082100-mRNA-1:exon:19982;Parent=Msa0082100-mRNA-1
chr1_2	exon	60902457	60902571	60902457	ID=Msa0082100-mRNA-1:exon:19983;Parent=Msa0082100-mRNA-1
chr1_2	exon	60902683	60902837	60902683	ID=Msa0082100-mRNA-1:exon:19984;Parent=Msa0082100-mRNA-1
chr1_2	exon	60903065	60903127	60903065	ID=Msa0082100-mRNA-1:exon:19985;Parent=Msa0082100-mRNA-1
chr1_2	exon	60903215	60903780	60903215	ID=Msa0082100-mRNA-1:exon:19986;Parent=Msa0082100-mRNA-1
chr1_2	five_prime_UTR	60900525	60900578	60900525	ID=Msa0082100-mRNA-1:five_prime_utr;Parent=Msa0082100-mRNA-1
chr1_2	CDS	60900579	60900760	60900579	ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1
chr1_2	CDS	60900840	60900918	60900840	ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1
chr1_2	CDS	60901728	60901822	60901728	ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1
chr1_2	CDS	60902027	60902123	60902027	ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1
chr1_2	CDS	60902457	60902571	60902457	ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1
chr1_2	CDS	60902683	60902837	60902683	ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1
chr1_2	CDS	60903065	60903127	60903065	ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1
chr1_2	CDS	60903215	60903439	60903215	ID=Msa0082100-mRNA-1:cds;Parent=Msa0082100-mRNA-1
chr1_2	three_prime_UTR	60903440	60903780	60903440	ID=Msa0082100-mRNA-1:three_prime_utr;Parent=Msa0082100-mRNA-1

Gene Sequence

>Msa0082100

ATGGAAGGAAAATTGTCGCGTGCAGCACAGAAGCTAACATCATCACCCATTCAAGAACTCTCTCACCTTGCTCAGAGATGCAATGCTATCAACCTCGCTGAAGGCTTCCCTGACTTCCCTGCTCCTCTCCACATCAAAAATGCCGCCGTTTCCGCCATTAATTCCGACCTCAACCAATACAGGCACGTGCAAGGTATATGTGAACACTTGGCCAAAATGGTGAAGGAAATGCATGGTTTAGATATTGACCCTGAAACGGATATACATGTGCCGCTTGACCCGCCTAAGTGGACCTTGGATCCAAGAAAATTGCTTACATCAATTACCGAGAGAACTAAAGCCATTATATTGAATAGTCCTCACAATCCAACTGGAAAAGTTTTCACAAAAGACGAACTTGAGACTATTGCCGGAGCATGCTGCAGCCGAAATTGCCTGGCTATAACAGATGAAGTTTATGAGCATATAACTTATGACAACCAGAAACATATATCCCTTGCCTCATTTCCAGGAATGCAAGAACGGACTATTATAACATCTTCCTTGTCTAAAACATTTAGTGTCACAGGTTGGAGGATAGGATGGGCAATTGCACCAGCCTCTATTGCATCTGCTATCAGAAACATTCATATAATAGTCACAGATTCTGCTCCAGCTCCTTTTCAGGAAGCTGCTTTGACGGCTTTGAGAAGCCCCCCTGACTACTTTGAATCACTAAGAAGATTTATACCTCAAGGTTCCTTCTTCTTATTTGCCGAGCTTCCTGAGGATTGTCCCCTTTCTGATATAGAATTTGTTAAAAAGTTAATACTAGAAGCCGGGGTGGTGGCTGTTCCAGGACAGGGATTTTTTCACACAAGCCTATCATCAAATGAAACTTCTAGTGCAAGTTGTAACTACCAGAAGAGATACATCAGGTTTGCATTCTGCAAGAGCGAGACAACTTTGGCTGCGGTTTCAGAAAAACTGGGTAAGCTTTTGGATTCCGAAGGGCATCTTGCGCTATATTAA

Protein sequence

>Msa0082100

MEGKLSRAAQKLTSSPIQELSHLAQRCNAINLAEGFPDFPAPLHIKNAAVSAINSDLNQYRHVQGICEHLAKMVKEMHGLDIDPETDIHVPLDPPKWTLDPRKLLTSITERTKAIILNSPHNPTGKVFTKDELETIAGACCSRNCLAITDEVYEHITYDNQKHISLASFPGMQERTIITSSLSKTFSVTGWRIGWAIAPASIASAIRNIHIIVTDSAPAPFQEAALTALRSPPDYFESLRRFIPQGSFFLFAELPEDCPLSDIEFVKKLILEAGVVAVPGQGFFHTSLSSNETSSASCNYQKRYIRFAFCKSETTLAAVSEKLGKLLDSEGHLALY*