Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147920 | MCH82926.1 | 88.294 | 299 | 35 | 0 | 1 | 299 | 1 | 299 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147920 | sp|B9FSC8|OPR11_ORYSJ | 63.973 | 297 | 105 | 2 | 1 | 297 | 69 | 363 | 6.28e-142 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147920 | A0A392M6C6 | 88.294 | 299 | 35 | 0 | 1 | 299 | 1 | 299 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092990 | Msa0147920 | 0.802808 | 4.705231e-49 | -8.615850e-47 |
| Msa0147920 | Msa0191910 | 0.842876 | 1.977728e-58 | -8.615850e-47 |
| Msa0147920 | Msa0234020 | 0.825169 | 5.426756e-54 | -8.615850e-47 |
| Msa0147920 | Msa0269450 | 0.816742 | 4.726588e-52 | -8.615850e-47 |
| Msa0147920 | Msa0309550 | 0.808583 | 2.884467e-50 | -8.615850e-47 |
| Msa0147920 | Msa0379640 | 0.801816 | 7.531418e-49 | -8.615850e-47 |
| Msa0147920 | Msa0389810 | 0.823993 | 1.026822e-53 | -8.615850e-47 |
| Msa0147920 | Msa0465680 | -0.800097 | 1.691027e-48 | -8.615850e-47 |
| Msa0147920 | Msa0468130 | 0.808744 | 2.665018e-50 | -8.615850e-47 |
| Msa0147920 | Msa0484780 | 0.804045 | 2.608489e-49 | -8.615850e-47 |
| Msa0147920 | Msa0527250 | 0.870758 | 1.145374e-66 | -8.615850e-47 |
| Msa0147920 | Msa0543900 | 0.808408 | 3.143021e-50 | -8.615850e-47 |
| Msa0147920 | Msa0553460 | 0.810951 | 8.927140e-51 | -8.615850e-47 |
| Msa0147920 | Msa0599580 | 0.806082 | 9.778615e-50 | -8.615850e-47 |
| Msa0147920 | Msa0599770 | 0.814888 | 1.224503e-51 | -8.615850e-47 |
| Msa0147920 | Msa0615310 | 0.806490 | 8.021005e-50 | -8.615850e-47 |
| Msa0147920 | Msa0647830 | 0.807211 | 5.646526e-50 | -8.615850e-47 |
| Msa0147920 | Msa0662650 | 0.823003 | 1.750435e-53 | -8.615850e-47 |
| Msa0147920 | Msa0678820 | 0.814783 | 1.292045e-51 | -8.615850e-47 |
| Msa0147920 | Msa0690440 | 0.815203 | 1.042609e-51 | -8.615850e-47 |
| Msa0147920 | Msa0708860 | 0.825682 | 4.102101e-54 | -8.615850e-47 |
| Msa0147920 | Msa0731180 | 0.818586 | 1.814690e-52 | -8.615850e-47 |
| Msa0147920 | Msa0771720 | 0.803918 | 2.771535e-49 | -8.615850e-47 |
| Msa0147920 | Msa0927670 | 0.800232 | 1.587298e-48 | -8.615850e-47 |
| Msa0147920 | Msa0965750 | 0.804200 | 2.421573e-49 | -8.615850e-47 |
| Msa0147920 | Msa0982270 | 0.820224 | 7.679773e-53 | -8.615850e-47 |
| Msa0147920 | Msa1002480 | 0.816955 | 4.235239e-52 | -8.615850e-47 |
| Msa0147920 | Msa1039880 | 0.803534 | 3.329689e-49 | -8.615850e-47 |
| Msa0147920 | Msa1054410 | 0.802025 | 6.823484e-49 | -8.615850e-47 |
| Msa0147920 | Msa1217810 | 0.814846 | 1.251576e-51 | -8.615850e-47 |
| Msa0147920 | Msa1233500 | 0.845356 | 4.275151e-59 | -8.615850e-47 |
| Msa0147920 | Msa1233890 | 0.803068 | 4.158981e-49 | -8.615850e-47 |
| Msa0147920 | Msa1275770 | 0.804004 | 2.660131e-49 | -8.615850e-47 |
| Msa0147920 | Msa1279210 | 0.802030 | 6.806549e-49 | -8.615850e-47 |
| Msa0147920 | Msa1307740 | 0.814064 | 1.863263e-51 | -8.615850e-47 |
| Msa0147920 | Msa1343320 | 0.800883 | 1.169499e-48 | -8.615850e-47 |
| Msa0147920 | Msa1371580 | 0.870471 | 1.423617e-66 | -8.615850e-47 |
| Msa0147920 | Msa1379710 | 0.870187 | 1.763112e-66 | -8.615850e-47 |
| Msa0147920 | Msa1382930 | 0.806665 | 7.365660e-50 | -8.615850e-47 |
| Msa0147920 | Msa1401290 | 0.850269 | 1.893841e-60 | -8.615850e-47 |
| Msa0147920 | Msa1438910 | 0.804544 | 2.052643e-49 | -8.615850e-47 |
| Msa0147920 | Msa1444740 | 0.802156 | 6.412351e-49 | -8.615850e-47 |
| Msa0147920 | Msa1462840 | 0.845740 | 3.363689e-59 | -8.615850e-47 |
| Msa0147920 | Msa1466730 | 0.803498 | 3.387317e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147920 | MtrunA17_Chr3g0144001 | 74.582 | 299 | 70 | 3 | 1 | 299 | 72 | 364 | 3.74e-167 | 468 |
| Msa0147920 | MtrunA17_Chr5g0394891 | 65.772 | 298 | 100 | 2 | 1 | 298 | 74 | 369 | 5.37e-147 | 417 |
| Msa0147920 | MtrunA17_Chr5g0394841 | 63.758 | 298 | 106 | 2 | 1 | 298 | 76 | 371 | 6.69e-142 | 404 |
| Msa0147920 | MtrunA17_Chr5g0394861 | 65.101 | 298 | 102 | 2 | 1 | 298 | 76 | 371 | 7.31e-142 | 404 |
| Msa0147920 | MtrunA17_Chr5g0394771 | 65.101 | 298 | 96 | 4 | 1 | 298 | 102 | 391 | 1.82e-141 | 404 |
| Msa0147920 | MtrunA17_Chr5g0394751 | 63.087 | 298 | 102 | 4 | 1 | 298 | 70 | 359 | 7.79e-137 | 391 |
| Msa0147920 | MtrunA17_Chr5g0394811 | 62.752 | 298 | 109 | 2 | 1 | 298 | 183 | 478 | 5.51e-136 | 393 |
| Msa0147920 | MtrunA17_Chr5g0394811 | 82.927 | 41 | 7 | 0 | 1 | 41 | 57 | 97 | 3.92e-18 | 84.3 |
| Msa0147920 | MtrunA17_Chr5g0395841 | 60.943 | 297 | 114 | 2 | 1 | 297 | 76 | 370 | 5.50e-134 | 384 |
| Msa0147920 | MtrunA17_Chr4g0070561 | 51.133 | 309 | 138 | 4 | 1 | 297 | 81 | 388 | 2.78e-108 | 320 |
| Msa0147920 | MtrunA17_Chr5g0394801 | 52.128 | 188 | 61 | 2 | 103 | 290 | 27 | 185 | 8.06e-60 | 191 |
| Msa0147920 | MtrunA17_Chr5g0394791 | 58.416 | 101 | 36 | 1 | 3 | 103 | 75 | 169 | 2.25e-33 | 121 |
| Msa0147920 | MtrunA17_Chr3g0130471 | 58.182 | 55 | 20 | 1 | 121 | 175 | 1 | 52 | 1.48e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0147920 | AT1G76690.1 | 63.245 | 302 | 105 | 3 | 1 | 300 | 76 | 373 | 8.35e-141 | 402 |
| Msa0147920 | AT1G76680.1 | 63.333 | 300 | 108 | 2 | 1 | 300 | 74 | 371 | 1.85e-140 | 401 |
| Msa0147920 | AT1G76680.2 | 58.462 | 325 | 108 | 3 | 1 | 300 | 74 | 396 | 1.01e-134 | 387 |
| Msa0147920 | AT1G09400.1 | 65.201 | 273 | 84 | 3 | 1 | 271 | 57 | 320 | 3.04e-130 | 373 |
| Msa0147920 | AT1G09400.2 | 65.428 | 269 | 82 | 3 | 5 | 271 | 2 | 261 | 3.38e-129 | 368 |
| Msa0147920 | AT2G06050.2 | 47.452 | 314 | 146 | 5 | 1 | 297 | 74 | 385 | 6.05e-101 | 301 |
| Msa0147920 | AT2G06050.1 | 47.452 | 314 | 146 | 5 | 1 | 297 | 74 | 385 | 6.05e-101 | 301 |
| Msa0147920 | AT2G06050.3 | 47.452 | 314 | 146 | 5 | 1 | 297 | 74 | 385 | 6.05e-101 | 301 |
| Msa0147920 | AT1G17990.2 | 58.373 | 209 | 74 | 4 | 1 | 208 | 63 | 259 | 2.24e-86 | 259 |
| Msa0147920 | AT1G17990.1 | 58.373 | 209 | 74 | 4 | 1 | 208 | 71 | 267 | 2.97e-86 | 259 |
| Msa0147920 | AT1G18020.1 | 58.373 | 209 | 74 | 4 | 1 | 208 | 71 | 267 | 2.97e-86 | 259 |
Find 83 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAAATACCAGGCGTATT+TGG | 0.126815 | 1_4:+8036480 | None:intergenic |
| ACCCAAATACGCCTGGTATT+TGG | 0.232167 | 1_4:-8036482 | Msa0147920:CDS |
| ATACACACAAGTACCATATT+TGG | 0.257829 | 1_4:+8036362 | None:intergenic |
| CCTTTGAACACCTTCCTAAT+AGG | 0.290006 | 1_4:+8035744 | None:intergenic |
| GCTGCTGATCTAGTGGCTTA+TGG | 0.307172 | 1_4:-8035660 | Msa0147920:CDS |
| GGCTGAATCATTGAATCAAT+TGG | 0.309770 | 1_4:-8035847 | Msa0147920:CDS |
| TCCAAATACCAGGCGTATTT+GGG | 0.322139 | 1_4:+8036481 | None:intergenic |
| AAAGGGACATTTATTGTTGC+TGG | 0.324243 | 1_4:-8035726 | Msa0147920:CDS |
| GACAGGATCATGCGTATAAA+AGG | 0.327954 | 1_4:+8035557 | None:intergenic |
| GGATTTCATTTGTGCTTAAT+CGG | 0.331257 | 1_4:+8036165 | None:intergenic |
| GGCTTGTTTGTGCATGATAT+TGG | 0.338072 | 1_4:+8036245 | None:intergenic |
| GTGCGCCAAGTTCATGAAAA+AGG | 0.339105 | 1_4:-8036426 | Msa0147920:CDS |
| AATGGTCCTTGACACCTATT+AGG | 0.360511 | 1_4:-8035758 | Msa0147920:CDS |
| ACCATATTTGGATACTCTTC+CGG | 0.374593 | 1_4:+8036374 | None:intergenic |
| GACTCTGATCCTCAAGTATT+GGG | 0.377448 | 1_4:-8035879 | Msa0147920:CDS |
| TTGTTGCTGGAGGTTATGAT+AGG | 0.394121 | 1_4:-8035713 | Msa0147920:CDS |
| ATTAGCTGCAGCAGGATCAT+TGG | 0.397402 | 1_4:+8036205 | None:intergenic |
| TTAAATTGTGTAACCATCCT+TGG | 0.400376 | 1_4:+8035798 | None:intergenic |
| TCATGAACTTGGCGCACAAT+TGG | 0.406981 | 1_4:+8036432 | None:intergenic |
| GATATTGGAGGTTTACCTTC+AGG | 0.416474 | 1_4:+8036260 | None:intergenic |
| GTATAAAAGGTAGTTGGATC+AGG | 0.427027 | 1_4:+8035570 | None:intergenic |
| CTTGCTTGATCAATTTCTAA+AGG | 0.427817 | 1_4:-8036054 | Msa0147920:CDS |
| AACGACAGAGATGACGAGTA+TGG | 0.432506 | 1_4:-8036023 | Msa0147920:CDS |
| GCCGGAAGAGTATCCAAATA+TGG | 0.433682 | 1_4:-8036375 | Msa0147920:intron |
| TTGAAGTCATTGACAAGCAT+GGG | 0.444760 | 1_4:+8036143 | None:intergenic |
| TATACGCATGATCCTGTCCT+TGG | 0.445992 | 1_4:-8035552 | Msa0147920:CDS |
| TGGTATTTGGACAAGGGAAC+AGG | 0.457024 | 1_4:-8036469 | Msa0147920:CDS |
| AATAGGTGTCAAGGACCATT+TGG | 0.462349 | 1_4:+8035761 | None:intergenic |
| GCTGAATCATTGAATCAATT+GGG | 0.474970 | 1_4:-8035846 | Msa0147920:CDS |
| GCAAGAAATGCCATGGAAGC+AGG | 0.479264 | 1_4:-8036113 | Msa0147920:CDS |
| GTAGAGATACATGGAGCTAA+TGG | 0.479754 | 1_4:-8036080 | Msa0147920:CDS |
| GTGCTTAATCGGCGAGGAGG+TGG | 0.494140 | 1_4:+8036176 | None:intergenic |
| TTGGACAAGGGAACAGGTAG+AGG | 0.495054 | 1_4:-8036463 | Msa0147920:CDS |
| TATGATAGGAGTGAAGGAAA+TGG | 0.503378 | 1_4:-8035699 | Msa0147920:CDS |
| AGACTCTGATCCTCAAGTAT+TGG | 0.505390 | 1_4:-8035880 | Msa0147920:CDS |
| TCCATCAAAACCTGCTTCCA+TGG | 0.506298 | 1_4:+8036103 | None:intergenic |
| CTTCCCACTTCGAGTGGTGA+AGG | 0.507220 | 1_4:-8035976 | Msa0147920:CDS |
| TCAAGTATTGGGTATTTACA+TGG | 0.517434 | 1_4:-8035868 | Msa0147920:CDS |
| GGATATTGATTAGCTGCAGC+AGG | 0.526559 | 1_4:+8036197 | None:intergenic |
| TTTGAAGTCATTGACAAGCA+TGG | 0.526685 | 1_4:+8036142 | None:intergenic |
| CCTATTAGGAAGGTGTTCAA+AGG | 0.527728 | 1_4:-8035744 | Msa0147920:CDS |
| TTGGAGGTTTACCTTCAGGC+TGG | 0.534090 | 1_4:+8036264 | None:intergenic |
| TTGGAGATATCTTTCTGAAG+AGG | 0.538385 | 1_4:+8036224 | None:intergenic |
| TTGTTTGTGCATGATATTGG+AGG | 0.543879 | 1_4:+8036248 | None:intergenic |
| AAAAGGTACCCAAATACGCC+TGG | 0.544881 | 1_4:-8036489 | None:intergenic |
| CTATTAGGAAGGTGTTCAAA+GGG | 0.550825 | 1_4:-8035743 | Msa0147920:CDS |
| TCATGCGTATAAAAGGTAGT+TGG | 0.551693 | 1_4:+8035564 | None:intergenic |
| TTTGATGGAGTAGAGATACA+TGG | 0.555461 | 1_4:-8036089 | Msa0147920:CDS |
| TTCTGTCAACTTTGGCACGC+CGG | 0.558422 | 1_4:-8036393 | Msa0147920:CDS |
| CACCTTCCTAATAGGTGTCA+AGG | 0.558964 | 1_4:+8035752 | None:intergenic |
| ATGTGGTGCTGCTGATCTAG+TGG | 0.559206 | 1_4:-8035667 | Msa0147920:CDS |
| ACAAGTGTGACACCACCAAA+TGG | 0.560123 | 1_4:-8035776 | Msa0147920:CDS |
| TGTTCCCTTGTCCAAATACC+AGG | 0.563761 | 1_4:+8036471 | None:intergenic |
| TTGTTGCTTCCCACTTCGAG+TGG | 0.583591 | 1_4:-8035982 | Msa0147920:CDS |
| ATGGATAATCACTATATCCA+AGG | 0.584629 | 1_4:+8035535 | None:intergenic |
| TAATCACTATATCCAAGGAC+AGG | 0.584850 | 1_4:+8035540 | None:intergenic |
| AATTGCTGCAAGAAATGCCA+TGG | 0.589036 | 1_4:-8036120 | Msa0147920:CDS |
| GGAGGTTATGATAGGAGTGA+AGG | 0.591271 | 1_4:-8035705 | Msa0147920:CDS |
| ACTGCCTTCACCACTCGAAG+TGG | 0.598555 | 1_4:+8035972 | None:intergenic |
| GGGACATTTATTGTTGCTGG+AGG | 0.600926 | 1_4:-8035723 | Msa0147920:CDS |
| AAGGCAGTAGCTGATGAGAT+CGG | 0.601265 | 1_4:-8035957 | Msa0147920:CDS |
| AGGTGTCAAGGACCATTTGG+TGG | 0.602094 | 1_4:+8035764 | None:intergenic |
| ATACGCCTGGTATTTGGACA+AGG | 0.612701 | 1_4:-8036476 | Msa0147920:CDS |
| GTCCTTGACACCTATTAGGA+AGG | 0.614034 | 1_4:-8035754 | Msa0147920:CDS |
| TGATGAGATCGGAGCTGACA+AGG | 0.615859 | 1_4:-8035946 | Msa0147920:CDS |
| TATAAAAGGTAGTTGGATCA+GGG | 0.616334 | 1_4:+8035571 | None:intergenic |
| CAAGGGAACAGGTAGAGGCA+TGG | 0.618836 | 1_4:-8036458 | Msa0147920:CDS |
| TCATATGATTGAGCCAAGGA+TGG | 0.619695 | 1_4:-8035811 | Msa0147920:CDS |
| TGAAGTCATTGACAAGCATG+GGG | 0.623915 | 1_4:+8036144 | None:intergenic |
| ATGTAAATACCCAATACTTG+AGG | 0.640485 | 1_4:+8035870 | None:intergenic |
| TTTGTGCTTAATCGGCGAGG+AGG | 0.648362 | 1_4:+8036173 | None:intergenic |
| AAAAGGTAGTTGGATCAGGG+TGG | 0.658195 | 1_4:+8035574 | None:intergenic |
| CTGCCTTCACCACTCGAAGT+GGG | 0.659608 | 1_4:+8035973 | None:intergenic |
| GAGATCGGAGCTGACAAGGT+TGG | 0.665946 | 1_4:-8035942 | Msa0147920:CDS |
| TCATTTGTGCTTAATCGGCG+AGG | 0.670046 | 1_4:+8036170 | None:intergenic |
| CAATCATTATAATCAGCGAA+AGG | 0.671533 | 1_4:+8035906 | None:intergenic |
| GTTGCAGTATACCAGCCTGA+AGG | 0.683826 | 1_4:-8036275 | Msa0147920:intron |
| TACGCCTGGTATTTGGACAA+GGG | 0.685498 | 1_4:-8036475 | Msa0147920:CDS |
| GACAGAGATGACGAGTATGG+AGG | 0.692429 | 1_4:-8036020 | Msa0147920:CDS |
| TAAAAGATTTGAACTCAACG+TGG | 0.709690 | 1_4:-8035607 | Msa0147920:CDS |
| GAGCTGACAAGGTTGGTGTG+AGG | 0.727383 | 1_4:-8035935 | Msa0147920:CDS |
| ACTGTCATATGATTGAGCCA+AGG | 0.734502 | 1_4:-8035815 | Msa0147920:CDS |
| GGAAATGGTGCTATAGCATG+TGG | 0.744862 | 1_4:-8035684 | Msa0147920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATATTAACGTATATAAT+TGG | - | chr1_4:8035707-8035726 | Msa0147920:CDS | 15.0% |
| !! | TTGATATTAACGTATATAAT+TGG | - | chr1_4:8035707-8035726 | Msa0147920:CDS | 15.0% |
| !! | TGAAATAAAATCCTTGTATT+GGG | + | chr1_4:8035674-8035693 | None:intergenic | 20.0% |
| !! | ATGAAATAAAATCCTTGTAT+TGG | + | chr1_4:8035675-8035694 | None:intergenic | 20.0% |
| !! | TGAAATAAAATCCTTGTATT+GGG | + | chr1_4:8035674-8035693 | None:intergenic | 20.0% |
| !! | ATGAAATAAAATCCTTGTAT+TGG | + | chr1_4:8035675-8035694 | None:intergenic | 20.0% |
| ! | TGTATATTTATCCCAATACA+AGG | - | chr1_4:8035660-8035679 | Msa0147920:CDS | 25.0% |
| ! | TGTATATTTATCCCAATACA+AGG | - | chr1_4:8035660-8035679 | Msa0147920:CDS | 25.0% |
| CCAAAGTTGACAGAAAAATA+TGG | + | chr1_4:8035606-8035625 | None:intergenic | 30.0% | |
| ! | CCATATTTTTCTGTCAACTT+TGG | - | chr1_4:8035603-8035622 | Msa0147920:CDS | 30.0% |
| ATACACACAAGTACCATATT+TGG | + | chr1_4:8035645-8035664 | None:intergenic | 30.0% | |
| GGATTTCATTTGTGCTTAAT+CGG | + | chr1_4:8035842-8035861 | None:intergenic | 30.0% | |
| CTTGCTTGATCAATTTCTAA+AGG | - | chr1_4:8035950-8035969 | Msa0147920:CDS | 30.0% | |
| CAATCATTATAATCAGCGAA+AGG | + | chr1_4:8036101-8036120 | None:intergenic | 30.0% | |
| ATGTAAATACCCAATACTTG+AGG | + | chr1_4:8036137-8036156 | None:intergenic | 30.0% | |
| !! | TCAAGTATTGGGTATTTACA+TGG | - | chr1_4:8036136-8036155 | Msa0147920:CDS | 30.0% |
| GCTGAATCATTGAATCAATT+GGG | - | chr1_4:8036158-8036177 | Msa0147920:CDS | 30.0% | |
| TTAAATTGTGTAACCATCCT+TGG | + | chr1_4:8036209-8036228 | None:intergenic | 30.0% | |
| !! | TCAAATCTTTTAGGAAGATC+TGG | + | chr1_4:8036389-8036408 | None:intergenic | 30.0% |
| ! | ACGTTGAGTTCAAATCTTTT+AGG | + | chr1_4:8036398-8036417 | None:intergenic | 30.0% |
| TAAAAGATTTGAACTCAACG+TGG | - | chr1_4:8036397-8036416 | Msa0147920:CDS | 30.0% | |
| TATAAAAGGTAGTTGGATCA+GGG | + | chr1_4:8036436-8036455 | None:intergenic | 30.0% | |
| ATGGATAATCACTATATCCA+AGG | + | chr1_4:8036472-8036491 | None:intergenic | 30.0% | |
| CCAAAGTTGACAGAAAAATA+TGG | + | chr1_4:8035606-8035625 | None:intergenic | 30.0% | |
| ! | CCATATTTTTCTGTCAACTT+TGG | - | chr1_4:8035603-8035622 | Msa0147920:CDS | 30.0% |
| ATACACACAAGTACCATATT+TGG | + | chr1_4:8035645-8035664 | None:intergenic | 30.0% | |
| GGATTTCATTTGTGCTTAAT+CGG | + | chr1_4:8035842-8035861 | None:intergenic | 30.0% | |
| CTTGCTTGATCAATTTCTAA+AGG | - | chr1_4:8035950-8035969 | Msa0147920:CDS | 30.0% | |
| CAATCATTATAATCAGCGAA+AGG | + | chr1_4:8036101-8036120 | None:intergenic | 30.0% | |
| ATGTAAATACCCAATACTTG+AGG | + | chr1_4:8036137-8036156 | None:intergenic | 30.0% | |
| !! | TCAAGTATTGGGTATTTACA+TGG | - | chr1_4:8036136-8036155 | Msa0147920:CDS | 30.0% |
| GCTGAATCATTGAATCAATT+GGG | - | chr1_4:8036158-8036177 | Msa0147920:CDS | 30.0% | |
| TTAAATTGTGTAACCATCCT+TGG | + | chr1_4:8036209-8036228 | None:intergenic | 30.0% | |
| !! | TCAAATCTTTTAGGAAGATC+TGG | + | chr1_4:8036389-8036408 | None:intergenic | 30.0% |
| ! | ACGTTGAGTTCAAATCTTTT+AGG | + | chr1_4:8036398-8036417 | None:intergenic | 30.0% |
| TAAAAGATTTGAACTCAACG+TGG | - | chr1_4:8036397-8036416 | Msa0147920:CDS | 30.0% | |
| TATAAAAGGTAGTTGGATCA+GGG | + | chr1_4:8036436-8036455 | None:intergenic | 30.0% | |
| ATGGATAATCACTATATCCA+AGG | + | chr1_4:8036472-8036491 | None:intergenic | 30.0% | |
| ACCATATTTGGATACTCTTC+CGG | + | chr1_4:8035633-8035652 | None:intergenic | 35.0% | |
| TTGTTTGTGCATGATATTGG+AGG | + | chr1_4:8035759-8035778 | None:intergenic | 35.0% | |
| ! | TTGGAGATATCTTTCTGAAG+AGG | + | chr1_4:8035783-8035802 | None:intergenic | 35.0% |
| TTGAAGTCATTGACAAGCAT+GGG | + | chr1_4:8035864-8035883 | None:intergenic | 35.0% | |
| ! | TTTGAAGTCATTGACAAGCA+TGG | + | chr1_4:8035865-8035884 | None:intergenic | 35.0% |
| TTTGATGGAGTAGAGATACA+TGG | - | chr1_4:8035915-8035934 | Msa0147920:CDS | 35.0% | |
| GGCTGAATCATTGAATCAAT+TGG | - | chr1_4:8036157-8036176 | Msa0147920:CDS | 35.0% | |
| !! | CTATTAGGAAGGTGTTCAAA+GGG | - | chr1_4:8036261-8036280 | Msa0147920:CDS | 35.0% |
| AAAGGGACATTTATTGTTGC+TGG | - | chr1_4:8036278-8036297 | Msa0147920:intron | 35.0% | |
| TATGATAGGAGTGAAGGAAA+TGG | - | chr1_4:8036305-8036324 | Msa0147920:intron | 35.0% | |
| GTATAAAAGGTAGTTGGATC+AGG | + | chr1_4:8036437-8036456 | None:intergenic | 35.0% | |
| TCATGCGTATAAAAGGTAGT+TGG | + | chr1_4:8036443-8036462 | None:intergenic | 35.0% | |
| TAATCACTATATCCAAGGAC+AGG | + | chr1_4:8036467-8036486 | None:intergenic | 35.0% | |
| ACCATATTTGGATACTCTTC+CGG | + | chr1_4:8035633-8035652 | None:intergenic | 35.0% | |
| TTGTTTGTGCATGATATTGG+AGG | + | chr1_4:8035759-8035778 | None:intergenic | 35.0% | |
| ! | TTGGAGATATCTTTCTGAAG+AGG | + | chr1_4:8035783-8035802 | None:intergenic | 35.0% |
| TTGAAGTCATTGACAAGCAT+GGG | + | chr1_4:8035864-8035883 | None:intergenic | 35.0% | |
| ! | TTTGAAGTCATTGACAAGCA+TGG | + | chr1_4:8035865-8035884 | None:intergenic | 35.0% |
| TTTGATGGAGTAGAGATACA+TGG | - | chr1_4:8035915-8035934 | Msa0147920:CDS | 35.0% | |
| GGCTGAATCATTGAATCAAT+TGG | - | chr1_4:8036157-8036176 | Msa0147920:CDS | 35.0% | |
| !! | CTATTAGGAAGGTGTTCAAA+GGG | - | chr1_4:8036261-8036280 | Msa0147920:CDS | 35.0% |
| AAAGGGACATTTATTGTTGC+TGG | - | chr1_4:8036278-8036297 | Msa0147920:intron | 35.0% | |
| TATGATAGGAGTGAAGGAAA+TGG | - | chr1_4:8036305-8036324 | Msa0147920:intron | 35.0% | |
| GTATAAAAGGTAGTTGGATC+AGG | + | chr1_4:8036437-8036456 | None:intergenic | 35.0% | |
| TCATGCGTATAAAAGGTAGT+TGG | + | chr1_4:8036443-8036462 | None:intergenic | 35.0% | |
| TAATCACTATATCCAAGGAC+AGG | + | chr1_4:8036467-8036486 | None:intergenic | 35.0% | |
| TCCAAATACCAGGCGTATTT+GGG | + | chr1_4:8035526-8035545 | None:intergenic | 40.0% | |
| !! | TGGCTCCTTTTTCATGAACT+TGG | + | chr1_4:8035586-8035605 | None:intergenic | 40.0% |
| GATATTGGAGGTTTACCTTC+AGG | + | chr1_4:8035747-8035766 | None:intergenic | 40.0% | |
| ! | GGCTTGTTTGTGCATGATAT+TGG | + | chr1_4:8035762-8035781 | None:intergenic | 40.0% |
| TGAAGTCATTGACAAGCATG+GGG | + | chr1_4:8035863-8035882 | None:intergenic | 40.0% | |
| AATTGCTGCAAGAAATGCCA+TGG | - | chr1_4:8035884-8035903 | Msa0147920:CDS | 40.0% | |
| GTAGAGATACATGGAGCTAA+TGG | - | chr1_4:8035924-8035943 | Msa0147920:CDS | 40.0% | |
| AGACTCTGATCCTCAAGTAT+TGG | - | chr1_4:8036124-8036143 | Msa0147920:CDS | 40.0% | |
| GACTCTGATCCTCAAGTATT+GGG | - | chr1_4:8036125-8036144 | Msa0147920:CDS | 40.0% | |
| ACTGTCATATGATTGAGCCA+AGG | - | chr1_4:8036189-8036208 | Msa0147920:CDS | 40.0% | |
| TCATATGATTGAGCCAAGGA+TGG | - | chr1_4:8036193-8036212 | Msa0147920:CDS | 40.0% | |
| AATAGGTGTCAAGGACCATT+TGG | + | chr1_4:8036246-8036265 | None:intergenic | 40.0% | |
| AATGGTCCTTGACACCTATT+AGG | - | chr1_4:8036246-8036265 | Msa0147920:CDS | 40.0% | |
| CCTTTGAACACCTTCCTAAT+AGG | + | chr1_4:8036263-8036282 | None:intergenic | 40.0% | |
| !! | CCTATTAGGAAGGTGTTCAA+AGG | - | chr1_4:8036260-8036279 | Msa0147920:CDS | 40.0% |
| TTGTTGCTGGAGGTTATGAT+AGG | - | chr1_4:8036291-8036310 | Msa0147920:intron | 40.0% | |
| GACAGGATCATGCGTATAAA+AGG | + | chr1_4:8036450-8036469 | None:intergenic | 40.0% | |
| TCCAAATACCAGGCGTATTT+GGG | + | chr1_4:8035526-8035545 | None:intergenic | 40.0% | |
| !! | TGGCTCCTTTTTCATGAACT+TGG | + | chr1_4:8035586-8035605 | None:intergenic | 40.0% |
| GATATTGGAGGTTTACCTTC+AGG | + | chr1_4:8035747-8035766 | None:intergenic | 40.0% | |
| ! | GGCTTGTTTGTGCATGATAT+TGG | + | chr1_4:8035762-8035781 | None:intergenic | 40.0% |
| TGAAGTCATTGACAAGCATG+GGG | + | chr1_4:8035863-8035882 | None:intergenic | 40.0% | |
| AATTGCTGCAAGAAATGCCA+TGG | - | chr1_4:8035884-8035903 | Msa0147920:CDS | 40.0% | |
| GTAGAGATACATGGAGCTAA+TGG | - | chr1_4:8035924-8035943 | Msa0147920:CDS | 40.0% | |
| AGACTCTGATCCTCAAGTAT+TGG | - | chr1_4:8036124-8036143 | Msa0147920:CDS | 40.0% | |
| GACTCTGATCCTCAAGTATT+GGG | - | chr1_4:8036125-8036144 | Msa0147920:CDS | 40.0% | |
| ACTGTCATATGATTGAGCCA+AGG | - | chr1_4:8036189-8036208 | Msa0147920:CDS | 40.0% | |
| TCATATGATTGAGCCAAGGA+TGG | - | chr1_4:8036193-8036212 | Msa0147920:CDS | 40.0% | |
| AATAGGTGTCAAGGACCATT+TGG | + | chr1_4:8036246-8036265 | None:intergenic | 40.0% | |
| AATGGTCCTTGACACCTATT+AGG | - | chr1_4:8036246-8036265 | Msa0147920:CDS | 40.0% | |
| CCTTTGAACACCTTCCTAAT+AGG | + | chr1_4:8036263-8036282 | None:intergenic | 40.0% | |
| !! | CCTATTAGGAAGGTGTTCAA+AGG | - | chr1_4:8036260-8036279 | Msa0147920:CDS | 40.0% |
| TTGTTGCTGGAGGTTATGAT+AGG | - | chr1_4:8036291-8036310 | Msa0147920:intron | 40.0% | |
| GACAGGATCATGCGTATAAA+AGG | + | chr1_4:8036450-8036469 | None:intergenic | 40.0% | |
| ACCCAAATACGCCTGGTATT+TGG | - | chr1_4:8035522-8035541 | Msa0147920:CDS | 45.0% | |
| GTCCAAATACCAGGCGTATT+TGG | + | chr1_4:8035527-8035546 | None:intergenic | 45.0% | |
| ATACGCCTGGTATTTGGACA+AGG | - | chr1_4:8035528-8035547 | Msa0147920:CDS | 45.0% | |
| TACGCCTGGTATTTGGACAA+GGG | - | chr1_4:8035529-8035548 | Msa0147920:CDS | 45.0% | |
| TGTTCCCTTGTCCAAATACC+AGG | + | chr1_4:8035536-8035555 | None:intergenic | 45.0% | |
| TGGTATTTGGACAAGGGAAC+AGG | - | chr1_4:8035535-8035554 | Msa0147920:CDS | 45.0% | |
| TCATGAACTTGGCGCACAAT+TGG | + | chr1_4:8035575-8035594 | None:intergenic | 45.0% | |
| GTGCGCCAAGTTCATGAAAA+AGG | - | chr1_4:8035578-8035597 | Msa0147920:CDS | 45.0% | |
| !! | GCCGGAAGAGTATCCAAATA+TGG | - | chr1_4:8035629-8035648 | Msa0147920:CDS | 45.0% |
| ATTAGCTGCAGCAGGATCAT+TGG | + | chr1_4:8035802-8035821 | None:intergenic | 45.0% | |
| ! | GGATATTGATTAGCTGCAGC+AGG | + | chr1_4:8035810-8035829 | None:intergenic | 45.0% |
| TCATTTGTGCTTAATCGGCG+AGG | + | chr1_4:8035837-8035856 | None:intergenic | 45.0% | |
| TCCATCAAAACCTGCTTCCA+TGG | + | chr1_4:8035904-8035923 | None:intergenic | 45.0% | |
| AACGACAGAGATGACGAGTA+TGG | - | chr1_4:8035981-8036000 | Msa0147920:CDS | 45.0% | |
| AAGGCAGTAGCTGATGAGAT+CGG | - | chr1_4:8036047-8036066 | Msa0147920:CDS | 45.0% | |
| ACAAGTGTGACACCACCAAA+TGG | - | chr1_4:8036228-8036247 | Msa0147920:CDS | 45.0% | |
| GTCCTTGACACCTATTAGGA+AGG | - | chr1_4:8036250-8036269 | Msa0147920:CDS | 45.0% | |
| CACCTTCCTAATAGGTGTCA+AGG | + | chr1_4:8036255-8036274 | None:intergenic | 45.0% | |
| GGGACATTTATTGTTGCTGG+AGG | - | chr1_4:8036281-8036300 | Msa0147920:intron | 45.0% | |
| GGAGGTTATGATAGGAGTGA+AGG | - | chr1_4:8036299-8036318 | Msa0147920:intron | 45.0% | |
| !! | GGAAATGGTGCTATAGCATG+TGG | - | chr1_4:8036320-8036339 | Msa0147920:intron | 45.0% |
| ! | GGCTTATGGACGTCTCTTTT+TGG | - | chr1_4:8036358-8036377 | Msa0147920:intron | 45.0% |
| AAAAGGTAGTTGGATCAGGG+TGG | + | chr1_4:8036433-8036452 | None:intergenic | 45.0% | |
| TATACGCATGATCCTGTCCT+TGG | - | chr1_4:8036452-8036471 | Msa0147920:CDS | 45.0% | |
| ACCCAAATACGCCTGGTATT+TGG | - | chr1_4:8035522-8035541 | Msa0147920:CDS | 45.0% | |
| GTCCAAATACCAGGCGTATT+TGG | + | chr1_4:8035527-8035546 | None:intergenic | 45.0% | |
| ATACGCCTGGTATTTGGACA+AGG | - | chr1_4:8035528-8035547 | Msa0147920:CDS | 45.0% | |
| TACGCCTGGTATTTGGACAA+GGG | - | chr1_4:8035529-8035548 | Msa0147920:CDS | 45.0% | |
| TGTTCCCTTGTCCAAATACC+AGG | + | chr1_4:8035536-8035555 | None:intergenic | 45.0% | |
| TGGTATTTGGACAAGGGAAC+AGG | - | chr1_4:8035535-8035554 | Msa0147920:CDS | 45.0% | |
| TCATGAACTTGGCGCACAAT+TGG | + | chr1_4:8035575-8035594 | None:intergenic | 45.0% | |
| GTGCGCCAAGTTCATGAAAA+AGG | - | chr1_4:8035578-8035597 | Msa0147920:CDS | 45.0% | |
| !! | GCCGGAAGAGTATCCAAATA+TGG | - | chr1_4:8035629-8035648 | Msa0147920:CDS | 45.0% |
| ATTAGCTGCAGCAGGATCAT+TGG | + | chr1_4:8035802-8035821 | None:intergenic | 45.0% | |
| ! | GGATATTGATTAGCTGCAGC+AGG | + | chr1_4:8035810-8035829 | None:intergenic | 45.0% |
| TCATTTGTGCTTAATCGGCG+AGG | + | chr1_4:8035837-8035856 | None:intergenic | 45.0% | |
| TCCATCAAAACCTGCTTCCA+TGG | + | chr1_4:8035904-8035923 | None:intergenic | 45.0% | |
| AACGACAGAGATGACGAGTA+TGG | - | chr1_4:8035981-8036000 | Msa0147920:CDS | 45.0% | |
| AAGGCAGTAGCTGATGAGAT+CGG | - | chr1_4:8036047-8036066 | Msa0147920:CDS | 45.0% | |
| ACAAGTGTGACACCACCAAA+TGG | - | chr1_4:8036228-8036247 | Msa0147920:CDS | 45.0% | |
| GTCCTTGACACCTATTAGGA+AGG | - | chr1_4:8036250-8036269 | Msa0147920:CDS | 45.0% | |
| CACCTTCCTAATAGGTGTCA+AGG | + | chr1_4:8036255-8036274 | None:intergenic | 45.0% | |
| GGGACATTTATTGTTGCTGG+AGG | - | chr1_4:8036281-8036300 | Msa0147920:intron | 45.0% | |
| GGAGGTTATGATAGGAGTGA+AGG | - | chr1_4:8036299-8036318 | Msa0147920:intron | 45.0% | |
| !! | GGAAATGGTGCTATAGCATG+TGG | - | chr1_4:8036320-8036339 | Msa0147920:intron | 45.0% |
| ! | GGCTTATGGACGTCTCTTTT+TGG | - | chr1_4:8036358-8036377 | Msa0147920:intron | 45.0% |
| AAAAGGTAGTTGGATCAGGG+TGG | + | chr1_4:8036433-8036452 | None:intergenic | 45.0% | |
| TATACGCATGATCCTGTCCT+TGG | - | chr1_4:8036452-8036471 | Msa0147920:CDS | 45.0% | |
| TTGGACAAGGGAACAGGTAG+AGG | - | chr1_4:8035541-8035560 | Msa0147920:CDS | 50.0% | |
| TTCTGTCAACTTTGGCACGC+CGG | - | chr1_4:8035611-8035630 | Msa0147920:CDS | 50.0% | |
| GTTGCAGTATACCAGCCTGA+AGG | - | chr1_4:8035729-8035748 | Msa0147920:CDS | 50.0% | |
| TTGGAGGTTTACCTTCAGGC+TGG | + | chr1_4:8035743-8035762 | None:intergenic | 50.0% | |
| TTTGTGCTTAATCGGCGAGG+AGG | + | chr1_4:8035834-8035853 | None:intergenic | 50.0% | |
| GCAAGAAATGCCATGGAAGC+AGG | - | chr1_4:8035891-8035910 | Msa0147920:CDS | 50.0% | |
| !! | GCCATGGAAGCAGGTTTTGA+TGG | - | chr1_4:8035900-8035919 | Msa0147920:CDS | 50.0% |
| GACAGAGATGACGAGTATGG+AGG | - | chr1_4:8035984-8036003 | Msa0147920:CDS | 50.0% | |
| ! | TTGTTGCTTCCCACTTCGAG+TGG | - | chr1_4:8036022-8036041 | Msa0147920:CDS | 50.0% |
| TGATGAGATCGGAGCTGACA+AGG | - | chr1_4:8036058-8036077 | Msa0147920:CDS | 50.0% | |
| AGGTGTCAAGGACCATTTGG+TGG | + | chr1_4:8036243-8036262 | None:intergenic | 50.0% | |
| !! | ATGTGGTGCTGCTGATCTAG+TGG | - | chr1_4:8036337-8036356 | Msa0147920:intron | 50.0% |
| GCTGCTGATCTAGTGGCTTA+TGG | - | chr1_4:8036344-8036363 | Msa0147920:intron | 50.0% | |
| TTGGACAAGGGAACAGGTAG+AGG | - | chr1_4:8035541-8035560 | Msa0147920:CDS | 50.0% | |
| TTCTGTCAACTTTGGCACGC+CGG | - | chr1_4:8035611-8035630 | Msa0147920:CDS | 50.0% | |
| GTTGCAGTATACCAGCCTGA+AGG | - | chr1_4:8035729-8035748 | Msa0147920:CDS | 50.0% | |
| TTGGAGGTTTACCTTCAGGC+TGG | + | chr1_4:8035743-8035762 | None:intergenic | 50.0% | |
| TTTGTGCTTAATCGGCGAGG+AGG | + | chr1_4:8035834-8035853 | None:intergenic | 50.0% | |
| GCAAGAAATGCCATGGAAGC+AGG | - | chr1_4:8035891-8035910 | Msa0147920:CDS | 50.0% | |
| !! | GCCATGGAAGCAGGTTTTGA+TGG | - | chr1_4:8035900-8035919 | Msa0147920:CDS | 50.0% |
| GACAGAGATGACGAGTATGG+AGG | - | chr1_4:8035984-8036003 | Msa0147920:CDS | 50.0% | |
| ! | TTGTTGCTTCCCACTTCGAG+TGG | - | chr1_4:8036022-8036041 | Msa0147920:CDS | 50.0% |
| TGATGAGATCGGAGCTGACA+AGG | - | chr1_4:8036058-8036077 | Msa0147920:CDS | 50.0% | |
| AGGTGTCAAGGACCATTTGG+TGG | + | chr1_4:8036243-8036262 | None:intergenic | 50.0% | |
| !! | ATGTGGTGCTGCTGATCTAG+TGG | - | chr1_4:8036337-8036356 | Msa0147920:intron | 50.0% |
| GCTGCTGATCTAGTGGCTTA+TGG | - | chr1_4:8036344-8036363 | Msa0147920:intron | 50.0% | |
| CAAGGGAACAGGTAGAGGCA+TGG | - | chr1_4:8035546-8035565 | Msa0147920:CDS | 55.0% | |
| CTTCCCACTTCGAGTGGTGA+AGG | - | chr1_4:8036028-8036047 | Msa0147920:CDS | 55.0% | |
| CTGCCTTCACCACTCGAAGT+GGG | + | chr1_4:8036034-8036053 | None:intergenic | 55.0% | |
| ACTGCCTTCACCACTCGAAG+TGG | + | chr1_4:8036035-8036054 | None:intergenic | 55.0% | |
| GAGATCGGAGCTGACAAGGT+TGG | - | chr1_4:8036062-8036081 | Msa0147920:CDS | 55.0% | |
| !! | GAGCTGACAAGGTTGGTGTG+AGG | - | chr1_4:8036069-8036088 | Msa0147920:CDS | 55.0% |
| CAAGGGAACAGGTAGAGGCA+TGG | - | chr1_4:8035546-8035565 | Msa0147920:CDS | 55.0% | |
| CTTCCCACTTCGAGTGGTGA+AGG | - | chr1_4:8036028-8036047 | Msa0147920:CDS | 55.0% | |
| CTGCCTTCACCACTCGAAGT+GGG | + | chr1_4:8036034-8036053 | None:intergenic | 55.0% | |
| ACTGCCTTCACCACTCGAAG+TGG | + | chr1_4:8036035-8036054 | None:intergenic | 55.0% | |
| GAGATCGGAGCTGACAAGGT+TGG | - | chr1_4:8036062-8036081 | Msa0147920:CDS | 55.0% | |
| !! | GAGCTGACAAGGTTGGTGTG+AGG | - | chr1_4:8036069-8036088 | Msa0147920:CDS | 55.0% |
| GTGCTTAATCGGCGAGGAGG+TGG | + | chr1_4:8035831-8035850 | None:intergenic | 60.0% | |
| GTGCTTAATCGGCGAGGAGG+TGG | + | chr1_4:8035831-8035850 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 8035521 | 8036505 | 8035521 | ID=Msa0147920;Name=Msa0147920 |
| chr1_4 | mRNA | 8035521 | 8036505 | 8035521 | ID=Msa0147920-mRNA-1;Parent=Msa0147920;Name=Msa0147920-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|0|2|0|300 |
| chr1_4 | exon | 8036376 | 8036505 | 8036376 | ID=Msa0147920-mRNA-1:exon:3449;Parent=Msa0147920-mRNA-1 |
| chr1_4 | exon | 8035521 | 8036290 | 8035521 | ID=Msa0147920-mRNA-1:exon:3448;Parent=Msa0147920-mRNA-1 |
| chr1_4 | CDS | 8036376 | 8036505 | 8036376 | ID=Msa0147920-mRNA-1:cds;Parent=Msa0147920-mRNA-1 |
| chr1_4 | CDS | 8035521 | 8036290 | 8035521 | ID=Msa0147920-mRNA-1:cds;Parent=Msa0147920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
