Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438910 | XP_024625734.1 | 90.977 | 266 | 19 | 1 | 1 | 266 | 1 | 261 | 5.46e-145 | 428 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438910 | sp|Q66GQ2|Y5162_ARATH | 34.365 | 323 | 121 | 6 | 16 | 265 | 17 | 321 | 3.10e-41 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438910 | A0A396H8E0 | 90.977 | 266 | 19 | 1 | 1 | 266 | 1 | 261 | 2.61e-145 | 428 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa1438910 | 0.805362 | 1.384822e-49 | -8.615850e-47 |
| Msa0014800 | Msa1438910 | 0.813304 | 2.738811e-51 | -8.615850e-47 |
| Msa0023470 | Msa1438910 | 0.804436 | 2.162722e-49 | -8.615850e-47 |
| Msa0053900 | Msa1438910 | 0.802631 | 5.118725e-49 | -8.615850e-47 |
| Msa0108560 | Msa1438910 | 0.816961 | 4.220784e-52 | -8.615850e-47 |
| Msa1371580 | Msa1438910 | 0.807146 | 5.829781e-50 | -8.615850e-47 |
| Msa1372580 | Msa1438910 | 0.807663 | 4.527415e-50 | -8.615850e-47 |
| Msa1378230 | Msa1438910 | 0.805787 | 1.127500e-49 | -8.615850e-47 |
| Msa1379710 | Msa1438910 | 0.808976 | 2.377298e-50 | -8.615850e-47 |
| Msa1382930 | Msa1438910 | 0.997078 | 1.530207e-236 | -8.615850e-47 |
| Msa1423450 | Msa1438910 | 0.808309 | 3.299703e-50 | -8.615850e-47 |
| Msa1425010 | Msa1438910 | 0.841732 | 3.974288e-58 | -8.615850e-47 |
| Msa1427830 | Msa1438910 | 0.809017 | 2.329487e-50 | -8.615850e-47 |
| Msa1429900 | Msa1438910 | 0.803630 | 3.180748e-49 | -8.615850e-47 |
| Msa1435370 | Msa1438910 | 0.818353 | 2.048585e-52 | -8.615850e-47 |
| Msa1437680 | Msa1438910 | 0.840039 | 1.105586e-57 | -8.615850e-47 |
| Msa1438910 | Msa1440910 | 0.824882 | 6.344287e-54 | -8.615850e-47 |
| Msa1438910 | Msa1454110 | 0.807420 | 5.098096e-50 | -8.615850e-47 |
| Msa0615310 | Msa1438910 | 0.804701 | 1.903492e-49 | -8.615850e-47 |
| Msa0628740 | Msa1438910 | 0.801780 | 7.660599e-49 | -8.615850e-47 |
| Msa0633060 | Msa1438910 | 0.805643 | 1.208904e-49 | -8.615850e-47 |
| Msa0647830 | Msa1438910 | 0.807686 | 4.478681e-50 | -8.615850e-47 |
| Msa0654720 | Msa1438910 | 0.820074 | 8.313393e-53 | -8.615850e-47 |
| Msa0660300 | Msa1438910 | 0.809107 | 2.227683e-50 | -8.615850e-47 |
| Msa0662650 | Msa1438910 | 0.803862 | 2.846341e-49 | -8.615850e-47 |
| Msa0678820 | Msa1438910 | 0.806671 | 7.343864e-50 | -8.615850e-47 |
| Msa0688670 | Msa1438910 | 0.974256 | 7.762178e-138 | -8.615850e-47 |
| Msa0694250 | Msa1438910 | 0.805952 | 1.041209e-49 | -8.615850e-47 |
| Msa0697140 | Msa1438910 | 0.805628 | 1.217690e-49 | -8.615850e-47 |
| Msa0698360 | Msa1438910 | 0.826973 | 2.021435e-54 | -8.615850e-47 |
| Msa0708860 | Msa1438910 | 0.805583 | 1.244384e-49 | -8.615850e-47 |
| Msa0712080 | Msa1438910 | 0.809579 | 1.764361e-50 | -8.615850e-47 |
| Msa0714340 | Msa1438910 | 0.815835 | 7.539668e-52 | -8.615850e-47 |
| Msa0714380 | Msa1438910 | 0.804853 | 1.769197e-49 | -8.615850e-47 |
| Msa0722930 | Msa1438910 | 0.809294 | 2.031272e-50 | -8.615850e-47 |
| Msa0723140 | Msa1438910 | 0.805954 | 1.040021e-49 | -8.615850e-47 |
| Msa0724560 | Msa1438910 | 0.831530 | 1.584107e-55 | -8.615850e-47 |
| Msa0731180 | Msa1438910 | 0.805894 | 1.070643e-49 | -8.615850e-47 |
| Msa0749930 | Msa1438910 | 0.843672 | 1.213020e-58 | -8.615850e-47 |
| Msa0756310 | Msa1438910 | 0.814770 | 1.300819e-51 | -8.615850e-47 |
| Msa0771720 | Msa1438910 | 0.807439 | 5.052942e-50 | -8.615850e-47 |
| Msa0830420 | Msa1438910 | 0.843609 | 1.261128e-58 | -8.615850e-47 |
| Msa0835730 | Msa1438910 | 0.818327 | 2.076632e-52 | -8.615850e-47 |
| Msa0147920 | Msa1438910 | 0.804544 | 2.052643e-49 | -8.615850e-47 |
| Msa0148360 | Msa1438910 | 0.806855 | 6.715452e-50 | -8.615850e-47 |
| Msa0178860 | Msa1438910 | -0.806970 | 6.350554e-50 | -8.615850e-47 |
| Msa0188630 | Msa1438910 | 0.802386 | 5.751390e-49 | -8.615850e-47 |
| Msa0220440 | Msa1438910 | 0.812352 | 4.426413e-51 | -8.615850e-47 |
| Msa0222340 | Msa1438910 | 0.804074 | 2.572187e-49 | -8.615850e-47 |
| Msa0223380 | Msa1438910 | 0.801696 | 7.971413e-49 | -8.615850e-47 |
| Msa0233610 | Msa1438910 | 0.801763 | 7.723900e-49 | -8.615850e-47 |
| Msa0236440 | Msa1438910 | 0.822010 | 2.976840e-53 | -8.615850e-47 |
| Msa1230830 | Msa1438910 | 0.807251 | 5.537982e-50 | -8.615850e-47 |
| Msa1233500 | Msa1438910 | 0.844492 | 7.311985e-59 | -8.615850e-47 |
| Msa1279210 | Msa1438910 | 0.825490 | 4.556623e-54 | -8.615850e-47 |
| Msa1282920 | Msa1438910 | 0.828107 | 1.080335e-54 | -8.615850e-47 |
| Msa1294480 | Msa1438910 | 0.808266 | 3.370528e-50 | -8.615850e-47 |
| Msa1306750 | Msa1438910 | 0.828303 | 9.690475e-55 | -8.615850e-47 |
| Msa1307740 | Msa1438910 | 0.830693 | 2.543042e-55 | -8.615850e-47 |
| Msa1314340 | Msa1438910 | 0.813169 | 2.932571e-51 | -8.615850e-47 |
| Msa1322190 | Msa1438910 | 0.840844 | 6.807714e-58 | -8.615850e-47 |
| Msa1328700 | Msa1438910 | 0.834619 | 2.699932e-56 | -8.615850e-47 |
| Msa1328850 | Msa1438910 | 0.807214 | 5.637893e-50 | -8.615850e-47 |
| Msa1333810 | Msa1438910 | 0.805447 | 1.329114e-49 | -8.615850e-47 |
| Msa1340650 | Msa1438910 | 0.806715 | 7.189872e-50 | -8.615850e-47 |
| Msa0379640 | Msa1438910 | 0.820846 | 5.528691e-53 | -8.615850e-47 |
| Msa0388840 | Msa1438910 | 0.801311 | 9.558611e-49 | -8.615850e-47 |
| Msa0389810 | Msa1438910 | 0.831142 | 1.974241e-55 | -8.615850e-47 |
| Msa0419620 | Msa1438910 | -0.836795 | 7.589679e-57 | -8.615850e-47 |
| Msa0428930 | Msa1438910 | 0.807622 | 4.620645e-50 | -8.615850e-47 |
| Msa0464900 | Msa1438910 | 0.825315 | 5.011121e-54 | -8.615850e-47 |
| Msa0465680 | Msa1438910 | -0.818974 | 1.481197e-52 | -8.615850e-47 |
| Msa0468130 | Msa1438910 | 0.826609 | 2.469492e-54 | -8.615850e-47 |
| Msa0475490 | Msa1438910 | 0.808459 | 3.064735e-50 | -8.615850e-47 |
| Msa0477130 | Msa1438910 | -0.810362 | 1.197148e-50 | -8.615850e-47 |
| Msa0482190 | Msa1438910 | -0.802768 | 4.795312e-49 | -8.615850e-47 |
| Msa0982270 | Msa1438910 | 0.839364 | 1.656642e-57 | -8.615850e-47 |
| Msa0999040 | Msa1438910 | 0.823454 | 1.373223e-53 | -8.615850e-47 |
| Msa1000020 | Msa1438910 | 0.800612 | 1.328055e-48 | -8.615850e-47 |
| Msa1002480 | Msa1438910 | 0.970473 | 1.139412e-131 | -8.615850e-47 |
| Msa1021540 | Msa1438910 | 0.815101 | 1.098309e-51 | -8.615850e-47 |
| Msa1037700 | Msa1438910 | -0.818999 | 1.461792e-52 | -8.615850e-47 |
| Msa1070850 | Msa1438910 | 0.811436 | 7.007621e-51 | -8.615850e-47 |
| Msa1080790 | Msa1438910 | 0.807848 | 4.136566e-50 | -8.615850e-47 |
| Msa1082500 | Msa1438910 | 0.805988 | 1.023127e-49 | -8.615850e-47 |
| Msa1092090 | Msa1438910 | 0.838739 | 2.404866e-57 | -8.615850e-47 |
| Msa1100480 | Msa1438910 | 0.823448 | 1.377932e-53 | -8.615850e-47 |
| Msa0269450 | Msa1438910 | 0.805528 | 1.278146e-49 | -8.615850e-47 |
| Msa0270100 | Msa1438910 | 0.804510 | 2.087114e-49 | -8.615850e-47 |
| Msa0270270 | Msa1438910 | 0.804691 | 1.912966e-49 | -8.615850e-47 |
| Msa0282170 | Msa1438910 | 0.803286 | 3.748319e-49 | -8.615850e-47 |
| Msa0282250 | Msa1438910 | 0.809246 | 2.080486e-50 | -8.615850e-47 |
| Msa0299580 | Msa1438910 | 0.811638 | 6.334100e-51 | -8.615850e-47 |
| Msa0309550 | Msa1438910 | 0.805452 | 1.325952e-49 | -8.615850e-47 |
| Msa0323180 | Msa1438910 | 0.819346 | 1.218708e-52 | -8.615850e-47 |
| Msa1118110 | Msa1438910 | 0.808653 | 2.786861e-50 | -8.615850e-47 |
| Msa1118750 | Msa1438910 | 0.803330 | 3.670861e-49 | -8.615850e-47 |
| Msa1118930 | Msa1438910 | 0.813659 | 2.288433e-51 | -8.615850e-47 |
| Msa1124540 | Msa1438910 | -0.804438 | 2.160296e-49 | -8.615850e-47 |
| Msa1130110 | Msa1438910 | 0.972746 | 2.851745e-135 | -8.615850e-47 |
| Msa1130210 | Msa1438910 | -0.800455 | 1.429897e-48 | -8.615850e-47 |
| Msa1132950 | Msa1438910 | 0.802458 | 5.557149e-49 | -8.615850e-47 |
| Msa1143270 | Msa1438910 | 0.804049 | 2.603404e-49 | -8.615850e-47 |
| Msa1148130 | Msa1438910 | 0.808108 | 3.641646e-50 | -8.615850e-47 |
| Msa1158670 | Msa1438910 | 0.818188 | 2.233081e-52 | -8.615850e-47 |
| Msa1172670 | Msa1438910 | 0.815968 | 7.042718e-52 | -8.615850e-47 |
| Msa1187520 | Msa1438910 | 0.809944 | 1.473327e-50 | -8.615850e-47 |
| Msa1199560 | Msa1438910 | 0.830501 | 2.834777e-55 | -8.615850e-47 |
| Msa1206020 | Msa1438910 | 0.804554 | 2.043087e-49 | -8.615850e-47 |
| Msa1207380 | Msa1438910 | 0.806382 | 8.453271e-50 | -8.615850e-47 |
| Msa1208180 | Msa1438910 | 0.806887 | 6.612727e-50 | -8.615850e-47 |
| Msa1217660 | Msa1438910 | 0.818518 | 1.879971e-52 | -8.615850e-47 |
| Msa1217810 | Msa1438910 | 0.852499 | 4.434919e-61 | -8.615850e-47 |
| Msa1217830 | Msa1438910 | 0.810500 | 1.117475e-50 | -8.615850e-47 |
| Msa1224500 | Msa1438910 | 0.814028 | 1.897639e-51 | -8.615850e-47 |
| Msa0484780 | Msa1438910 | 0.820076 | 8.304519e-53 | -8.615850e-47 |
| Msa0502100 | Msa1438910 | 0.800719 | 1.263124e-48 | -8.615850e-47 |
| Msa0511720 | Msa1438910 | -0.836314 | 1.005992e-56 | -8.615850e-47 |
| Msa0527250 | Msa1438910 | 0.807210 | 5.650097e-50 | -8.615850e-47 |
| Msa0543900 | Msa1438910 | 0.805913 | 1.060787e-49 | -8.615850e-47 |
| Msa0553460 | Msa1438910 | 0.805007 | 1.643497e-49 | -8.615850e-47 |
| Msa0561230 | Msa1438910 | 0.817138 | 3.851884e-52 | -8.615850e-47 |
| Msa0575470 | Msa1438910 | 0.842401 | 2.644146e-58 | -8.615850e-47 |
| Msa0599580 | Msa1438910 | 0.812925 | 3.316327e-51 | -8.615850e-47 |
| Msa0599770 | Msa1438910 | 0.806009 | 1.012842e-49 | -8.615850e-47 |
| Msa0848900 | Msa1438910 | 0.830018 | 3.718267e-55 | -8.615850e-47 |
| Msa0869120 | Msa1438910 | 0.801379 | 9.259283e-49 | -8.615850e-47 |
| Msa0877410 | Msa1438910 | 0.822051 | 2.913076e-53 | -8.615850e-47 |
| Msa0882510 | Msa1438910 | 0.800101 | 1.687926e-48 | -8.615850e-47 |
| Msa0899230 | Msa1438910 | 0.804370 | 2.232015e-49 | -8.615850e-47 |
| Msa0908170 | Msa1438910 | 0.821881 | 3.189091e-53 | -8.615850e-47 |
| Msa0910980 | Msa1438910 | -0.812063 | 5.119434e-51 | -8.615850e-47 |
| Msa0927670 | Msa1438910 | 0.824616 | 7.330698e-54 | -8.615850e-47 |
| Msa0944550 | Msa1438910 | 0.818227 | 2.187896e-52 | -8.615850e-47 |
| Msa0944770 | Msa1438910 | 0.804355 | 2.247830e-49 | -8.615850e-47 |
| Msa0960160 | Msa1438910 | 0.820744 | 5.834226e-53 | -8.615850e-47 |
| Msa0962770 | Msa1438910 | 0.803045 | 4.204062e-49 | -8.615850e-47 |
| Msa0965520 | Msa1438910 | 0.818375 | 2.025443e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438910 | MtrunA17_Chr7g0275251 | 90.977 | 266 | 19 | 1 | 1 | 266 | 1 | 261 | 5.03e-149 | 428 |
| Msa1438910 | MtrunA17_Chr8g0347871 | 45.361 | 291 | 107 | 9 | 15 | 265 | 14 | 292 | 5.69e-55 | 186 |
| Msa1438910 | MtrunA17_Chr5g0397031 | 40.149 | 269 | 102 | 5 | 54 | 266 | 60 | 325 | 6.98e-47 | 166 |
| Msa1438910 | MtrunA17_Chr7g0266861 | 29.012 | 324 | 141 | 12 | 22 | 265 | 36 | 350 | 8.22e-20 | 89.0 |
| Msa1438910 | MtrunA17_Chr3g0098801 | 29.008 | 131 | 89 | 1 | 135 | 265 | 199 | 325 | 1.09e-11 | 65.1 |
| Msa1438910 | MtrunA17_Chr2g0321731 | 31.111 | 135 | 92 | 1 | 116 | 250 | 205 | 338 | 2.04e-11 | 64.3 |
| Msa1438910 | MtrunA17_Chr5g0444041 | 27.737 | 137 | 89 | 1 | 129 | 265 | 188 | 314 | 4.13e-11 | 63.2 |
| Msa1438910 | MtrunA17_Chr4g0026051 | 26.384 | 307 | 157 | 10 | 22 | 265 | 48 | 348 | 4.70e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438910 | AT5G41620.1 | 34.365 | 323 | 121 | 6 | 16 | 265 | 17 | 321 | 3.15e-42 | 153 |
| Msa1438910 | AT5G41620.4 | 42.211 | 199 | 90 | 1 | 92 | 265 | 6 | 204 | 1.87e-37 | 139 |
| Msa1438910 | AT5G41620.3 | 42.211 | 199 | 90 | 1 | 92 | 265 | 6 | 204 | 1.87e-37 | 139 |
| Msa1438910 | AT1G64180.1 | 35.600 | 250 | 108 | 4 | 62 | 262 | 61 | 306 | 7.73e-35 | 132 |
| Msa1438910 | AT5G41620.2 | 48.819 | 127 | 65 | 0 | 139 | 265 | 36 | 162 | 7.13e-28 | 112 |
| Msa1438910 | AT3G11590.1 | 30.030 | 333 | 144 | 9 | 13 | 265 | 35 | 358 | 1.35e-25 | 106 |
| Msa1438910 | AT2G46250.1 | 33.456 | 272 | 127 | 6 | 27 | 263 | 20 | 272 | 7.24e-24 | 100 |
| Msa1438910 | AT3G11590.2 | 37.795 | 127 | 79 | 0 | 139 | 265 | 70 | 196 | 2.20e-17 | 82.0 |
| Msa1438910 | AT2G46250.2 | 39.716 | 141 | 72 | 1 | 123 | 263 | 54 | 181 | 3.03e-15 | 75.5 |
| Msa1438910 | AT1G50660.1 | 26.277 | 137 | 93 | 2 | 129 | 265 | 212 | 340 | 1.24e-12 | 68.2 |
| Msa1438910 | AT3G20350.1 | 23.316 | 193 | 131 | 4 | 75 | 265 | 140 | 317 | 6.29e-12 | 66.2 |
Find 108 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTCCTTGACTTCTTTAA+TGG | 0.167681 | tig0028672:-10449 | None:intergenic |
| GGTGGAAAAGTTGAAACTTT+TGG | 0.234292 | tig0028672:+8507 | Msa1438910:CDS |
| AGTAAAAGACAATACATTTA+TGG | 0.302608 | tig0028672:+10945 | Msa1438910:three_prime_UTR |
| TTCATAATCTCTTACTCCTT+TGG | 0.317548 | tig0028672:-10179 | None:intergenic |
| TCACCCTTGCCTACCTTCAT+TGG | 0.324543 | tig0028672:+10471 | Msa1438910:three_prime_UTR |
| GCGGATAAGGATCGCATTAA+TGG | 0.328056 | tig0028672:+10232 | Msa1438910:three_prime_UTR |
| GAGGGGAAATCAAGTGAAAT+TGG | 0.348447 | tig0028672:+10616 | Msa1438910:three_prime_UTR |
| CCATTCTGCAGTTACAGTTA+AGG | 0.372039 | tig0028672:+10840 | Msa1438910:three_prime_UTR |
| TCAAAATTTCAAGTTGAAGA+TGG | 0.377914 | tig0028672:+8441 | Msa1438910:exon |
| ATTGAGCTAAGGCAATTAGA+AGG | 0.381758 | tig0028672:-9426 | None:intergenic |
| TTCTAATTGCCTTAGCTCAA+TGG | 0.385938 | tig0028672:+9428 | Msa1438910:CDS |
| CACTAGCCAGCTTCTGATAC+AGG | 0.387417 | tig0028672:-10058 | None:intergenic |
| TACTTCACATTTCAGAGGCT+TGG | 0.392687 | tig0028672:+10275 | Msa1438910:three_prime_UTR |
| ATTGGATTCCTTTCAACTAA+AGG | 0.395468 | tig0028672:+10489 | Msa1438910:three_prime_UTR |
| ACTGCTTGAAGCAAGGTTAG+AGG | 0.396153 | tig0028672:+10972 | Msa1438910:three_prime_UTR |
| GAAAATGAATAAGCAGGAAA+TGG | 0.398382 | tig0028672:+9902 | Msa1438910:CDS |
| CATTCTGCAGTTACAGTTAA+GGG | 0.406187 | tig0028672:+10841 | Msa1438910:three_prime_UTR |
| TTGGAGAAGAGAGGAGGAAG+AGG | 0.410484 | tig0028672:+8526 | Msa1438910:CDS |
| AGACTGAGACATGTTGAAAT+CGG | 0.412710 | tig0028672:-10902 | None:intergenic |
| GAAAAGGGAAGAAGGAATAA+TGG | 0.415845 | tig0028672:+8486 | Msa1438910:CDS |
| TGTTTCCAACTAACTGTTCA+AGG | 0.418652 | tig0028672:-10753 | None:intergenic |
| TATGCATAATAGTGCGGATA+AGG | 0.427280 | tig0028672:+10219 | Msa1438910:three_prime_UTR |
| CACAGCCTTGAACAGTTAGT+TGG | 0.447691 | tig0028672:+10748 | Msa1438910:three_prime_UTR |
| TAGCCGGCGTCTTGAAGAAC+AGG | 0.450663 | tig0028672:+9794 | Msa1438910:CDS |
| ATGTGATTCTATTCTACAAA+AGG | 0.451168 | tig0028672:-11085 | None:intergenic |
| TATATCCTGAGAGTATTTGC+AGG | 0.458388 | tig0028672:+10803 | Msa1438910:three_prime_UTR |
| CTTAACAAGTGCTTTGTTGA+GGG | 0.464066 | tig0028672:+10598 | Msa1438910:three_prime_UTR |
| CCAACAAGTTTGAACAGAAA+AGG | 0.465731 | tig0028672:+10560 | Msa1438910:three_prime_UTR |
| TATTGTCTCCTTTAGTTGAA+AGG | 0.466986 | tig0028672:-10497 | None:intergenic |
| ATCAGTCGACAGAAATTGTT+CGG | 0.469683 | tig0028672:+9386 | Msa1438910:CDS |
| TTTGTCATCAGAAGGTGATA+AGG | 0.472314 | tig0028672:+10780 | Msa1438910:three_prime_UTR |
| TATGAGGAGGCTCATGGTGG+TGG | 0.473227 | tig0028672:-8690 | None:intergenic |
| GAAATCTCTGTGCTAAACTC+TGG | 0.476454 | tig0028672:+8656 | Msa1438910:CDS |
| AACTCTTGTTGATGAGAAGA+AGG | 0.480434 | tig0028672:-8598 | None:intergenic |
| GTGACATGAATTAATTCCCT+TGG | 0.485875 | tig0028672:-10728 | None:intergenic |
| AGAAAAGAAAATGAATAAGC+AGG | 0.487246 | tig0028672:+9896 | Msa1438910:CDS |
| TTAATGGTGATAGCCTTGAT+AGG | 0.491514 | tig0028672:+10248 | Msa1438910:three_prime_UTR |
| TACTTACTTCCATTGAGCTA+AGG | 0.494927 | tig0028672:-9437 | None:intergenic |
| GAGAACCTTGACTAACTCTC+TGG | 0.496123 | tig0028672:-9766 | None:intergenic |
| AAAGTCCACCAGAAAATGAT+AGG | 0.498720 | tig0028672:+10698 | Msa1438910:three_prime_UTR |
| CCTTGACTTCTTTAATGGAG+GGG | 0.499105 | tig0028672:-10444 | None:intergenic |
| TCCTTGACTTCTTTAATGGA+GGG | 0.499288 | tig0028672:-10445 | None:intergenic |
| AGGAAGAGATTGAAGATGAA+AGG | 0.499321 | tig0028672:+10012 | Msa1438910:CDS |
| CTCGAGTCTCTAGCAGATGC+TGG | 0.502686 | tig0028672:-9327 | None:intergenic |
| AAGCAAGTTCAAGATGGTAT+TGG | 0.504529 | tig0028672:+10319 | Msa1438910:three_prime_UTR |
| AGAAGAGAGGAGGAAGAGGA+AGG | 0.512890 | tig0028672:+8530 | Msa1438910:CDS |
| TTCCTTGACTTCTTTAATGG+AGG | 0.515224 | tig0028672:-10446 | None:intergenic |
| GACTGAGACATGTTGAAATC+GGG | 0.515513 | tig0028672:-10901 | None:intergenic |
| CATCACACAAATTCTCCAAA+AGG | 0.518761 | tig0028672:-10150 | None:intergenic |
| AGAAAGCCTGTATCAGAAGC+TGG | 0.520623 | tig0028672:+10052 | Msa1438910:CDS |
| GTCTACTAACAAATTACCTA+GGG | 0.524454 | tig0028672:+10921 | Msa1438910:three_prime_UTR |
| CACCAGAAAATGATAGGTGC+AGG | 0.525944 | tig0028672:+10704 | Msa1438910:three_prime_UTR |
| CCCCTCCATTAAAGAAGTCA+AGG | 0.526840 | tig0028672:+10444 | Msa1438910:three_prime_UTR |
| AGTTGAAAGGAATCCAATGA+AGG | 0.527897 | tig0028672:-10484 | None:intergenic |
| TTCAAACTTGTTGGTACCAA+CGG | 0.528206 | tig0028672:-10551 | None:intergenic |
| CAACTATTGAATGTGTCTCT+AGG | 0.530200 | tig0028672:-10351 | None:intergenic |
| TGTGAAGTATTAGCCTATCA+AGG | 0.530785 | tig0028672:-10261 | None:intergenic |
| AACAGTTCTTTGTCATCAGA+AGG | 0.531010 | tig0028672:+10772 | Msa1438910:three_prime_UTR |
| AATAGTGAAAGCTCTGATAG+TGG | 0.535399 | tig0028672:+9833 | Msa1438910:CDS |
| GCTTCCTCGGCAAAATTATG+AGG | 0.538410 | tig0028672:-10526 | None:intergenic |
| GGTACCAACGGAAGCTTCCT+CGG | 0.539258 | tig0028672:-10539 | None:intergenic |
| TGTATGGAGAAAAGGGAAGA+AGG | 0.539368 | tig0028672:+8478 | Msa1438910:CDS |
| CCTTAACTGTAACTGCAGAA+TGG | 0.540574 | tig0028672:-10840 | None:intergenic |
| TCTTCCCTGCAAATACTCTC+AGG | 0.540737 | tig0028672:-10808 | None:intergenic |
| AAATCTCTGTGCTAAACTCT+GGG | 0.540999 | tig0028672:+8657 | Msa1438910:CDS |
| ACTTAACAAGTGCTTTGTTG+AGG | 0.542539 | tig0028672:+10597 | Msa1438910:three_prime_UTR |
| AGTCTACTAACAAATTACCT+AGG | 0.542626 | tig0028672:+10920 | Msa1438910:three_prime_UTR |
| GTTCAACACCACCACCCACT+TGG | 0.555840 | tig0028672:+8560 | Msa1438910:CDS |
| TTGAGCTAAGGCAATTAGAA+GGG | 0.559447 | tig0028672:-9425 | None:intergenic |
| TTAACAAGTGCTTTGTTGAG+GGG | 0.561075 | tig0028672:+10599 | Msa1438910:three_prime_UTR |
| TGGCAAAACTGCTTGAAGCA+AGG | 0.561650 | tig0028672:+10965 | Msa1438910:three_prime_UTR |
| ACAAGTCTCCAAGTGGGTGG+TGG | 0.563442 | tig0028672:-8568 | None:intergenic |
| TCACACAAAGTTGATTCTCT+AGG | 0.566264 | tig0028672:-10667 | None:intergenic |
| ACTAGATCTTTCTCAAACAC+AGG | 0.567197 | tig0028672:+9857 | Msa1438910:CDS |
| TCAAGGTTCTCAAACGTAGC+CGG | 0.567882 | tig0028672:+9778 | Msa1438910:CDS |
| GCTAATACTTCACATTTCAG+AGG | 0.570361 | tig0028672:+10270 | Msa1438910:three_prime_UTR |
| TCATAGTAGTCCCTCTCACC+AGG | 0.572281 | tig0028672:+8714 | Msa1438910:CDS |
| CAAATGAAGCAAGTTCAAGA+TGG | 0.575876 | tig0028672:+10313 | Msa1438910:three_prime_UTR |
| AAATGATAGGTGCAGGACCA+AGG | 0.580181 | tig0028672:+10711 | Msa1438910:three_prime_UTR |
| GAGGGACTACTATGACTATG+AGG | 0.581362 | tig0028672:-8706 | None:intergenic |
| GAATCCAATGAAGGTAGGCA+AGG | 0.585447 | tig0028672:-10475 | None:intergenic |
| AAGAGATTGAAGATGAAAGG+AGG | 0.590101 | tig0028672:+10015 | Msa1438910:CDS |
| AGCTGTAGTTCAATCAGTCA+AGG | 0.591551 | tig0028672:+9992 | Msa1438910:CDS |
| AATGATAGGTGCAGGACCAA+GGG | 0.594126 | tig0028672:+10712 | Msa1438910:three_prime_UTR |
| TATGACTATGAGGAGGCTCA+TGG | 0.595092 | tig0028672:-8696 | None:intergenic |
| ATGAGGAGGCTCATGGTGGT+GGG | 0.595906 | tig0028672:-8689 | None:intergenic |
| AAGAAAAGTACCTGGTGAGA+GGG | 0.598007 | tig0028672:-8724 | None:intergenic |
| CAAGAAAAGTACCTGGTGAG+AGG | 0.598348 | tig0028672:-8725 | None:intergenic |
| GGAAATCAAGTGAAATTGGA+AGG | 0.599065 | tig0028672:+10620 | Msa1438910:three_prime_UTR |
| TCTTCTTGTTGACACACACA+CGG | 0.600674 | tig0028672:+8366 | None:intergenic |
| TTCTATTATGCATAATAGTG+CGG | 0.602383 | tig0028672:+10213 | Msa1438910:three_prime_UTR |
| TTTGCCGAGGAAGCTTCCGT+TGG | 0.615175 | tig0028672:+10535 | Msa1438910:three_prime_UTR |
| GAAAGGAATCCAATGAAGGT+AGG | 0.616541 | tig0028672:-10480 | None:intergenic |
| AAGGGAAGAAGGAATAATGG+TGG | 0.618908 | tig0028672:+8489 | Msa1438910:CDS |
| CAAGCATCAGTTGTTCAGCA+CGG | 0.633336 | tig0028672:+9360 | Msa1438910:CDS |
| GTCATCCAGAGAGTTAGTCA+AGG | 0.646355 | tig0028672:+9761 | Msa1438910:CDS |
| TGAGCTAAGGCAATTAGAAG+GGG | 0.649817 | tig0028672:-9424 | None:intergenic |
| ATATCCTGAGAGTATTTGCA+GGG | 0.650780 | tig0028672:+10804 | Msa1438910:three_prime_UTR |
| AATCCAATGAAGGTAGGCAA+GGG | 0.653423 | tig0028672:-10474 | None:intergenic |
| GAAGTGAAGTCTTTGTTACG+TGG | 0.664790 | tig0028672:+10089 | Msa1438910:CDS |
| TCAACAAGTCTCCAAGTGGG+TGG | 0.665483 | tig0028672:-8571 | None:intergenic |
| AAAGTCAACAAGTCTCCAAG+TGG | 0.666077 | tig0028672:-8575 | None:intergenic |
| AAGTCAACAAGTCTCCAAGT+GGG | 0.688185 | tig0028672:-8574 | None:intergenic |
| GGACTACTATGACTATGAGG+AGG | 0.700817 | tig0028672:-8703 | None:intergenic |
| GACTATGAGGAGGCTCATGG+TGG | 0.712982 | tig0028672:-8693 | None:intergenic |
| CATCCTGTTCTTCAAGACGC+CGG | 0.714018 | tig0028672:-9797 | None:intergenic |
| TCTACTAACAAATTACCTAG+GGG | 0.744257 | tig0028672:+10922 | Msa1438910:three_prime_UTR |
| GTTTGAACAGAAAAGGACTG+CGG | 0.744270 | tig0028672:+10567 | Msa1438910:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTAATGACATTTT+TGG | + | tig0028672:8771-8790 | Msa1438910:intron | 10.0% |
| !! | AGAATGAAATAAATTTGAAT+AGG | + | tig0028672:9069-9088 | Msa1438910:intron | 15.0% |
| !!! | TCTTTTTGATTAAATTCTAA+GGG | + | tig0028672:11027-11046 | Msa1438910:three_prime_UTR | 15.0% |
| !! | AAACAGAAATTACCAATTAT+AGG | - | tig0028672:8858-8877 | None:intergenic | 20.0% |
| !! | AGTTCTATATATCAATTAAG+AGG | + | tig0028672:8913-8932 | Msa1438910:intron | 20.0% |
| !! | GTTCTATATATCAATTAAGA+GGG | + | tig0028672:8914-8933 | Msa1438910:intron | 20.0% |
| !! | ATTCTTTAACATCAACATTA+GGG | - | tig0028672:9054-9073 | None:intergenic | 20.0% |
| !! | AGTAAAAGACAATACATTTA+TGG | + | tig0028672:10945-10964 | Msa1438910:three_prime_UTR | 20.0% |
| !!! | CTCTTTTTGATTAAATTCTA+AGG | + | tig0028672:11026-11045 | Msa1438910:three_prime_UTR | 20.0% |
| !!! | CTTTTTGATTAAATTCTAAG+GGG | + | tig0028672:11028-11047 | Msa1438910:three_prime_UTR | 20.0% |
| !!! | AATCACATTGTAATTTTACA+TGG | + | tig0028672:11100-11119 | Msa1438910:three_prime_UTR | 20.0% |
| !!! | TCAAAATTTCAAGTTGAAGA+TGG | + | tig0028672:8441-8460 | Msa1438910:exon | 25.0% |
| ! | AGAAAAATGTATGGAGAAAA+GGG | + | tig0028672:8471-8490 | Msa1438910:CDS | 25.0% |
| ! | ATTCTTCTGATGAAAAATCA+AGG | - | tig0028672:9002-9021 | None:intergenic | 25.0% |
| ! | CATTCTTTAACATCAACATT+AGG | - | tig0028672:9055-9074 | None:intergenic | 25.0% |
| ! | AAAGGAAGAACACAATTATA+TGG | - | tig0028672:9162-9181 | None:intergenic | 25.0% |
| ! | AAACATTAATTCCTAAAGTC+AGG | + | tig0028672:9208-9227 | Msa1438910:intron | 25.0% |
| !!! | ATATTTTGAATTTCAACTGC+TGG | + | tig0028672:9280-9299 | Msa1438910:intron | 25.0% |
| ! | TAAACTTCTTGAGATTCAAA+TGG | - | tig0028672:9476-9495 | None:intergenic | 25.0% |
| !! | TGAAGCATTAAAATTGATTG+AGG | + | tig0028672:9573-9592 | Msa1438910:intron | 25.0% |
| !! | AAAAGTGTATGTAAACTAGA+TGG | + | tig0028672:9658-9677 | Msa1438910:intron | 25.0% |
| !! | ACACATTCATCTTTTTATAC+CGG | - | tig0028672:9713-9732 | None:intergenic | 25.0% |
| !!! | TGTGTTATTTTTCGTAAAAC+AGG | + | tig0028672:9728-9747 | Msa1438910:intron | 25.0% |
| ! | AGAAAAGAAAATGAATAAGC+AGG | + | tig0028672:9896-9915 | Msa1438910:CDS | 25.0% |
| !! | AAAAAAAGAAAGGATCCTTT+TGG | + | tig0028672:10135-10154 | Msa1438910:CDS | 25.0% |
| ! | TTCTATTATGCATAATAGTG+CGG | + | tig0028672:10213-10232 | Msa1438910:three_prime_UTR | 25.0% |
| ! | AATTTCCTTGACTTCTTTAA+TGG | - | tig0028672:10452-10471 | None:intergenic | 25.0% |
| !! | AATCAAAAAGAGCTTTTACT+AGG | - | tig0028672:11018-11037 | None:intergenic | 25.0% |
| ! | ATGTGATTCTATTCTACAAA+AGG | - | tig0028672:11088-11107 | None:intergenic | 25.0% |
| !! | TGTAATTTTACATGGTTAGA+TGG | + | tig0028672:11108-11127 | Msa1438910:three_prime_UTR | 25.0% |
| GGAAAGAAGAGAAAAATGTA+TGG | + | tig0028672:8462-8481 | Msa1438910:CDS | 30.0% | |
| GAGAAAAATGTATGGAGAAA+AGG | + | tig0028672:8470-8489 | Msa1438910:CDS | 30.0% | |
| !! | TACAAAACAAGAAAAGTACC+TGG | - | tig0028672:8735-8754 | None:intergenic | 30.0% |
| ! | TGTTTTCAGATGCCTATAAT+TGG | + | tig0028672:8843-8862 | Msa1438910:intron | 30.0% |
| !! | TCTGTTTCAGCTTTAAAAGT+TGG | + | tig0028672:8871-8890 | Msa1438910:intron | 30.0% |
| TAGGGATAGTTAATTCGAAA+AGG | - | tig0028672:9036-9055 | None:intergenic | 30.0% | |
| GAACACAATTATATGGACAT+TGG | - | tig0028672:9155-9174 | None:intergenic | 30.0% | |
| AGTCTTTCAGCTATCAATAA+AGG | - | tig0028672:9180-9199 | None:intergenic | 30.0% | |
| TCAAACATAATCCTGACTTT+AGG | - | tig0028672:9222-9241 | None:intergenic | 30.0% | |
| TTCATTAAAAATGCCTCAGA+AGG | - | tig0028672:9631-9650 | None:intergenic | 30.0% | |
| !! | TCTGAGGCATTTTTAATGAA+TGG | + | tig0028672:9631-9650 | Msa1438910:intron | 30.0% |
| ! | TCTTTTTATACCGGATGAAA+GGG | - | tig0028672:9704-9723 | None:intergenic | 30.0% |
| ! | ATCTTTTTATACCGGATGAA+AGG | - | tig0028672:9705-9724 | None:intergenic | 30.0% |
| GAAAATGAATAAGCAGGAAA+TGG | + | tig0028672:9902-9921 | Msa1438910:CDS | 30.0% | |
| CTCGAAAGAGAAAAAAAGAA+AGG | + | tig0028672:10125-10144 | Msa1438910:CDS | 30.0% | |
| TTCATAATCTCTTACTCCTT+TGG | - | tig0028672:10182-10201 | None:intergenic | 30.0% | |
| ATTGGATTCCTTTCAACTAA+AGG | + | tig0028672:10489-10508 | Msa1438910:three_prime_UTR | 30.0% | |
| TATTGTCTCCTTTAGTTGAA+AGG | - | tig0028672:10500-10519 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTCGACTGTTTAAC+AGG | - | tig0028672:10871-10890 | None:intergenic | 30.0% |
| AGTCTACTAACAAATTACCT+AGG | + | tig0028672:10920-10939 | Msa1438910:three_prime_UTR | 30.0% | |
| GTCTACTAACAAATTACCTA+GGG | + | tig0028672:10921-10940 | Msa1438910:three_prime_UTR | 30.0% | |
| TCTACTAACAAATTACCTAG+GGG | + | tig0028672:10922-10941 | Msa1438910:three_prime_UTR | 30.0% | |
| GAAAAGGGAAGAAGGAATAA+TGG | + | tig0028672:8486-8505 | Msa1438910:CDS | 35.0% | |
| ! | GGTGGAAAAGTTGAAACTTT+TGG | + | tig0028672:8507-8526 | Msa1438910:CDS | 35.0% |
| !! | TTGAAACTTTTGGAGAAGAG+AGG | + | tig0028672:8517-8536 | Msa1438910:CDS | 35.0% |
| ! | AACTCTTGTTGATGAGAAGA+AGG | - | tig0028672:8601-8620 | None:intergenic | 35.0% |
| AAATCTCTGTGCTAAACTCT+GGG | + | tig0028672:8657-8676 | Msa1438910:CDS | 35.0% | |
| !! | GCTTTAAAAGTTGGTGACTT+TGG | + | tig0028672:8880-8899 | Msa1438910:intron | 35.0% |
| !! | AAAAGTTGGTGACTTTGGTT+TGG | + | tig0028672:8885-8904 | Msa1438910:intron | 35.0% |
| ATCAGTCGACAGAAATTGTT+CGG | + | tig0028672:9386-9405 | Msa1438910:CDS | 35.0% | |
| TTGAGCTAAGGCAATTAGAA+GGG | - | tig0028672:9428-9447 | None:intergenic | 35.0% | |
| ATTGAGCTAAGGCAATTAGA+AGG | - | tig0028672:9429-9448 | None:intergenic | 35.0% | |
| TTCTAATTGCCTTAGCTCAA+TGG | + | tig0028672:9428-9447 | Msa1438910:CDS | 35.0% | |
| TACTTACTTCCATTGAGCTA+AGG | - | tig0028672:9440-9459 | None:intergenic | 35.0% | |
| ATTGAGGAAAATCTCCATGA+GGG | + | tig0028672:9589-9608 | Msa1438910:intron | 35.0% | |
| ! | GATACTTTTACCCTTTCATC+CGG | + | tig0028672:9691-9710 | Msa1438910:intron | 35.0% |
| ! | AATAGTGAAAGCTCTGATAG+TGG | + | tig0028672:9833-9852 | Msa1438910:CDS | 35.0% |
| ACTAGATCTTTCTCAAACAC+AGG | + | tig0028672:9857-9876 | Msa1438910:CDS | 35.0% | |
| AGGAAGAGATTGAAGATGAA+AGG | + | tig0028672:10012-10031 | Msa1438910:CDS | 35.0% | |
| AAGAGATTGAAGATGAAAGG+AGG | + | tig0028672:10015-10034 | Msa1438910:CDS | 35.0% | |
| CATCACACAAATTCTCCAAA+AGG | - | tig0028672:10153-10172 | None:intergenic | 35.0% | |
| ! | TTGTGTGATGATTTTGCCAA+AGG | + | tig0028672:10163-10182 | Msa1438910:CDS | 35.0% |
| TATGCATAATAGTGCGGATA+AGG | + | tig0028672:10219-10238 | Msa1438910:three_prime_UTR | 35.0% | |
| ! | TTAATGGTGATAGCCTTGAT+AGG | + | tig0028672:10248-10267 | Msa1438910:three_prime_UTR | 35.0% |
| ! | TGTGAAGTATTAGCCTATCA+AGG | - | tig0028672:10264-10283 | None:intergenic | 35.0% |
| GCTAATACTTCACATTTCAG+AGG | + | tig0028672:10270-10289 | Msa1438910:three_prime_UTR | 35.0% | |
| CAAATGAAGCAAGTTCAAGA+TGG | + | tig0028672:10313-10332 | Msa1438910:three_prime_UTR | 35.0% | |
| AAGCAAGTTCAAGATGGTAT+TGG | + | tig0028672:10319-10338 | Msa1438910:three_prime_UTR | 35.0% | |
| CAACTATTGAATGTGTCTCT+AGG | - | tig0028672:10354-10373 | None:intergenic | 35.0% | |
| TCCTTGACTTCTTTAATGGA+GGG | - | tig0028672:10448-10467 | None:intergenic | 35.0% | |
| TTCCTTGACTTCTTTAATGG+AGG | - | tig0028672:10449-10468 | None:intergenic | 35.0% | |
| AGTTGAAAGGAATCCAATGA+AGG | - | tig0028672:10487-10506 | None:intergenic | 35.0% | |
| !! | TTCAAACTTGTTGGTACCAA+CGG | - | tig0028672:10554-10573 | None:intergenic | 35.0% |
| ! | CCTTTTCTGTTCAAACTTGT+TGG | - | tig0028672:10563-10582 | None:intergenic | 35.0% |
| CCAACAAGTTTGAACAGAAA+AGG | + | tig0028672:10560-10579 | Msa1438910:three_prime_UTR | 35.0% | |
| ! | ACTTAACAAGTGCTTTGTTG+AGG | + | tig0028672:10597-10616 | Msa1438910:three_prime_UTR | 35.0% |
| ! | CTTAACAAGTGCTTTGTTGA+GGG | + | tig0028672:10598-10617 | Msa1438910:three_prime_UTR | 35.0% |
| ! | TTAACAAGTGCTTTGTTGAG+GGG | + | tig0028672:10599-10618 | Msa1438910:three_prime_UTR | 35.0% |
| GGAAATCAAGTGAAATTGGA+AGG | + | tig0028672:10620-10639 | Msa1438910:three_prime_UTR | 35.0% | |
| ! | TCACACAAAGTTGATTCTCT+AGG | - | tig0028672:10670-10689 | None:intergenic | 35.0% |
| !!! | ATTTTCTGGTGGACTTTGTA+CGG | - | tig0028672:10695-10714 | None:intergenic | 35.0% |
| AAAGTCCACCAGAAAATGAT+AGG | + | tig0028672:10698-10717 | Msa1438910:three_prime_UTR | 35.0% | |
| GTGACATGAATTAATTCCCT+TGG | - | tig0028672:10731-10750 | None:intergenic | 35.0% | |
| TGTTTCCAACTAACTGTTCA+AGG | - | tig0028672:10756-10775 | None:intergenic | 35.0% | |
| AACAGTTCTTTGTCATCAGA+AGG | + | tig0028672:10772-10791 | Msa1438910:three_prime_UTR | 35.0% | |
| TTTGTCATCAGAAGGTGATA+AGG | + | tig0028672:10780-10799 | Msa1438910:three_prime_UTR | 35.0% | |
| !! | TATATCCTGAGAGTATTTGC+AGG | + | tig0028672:10803-10822 | Msa1438910:three_prime_UTR | 35.0% |
| !! | ATATCCTGAGAGTATTTGCA+GGG | + | tig0028672:10804-10823 | Msa1438910:three_prime_UTR | 35.0% |
| CATTCTGCAGTTACAGTTAA+GGG | + | tig0028672:10841-10860 | Msa1438910:three_prime_UTR | 35.0% | |
| AGACTGAGACATGTTGAAAT+CGG | - | tig0028672:10905-10924 | None:intergenic | 35.0% | |
| TGTATGGAGAAAAGGGAAGA+AGG | + | tig0028672:8478-8497 | Msa1438910:CDS | 40.0% | |
| AAGGGAAGAAGGAATAATGG+TGG | + | tig0028672:8489-8508 | Msa1438910:CDS | 40.0% | |
| !! | AAACTTTTGGAGAAGAGAGG+AGG | + | tig0028672:8520-8539 | Msa1438910:CDS | 40.0% |
| AAGTCAACAAGTCTCCAAGT+GGG | - | tig0028672:8577-8596 | None:intergenic | 40.0% | |
| AAAGTCAACAAGTCTCCAAG+TGG | - | tig0028672:8578-8597 | None:intergenic | 40.0% | |
| !!! | GCAGAGAGTGTTTTTGAAGT+GGG | - | tig0028672:8634-8653 | None:intergenic | 40.0% |
| !!! | TGCAGAGAGTGTTTTTGAAG+TGG | - | tig0028672:8635-8654 | None:intergenic | 40.0% |
| GAAATCTCTGTGCTAAACTC+TGG | + | tig0028672:8656-8675 | Msa1438910:CDS | 40.0% | |
| !! | AAGAAAAGTACCTGGTGAGA+GGG | - | tig0028672:8727-8746 | None:intergenic | 40.0% |
| TGAGCTAAGGCAATTAGAAG+GGG | - | tig0028672:9427-9446 | None:intergenic | 40.0% | |
| GATTGAGGAAAATCTCCATG+AGG | + | tig0028672:9588-9607 | Msa1438910:intron | 40.0% | |
| AGCTGTAGTTCAATCAGTCA+AGG | + | tig0028672:9992-10011 | Msa1438910:CDS | 40.0% | |
| GAAGTGAAGTCTTTGTTACG+TGG | + | tig0028672:10089-10108 | Msa1438910:CDS | 40.0% | |
| TACTTCACATTTCAGAGGCT+TGG | + | tig0028672:10275-10294 | Msa1438910:three_prime_UTR | 40.0% | |
| CCTTGACTTCTTTAATGGAG+GGG | - | tig0028672:10447-10466 | None:intergenic | 40.0% | |
| AATCCAATGAAGGTAGGCAA+GGG | - | tig0028672:10477-10496 | None:intergenic | 40.0% | |
| GAAAGGAATCCAATGAAGGT+AGG | - | tig0028672:10483-10502 | None:intergenic | 40.0% | |
| ! | TTCACCTCATAATTTTGCCG+AGG | + | tig0028672:10522-10541 | Msa1438910:three_prime_UTR | 40.0% |
| GTTTGAACAGAAAAGGACTG+CGG | + | tig0028672:10567-10586 | Msa1438910:three_prime_UTR | 40.0% | |
| GAGGGGAAATCAAGTGAAAT+TGG | + | tig0028672:10616-10635 | Msa1438910:three_prime_UTR | 40.0% | |
| CCTTAACTGTAACTGCAGAA+TGG | - | tig0028672:10843-10862 | None:intergenic | 40.0% | |
| CCATTCTGCAGTTACAGTTA+AGG | + | tig0028672:10840-10859 | Msa1438910:three_prime_UTR | 40.0% | |
| GACTGAGACATGTTGAAATC+GGG | - | tig0028672:10904-10923 | None:intergenic | 40.0% | |
| ! | GTATTGTCTTTTACTCCCCT+AGG | - | tig0028672:10940-10959 | None:intergenic | 40.0% |
| TATGACTATGAGGAGGCTCA+TGG | - | tig0028672:8699-8718 | None:intergenic | 45.0% | |
| GGACTACTATGACTATGAGG+AGG | - | tig0028672:8706-8725 | None:intergenic | 45.0% | |
| GAGGGACTACTATGACTATG+AGG | - | tig0028672:8709-8728 | None:intergenic | 45.0% | |
| !! | CAAGAAAAGTACCTGGTGAG+AGG | - | tig0028672:8728-8747 | None:intergenic | 45.0% |
| GTACGTCAGCTCTCTTCATA+AGG | - | tig0028672:9122-9141 | None:intergenic | 45.0% | |
| CAAGCATCAGTTGTTCAGCA+CGG | + | tig0028672:9360-9379 | Msa1438910:CDS | 45.0% | |
| CATCGACGATAAATCCCTCA+TGG | - | tig0028672:9606-9625 | None:intergenic | 45.0% | |
| TATCGTCGATGATCCTTCTG+AGG | + | tig0028672:9615-9634 | Msa1438910:intron | 45.0% | |
| GTCATCCAGAGAGTTAGTCA+AGG | + | tig0028672:9761-9780 | Msa1438910:CDS | 45.0% | |
| GAGAACCTTGACTAACTCTC+TGG | - | tig0028672:9769-9788 | None:intergenic | 45.0% | |
| TCAAGGTTCTCAAACGTAGC+CGG | + | tig0028672:9778-9797 | Msa1438910:CDS | 45.0% | |
| AGAAAGCCTGTATCAGAAGC+TGG | + | tig0028672:10052-10071 | Msa1438910:CDS | 45.0% | |
| GCGGATAAGGATCGCATTAA+TGG | + | tig0028672:10232-10251 | Msa1438910:three_prime_UTR | 45.0% | |
| CCCCTCCATTAAAGAAGTCA+AGG | + | tig0028672:10444-10463 | Msa1438910:three_prime_UTR | 45.0% | |
| GAATCCAATGAAGGTAGGCA+AGG | - | tig0028672:10478-10497 | None:intergenic | 45.0% | |
| GCTTCCTCGGCAAAATTATG+AGG | - | tig0028672:10529-10548 | None:intergenic | 45.0% | |
| ! | CTGCACCTATCATTTTCTGG+TGG | - | tig0028672:10706-10725 | None:intergenic | 45.0% |
| CACCAGAAAATGATAGGTGC+AGG | + | tig0028672:10704-10723 | Msa1438910:three_prime_UTR | 45.0% | |
| ! | GTCCTGCACCTATCATTTTC+TGG | - | tig0028672:10709-10728 | None:intergenic | 45.0% |
| AAATGATAGGTGCAGGACCA+AGG | + | tig0028672:10711-10730 | Msa1438910:three_prime_UTR | 45.0% | |
| AATGATAGGTGCAGGACCAA+GGG | + | tig0028672:10712-10731 | Msa1438910:three_prime_UTR | 45.0% | |
| CACAGCCTTGAACAGTTAGT+TGG | + | tig0028672:10748-10767 | Msa1438910:three_prime_UTR | 45.0% | |
| TCTTCCCTGCAAATACTCTC+AGG | - | tig0028672:10811-10830 | None:intergenic | 45.0% | |
| TGGCAAAACTGCTTGAAGCA+AGG | + | tig0028672:10965-10984 | Msa1438910:three_prime_UTR | 45.0% | |
| ACTGCTTGAAGCAAGGTTAG+AGG | + | tig0028672:10972-10991 | Msa1438910:three_prime_UTR | 45.0% | |
| !! | AAAAAAAAATTAATTGAAAA+TGG | - | tig0028672:8759-8778 | None:intergenic | 5.0% |
| TTGGAGAAGAGAGGAGGAAG+AGG | + | tig0028672:8526-8545 | Msa1438910:CDS | 50.0% | |
| AGAAGAGAGGAGGAAGAGGA+AGG | + | tig0028672:8530-8549 | Msa1438910:CDS | 50.0% | |
| TCAACAAGTCTCCAAGTGGG+TGG | - | tig0028672:8574-8593 | None:intergenic | 50.0% | |
| TCATAGTAGTCCCTCTCACC+AGG | + | tig0028672:8714-8733 | Msa1438910:CDS | 50.0% | |
| ! | AGCAGATGCTGGCTGTATTG+CGG | - | tig0028672:9319-9338 | None:intergenic | 50.0% |
| CATCCTGTTCTTCAAGACGC+CGG | - | tig0028672:9800-9819 | None:intergenic | 50.0% | |
| CACTAGCCAGCTTCTGATAC+AGG | - | tig0028672:10061-10080 | None:intergenic | 50.0% | |
| TCACCCTTGCCTACCTTCAT+TGG | + | tig0028672:10471-10490 | Msa1438910:three_prime_UTR | 50.0% | |
| GTTCAACACCACCACCCACT+TGG | + | tig0028672:8560-8579 | Msa1438910:CDS | 55.0% | |
| ACAAGTCTCCAAGTGGGTGG+TGG | - | tig0028672:8571-8590 | None:intergenic | 55.0% | |
| ATGAGGAGGCTCATGGTGGT+GGG | - | tig0028672:8692-8711 | None:intergenic | 55.0% | |
| TATGAGGAGGCTCATGGTGG+TGG | - | tig0028672:8693-8712 | None:intergenic | 55.0% | |
| GACTATGAGGAGGCTCATGG+TGG | - | tig0028672:8696-8715 | None:intergenic | 55.0% | |
| CTCGAGTCTCTAGCAGATGC+TGG | - | tig0028672:9330-9349 | None:intergenic | 55.0% | |
| TAGCCGGCGTCTTGAAGAAC+AGG | + | tig0028672:9794-9813 | Msa1438910:CDS | 55.0% | |
| TTTGCCGAGGAAGCTTCCGT+TGG | + | tig0028672:10535-10554 | Msa1438910:three_prime_UTR | 55.0% | |
| GGTACCAACGGAAGCTTCCT+CGG | - | tig0028672:10542-10561 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028672 | gene | 8381 | 11143 | 8381 | ID=Msa1438910;Name=Msa1438910 |
| tig0028672 | mRNA | 8381 | 11143 | 8381 | ID=Msa1438910-mRNA-1;Parent=Msa1438910;Name=Msa1438910-mRNA-1;_AED=0.19;_eAED=0.19;_QI=79|1|1|1|1|1|3|953|280 |
| tig0028672 | exon | 8381 | 8735 | 8381 | ID=Msa1438910-mRNA-1:exon:11488;Parent=Msa1438910-mRNA-1 |
| tig0028672 | exon | 9327 | 9452 | 9327 | ID=Msa1438910-mRNA-1:exon:11489;Parent=Msa1438910-mRNA-1 |
| tig0028672 | exon | 9750 | 11143 | 9750 | ID=Msa1438910-mRNA-1:exon:11490;Parent=Msa1438910-mRNA-1 |
| tig0028672 | five_prime_UTR | 8381 | 8459 | 8381 | ID=Msa1438910-mRNA-1:five_prime_utr;Parent=Msa1438910-mRNA-1 |
| tig0028672 | CDS | 8460 | 8735 | 8460 | ID=Msa1438910-mRNA-1:cds;Parent=Msa1438910-mRNA-1 |
| tig0028672 | CDS | 9327 | 9452 | 9327 | ID=Msa1438910-mRNA-1:cds;Parent=Msa1438910-mRNA-1 |
| tig0028672 | CDS | 9750 | 10190 | 9750 | ID=Msa1438910-mRNA-1:cds;Parent=Msa1438910-mRNA-1 |
| tig0028672 | three_prime_UTR | 10191 | 11143 | 10191 | ID=Msa1438910-mRNA-1:three_prime_utr;Parent=Msa1438910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
