Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151850 | XP_003589619.1 | 94.314 | 299 | 17 | 0 | 18 | 316 | 18 | 316 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151850 | sp|Q9M2E2|SDR1_ARATH | 39.465 | 299 | 146 | 8 | 42 | 316 | 9 | 296 | 1.19e-58 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151850 | G7I950 | 94.314 | 299 | 17 | 0 | 18 | 316 | 18 | 316 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0151850 | 0.817344 | 3.461636e-52 | -8.615850e-47 |
| Msa0104290 | Msa0151850 | 0.805317 | 1.415485e-49 | -8.615850e-47 |
| Msa0115270 | Msa0151850 | 0.826156 | 3.166304e-54 | -8.615850e-47 |
| Msa0151850 | Msa0157290 | 0.818090 | 2.350549e-52 | -8.615850e-47 |
| Msa0151850 | Msa0165220 | 0.803483 | 3.411141e-49 | -8.615850e-47 |
| Msa0151850 | Msa0215320 | -0.800395 | 1.470353e-48 | -8.615850e-47 |
| Msa0151850 | Msa0220740 | 0.803585 | 3.249170e-49 | -8.615850e-47 |
| Msa0151850 | Msa0294560 | -0.804570 | 2.027913e-49 | -8.615850e-47 |
| Msa0151850 | Msa0344830 | 0.810816 | 9.549110e-51 | -8.615850e-47 |
| Msa0151850 | Msa0347360 | 0.804009 | 2.653057e-49 | -8.615850e-47 |
| Msa0151850 | Msa0421780 | -0.806751 | 7.064076e-50 | -8.615850e-47 |
| Msa0151850 | Msa0449830 | 0.802856 | 4.600666e-49 | -8.615850e-47 |
| Msa0151850 | Msa0466390 | 0.817448 | 3.280713e-52 | -8.615850e-47 |
| Msa0151850 | Msa0529040 | 0.802543 | 5.336942e-49 | -8.615850e-47 |
| Msa0151850 | Msa0545700 | 0.812197 | 4.784723e-51 | -8.615850e-47 |
| Msa0151850 | Msa0562440 | 0.844791 | 6.074877e-59 | -8.615850e-47 |
| Msa0151850 | Msa0638070 | 0.803411 | 3.531401e-49 | -8.615850e-47 |
| Msa0151850 | Msa0638280 | 0.805103 | 1.568585e-49 | -8.615850e-47 |
| Msa0151850 | Msa0638320 | 0.803117 | 4.062639e-49 | -8.615850e-47 |
| Msa0151850 | Msa0663240 | 0.829760 | 4.298105e-55 | -8.615850e-47 |
| Msa0151850 | Msa0688480 | 0.827251 | 1.734819e-54 | -8.615850e-47 |
| Msa0151850 | Msa0689010 | 0.804733 | 1.874950e-49 | -8.615850e-47 |
| Msa0151850 | Msa0743720 | 0.822532 | 2.252228e-53 | -8.615850e-47 |
| Msa0151850 | Msa0824680 | 0.808311 | 3.296392e-50 | -8.615850e-47 |
| Msa0151850 | Msa0850960 | 0.826941 | 2.057198e-54 | -8.615850e-47 |
| Msa0151850 | Msa0880140 | 0.813442 | 2.554169e-51 | -8.615850e-47 |
| Msa0151850 | Msa0925250 | 0.810751 | 9.864286e-51 | -8.615850e-47 |
| Msa0151850 | Msa0980090 | 0.803851 | 2.862083e-49 | -8.615850e-47 |
| Msa0151850 | Msa1014540 | 0.803541 | 3.319098e-49 | -8.615850e-47 |
| Msa0151850 | Msa1046300 | 0.802221 | 6.217670e-49 | -8.615850e-47 |
| Msa0151850 | Msa1156020 | 0.801600 | 8.342566e-49 | -8.615850e-47 |
| Msa0151850 | Msa1186060 | 0.816465 | 5.453139e-52 | -8.615850e-47 |
| Msa0151850 | Msa1233890 | 0.822074 | 2.877540e-53 | -8.615850e-47 |
| Msa0151850 | Msa1238930 | 0.801127 | 1.042449e-48 | -8.615850e-47 |
| Msa0151850 | Msa1244250 | 0.802358 | 5.828208e-49 | -8.615850e-47 |
| Msa0151850 | Msa1253020 | 0.811495 | 6.805091e-51 | -8.615850e-47 |
| Msa0151850 | Msa1275360 | 0.825948 | 3.548672e-54 | -8.615850e-47 |
| Msa0151850 | Msa1299300 | -0.801091 | 1.060300e-48 | -8.615850e-47 |
| Msa0151850 | Msa1308380 | 0.800678 | 1.287544e-48 | -8.615850e-47 |
| Msa0151850 | Msa1345220 | 0.800942 | 1.137215e-48 | -8.615850e-47 |
| Msa0151850 | Msa1348950 | 0.824804 | 6.619239e-54 | -8.615850e-47 |
| Msa0151850 | Msa1351620 | 0.801664 | 8.091971e-49 | -8.615850e-47 |
| Msa0151850 | Msa1362880 | 0.819870 | 9.256127e-53 | -8.615850e-47 |
| Msa0151850 | Msa1403480 | 0.812494 | 4.122396e-51 | -8.615850e-47 |
| Msa0151850 | Msa1411020 | 0.825929 | 3.585833e-54 | -8.615850e-47 |
| Msa0151850 | Msa1420490 | 0.812978 | 3.229178e-51 | -8.615850e-47 |
| Msa0151850 | Msa1423390 | 0.812850 | 3.444214e-51 | -8.615850e-47 |
| Msa0151850 | Msa1424290 | 0.816918 | 4.315427e-52 | -8.615850e-47 |
| Msa0151850 | Msa1434350 | 0.822515 | 2.272780e-53 | -8.615850e-47 |
| Msa0151850 | Msa1439320 | 0.822883 | 1.866538e-53 | -8.615850e-47 |
| Msa0151850 | Msa1440370 | 0.809179 | 2.150269e-50 | -8.615850e-47 |
| Msa0151850 | Msa1440810 | 0.810520 | 1.106553e-50 | -8.615850e-47 |
| Msa0151850 | Msa1443060 | 0.804266 | 2.346012e-49 | -8.615850e-47 |
| Msa0151850 | Msa1455490 | 0.803026 | 4.242768e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151850 | MtrunA17_Chr1g0160511 | 94.314 | 299 | 17 | 0 | 18 | 316 | 18 | 316 | 0.0 | 592 |
| Msa0151850 | MtrunA17_Chr3g0131521 | 76.948 | 308 | 71 | 0 | 9 | 316 | 4 | 311 | 0.0 | 510 |
| Msa0151850 | MtrunA17_Chr8g0385581 | 72.937 | 303 | 79 | 1 | 17 | 316 | 14 | 316 | 1.33e-168 | 471 |
| Msa0151850 | MtrunA17_Chr8g0349671 | 40.532 | 301 | 141 | 9 | 42 | 316 | 9 | 297 | 9.65e-63 | 201 |
| Msa0151850 | MtrunA17_Chr8g0349641 | 40.594 | 303 | 143 | 7 | 40 | 316 | 7 | 298 | 9.83e-63 | 201 |
| Msa0151850 | MtrunA17_Chr7g0247011 | 40.484 | 289 | 147 | 6 | 42 | 316 | 9 | 286 | 1.17e-61 | 197 |
| Msa0151850 | MtrunA17_Chr8g0349801 | 38.305 | 295 | 145 | 5 | 42 | 310 | 9 | 292 | 6.71e-61 | 196 |
| Msa0151850 | MtrunA17_Chr5g0425391 | 39.935 | 308 | 141 | 8 | 37 | 316 | 4 | 295 | 8.32e-61 | 196 |
| Msa0151850 | MtrunA17_Chr8g0349761 | 39.333 | 300 | 144 | 6 | 41 | 314 | 9 | 296 | 2.32e-60 | 194 |
| Msa0151850 | MtrunA17_Chr8g0349811 | 38.047 | 297 | 147 | 5 | 38 | 308 | 5 | 290 | 3.76e-60 | 194 |
| Msa0151850 | MtrunA17_Chr8g0349771 | 38.284 | 303 | 149 | 6 | 39 | 315 | 6 | 296 | 5.08e-60 | 194 |
| Msa0151850 | MtrunA17_Chr8g0349851 | 37.705 | 305 | 152 | 7 | 39 | 316 | 6 | 299 | 1.52e-59 | 192 |
| Msa0151850 | MtrunA17_Chr8g0349741 | 42.123 | 292 | 139 | 8 | 37 | 311 | 4 | 282 | 9.16e-59 | 190 |
| Msa0151850 | MtrunA17_Chr8g0349781 | 36.066 | 305 | 158 | 5 | 38 | 316 | 5 | 298 | 3.48e-58 | 189 |
| Msa0151850 | MtrunA17_Chr8g0349701 | 36.149 | 296 | 157 | 5 | 42 | 316 | 9 | 293 | 1.96e-57 | 187 |
| Msa0151850 | MtrunA17_Chr8g0349721 | 36.149 | 296 | 157 | 5 | 42 | 316 | 9 | 293 | 3.29e-57 | 186 |
| Msa0151850 | MtrunA17_Chr8g0349831 | 37.086 | 302 | 152 | 6 | 42 | 316 | 10 | 300 | 8.23e-57 | 186 |
| Msa0151850 | MtrunA17_Chr3g0118511 | 37.500 | 296 | 146 | 5 | 42 | 308 | 5 | 290 | 5.21e-56 | 183 |
| Msa0151850 | MtrunA17_Chr7g0247041 | 37.248 | 298 | 153 | 6 | 42 | 316 | 8 | 294 | 2.27e-54 | 179 |
| Msa0151850 | MtrunA17_Chr8g0349751 | 39.116 | 294 | 141 | 8 | 42 | 308 | 59 | 341 | 9.38e-54 | 179 |
| Msa0151850 | MtrunA17_Chr7g0247031 | 38.276 | 290 | 153 | 7 | 42 | 316 | 10 | 288 | 1.20e-53 | 177 |
| Msa0151850 | MtrunA17_Chr7g0267881 | 44.240 | 217 | 104 | 6 | 42 | 251 | 11 | 217 | 1.18e-49 | 165 |
| Msa0151850 | MtrunA17_Chr8g0349651 | 37.676 | 284 | 137 | 9 | 61 | 316 | 4 | 275 | 7.42e-47 | 159 |
| Msa0151850 | MtrunA17_Chr4g0045691 | 39.106 | 179 | 98 | 5 | 143 | 316 | 1 | 173 | 3.26e-34 | 123 |
| Msa0151850 | MtrunA17_Chr5g0437701 | 35.606 | 132 | 79 | 1 | 185 | 316 | 3 | 128 | 2.82e-21 | 87.8 |
| Msa0151850 | MtrunA17_Chr4g0045711 | 45.263 | 95 | 45 | 3 | 34 | 121 | 16 | 110 | 1.21e-19 | 83.2 |
| Msa0151850 | MtrunA17_Chr3g0112151 | 34.722 | 144 | 91 | 3 | 34 | 175 | 83 | 225 | 1.40e-12 | 67.4 |
| Msa0151850 | MtrunA17_Chr4g0058731 | 24.567 | 289 | 170 | 10 | 42 | 313 | 51 | 308 | 1.47e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151850 | AT5G51030.1 | 65.806 | 310 | 106 | 0 | 7 | 316 | 5 | 314 | 4.51e-164 | 459 |
| Msa0151850 | AT5G61830.1 | 68.690 | 313 | 95 | 2 | 7 | 316 | 4 | 316 | 1.46e-162 | 456 |
| Msa0151850 | AT5G61830.2 | 68.690 | 313 | 95 | 2 | 7 | 316 | 4 | 316 | 1.46e-162 | 456 |
| Msa0151850 | AT3G59710.3 | 46.290 | 283 | 141 | 5 | 28 | 308 | 7 | 280 | 5.94e-79 | 242 |
| Msa0151850 | AT3G59710.2 | 46.429 | 280 | 139 | 5 | 31 | 308 | 39 | 309 | 1.40e-77 | 240 |
| Msa0151850 | AT3G59710.1 | 45.745 | 282 | 142 | 5 | 29 | 308 | 18 | 290 | 2.43e-76 | 236 |
| Msa0151850 | AT3G61220.1 | 39.465 | 299 | 146 | 8 | 42 | 316 | 9 | 296 | 1.21e-59 | 193 |
| Msa0151850 | AT3G61220.2 | 39.465 | 299 | 146 | 8 | 42 | 316 | 16 | 303 | 2.18e-59 | 192 |
| Msa0151850 | AT3G61220.3 | 39.465 | 299 | 146 | 8 | 42 | 316 | 40 | 327 | 4.35e-59 | 192 |
| Msa0151850 | AT2G24190.1 | 38.255 | 298 | 148 | 8 | 42 | 315 | 9 | 294 | 4.68e-57 | 186 |
| Msa0151850 | AT2G24190.2 | 38.255 | 298 | 148 | 8 | 42 | 315 | 14 | 299 | 5.33e-57 | 186 |
| Msa0151850 | AT1G01800.1 | 35.880 | 301 | 157 | 7 | 41 | 316 | 6 | 295 | 3.22e-54 | 179 |
| Msa0151850 | AT1G01800.2 | 33.880 | 183 | 110 | 3 | 134 | 316 | 89 | 260 | 2.73e-26 | 105 |
| Msa0151850 | AT5G50130.1 | 25.566 | 309 | 171 | 13 | 30 | 315 | 27 | 299 | 1.11e-13 | 71.2 |
| Msa0151850 | AT5G50130.9 | 30.000 | 220 | 128 | 9 | 30 | 226 | 27 | 243 | 3.41e-13 | 68.9 |
| Msa0151850 | AT5G50130.3 | 29.646 | 226 | 122 | 10 | 30 | 226 | 27 | 244 | 3.73e-13 | 68.9 |
| Msa0151850 | AT5G50130.4 | 34.416 | 154 | 90 | 7 | 30 | 175 | 27 | 177 | 1.04e-12 | 68.2 |
| Msa0151850 | AT5G50130.2 | 34.416 | 154 | 90 | 7 | 30 | 175 | 27 | 177 | 1.09e-12 | 68.2 |
| Msa0151850 | AT1G63380.3 | 31.944 | 144 | 92 | 3 | 38 | 175 | 16 | 159 | 4.52e-12 | 65.9 |
| Msa0151850 | AT1G63380.4 | 31.944 | 144 | 92 | 3 | 38 | 175 | 20 | 163 | 5.19e-12 | 65.9 |
| Msa0151850 | AT1G63380.2 | 31.944 | 144 | 92 | 3 | 38 | 175 | 23 | 166 | 5.48e-12 | 65.9 |
| Msa0151850 | AT1G63380.1 | 31.944 | 144 | 92 | 3 | 38 | 175 | 18 | 161 | 5.50e-12 | 65.5 |
| Msa0151850 | AT1G62610.1 | 31.944 | 144 | 92 | 3 | 38 | 175 | 15 | 158 | 7.06e-12 | 65.1 |
| Msa0151850 | AT1G62610.3 | 31.944 | 144 | 92 | 3 | 38 | 175 | 16 | 159 | 7.12e-12 | 65.1 |
| Msa0151850 | AT1G62610.4 | 31.944 | 144 | 92 | 3 | 38 | 175 | 20 | 163 | 7.45e-12 | 65.1 |
| Msa0151850 | AT1G62610.2 | 31.944 | 144 | 92 | 3 | 38 | 175 | 14 | 157 | 7.76e-12 | 65.1 |
| Msa0151850 | AT5G50130.7 | 26.102 | 295 | 159 | 13 | 44 | 315 | 8 | 266 | 8.34e-12 | 65.5 |
| Msa0151850 | AT3G46170.1 | 31.293 | 147 | 95 | 3 | 38 | 178 | 27 | 173 | 1.97e-11 | 63.9 |
| Msa0151850 | AT3G55290.1 | 31.293 | 147 | 95 | 3 | 38 | 178 | 19 | 165 | 4.10e-11 | 63.2 |
| Msa0151850 | AT3G55290.2 | 31.293 | 147 | 95 | 3 | 38 | 178 | 18 | 164 | 4.19e-11 | 63.2 |
| Msa0151850 | AT3G55310.1 | 31.293 | 147 | 95 | 3 | 38 | 178 | 18 | 164 | 6.15e-11 | 62.4 |
| Msa0151850 | AT4G24050.2 | 29.388 | 245 | 128 | 11 | 42 | 277 | 37 | 245 | 8.18e-11 | 62.0 |
Find 102 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACAATAATTATAATTT+TGG | 0.147765 | 1_4:-14213890 | None:intergenic |
| ACAACGGATGGTTTCATTAA+TGG | 0.171749 | 1_4:-14215574 | None:intergenic |
| TTATGGTGGTTTAGATATTC+TGG | 0.207457 | 1_4:+14214719 | Msa0151850:CDS |
| TACAGCGGCAATAGTGATTC+TGG | 0.215172 | 1_4:+14214121 | Msa0151850:five_prime_UTR |
| TCCGACCACCATTGATAATA+AGG | 0.229858 | 1_4:+14216797 | Msa0151850:three_prime_UTR |
| GTTGCTTCACTGCATATAAA+TGG | 0.234055 | 1_4:+14214144 | Msa0151850:exon |
| ATGCTGGTGCTGAATCAATT+AGG | 0.236783 | 1_4:+14214601 | Msa0151850:CDS |
| TCTGCATGACCAAACAATTA+TGG | 0.255042 | 1_4:+14216607 | Msa0151850:CDS |
| GTTATCGAAACAAATTATTA+TGG | 0.280899 | 1_4:+14215523 | Msa0151850:CDS |
| ATAAGCATTAACAGCAAGTT+TGG | 0.293083 | 1_4:-14216429 | None:intergenic |
| GATTATCACTGATAATTATA+TGG | 0.296879 | 1_4:-14216886 | None:intergenic |
| TACCTTTGGTGATCTGAATA+AGG | 0.297830 | 1_4:-14214244 | None:intergenic |
| GGCTGCAACACCATACTTAT+AGG | 0.299373 | 1_4:+14216764 | Msa0151850:three_prime_UTR |
| TAACACCATGGCATTGTTCT+TGG | 0.312898 | 1_4:-14216687 | None:intergenic |
| ACCGGCGGAAACAGAGGAAT+TGG | 0.328442 | 1_4:+14214513 | Msa0151850:CDS |
| GAAACTATTGCTGTGGTTAC+CGG | 0.336947 | 1_4:+14214495 | Msa0151850:CDS |
| TAATGCTTATACAAGGCTTA+TGG | 0.345742 | 1_4:+14216442 | Msa0151850:CDS |
| AAATAAACAAATCAAATTCA+TGG | 0.358429 | 1_4:+14214071 | Msa0151850:five_prime_UTR |
| CAGTGGTTGCAGGAAAATTA+TGG | 0.362541 | 1_4:+14214702 | Msa0151850:CDS |
| CAAAACCTGCCCTATAAGTA+TGG | 0.364894 | 1_4:-14216774 | None:intergenic |
| TGCTGGTGCTGAATCAATTA+GGG | 0.366104 | 1_4:+14214602 | Msa0151850:CDS |
| GAGTAATATCGAGTTTCTTT+CGG | 0.367468 | 1_4:+14216304 | Msa0151850:CDS |
| TATAATTATTGTAGAAATTG+AGG | 0.368457 | 1_4:+14213897 | Msa0151850:five_prime_UTR |
| GAATTGGGTTTGAGATTTGT+AGG | 0.377648 | 1_4:+14214529 | Msa0151850:CDS |
| GTTGAGGAAGGAGCTGATAC+TGG | 0.389307 | 1_4:+14216569 | Msa0151850:CDS |
| CTGCATGACCAAACAATTAT+GGG | 0.389652 | 1_4:+14216608 | Msa0151850:CDS |
| CCACTTTGTTCAGTGGTTGC+AGG | 0.392622 | 1_4:+14214692 | Msa0151850:CDS |
| TTTCCTAACCTTATTATCAA+TGG | 0.399790 | 1_4:-14216805 | None:intergenic |
| GAAGATGGAAGCTGGACATC+AGG | 0.400850 | 1_4:+14216371 | Msa0151850:CDS |
| TGGGTGAAGACGGCTTTAAC+AGG | 0.403091 | 1_4:+14216527 | Msa0151850:CDS |
| AGAACAATGCCATGGTGTTA+TGG | 0.409616 | 1_4:+14216690 | Msa0151850:three_prime_UTR |
| AAGGAGCTGATACTGGAGTA+TGG | 0.430228 | 1_4:+14216576 | Msa0151850:CDS |
| AACCACAGCAATAGTTTCCT+TGG | 0.431162 | 1_4:-14214490 | None:intergenic |
| ACAGCGGCAATAGTGATTCT+GGG | 0.440517 | 1_4:+14214122 | Msa0151850:five_prime_UTR |
| CCGGCGGAAACAGAGGAATT+GGG | 0.461702 | 1_4:+14214514 | Msa0151850:CDS |
| TTAATGAAACCATCCGTTGT+TGG | 0.467745 | 1_4:+14215577 | Msa0151850:CDS |
| CCACTGAACAAAGTGGTTGA+TGG | 0.467844 | 1_4:-14214685 | None:intergenic |
| GCTGGTGTTAATTTCAATCT+CGG | 0.468354 | 1_4:+14215469 | Msa0151850:CDS |
| GCAGGAAGGTGGTTTGGATG+TGG | 0.470123 | 1_4:+14214629 | Msa0151850:CDS |
| AATGGGTAAGGCGGAGAAGA+AGG | 0.474975 | 1_4:+14214162 | Msa0151850:exon |
| TCACGTCTAGGTCGACTAAA+CGG | 0.479378 | 1_4:+14215622 | Msa0151850:CDS |
| TTTCGGAGGAACTGATTGAC+AGG | 0.480683 | 1_4:+14216321 | Msa0151850:CDS |
| CCACCATTGATAATAAGGTT+AGG | 0.481688 | 1_4:+14216802 | Msa0151850:three_prime_UTR |
| TGTAGGCAACTTGCTACTCA+TGG | 0.483655 | 1_4:+14214546 | Msa0151850:CDS |
| ACTGCTGTTAGTTTGCTGCT+AGG | 0.485420 | 1_4:+14216846 | Msa0151850:three_prime_UTR |
| GCTGCAACACCATACTTATA+GGG | 0.498968 | 1_4:+14216765 | Msa0151850:three_prime_UTR |
| TTGCTTCACTGCATATAAAT+GGG | 0.500794 | 1_4:+14214145 | Msa0151850:exon |
| TTAACTGCTATTGCCCGGGT+TGG | 0.500994 | 1_4:+14216507 | Msa0151850:CDS |
| TAACTGCTATTGCCCGGGTT+GGG | 0.501130 | 1_4:+14216508 | Msa0151850:CDS |
| TATTGACGTTAAGTCTAATG+AGG | 0.502700 | 1_4:+14213865 | Msa0151850:five_prime_UTR |
| CTCTGTTGAAAATGCGCGCA+AGG | 0.504384 | 1_4:+14215501 | Msa0151850:CDS |
| AATCACCAATGTAGCCTTGA+GGG | 0.505474 | 1_4:+14216274 | Msa0151850:CDS |
| AAGATGGAAGCTGGACATCA+GGG | 0.508335 | 1_4:+14216372 | Msa0151850:CDS |
| CCCAATTCCTCTGTTTCCGC+CGG | 0.509307 | 1_4:-14214514 | None:intergenic |
| TAATTGTTTGGTCATGCAGA+AGG | 0.520763 | 1_4:-14216604 | None:intergenic |
| TTGTATGTGTTATGGCTTAG+CGG | 0.523393 | 1_4:+14216724 | Msa0151850:three_prime_UTR |
| AACAAGTAGAAGATGGAAGC+TGG | 0.524013 | 1_4:+14216363 | Msa0151850:CDS |
| CCTAACCTTATTATCAATGG+TGG | 0.526178 | 1_4:-14216802 | None:intergenic |
| GAGTAATCAGTATATATTTG+AGG | 0.527703 | 1_4:-14216401 | None:intergenic |
| CCATCAACCACTTTGTTCAG+TGG | 0.531554 | 1_4:+14214685 | Msa0151850:CDS |
| CAACACCATACTTATAGGGC+AGG | 0.531569 | 1_4:+14216769 | Msa0151850:three_prime_UTR |
| TAATGGTAGGTAAACAATGC+TGG | 0.537419 | 1_4:+14215451 | Msa0151850:intron |
| TTGCTGTTAATGCTTATACA+AGG | 0.539788 | 1_4:+14216435 | Msa0151850:CDS |
| TTGCCCGGGTTGGGTGAAGA+CGG | 0.541413 | 1_4:+14216517 | Msa0151850:CDS |
| TACATGTAGGTGGTGGTCCA+AGG | 0.549768 | 1_4:+14214473 | Msa0151850:intron |
| TTTGTTAACTGCTATTGCCC+GGG | 0.552172 | 1_4:+14216503 | Msa0151850:CDS |
| TTGCTCCCTCAAGGCTACAT+TGG | 0.555869 | 1_4:-14216279 | None:intergenic |
| TCACTGCATATAAATGGGTA+AGG | 0.561657 | 1_4:+14214150 | Msa0151850:exon |
| AATAAGGAATAGACCTCAGA+AGG | 0.561888 | 1_4:-14214228 | None:intergenic |
| TTTCTGGCCTTCTGGTCGCT+CGG | 0.565345 | 1_4:-14216477 | None:intergenic |
| CCTGCAACCACTGAACAAAG+TGG | 0.566437 | 1_4:-14214692 | None:intergenic |
| GATGGAAGCTGGACATCAGG+GGG | 0.568512 | 1_4:+14216374 | Msa0151850:CDS |
| AAAGCCGTCTTCACCCAACC+CGG | 0.568919 | 1_4:-14216521 | None:intergenic |
| TTCCTTATTCAGATCACCAA+AGG | 0.577896 | 1_4:+14214242 | Msa0151850:CDS |
| ACATCAAGAGATGCTAATGC+TGG | 0.581456 | 1_4:+14214585 | Msa0151850:CDS |
| AAGCTTTCCGAGCGACCAGA+AGG | 0.585315 | 1_4:+14216470 | Msa0151850:CDS |
| TGCAGGGAACAATACTGTTG+AGG | 0.586655 | 1_4:+14216553 | Msa0151850:CDS |
| TAATATCGAGTTTCTTTCGG+AGG | 0.586814 | 1_4:+14216307 | Msa0151850:CDS |
| AATTGTTTGGTCATGCAGAA+GGG | 0.587655 | 1_4:-14216603 | None:intergenic |
| ACCTTATTATCAATGGTGGT+CGG | 0.588454 | 1_4:-14216798 | None:intergenic |
| GTAAATGTAAGCTCACGTCT+AGG | 0.591413 | 1_4:+14215610 | Msa0151850:CDS |
| ATTACTCAGTTGCTCCCTCA+AGG | 0.595356 | 1_4:-14216288 | None:intergenic |
| GTGGTTACCGGCGGAAACAG+AGG | 0.596236 | 1_4:+14214507 | Msa0151850:CDS |
| TTGAAGAGATAAACCTTCTG+AGG | 0.601219 | 1_4:+14214215 | Msa0151850:CDS |
| ATTCGAGCACCAACAACGGA+TGG | 0.604995 | 1_4:-14215586 | None:intergenic |
| ATTGACGTTAAGTCTAATGA+GGG | 0.609488 | 1_4:+14213866 | Msa0151850:five_prime_UTR |
| GGGAACAATACTGTTGAGGA+AGG | 0.613804 | 1_4:+14216557 | Msa0151850:CDS |
| TACAATTCGAGCACCAACAA+CGG | 0.619020 | 1_4:-14215590 | None:intergenic |
| AGATGGAAGCTGGACATCAG+GGG | 0.625603 | 1_4:+14216373 | Msa0151850:CDS |
| AGCAGCCAAGAACAATGCCA+TGG | 0.632347 | 1_4:+14216682 | Msa0151850:three_prime_UTR |
| GTCCAAGGAAACTATTGCTG+TGG | 0.632968 | 1_4:+14214488 | Msa0151850:CDS |
| TAAGGCGGAGAAGAAGGAGA+AGG | 0.634663 | 1_4:+14214168 | Msa0151850:CDS |
| AAGCCGTCTTCACCCAACCC+GGG | 0.642912 | 1_4:-14216520 | None:intergenic |
| GAATCACCAATGTAGCCTTG+AGG | 0.646638 | 1_4:+14216273 | Msa0151850:CDS |
| TGGTTGCAGGAAAATTATGG+TGG | 0.649893 | 1_4:+14214705 | Msa0151850:CDS |
| CTTATACAAGGCTTATGGCG+AGG | 0.650044 | 1_4:+14216447 | Msa0151850:CDS |
| TAGGTCGACTAAACGGAAGA+CGG | 0.659235 | 1_4:+14215629 | Msa0151850:CDS |
| CTGCATATAAATGGGTAAGG+CGG | 0.662103 | 1_4:+14214153 | Msa0151850:exon |
| ACTATTGCTGTGGTTACCGG+CGG | 0.667145 | 1_4:+14214498 | Msa0151850:CDS |
| TCCGCTATGCCATAACACCA+TGG | 0.672600 | 1_4:-14216699 | None:intergenic |
| GCCATGGTGTTATGGCATAG+CGG | 0.696253 | 1_4:+14216698 | Msa0151850:three_prime_UTR |
| ATGGAAGCTGGACATCAGGG+GGG | 0.712462 | 1_4:+14216375 | Msa0151850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTACAATAATTATAATTT+TGG | - | chr1_4:14213893-14213912 | None:intergenic | 10.0% |
| !! | TATAATTATTGTAGAAATTG+AGG | + | chr1_4:14213897-14213916 | Msa0151850:five_prime_UTR | 15.0% |
| !! | AAATAAACAAATCAAATTCA+TGG | + | chr1_4:14214071-14214090 | Msa0151850:five_prime_UTR | 15.0% |
| !!! | ATTCTATAAACAATTGATTT+TGG | - | chr1_4:14214403-14214422 | None:intergenic | 15.0% |
| !! | AAAAATTATTAGGAAAGATT+TGG | + | chr1_4:14215199-14215218 | Msa0151850:intron | 15.0% |
| !!! | ATTTCACTTTTAAGTGTTTA+TGG | + | chr1_4:14214281-14214300 | Msa0151850:intron | 20.0% |
| !! | TAGTATAATTTCAGTAAACT+GGG | - | chr1_4:14214377-14214396 | None:intergenic | 20.0% |
| !! | ATAGTATAATTTCAGTAAAC+TGG | - | chr1_4:14214378-14214397 | None:intergenic | 20.0% |
| !! | ATCAAAATGGATAAAAATCT+TGG | - | chr1_4:14214795-14214814 | None:intergenic | 20.0% |
| !!! | TTATCCATTTTGATTACTTT+TGG | + | chr1_4:14214801-14214820 | Msa0151850:intron | 20.0% |
| !!! | TCTTTCCTAATAATTTTTCT+AGG | - | chr1_4:14215197-14215216 | None:intergenic | 20.0% |
| !! | CTTCTAACTATTATCTTTAA+TGG | + | chr1_4:14215434-14215453 | Msa0151850:intron | 20.0% |
| !! | TAACTATTATCTTTAATGGT+AGG | + | chr1_4:14215438-14215457 | Msa0151850:intron | 20.0% |
| !! | GTTATCGAAACAAATTATTA+TGG | + | chr1_4:14215523-14215542 | Msa0151850:CDS | 20.0% |
| !!! | GATTACAATTTTTGCAAAAA+TGG | - | chr1_4:14215669-14215688 | None:intergenic | 20.0% |
| !!! | TTATGTCAGATAGAAATTTT+AGG | - | chr1_4:14215955-14215974 | None:intergenic | 20.0% |
| !!! | AGTAACAAAAATTTTAACGT+TGG | - | chr1_4:14216047-14216066 | None:intergenic | 20.0% |
| !!! | AATTGTAGAGTTGATATTAA+TGG | + | chr1_4:14216233-14216252 | Msa0151850:intron | 20.0% |
| !!! | ATTGTAGAGTTGATATTAAT+GGG | + | chr1_4:14216234-14216253 | Msa0151850:intron | 20.0% |
| !! | GATTATCACTGATAATTATA+TGG | - | chr1_4:14216889-14216908 | None:intergenic | 20.0% |
| !!! | AGTGATAATCTAATTCTTTT+AGG | + | chr1_4:14216899-14216918 | Msa0151850:three_prime_UTR | 20.0% |
| ! | CAATCCAAAAGTAATCAAAA+TGG | - | chr1_4:14214808-14214827 | None:intergenic | 25.0% |
| ! | TCTTTCACATTTGATCTAAA+TGG | + | chr1_4:14214892-14214911 | Msa0151850:intron | 25.0% |
| !!! | TGCTTATTTTATTCTCATGT+TGG | - | chr1_4:14214950-14214969 | None:intergenic | 25.0% |
| ! | GAAGACCTAGAAAAATTATT+AGG | + | chr1_4:14215189-14215208 | Msa0151850:intron | 25.0% |
| !!! | AGATGCATTTTTTTACTTTG+AGG | - | chr1_4:14215733-14215752 | None:intergenic | 25.0% |
| !!! | ATTTTAGGTGATAAGGTAAT+AGG | - | chr1_4:14215940-14215959 | None:intergenic | 25.0% |
| !!! | GATAGAAATTTTAGGTGATA+AGG | - | chr1_4:14215947-14215966 | None:intergenic | 25.0% |
| ! | AGTCTGAATTACATATATTG+TGG | + | chr1_4:14216014-14216033 | Msa0151850:intron | 25.0% |
| !! | TTTTTACAACAAGTAGAAGA+TGG | + | chr1_4:14216356-14216375 | Msa0151850:CDS | 25.0% |
| ! | GAGTAATCAGTATATATTTG+AGG | - | chr1_4:14216404-14216423 | None:intergenic | 25.0% |
| !! | AGCAGTTAACAAAAATTTTC+TGG | - | chr1_4:14216496-14216515 | None:intergenic | 25.0% |
| ! | AAAAACTTCCCATAATTGTT+TGG | - | chr1_4:14216619-14216638 | None:intergenic | 25.0% |
| ! | TTTCCTAACCTTATTATCAA+TGG | - | chr1_4:14216808-14216827 | None:intergenic | 25.0% |
| TATTGACGTTAAGTCTAATG+AGG | + | chr1_4:14213865-14213884 | Msa0151850:five_prime_UTR | 30.0% | |
| ATTGACGTTAAGTCTAATGA+GGG | + | chr1_4:14213866-14213885 | Msa0151850:five_prime_UTR | 30.0% | |
| TTGCTTCACTGCATATAAAT+GGG | + | chr1_4:14214145-14214164 | Msa0151850:exon | 30.0% | |
| GCAAAATAGATTGATACCTT+TGG | - | chr1_4:14214261-14214280 | None:intergenic | 30.0% | |
| CGAAAAATTAGAAAAAGCTC+CGG | - | chr1_4:14214442-14214461 | None:intergenic | 30.0% | |
| TTATGGTGGTTTAGATATTC+TGG | + | chr1_4:14214719-14214738 | Msa0151850:CDS | 30.0% | |
| AAATAAGCATAGTGTAGATG+AGG | + | chr1_4:14214961-14214980 | Msa0151850:intron | 30.0% | |
| ATGACTATATTAGAGAGAGT+TGG | + | chr1_4:14215030-14215049 | Msa0151850:intron | 30.0% | |
| TGACTATATTAGAGAGAGTT+GGG | + | chr1_4:14215031-14215050 | Msa0151850:intron | 30.0% | |
| TGATCTTAACATTGTGAACA+TGG | + | chr1_4:14215331-14215350 | Msa0151850:intron | 30.0% | |
| ! | ACTATGAAGTATGTTGATTG+TGG | + | chr1_4:14215387-14215406 | Msa0151850:intron | 30.0% |
| AAATCTGAGCAAAACTATGA+AGG | - | chr1_4:14215700-14215719 | None:intergenic | 30.0% | |
| GTGATAAGGTAATAGGATAA+GGG | - | chr1_4:14215933-14215952 | None:intergenic | 30.0% | |
| ATAGTTTACCACAAAGTAGA+TGG | - | chr1_4:14216162-14216181 | None:intergenic | 30.0% | |
| GAGTAATATCGAGTTTCTTT+CGG | + | chr1_4:14216304-14216323 | Msa0151850:CDS | 30.0% | |
| ATAAGCATTAACAGCAAGTT+TGG | - | chr1_4:14216432-14216451 | None:intergenic | 30.0% | |
| ! | TTGCTGTTAATGCTTATACA+AGG | + | chr1_4:14216435-14216454 | Msa0151850:CDS | 30.0% |
| TAATGCTTATACAAGGCTTA+TGG | + | chr1_4:14216442-14216461 | Msa0151850:CDS | 30.0% | |
| ! | GAAAGTTTTGCACTTTACAG+CGG | + | chr1_4:14214106-14214125 | Msa0151850:five_prime_UTR | 35.0% |
| GTTGCTTCACTGCATATAAA+TGG | + | chr1_4:14214144-14214163 | Msa0151850:exon | 35.0% | |
| TCACTGCATATAAATGGGTA+AGG | + | chr1_4:14214150-14214169 | Msa0151850:exon | 35.0% | |
| TTGAAGAGATAAACCTTCTG+AGG | + | chr1_4:14214215-14214234 | Msa0151850:CDS | 35.0% | |
| AATAAGGAATAGACCTCAGA+AGG | - | chr1_4:14214231-14214250 | None:intergenic | 35.0% | |
| TTCCTTATTCAGATCACCAA+AGG | + | chr1_4:14214242-14214261 | Msa0151850:CDS | 35.0% | |
| ! | TACCTTTGGTGATCTGAATA+AGG | - | chr1_4:14214247-14214266 | None:intergenic | 35.0% |
| AATTTCAAACCACTCTTGTC+CGG | + | chr1_4:14214420-14214439 | Msa0151850:intron | 35.0% | |
| ! | GAATTGGGTTTGAGATTTGT+AGG | + | chr1_4:14214529-14214548 | Msa0151850:CDS | 35.0% |
| ! | TGAATCAATTAGGGTTTTGC+AGG | + | chr1_4:14214611-14214630 | Msa0151850:CDS | 35.0% |
| GACTATATTAGAGAGAGTTG+GGG | + | chr1_4:14215032-14215051 | Msa0151850:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGA+TGG | + | chr1_4:14215056-14215075 | Msa0151850:intron | 35.0% | |
| ACCTATAGTAGAAAAGATGG+TGG | + | chr1_4:14215059-14215078 | Msa0151850:intron | 35.0% | |
| ! | TCCACCATCTTTTCTACTAT+AGG | - | chr1_4:14215063-14215082 | None:intergenic | 35.0% |
| CACCTATAGATTCTGTAGTA+AGG | + | chr1_4:14215117-14215136 | Msa0151850:intron | 35.0% | |
| CTCCTTACTACAGAATCTAT+AGG | - | chr1_4:14215122-14215141 | None:intergenic | 35.0% | |
| TTCTACCATACACCATGTTT+CGG | - | chr1_4:14215241-14215260 | None:intergenic | 35.0% | |
| ATGGTGTATGGTAGAACATA+TGG | + | chr1_4:14215245-14215264 | Msa0151850:intron | 35.0% | |
| GTGAACATGGAATTAAACAC+AGG | + | chr1_4:14215344-14215363 | Msa0151850:intron | 35.0% | |
| TAATGGTAGGTAAACAATGC+TGG | + | chr1_4:14215451-14215470 | Msa0151850:intron | 35.0% | |
| ! | GCTGGTGTTAATTTCAATCT+CGG | + | chr1_4:14215469-14215488 | Msa0151850:CDS | 35.0% |
| ACAACGGATGGTTTCATTAA+TGG | - | chr1_4:14215577-14215596 | None:intergenic | 35.0% | |
| TTAATGAAACCATCCGTTGT+TGG | + | chr1_4:14215577-14215596 | Msa0151850:CDS | 35.0% | |
| ! | CATCTCACTGTCATCTTTTT+GGG | + | chr1_4:14215748-14215767 | Msa0151850:intron | 35.0% |
| !! | TTCTGAAATATACCGCCTAA+AGG | + | chr1_4:14215805-14215824 | Msa0151850:intron | 35.0% |
| AGTCATGGTAAAACACCTTT+AGG | - | chr1_4:14215823-14215842 | None:intergenic | 35.0% | |
| ATAAGGTAATAGGATAAGGG+CGG | - | chr1_4:14215930-14215949 | None:intergenic | 35.0% | |
| GGTGATAAGGTAATAGGATA+AGG | - | chr1_4:14215934-14215953 | None:intergenic | 35.0% | |
| AAGGAATTGCAGCATTTGAA+AGG | - | chr1_4:14216097-14216116 | None:intergenic | 35.0% | |
| CATCACTAGAGTATGCTAAA+AGG | - | chr1_4:14216116-14216135 | None:intergenic | 35.0% | |
| ! | TTTGATTGCGCTTCATTTTG+TGG | + | chr1_4:14216195-14216214 | Msa0151850:intron | 35.0% |
| TAATATCGAGTTTCTTTCGG+AGG | + | chr1_4:14216307-14216326 | Msa0151850:CDS | 35.0% | |
| !! | ACAAAAATTTTCTGGCCTTC+TGG | - | chr1_4:14216488-14216507 | None:intergenic | 35.0% |
| ! | TTTTGTTAACTGCTATTGCC+CGG | + | chr1_4:14216502-14216521 | Msa0151850:CDS | 35.0% |
| AATTGTTTGGTCATGCAGAA+GGG | - | chr1_4:14216606-14216625 | None:intergenic | 35.0% | |
| TAATTGTTTGGTCATGCAGA+AGG | - | chr1_4:14216607-14216626 | None:intergenic | 35.0% | |
| TCTGCATGACCAAACAATTA+TGG | + | chr1_4:14216607-14216626 | Msa0151850:CDS | 35.0% | |
| CTGCATGACCAAACAATTAT+GGG | + | chr1_4:14216608-14216627 | Msa0151850:CDS | 35.0% | |
| !!! | GAAGTTTTTTTGCTGAGAGA+CGG | + | chr1_4:14216630-14216649 | Msa0151850:CDS | 35.0% |
| !!! | AAGTTTTTTTGCTGAGAGAC+GGG | + | chr1_4:14216631-14216650 | Msa0151850:CDS | 35.0% |
| !! | AGCGGATTTTGTATGTGTTA+TGG | + | chr1_4:14216716-14216735 | Msa0151850:three_prime_UTR | 35.0% |
| TTGTATGTGTTATGGCTTAG+CGG | + | chr1_4:14216724-14216743 | Msa0151850:three_prime_UTR | 35.0% | |
| ACCTTATTATCAATGGTGGT+CGG | - | chr1_4:14216801-14216820 | None:intergenic | 35.0% | |
| CCTAACCTTATTATCAATGG+TGG | - | chr1_4:14216805-14216824 | None:intergenic | 35.0% | |
| ! | CCACCATTGATAATAAGGTT+AGG | + | chr1_4:14216802-14216821 | Msa0151850:three_prime_UTR | 35.0% |
| CTGCATATAAATGGGTAAGG+CGG | + | chr1_4:14214153-14214172 | Msa0151850:exon | 40.0% | |
| AACCACAGCAATAGTTTCCT+TGG | - | chr1_4:14214493-14214512 | None:intergenic | 40.0% | |
| GAAACTATTGCTGTGGTTAC+CGG | + | chr1_4:14214495-14214514 | Msa0151850:CDS | 40.0% | |
| ACATCAAGAGATGCTAATGC+TGG | + | chr1_4:14214585-14214604 | Msa0151850:CDS | 40.0% | |
| ! | ATGCTGGTGCTGAATCAATT+AGG | + | chr1_4:14214601-14214620 | Msa0151850:CDS | 40.0% |
| ! | TGCTGGTGCTGAATCAATTA+GGG | + | chr1_4:14214602-14214621 | Msa0151850:CDS | 40.0% |
| ! | TCAATTAGGGTTTTGCAGGA+AGG | + | chr1_4:14214615-14214634 | Msa0151850:CDS | 40.0% |
| CAGTGGTTGCAGGAAAATTA+TGG | + | chr1_4:14214702-14214721 | Msa0151850:CDS | 40.0% | |
| TGGTTGCAGGAAAATTATGG+TGG | + | chr1_4:14214705-14214724 | Msa0151850:CDS | 40.0% | |
| TGGATAGATTACAACAGCAC+AGG | - | chr1_4:14214775-14214794 | None:intergenic | 40.0% | |
| ATCTAAATGGAACAGAGTGC+TGG | + | chr1_4:14214905-14214924 | Msa0151850:intron | 40.0% | |
| GTGGTAAGACTAGATGAGAT+AGG | + | chr1_4:14215000-14215019 | Msa0151850:intron | 40.0% | |
| TAGTGAGTTGTACCGAAACA+TGG | + | chr1_4:14215226-14215245 | Msa0151850:intron | 40.0% | |
| TTGTACCGAAACATGGTGTA+TGG | + | chr1_4:14215233-14215252 | Msa0151850:intron | 40.0% | |
| ! | AAGCCTTTTCTCACTAAGTG+GGG | - | chr1_4:14215294-14215313 | None:intergenic | 40.0% |
| ! | CAAGCCTTTTCTCACTAAGT+GGG | - | chr1_4:14215295-14215314 | None:intergenic | 40.0% |
| TACAATTCGAGCACCAACAA+CGG | - | chr1_4:14215593-14215612 | None:intergenic | 40.0% | |
| GTAAATGTAAGCTCACGTCT+AGG | + | chr1_4:14215610-14215629 | Msa0151850:CDS | 40.0% | |
| ! | GCATCTCACTGTCATCTTTT+TGG | + | chr1_4:14215747-14215766 | Msa0151850:intron | 40.0% |
| CATGGTAAAACACCTTTAGG+CGG | - | chr1_4:14215820-14215839 | None:intergenic | 40.0% | |
| ATTTCATAGGGGCAAAGTCA+TGG | - | chr1_4:14215838-14215857 | None:intergenic | 40.0% | |
| TGACTTTGCCCCTATGAAAT+AGG | + | chr1_4:14215838-14215857 | Msa0151850:intron | 40.0% | |
| GACTTTGCCCCTATGAAATA+GGG | + | chr1_4:14215839-14215858 | Msa0151850:intron | 40.0% | |
| ACTTTGCCCCTATGAAATAG+GGG | + | chr1_4:14215840-14215859 | Msa0151850:intron | 40.0% | |
| TACAGACCCCTATTTCATAG+GGG | - | chr1_4:14215849-14215868 | None:intergenic | 40.0% | |
| CTACAGACCCCTATTTCATA+GGG | - | chr1_4:14215850-14215869 | None:intergenic | 40.0% | |
| GGTCTGTAGCTGATGTTTAT+CGG | + | chr1_4:14215861-14215880 | Msa0151850:intron | 40.0% | |
| TAAGGTAATAGGATAAGGGC+GGG | - | chr1_4:14215929-14215948 | None:intergenic | 40.0% | |
| TCACTAGACCATCTACTTTG+TGG | + | chr1_4:14216151-14216170 | Msa0151850:intron | 40.0% | |
| ! | AATCACCAATGTAGCCTTGA+GGG | + | chr1_4:14216274-14216293 | Msa0151850:CDS | 40.0% |
| AACAAGTAGAAGATGGAAGC+TGG | + | chr1_4:14216363-14216382 | Msa0151850:CDS | 40.0% | |
| TTTGTTAACTGCTATTGCCC+GGG | + | chr1_4:14216503-14216522 | Msa0151850:CDS | 40.0% | |
| TAACACCATGGCATTGTTCT+TGG | - | chr1_4:14216690-14216709 | None:intergenic | 40.0% | |
| ! | AGAACAATGCCATGGTGTTA+TGG | + | chr1_4:14216690-14216709 | Msa0151850:three_prime_UTR | 40.0% |
| GCTGCAACACCATACTTATA+GGG | + | chr1_4:14216765-14216784 | Msa0151850:three_prime_UTR | 40.0% | |
| CAAAACCTGCCCTATAAGTA+TGG | - | chr1_4:14216777-14216796 | None:intergenic | 40.0% | |
| ! | TCCGACCACCATTGATAATA+AGG | + | chr1_4:14216797-14216816 | Msa0151850:three_prime_UTR | 40.0% |
| TACAGCGGCAATAGTGATTC+TGG | + | chr1_4:14214121-14214140 | Msa0151850:five_prime_UTR | 45.0% | |
| ACAGCGGCAATAGTGATTCT+GGG | + | chr1_4:14214122-14214141 | Msa0151850:five_prime_UTR | 45.0% | |
| CGTCAATTCCGAGTACATGT+AGG | + | chr1_4:14214460-14214479 | Msa0151850:intron | 45.0% | |
| CAATTCCGAGTACATGTAGG+TGG | + | chr1_4:14214463-14214482 | Msa0151850:intron | 45.0% | |
| GTCCAAGGAAACTATTGCTG+TGG | + | chr1_4:14214488-14214507 | Msa0151850:CDS | 45.0% | |
| !! | TGTAGGCAACTTGCTACTCA+TGG | + | chr1_4:14214546-14214565 | Msa0151850:CDS | 45.0% |
| ! | ATTAGGGTTTTGCAGGAAGG+TGG | + | chr1_4:14214618-14214637 | Msa0151850:CDS | 45.0% |
| CCACTGAACAAAGTGGTTGA+TGG | - | chr1_4:14214688-14214707 | None:intergenic | 45.0% | |
| CCATCAACCACTTTGTTCAG+TGG | + | chr1_4:14214685-14214704 | Msa0151850:CDS | 45.0% | |
| GATTACAACAGCACAGGCTA+TGG | - | chr1_4:14214769-14214788 | None:intergenic | 45.0% | |
| TGTAGATGAGGATGTTGCGT+TGG | + | chr1_4:14214973-14214992 | Msa0151850:intron | 45.0% | |
| TGACCCCACTTAGTGAGAAA+AGG | + | chr1_4:14215288-14215307 | Msa0151850:intron | 45.0% | |
| ! | CCAAGCCTTTTCTCACTAAG+TGG | - | chr1_4:14215296-14215315 | None:intergenic | 45.0% |
| CCACTTAGTGAGAAAAGGCT+TGG | + | chr1_4:14215293-14215312 | Msa0151850:intron | 45.0% | |
| TCACGTCTAGGTCGACTAAA+CGG | + | chr1_4:14215622-14215641 | Msa0151850:CDS | 45.0% | |
| TAGGTCGACTAAACGGAAGA+CGG | + | chr1_4:14215629-14215648 | Msa0151850:CDS | 45.0% | |
| GCTACAGACCCCTATTTCAT+AGG | - | chr1_4:14215851-14215870 | None:intergenic | 45.0% | |
| ! | TGTATTTGCCCCTCTAGAAG+AGG | - | chr1_4:14215898-14215917 | None:intergenic | 45.0% |
| AAGGTAATAGGATAAGGGCG+GGG | - | chr1_4:14215928-14215947 | None:intergenic | 45.0% | |
| ! | AGTTGATGCAGTGAAGCAGA+TGG | + | chr1_4:14215978-14215997 | Msa0151850:intron | 45.0% |
| ! | GAATCACCAATGTAGCCTTG+AGG | + | chr1_4:14216273-14216292 | Msa0151850:CDS | 45.0% |
| ATTACTCAGTTGCTCCCTCA+AGG | - | chr1_4:14216291-14216310 | None:intergenic | 45.0% | |
| TTTCGGAGGAACTGATTGAC+AGG | + | chr1_4:14216321-14216340 | Msa0151850:CDS | 45.0% | |
| AAGATGGAAGCTGGACATCA+GGG | + | chr1_4:14216372-14216391 | Msa0151850:CDS | 45.0% | |
| CTTATACAAGGCTTATGGCG+AGG | + | chr1_4:14216447-14216466 | Msa0151850:CDS | 45.0% | |
| !! | ACGGCTTTAACAGGTTTTGC+AGG | + | chr1_4:14216536-14216555 | Msa0151850:CDS | 45.0% |
| !! | CGGCTTTAACAGGTTTTGCA+GGG | + | chr1_4:14216537-14216556 | Msa0151850:CDS | 45.0% |
| TGCAGGGAACAATACTGTTG+AGG | + | chr1_4:14216553-14216572 | Msa0151850:CDS | 45.0% | |
| GGGAACAATACTGTTGAGGA+AGG | + | chr1_4:14216557-14216576 | Msa0151850:CDS | 45.0% | |
| AAGGAGCTGATACTGGAGTA+TGG | + | chr1_4:14216576-14216595 | Msa0151850:CDS | 45.0% | |
| !!! | TGGCTTAGCGGAGTTTTTTC+TGG | + | chr1_4:14216736-14216755 | Msa0151850:three_prime_UTR | 45.0% |
| GGCTGCAACACCATACTTAT+AGG | + | chr1_4:14216764-14216783 | Msa0151850:three_prime_UTR | 45.0% | |
| CAACACCATACTTATAGGGC+AGG | + | chr1_4:14216769-14216788 | Msa0151850:three_prime_UTR | 45.0% | |
| !! | ACTGCTGTTAGTTTGCTGCT+AGG | + | chr1_4:14216846-14216865 | Msa0151850:three_prime_UTR | 45.0% |
| AATGGGTAAGGCGGAGAAGA+AGG | + | chr1_4:14214162-14214181 | Msa0151850:exon | 50.0% | |
| TAAGGCGGAGAAGAAGGAGA+AGG | + | chr1_4:14214168-14214187 | Msa0151850:CDS | 50.0% | |
| GAAAAAGCTCCGGACAAGAG+TGG | - | chr1_4:14214432-14214451 | None:intergenic | 50.0% | |
| TTCCGAGTACATGTAGGTGG+TGG | + | chr1_4:14214466-14214485 | Msa0151850:intron | 50.0% | |
| GACCACCACCTACATGTACT+CGG | - | chr1_4:14214471-14214490 | None:intergenic | 50.0% | |
| ! | TACATGTAGGTGGTGGTCCA+AGG | + | chr1_4:14214473-14214492 | Msa0151850:intron | 50.0% |
| ACTATTGCTGTGGTTACCGG+CGG | + | chr1_4:14214498-14214517 | Msa0151850:CDS | 50.0% | |
| ! | GGTTTTGCAGGAAGGTGGTT+TGG | + | chr1_4:14214623-14214642 | Msa0151850:CDS | 50.0% |
| CCTGCAACCACTGAACAAAG+TGG | - | chr1_4:14214695-14214714 | None:intergenic | 50.0% | |
| CCACTTTGTTCAGTGGTTGC+AGG | + | chr1_4:14214692-14214711 | Msa0151850:CDS | 50.0% | |
| AGGATGTTGCGTTGGATGTG+TGG | + | chr1_4:14214981-14215000 | Msa0151850:intron | 50.0% | |
| CTCTGTCTCTAGCGATCTGA+CGG | - | chr1_4:14215169-14215188 | None:intergenic | 50.0% | |
| ACTAAGTGGGGTCAGCTACA+TGG | - | chr1_4:14215282-14215301 | None:intergenic | 50.0% | |
| CTCTGTTGAAAATGCGCGCA+AGG | + | chr1_4:14215501-14215520 | Msa0151850:CDS | 50.0% | |
| ATTCGAGCACCAACAACGGA+TGG | - | chr1_4:14215589-14215608 | None:intergenic | 50.0% | |
| TTAGCCGCTTCCTCTTCTAG+AGG | + | chr1_4:14215885-14215904 | Msa0151850:intron | 50.0% | |
| TAGCCGCTTCCTCTTCTAGA+GGG | + | chr1_4:14215886-14215905 | Msa0151850:intron | 50.0% | |
| TTGCTCCCTCAAGGCTACAT+TGG | - | chr1_4:14216282-14216301 | None:intergenic | 50.0% | |
| GAAGATGGAAGCTGGACATC+AGG | + | chr1_4:14216371-14216390 | Msa0151850:CDS | 50.0% | |
| AGATGGAAGCTGGACATCAG+GGG | + | chr1_4:14216373-14216392 | Msa0151850:CDS | 50.0% | |
| TTAACTGCTATTGCCCGGGT+TGG | + | chr1_4:14216507-14216526 | Msa0151850:CDS | 50.0% | |
| TAACTGCTATTGCCCGGGTT+GGG | + | chr1_4:14216508-14216527 | Msa0151850:CDS | 50.0% | |
| ! | TGGGTGAAGACGGCTTTAAC+AGG | + | chr1_4:14216527-14216546 | Msa0151850:CDS | 50.0% |
| GTTGAGGAAGGAGCTGATAC+TGG | + | chr1_4:14216569-14216588 | Msa0151850:CDS | 50.0% | |
| AGCAGCCAAGAACAATGCCA+TGG | + | chr1_4:14216682-14216701 | Msa0151850:three_prime_UTR | 50.0% | |
| !! | GCCATGGTGTTATGGCATAG+CGG | + | chr1_4:14216698-14216717 | Msa0151850:three_prime_UTR | 50.0% |
| TCCGCTATGCCATAACACCA+TGG | - | chr1_4:14216702-14216721 | None:intergenic | 50.0% | |
| !!! | GCGGAGTTTTTTCTGGTCGT+AGG | + | chr1_4:14216743-14216762 | Msa0151850:three_prime_UTR | 50.0% |
| ACCGGCGGAAACAGAGGAAT+TGG | + | chr1_4:14214513-14214532 | Msa0151850:CDS | 55.0% | |
| CCCAATTCCTCTGTTTCCGC+CGG | - | chr1_4:14214517-14214536 | None:intergenic | 55.0% | |
| CCGGCGGAAACAGAGGAATT+GGG | + | chr1_4:14214514-14214533 | Msa0151850:CDS | 55.0% | |
| ! | GCAGGAAGGTGGTTTGGATG+TGG | + | chr1_4:14214629-14214648 | Msa0151850:CDS | 55.0% |
| !! | GAACAGAGTGCTGGCTTGCT+GGG | + | chr1_4:14214914-14214933 | Msa0151850:intron | 55.0% |
| CGTCAGATCGCTAGAGACAG+AGG | + | chr1_4:14215167-14215186 | Msa0151850:intron | 55.0% | |
| ! | AGCCGCTTCCTCTTCTAGAG+GGG | + | chr1_4:14215887-14215906 | Msa0151850:intron | 55.0% |
| ! | TGCCCCTCTAGAAGAGGAAG+CGG | - | chr1_4:14215892-14215911 | None:intergenic | 55.0% |
| AATAGGATAAGGGCGGGGTC+AGG | - | chr1_4:14215923-14215942 | None:intergenic | 55.0% | |
| GATGGAAGCTGGACATCAGG+GGG | + | chr1_4:14216374-14216393 | Msa0151850:CDS | 55.0% | |
| ATGGAAGCTGGACATCAGGG+GGG | + | chr1_4:14216375-14216394 | Msa0151850:CDS | 55.0% | |
| AAGCTTTCCGAGCGACCAGA+AGG | + | chr1_4:14216470-14216489 | Msa0151850:CDS | 55.0% | |
| ! | TTTCTGGCCTTCTGGTCGCT+CGG | - | chr1_4:14216480-14216499 | None:intergenic | 55.0% |
| AAAGCCGTCTTCACCCAACC+CGG | - | chr1_4:14216524-14216543 | None:intergenic | 55.0% | |
| GTGGTTACCGGCGGAAACAG+AGG | + | chr1_4:14214507-14214526 | Msa0151850:CDS | 60.0% | |
| !! | GGAACAGAGTGCTGGCTTGC+TGG | + | chr1_4:14214913-14214932 | Msa0151850:intron | 60.0% |
| ! | TTGCCCGGGTTGGGTGAAGA+CGG | + | chr1_4:14216517-14216536 | Msa0151850:CDS | 60.0% |
| AAGCCGTCTTCACCCAACCC+GGG | - | chr1_4:14216523-14216542 | None:intergenic | 60.0% | |
| !! | CAGAGTGCTGGCTTGCTGGG+CGG | + | chr1_4:14214917-14214936 | Msa0151850:intron | 65.0% |
| GAAGCTGGACATCAGGGGGG+TGG | + | chr1_4:14216378-14216397 | Msa0151850:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 14213832 | 14216939 | 14213832 | ID=Msa0151850;Name=Msa0151850 |
| chr1_4 | mRNA | 14213832 | 14216939 | 14213832 | ID=Msa0151850-mRNA-1;Parent=Msa0151850;Name=Msa0151850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=204|1|1|1|0.75|0.6|5|272|316 |
| chr1_4 | exon | 14213832 | 14213942 | 14213832 | ID=Msa0151850-mRNA-1:exon:5600;Parent=Msa0151850-mRNA-1 |
| chr1_4 | exon | 14214070 | 14214263 | 14214070 | ID=Msa0151850-mRNA-1:exon:5601;Parent=Msa0151850-mRNA-1 |
| chr1_4 | exon | 14214482 | 14214740 | 14214482 | ID=Msa0151850-mRNA-1:exon:5602;Parent=Msa0151850-mRNA-1 |
| chr1_4 | exon | 14215460 | 14215654 | 14215460 | ID=Msa0151850-mRNA-1:exon:5603;Parent=Msa0151850-mRNA-1 |
| chr1_4 | exon | 14216272 | 14216939 | 14216272 | ID=Msa0151850-mRNA-1:exon:5604;Parent=Msa0151850-mRNA-1 |
| chr1_4 | five_prime_UTR | 14213832 | 14213942 | 14213832 | ID=Msa0151850-mRNA-1:five_prime_utr;Parent=Msa0151850-mRNA-1 |
| chr1_4 | five_prime_UTR | 14214070 | 14214162 | 14214070 | ID=Msa0151850-mRNA-1:five_prime_utr;Parent=Msa0151850-mRNA-1 |
| chr1_4 | CDS | 14214163 | 14214263 | 14214163 | ID=Msa0151850-mRNA-1:cds;Parent=Msa0151850-mRNA-1 |
| chr1_4 | CDS | 14214482 | 14214740 | 14214482 | ID=Msa0151850-mRNA-1:cds;Parent=Msa0151850-mRNA-1 |
| chr1_4 | CDS | 14215460 | 14215654 | 14215460 | ID=Msa0151850-mRNA-1:cds;Parent=Msa0151850-mRNA-1 |
| chr1_4 | CDS | 14216272 | 14216667 | 14216272 | ID=Msa0151850-mRNA-1:cds;Parent=Msa0151850-mRNA-1 |
| chr1_4 | three_prime_UTR | 14216668 | 14216939 | 14216668 | ID=Msa0151850-mRNA-1:three_prime_utr;Parent=Msa0151850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
