AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0218580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218580 MtrunA17_Chr2g0320631 97.955 538 11 0 1 538 1 538 0.0 1098
Msa0218580 MtrunA17_Chr4g0027671 76.394 538 118 4 9 539 8 543 0.0 839
Msa0218580 MtrunA17_Chr1g0179611 69.794 533 140 6 7 529 11 532 0.0 780
Msa0218580 MtrunA17_Chr5g0407121 48.713 505 179 4 19 522 17 442 1.68e-170 489
Msa0218580 MtrunA17_Chr8g0370321 47.817 504 181 5 19 522 17 438 2.18e-166 479
Msa0218580 MtrunA17_Chr4g0058241 37.342 158 92 4 25 182 84 234 4.93e-27 113
Msa0218580 MtrunA17_Chr4g0058241 29.146 199 106 6 296 477 243 423 1.01e-14 76.3
Msa0218580 MtrunA17_Chr3g0116701 36.943 157 92 4 25 181 80 229 1.01e-25 109
Msa0218580 MtrunA17_Chr3g0116701 30.189 212 110 9 284 477 228 419 1.31e-18 88.2
Msa0218580 MtrunA17_Chr3g0139371 37.037 162 95 4 20 181 55 209 1.49e-25 108
Msa0218580 MtrunA17_Chr3g0139371 34.483 174 87 5 318 477 238 398 3.07e-22 99.0
Msa0218580 MtrunA17_Chr3g0123491 32.911 158 99 4 25 182 79 229 3.66e-23 102
Msa0218580 MtrunA17_Chr3g0123491 28.249 177 98 5 318 479 260 422 9.37e-15 76.6
Msa0218580 MtrunA17_Chr8g0369241 37.762 143 83 3 40 181 139 276 1.64e-21 99.0
Msa0218580 MtrunA17_Chr8g0369241 29.167 240 116 7 309 500 273 506 1.57e-15 80.1
Msa0218580 MtrunA17_Chr6g0480541 31.737 167 102 4 316 478 1043 1201 8.17e-20 94.0
Msa0218580 MtrunA17_Chr6g0480541 34.459 148 88 3 38 181 896 1038 4.98e-15 78.6
Msa0218580 MtrunA17_Chr5g0437131 31.429 175 106 6 316 484 546 712 8.78e-19 90.1
Msa0218580 MtrunA17_Chr5g0437131 37.838 148 83 3 38 181 401 543 1.07e-15 80.5
Msa0218580 MtrunA17_Chr1g0210061 30.108 186 109 4 309 479 748 927 6.48e-16 81.3
Msa0218580 MtrunA17_Chr1g0210061 31.875 160 98 5 25 179 596 749 1.60e-15 80.1
Msa0218580 MtrunA17_Chr4g0045841 34.091 176 93 9 308 479 186 342 8.48e-12 67.0
Msa0218580 MtrunA17_Chr4g0030231 33.333 174 96 7 309 479 172 328 9.08e-12 67.0
Msa0218580 MtrunA17_Chr4g0065851 29.958 237 131 11 307 532 155 367 2.82e-11 66.2
Msa0218580 MtrunA17_Chr8g0348481 33.708 178 90 9 308 478 168 324 4.17e-11 64.7
Msa0218580 MtrunA17_Chr8g0387401 32.258 186 100 8 309 488 184 349 4.85e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218580 AT3G53030.1 70.349 516 138 3 7 522 9 509 0.0 756
Msa0218580 AT3G44850.1 71.082 536 135 6 1 523 1 529 0.0 744
Msa0218580 AT5G22840.1 69.772 526 139 4 7 527 12 522 0.0 739
Msa0218580 AT4G35500.1 48.954 478 177 5 21 492 19 435 5.71e-165 476
Msa0218580 AT4G35500.2 46.973 479 186 6 21 492 19 436 1.47e-155 451
Msa0218580 AT2G17530.2 63.483 178 65 0 21 198 19 196 3.37e-79 253
Msa0218580 AT2G17530.2 47.500 160 76 2 253 404 183 342 9.26e-40 148
Msa0218580 AT2G17530.1 60.417 192 73 1 21 212 19 207 8.38e-78 252
Msa0218580 AT2G17530.1 44.128 281 124 3 253 525 183 438 1.18e-76 249
Msa0218580 AT2G17530.3 60.417 192 73 1 21 212 19 207 8.38e-78 252
Msa0218580 AT2G17530.3 44.128 281 124 3 253 525 183 438 1.18e-76 249
Msa0218580 AT4G24740.4 34.171 199 116 6 25 216 84 274 8.74e-27 111
Msa0218580 AT4G24740.3 34.171 199 116 6 25 216 84 274 1.41e-26 111
Msa0218580 AT4G24740.3 42.529 87 44 2 318 404 263 343 1.66e-14 75.5
Msa0218580 AT4G24740.7 34.171 199 116 6 25 216 46 236 1.94e-26 111
Msa0218580 AT4G24740.7 31.844 179 87 7 318 478 225 386 2.77e-17 84.3
Msa0218580 AT4G24740.1 34.171 199 116 6 25 216 84 274 3.07e-26 111
Msa0218580 AT4G24740.1 31.844 179 87 7 318 478 263 424 3.43e-17 84.3
Msa0218580 AT4G32660.2 37.037 162 95 4 20 181 52 206 5.81e-25 106
Msa0218580 AT4G32660.2 38.095 105 58 2 318 421 235 333 1.16e-14 75.9
Msa0218580 AT4G32660.1 37.037 162 95 4 20 181 52 206 8.00e-25 107
Msa0218580 AT4G32660.1 32.203 177 92 5 318 479 235 398 1.01e-17 85.9
Msa0218580 AT4G32660.3 37.037 162 95 3 20 181 44 198 8.03e-25 107
Msa0218580 AT4G32660.3 32.203 177 92 5 318 479 227 390 9.77e-18 85.9
Msa0218580 AT4G24740.5 38.411 151 86 4 46 196 1 144 3.20e-24 102
Msa0218580 AT4G24740.5 42.529 87 44 2 318 404 160 240 8.86e-15 74.7
Msa0218580 AT3G53570.1 36.943 157 92 4 25 181 101 250 4.21e-24 105
Msa0218580 AT3G53570.1 29.148 223 120 7 284 488 249 451 8.26e-19 89.7
Msa0218580 AT3G53570.4 36.943 157 92 4 25 181 101 250 4.21e-24 105
Msa0218580 AT3G53570.4 29.148 223 120 7 284 488 249 451 8.26e-19 89.7
Msa0218580 AT3G53570.2 36.943 157 92 4 25 181 101 250 4.21e-24 105
Msa0218580 AT3G53570.2 29.148 223 120 7 284 488 249 451 8.26e-19 89.7
Msa0218580 AT3G53570.3 36.943 157 92 4 25 181 87 236 5.22e-24 105
Msa0218580 AT3G53570.3 29.148 223 120 7 284 488 235 437 8.82e-19 89.7
Msa0218580 AT3G53570.5 36.943 157 92 4 25 181 87 236 5.22e-24 105
Msa0218580 AT3G53570.5 29.148 223 120 7 284 488 235 437 8.82e-19 89.7
Msa0218580 AT4G24740.6 38.411 151 86 4 46 196 1 144 6.82e-24 103
Msa0218580 AT4G24740.6 31.844 179 87 7 318 478 160 321 1.49e-17 84.3
Msa0218580 AT4G24740.9 38.411 151 86 4 46 196 1 144 6.82e-24 103
Msa0218580 AT4G24740.9 31.844 179 87 7 318 478 160 321 1.49e-17 84.3
Msa0218580 AT4G24740.2 38.411 151 86 4 46 196 1 144 6.82e-24 103
Msa0218580 AT4G24740.2 31.844 179 87 7 318 478 160 321 1.49e-17 84.3
Msa0218580 AT5G35980.1 37.584 149 87 3 40 187 122 265 8.54e-23 103
Msa0218580 AT5G35980.1 29.825 228 99 9 307 483 253 470 1.72e-14 77.0
Msa0218580 AT5G35980.3 37.584 149 87 3 40 187 87 230 8.87e-23 103
Msa0218580 AT5G35980.3 30.263 228 98 8 307 483 218 435 2.50e-14 76.6
Msa0218580 AT5G35980.2 37.584 149 87 3 40 187 122 265 1.47e-22 102
Msa0218580 AT5G35980.2 30.263 228 98 8 307 483 253 470 1.62e-14 77.0
Msa0218580 AT1G73460.2 32.584 178 106 5 307 478 992 1161 1.32e-21 99.8
Msa0218580 AT1G73460.2 34.459 148 88 3 38 181 856 998 6.86e-15 78.6
Msa0218580 AT1G73460.1 32.584 178 106 5 307 478 992 1161 1.32e-21 99.8
Msa0218580 AT1G73460.1 34.459 148 88 3 38 181 856 998 6.86e-15 78.6
Msa0218580 AT1G73450.1 32.584 178 106 5 307 478 975 1144 1.40e-21 99.8
Msa0218580 AT1G73450.1 34.459 148 88 3 38 181 839 981 7.51e-15 78.6
Msa0218580 AT2G40120.1 33.133 166 101 4 318 480 408 566 3.30e-20 94.7
Msa0218580 AT2G40120.1 33.548 155 94 3 31 181 252 401 1.26e-13 73.9
Msa0218580 AT4G24740.10 31.844 179 87 7 318 478 57 218 1.49e-18 85.1
Msa0218580 AT4G24740.8 31.844 179 87 7 318 478 57 218 1.49e-18 85.1
Msa0218580 AT4G32660.4 32.022 178 93 5 318 480 123 287 5.32e-18 85.1
Msa0218580 AT4G32660.4 38.000 100 56 2 82 181 1 94 1.05e-13 72.4
Msa0218580 AT3G17750.1 30.357 168 103 4 316 478 972 1130 1.98e-17 86.7
Msa0218580 AT3G17750.1 33.784 148 89 3 38 181 825 967 5.36e-14 75.9
Msa0218580 AT1G13350.1 33.750 160 95 5 25 179 428 581 2.40e-16 82.8
Msa0218580 AT1G13350.1 29.213 178 104 5 318 479 589 760 7.31e-15 78.2
Msa0218580 AT1G13350.2 33.750 160 95 5 25 179 455 608 2.95e-16 82.8
Msa0218580 AT1G13350.2 29.213 178 104 5 318 479 616 787 9.13e-15 77.8
Msa0218580 AT3G25840.1 32.500 160 97 5 25 179 603 756 4.51e-16 82.4
Msa0218580 AT3G25840.1 32.240 183 91 8 318 479 764 934 3.46e-15 79.3
Msa0218580 AT1G13350.3 33.750 160 95 5 25 179 501 654 5.40e-16 82.0
Msa0218580 AT1G13350.3 29.213 178 104 5 318 479 662 833 1.23e-14 77.4
Msa0218580 AT3G25840.2 32.500 160 97 5 25 179 341 494 1.43e-15 80.5
Msa0218580 AT3G25840.2 32.240 183 91 8 318 479 502 672 3.44e-15 79.0
Msa0218580 AT3G53640.1 30.899 178 101 6 318 479 470 641 4.15e-15 79.0
Msa0218580 AT3G53640.1 31.875 160 98 5 25 179 309 462 1.10e-13 74.3
Msa0218580 AT3G59790.1 31.818 176 95 8 309 479 192 347 2.00e-11 66.2
Msa0218580 AT4G11330.1 32.203 177 94 8 309 479 175 331 5.79e-11 64.7

Find 166 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAGTGAATGGGAAAATT+AGG 0.138672 2_1:-65841865 None:intergenic
CTCTTGGCGGCCGCTATTCC+CGG 0.220901 2_1:+65846454 Msa0218580:CDS
TCTTTACTTGTGGGACTATT+AGG 0.223443 2_1:-65843663 None:intergenic
AAGTGCAAGCTTGTGGATTT+TGG 0.224760 2_1:+65843792 Msa0218580:CDS
TTGGACCACTTTAAGCATTC+AGG 0.246674 2_1:+65843162 Msa0218580:CDS
TGGAAATCTTTGAGTGTCTT+TGG 0.254658 2_1:-65846816 None:intergenic
AGAAATTTGCTACCATGTTT+TGG 0.273662 2_1:+65843290 Msa0218580:CDS
ACATTCGCCGGTTGCGGTTC+TGG 0.294454 2_1:+65846508 Msa0218580:CDS
CGCTTGGGATACTCAGAAAT+TGG 0.296679 2_1:+65842199 Msa0218580:CDS
GGAGGCTGTGGAAGTTAGTA+TGG 0.298166 2_1:+65846770 Msa0218580:CDS
TTTCAACTGTTTGGCTCGCT+TGG 0.308825 2_1:+65842183 Msa0218580:CDS
GGATCTTTAGATGGATCTAT+TGG 0.324147 2_1:-65843390 None:intergenic
AGCAATGACTTCTGAAACTA+AGG 0.331800 2_1:+65843692 Msa0218580:CDS
CACAAGGAAGTCAGGTTTCT+AGG 0.332484 2_1:+65843721 Msa0218580:CDS
GGGTCATACTTAAGAGGTTA+TGG 0.335126 2_1:+65846972 Msa0218580:three_prime_UTR
CATTGATGATGGAGCTTCTC+GGG 0.335701 2_1:+65846142 Msa0218580:CDS
TTCAGTGAATGGGAAAATTA+GGG 0.339771 2_1:-65841864 None:intergenic
TGGCATAACTCCATTGTAAT+AGG 0.342783 2_1:-65847041 None:intergenic
TTGTTCAGAGTAAGCTTGGC+TGG 0.354810 2_1:+65842153 Msa0218580:CDS
GTGAAACCAATTGTAGAAAA+TGG 0.359586 2_1:+65843630 Msa0218580:CDS
TCTAAAGATCCTAGAAAATC+AGG 0.368774 2_1:+65843402 Msa0218580:CDS
GCTGATTCATCTTTACTTGT+GGG 0.369166 2_1:-65843672 None:intergenic
GCGGTTCTGGCCTATTACTA+AGG 0.369946 2_1:+65846521 Msa0218580:CDS
TTACTAGAATCATCTTGTTC+AGG 0.373035 2_1:-65843603 None:intergenic
TGAATCTATTTGAAGAATAA+TGG 0.374054 2_1:-65841942 None:intergenic
GGATAATGAGCATCTAATCT+AGG 0.378098 2_1:-65847189 None:intergenic
ATCCATGCTGATGCTATTAA+CGG 0.392213 2_1:+65846711 Msa0218580:CDS
TGGTTTGAGAAACCCTTCAT+AGG 0.394006 2_1:+65846992 Msa0218580:three_prime_UTR
AGATGTCCTGAGGTTCTTCT+AGG 0.395840 2_1:+65843870 Msa0218580:CDS
GAAATGTGTTGTGAAGCTTT+TGG 0.397383 2_1:+65843143 Msa0218580:CDS
GCATTGATGATGGAGCTTCT+CGG 0.398990 2_1:+65846141 Msa0218580:CDS
TAATGGTCAGCATGTTTGTA+TGG 0.402029 2_1:+65843188 Msa0218580:CDS
ATTTACTCTTCAGGATCATC+TGG 0.402061 2_1:+65846119 Msa0218580:intron
TTTAAGCATTCAGGGCCTAA+TGG 0.407435 2_1:+65843171 Msa0218580:CDS
TTCAACTGTTTGGCTCGCTT+GGG 0.408495 2_1:+65842184 Msa0218580:CDS
TTATAAGCATTATGTGCAAA+TGG 0.411340 2_1:+65846951 Msa0218580:three_prime_UTR
AGAATCCTCCTCTGCTGCCT+CGG 0.415247 2_1:-65843574 None:intergenic
GAGAAAAGCCTGGAAAGTTA+AGG 0.417273 2_1:+65846733 Msa0218580:CDS
GGATACAGTCTTGACTTTAG+TGG 0.417337 2_1:-65843445 None:intergenic
TGAGACACATTCGCCGGTTG+CGG 0.421836 2_1:+65846502 Msa0218580:CDS
TGCTGATTCATCTTTACTTG+TGG 0.423615 2_1:-65843673 None:intergenic
TGGACCACTTTAAGCATTCA+GGG 0.426302 2_1:+65843163 Msa0218580:CDS
TCCTCGGACTCTTGAGCCCT+CGG 0.427106 2_1:+65846680 Msa0218580:CDS
TCTCTTGCCCTACCCTATGA+AGG 0.427728 2_1:-65847005 None:intergenic
ATGGGGAATATGACCATTGA+TGG 0.429055 2_1:+65846789 Msa0218580:CDS
ATTAAGCTTCAAACTAGTAT+TGG 0.429527 2_1:-65841997 None:intergenic
GACATCTATACTGCCTAGTC+TGG 0.431990 2_1:-65843854 None:intergenic
TCCGTCAAAACCTTAGTAAT+AGG 0.434151 2_1:-65846531 None:intergenic
GCTTAATCCTTCGACTTCAA+TGG 0.441539 2_1:+65842013 Msa0218580:exon
TTCTTGTAAAAGTGTGTAGA+AGG 0.444333 2_1:+65847074 Msa0218580:three_prime_UTR
TGGTGGTGGATGAGAAAGAT+TGG 0.445967 2_1:-65841922 None:intergenic
GCCTGGAAAGTTAAGGGAAA+AGG 0.451200 2_1:+65846740 Msa0218580:CDS
GGATGTTCCACAAGGAAGTC+AGG 0.451642 2_1:+65843713 Msa0218580:CDS
TAGGGTAGGGCAAGAGAAGC+TGG 0.453382 2_1:+65847011 Msa0218580:three_prime_UTR
TTTCCCATTCACTGAATTCG+AGG 0.463468 2_1:+65841871 Msa0218580:five_prime_UTR
GAATCCTCCTCTGCTGCCTC+GGG 0.466324 2_1:-65843573 None:intergenic
AGAAAAGCCTGGAAAGTTAA+GGG 0.469505 2_1:+65846734 Msa0218580:CDS
TGTTCAGAGTAAGCTTGGCT+GGG 0.480298 2_1:+65842154 Msa0218580:CDS
TCTTGGCGGCCGCTATTCCC+GGG 0.484079 2_1:+65846455 Msa0218580:CDS
CTCAGTGTCTTACTCATCCA+TGG 0.484235 2_1:+65846646 Msa0218580:CDS
TCAAGACTGTATCCAAGAAC+GGG 0.487936 2_1:+65843454 Msa0218580:CDS
GGATCATCTGGCATTGATGA+TGG 0.488648 2_1:+65846131 Msa0218580:intron
ATACAAACATGCTGACCATT+AGG 0.491084 2_1:-65843186 None:intergenic
GTAGCAAATTTCTTTGACCA+TGG 0.492513 2_1:-65843280 None:intergenic
ATATGCTTTGAGCTTGCCAC+TGG 0.494568 2_1:+65843936 Msa0218580:CDS
CTCTTGCCCTACCCTATGAA+GGG 0.496347 2_1:-65847004 None:intergenic
ATTGGGTTGGAGTGAAATTG+AGG 0.498354 2_1:-65841904 None:intergenic
TATAAGCATTATGTGCAAAT+GGG 0.501452 2_1:+65846952 Msa0218580:three_prime_UTR
GGAAAGTCCCGAGGCAGCAG+AGG 0.502003 2_1:+65843566 Msa0218580:CDS
GCTATTAACGGAGAAAAGCC+TGG 0.503727 2_1:+65846723 Msa0218580:CDS
AAAGGACGAGCAGGAGGCTG+TGG 0.504267 2_1:+65846758 Msa0218580:CDS
GTTAAGGGAAAAGGACGAGC+AGG 0.505811 2_1:+65846749 Msa0218580:CDS
TAATAGGCCAGAACCGCAAC+CGG 0.505990 2_1:-65846515 None:intergenic
GATAATGAGCATCTAATCTA+GGG 0.506524 2_1:-65847188 None:intergenic
AAAACCTCGAATTCAGTGAA+TGG 0.506638 2_1:-65841875 None:intergenic
AAACCTCGAATTCAGTGAAT+GGG 0.509572 2_1:-65841874 None:intergenic
TATGTTGTTCAGAGTAAGCT+TGG 0.509816 2_1:+65842149 Msa0218580:CDS
TTGGGTTGGAGTGAAATTGA+GGG 0.513437 2_1:-65841903 None:intergenic
GCAAATGGGTCATACTTAAG+AGG 0.513458 2_1:+65846966 Msa0218580:three_prime_UTR
TTTGTTCAGATTGCTCTTGG+CGG 0.517367 2_1:+65846441 Msa0218580:intron
AATTTCTTTGACCATGGGAA+GGG 0.522927 2_1:-65843274 None:intergenic
GGTTATCATGCGGTTCAGAT+TGG 0.523054 2_1:+65842104 Msa0218580:CDS
TGTCTTTGGAGTTCCATCAA+TGG 0.524200 2_1:-65846802 None:intergenic
GAGAAACCCTTCATAGGGTA+GGG 0.526215 2_1:+65846998 Msa0218580:three_prime_UTR
TTAGTGGTTGGAAGTATAAG+TGG 0.528613 2_1:-65843429 None:intergenic
ATTTCTTTGACCATGGGAAG+GGG 0.529053 2_1:-65843273 None:intergenic
GCACTACACGGAAGCGGCAA+TGG 0.529430 2_1:+65843071 Msa0218580:CDS
TCTCAAACAAATTGCTGAAG+GGG 0.530198 2_1:+65843107 Msa0218580:CDS
AAGTCCCGAGGCAGCAGAGG+AGG 0.531648 2_1:+65843569 Msa0218580:CDS
CGAGGACCTGCACTCATCCA+TGG 0.534400 2_1:-65846663 None:intergenic
GTTCAGAGTAAGCTTGGCTG+GGG 0.535588 2_1:+65842155 Msa0218580:CDS
CAAAGTCAAGTAACGGAACA+AGG 0.536228 2_1:-65846599 None:intergenic
ATTCTCAAACAAATTGCTGA+AGG 0.536936 2_1:+65843105 Msa0218580:CDS
CATGGATGAGTGCAGGTCCT+CGG 0.537891 2_1:+65846664 Msa0218580:CDS
ACAGTGGTGAAAACTATGAC+AGG 0.544366 2_1:+65843979 Msa0218580:CDS
GGTTTGAGAAACCCTTCATA+GGG 0.544952 2_1:+65846993 Msa0218580:three_prime_UTR
TTGGAGTGAAATTGAGGGAA+AGG 0.545619 2_1:-65841898 None:intergenic
TGAGAAACCCTTCATAGGGT+AGG 0.545723 2_1:+65846997 Msa0218580:three_prime_UTR
ACTCGACTCCGGCAGATATG+TGG 0.548164 2_1:+65843901 Msa0218580:CDS
TCCTTCGACTTCAATGGCGG+AGG 0.550311 2_1:+65842019 Msa0218580:exon
TGGATGGAAGCCTATTACAA+TGG 0.552235 2_1:+65847031 Msa0218580:three_prime_UTR
AAACATGATAAAAGTTCGAA+TGG 0.554779 2_1:+65843483 Msa0218580:CDS
CTCCGTTAATAGCATCAGCA+TGG 0.557184 2_1:-65846713 None:intergenic
TTAGAACCTAGAAGAACCTC+AGG 0.563105 2_1:-65843876 None:intergenic
TTCTCAAACAAATTGCTGAA+GGG 0.564427 2_1:+65843106 Msa0218580:CDS
TGCTCAGCACTACACGGAAG+CGG 0.566332 2_1:+65843065 Msa0218580:CDS
ACTCATCCATGGATGAGTGC+AGG 0.567258 2_1:+65846657 Msa0218580:CDS
AAATTTCTTTGACCATGGGA+AGG 0.567519 2_1:-65843275 None:intergenic
GTCAAGACTGTATCCAAGAA+CGG 0.569523 2_1:+65843453 Msa0218580:CDS
GTGGATGAGAAAGATTGGGT+TGG 0.570002 2_1:-65841917 None:intergenic
GTGTAAGAAGATTGTCCCCA+AGG 0.570530 2_1:-65843221 None:intergenic
TAGCAAATTTCTTTGACCAT+GGG 0.571005 2_1:-65843279 None:intergenic
CCTAATATGCCTACCTTGCG+AGG 0.572307 2_1:-65846171 None:intergenic
GCAAAGGACCACATATCTGC+CGG 0.573521 2_1:-65843909 None:intergenic
GAGGCTGTGGAAGTTAGTAT+GGG 0.573693 2_1:+65846771 Msa0218580:CDS
GGTGGTGGATGAGAAAGATT+GGG 0.576553 2_1:-65841921 None:intergenic
TCGTGGTATTCCCCTTCCCA+TGG 0.577077 2_1:+65843263 Msa0218580:CDS
TTTACAAGAAGTGAAAGAAG+TGG 0.578789 2_1:-65847061 None:intergenic
ACAGTCTTGACTTTAGTGGT+TGG 0.580495 2_1:-65843441 None:intergenic
CTCAAAGCATATGCAAGCAA+AGG 0.581090 2_1:-65843925 None:intergenic
GATTACAGTTCGGAAGATGA+AGG 0.582493 2_1:+65842059 Msa0218580:CDS
TCAGGAACAAAGTCAAGTAA+CGG 0.586688 2_1:-65846606 None:intergenic
AGATGCGAGTGATTACAGTT+CGG 0.587171 2_1:+65842049 Msa0218580:CDS
GTGATTTGAGACACATTCGC+CGG 0.588620 2_1:+65846496 Msa0218580:CDS
TGATCTTAAGTGCAAGCTTG+TGG 0.588631 2_1:+65843785 Msa0218580:CDS
GTAGGGCAAGAGAAGCTGGA+TGG 0.592297 2_1:+65847015 Msa0218580:three_prime_UTR
TTAAGAAACAAAAGATGTAA+CGG 0.596342 2_1:-65847304 None:intergenic
TCTCGGGGTGATGCCTCGCA+AGG 0.596451 2_1:+65846158 Msa0218580:CDS
AATTGCTGAAGGGGATCTAG+AGG 0.602637 2_1:+65843116 Msa0218580:CDS
CCATCGGCGTAGCTGCACAT+TGG 0.604550 2_1:+65846849 Msa0218580:exon
GGAAGTCAGGTTTCTAGGAG+AGG 0.605679 2_1:+65843726 Msa0218580:CDS
TAGGCCCTGAATGCTTAAAG+TGG 0.607415 2_1:-65843167 None:intergenic
CCAATGTGCAGCTACGCCGA+TGG 0.609488 2_1:-65846849 None:intergenic
AAGGGAAAAGGACGAGCAGG+AGG 0.611497 2_1:+65846752 Msa0218580:CDS
GCATGGATGCTATTCACCGA+GGG 0.613638 2_1:-65846696 None:intergenic
TATTTGAAGAATAATGGTGG+TGG 0.615793 2_1:-65841936 None:intergenic
TAGTGGTTGGAAGTATAAGT+GGG 0.617001 2_1:-65843428 None:intergenic
TCCTCCGCCATTGAAGTCGA+AGG 0.617006 2_1:-65842020 None:intergenic
GTAAGACACTGAGCGGCCGT+TGG 0.620524 2_1:-65846636 None:intergenic
TGAAAACTATGACAGGGATG+AGG 0.621612 2_1:+65843986 Msa0218580:CDS
CCAATTGTAGAAAATGGTGA+AGG 0.622581 2_1:+65843636 Msa0218580:CDS
TTTCCAATCTACAAAACCAT+CGG 0.628317 2_1:+65846833 Msa0218580:CDS
CTAGAAACCTGACTTCCTTG+TGG 0.628911 2_1:-65843720 None:intergenic
AATCCAAACCCACCAAAACA+TGG 0.629227 2_1:-65843302 None:intergenic
AGGTTCTAAATACTCGACTC+CGG 0.631900 2_1:+65843890 Msa0218580:CDS
TAATCCTTCGACTTCAATGG+CGG 0.636314 2_1:+65842016 Msa0218580:exon
ACCGAGGGCTCAAGAGTCCG+AGG 0.638849 2_1:-65846681 None:intergenic
ACATTGAACATCATGCTCCA+AGG 0.639562 2_1:-65846918 None:intergenic
AGCTCAGAAGGAAAGTCCCG+AGG 0.651825 2_1:+65843557 Msa0218580:CDS
GTGCACTCTATTGAGTGTGA+AGG 0.658270 2_1:-65847103 None:intergenic
ATCTATTTGAAGAATAATGG+TGG 0.661720 2_1:-65841939 None:intergenic
TGTTCCTGAAAAGAGACCAA+CGG 0.664722 2_1:+65846620 Msa0218580:CDS
GAAGAGTGCTCAGCACTACA+CGG 0.666377 2_1:+65843059 Msa0218580:CDS
CAAACGAGGTGGTTATCATG+CGG 0.669550 2_1:+65842094 Msa0218580:CDS
ATTGATGATGGAGCTTCTCG+GGG 0.671822 2_1:+65846143 Msa0218580:CDS
TTCGGAAGATGAAGGAACTG+AGG 0.673927 2_1:+65842067 Msa0218580:CDS
CAGTGGTGAAAACTATGACA+GGG 0.675870 2_1:+65843980 Msa0218580:CDS
ATCAAGTATAGTGATTATCG+TGG 0.676361 2_1:+65843246 Msa0218580:CDS
GAAACTAAGGATGTTCCACA+AGG 0.679404 2_1:+65843705 Msa0218580:CDS
TTACAAATGATATCCAGACT+AGG 0.679700 2_1:+65843841 Msa0218580:CDS
AGGCTGTGGAAGTTAGTATG+GGG 0.683437 2_1:+65846772 Msa0218580:CDS
AGCATGGATGCTATTCACCG+AGG 0.701969 2_1:-65846697 None:intergenic
TAGGCAGTATAGATGTCCTG+AGG 0.713543 2_1:+65843860 Msa0218580:CDS
GGAACTGAGGATTACAAACG+AGG 0.716479 2_1:+65842080 Msa0218580:CDS
ACTGAGGATTACAAACGAGG+TGG 0.729665 2_1:+65842083 Msa0218580:CDS
TGGATGAGTAAGACACTGAG+CGG 0.731118 2_1:-65846643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACTTGAAATTTGAAAT+AGG - chr2_1:65841969-65841988 None:intergenic 15.0%
!! ATAAATCAAAACAATGAAAA+GGG - chr2_1:65842231-65842250 None:intergenic 15.0%
!! AATAAATCAAAACAATGAAA+AGG - chr2_1:65842232-65842251 None:intergenic 15.0%
!!! TTTTCATTGTTTTGATTTAT+TGG + chr2_1:65842231-65842250 Msa0218580:intron 15.0%
!!! TTTTTCTTGAAACTAATATA+AGG + chr2_1:65842395-65842414 Msa0218580:intron 15.0%
!!! TGAACTTCAAAATAAATTTT+TGG + chr2_1:65844019-65844038 Msa0218580:intron 15.0%
!! AAAAATAAGAAACATTTAGA+GGG + chr2_1:65844106-65844125 Msa0218580:intron 15.0%
!!! AAAAAATACTACTTTTAACT+TGG + chr2_1:65844827-65844846 Msa0218580:intron 15.0%
!!! TACTTTTCGTTTTTAAATTA+CGG - chr2_1:65845473-65845492 None:intergenic 15.0%
!!! TTCAATTATTTCTAAGTTAT+TGG + chr2_1:65845962-65845981 Msa0218580:intron 15.0%
!!! TCAATTATTTCTAAGTTATT+GGG + chr2_1:65845963-65845982 Msa0218580:intron 15.0%
!!! GAGAATATTTTATTGTTTTT+TGG + chr2_1:65847147-65847166 Msa0218580:three_prime_UTR 15.0%
!!! TATCCATAATGTTATTTTTT+AGG + chr2_1:65847207-65847226 Msa0218580:three_prime_UTR 15.0%
!! TGAATCTATTTGAAGAATAA+TGG - chr2_1:65841945-65841964 None:intergenic 20.0%
!! TAAATCAAAACAATGAAAAG+GGG - chr2_1:65842230-65842249 None:intergenic 20.0%
!!! ATTATTGAGTTTAGTGTTTT+TGG + chr2_1:65842289-65842308 Msa0218580:intron 20.0%
!!! TTATTGAGTTTAGTGTTTTT+GGG + chr2_1:65842290-65842309 Msa0218580:intron 20.0%
!!! ATGCTTTTTCTTGTTTTATA+TGG + chr2_1:65842363-65842382 Msa0218580:intron 20.0%
!! TTGAAACTAATATAAGGAAT+AGG + chr2_1:65842401-65842420 Msa0218580:intron 20.0%
!! TCATATATATTGTGTGTTAT+TGG + chr2_1:65842893-65842912 Msa0218580:intron 20.0%
!!! TTTATTTTGAAGTTCAAAAC+AGG - chr2_1:65844015-65844034 None:intergenic 20.0%
!! TTGTTTATATATGTTGTCTT+AGG + chr2_1:65844067-65844086 Msa0218580:intron 20.0%
!! GAAAAATAAGAAACATTTAG+AGG + chr2_1:65844105-65844124 Msa0218580:intron 20.0%
!!! ACATTTGTTTGTTAAAAAGT+TGG + chr2_1:65844130-65844149 Msa0218580:intron 20.0%
!!! AATTCTAAGACAAACTATTT+TGG - chr2_1:65844187-65844206 None:intergenic 20.0%
!!! AAATAGTTTGTCTTAGAATT+TGG + chr2_1:65844187-65844206 Msa0218580:intron 20.0%
!!! AATAGTTTGTCTTAGAATTT+GGG + chr2_1:65844188-65844207 Msa0218580:intron 20.0%
!! CTAAAAATATGTCTATAAGT+GGG - chr2_1:65844261-65844280 None:intergenic 20.0%
!! AAGTTATTAGTAAAAAAACG+TGG - chr2_1:65844782-65844801 None:intergenic 20.0%
!!! ATAAAGTGAAGACATTTTTT+AGG + chr2_1:65844903-65844922 Msa0218580:intron 20.0%
!! ATTATATAAACAAACTGACT+AGG + chr2_1:65844936-65844955 Msa0218580:intron 20.0%
!! CTTTATAACTCAATATATCT+AGG + chr2_1:65845332-65845351 Msa0218580:intron 20.0%
!!! GCCTATACTTTTTTTTTATT+GGG + chr2_1:65845907-65845926 Msa0218580:intron 20.0%
!!! CCTATACTTTTTTTTTATTG+GGG + chr2_1:65845908-65845927 Msa0218580:intron 20.0%
!!! CTATACTTTTTTTTTATTGG+GGG + chr2_1:65845909-65845928 Msa0218580:intron 20.0%
!!! CAATTATTTCTAAGTTATTG+GGG + chr2_1:65845964-65845983 Msa0218580:intron 20.0%
!!! AATTATTTCTAAGTTATTGG+GGG + chr2_1:65845965-65845984 Msa0218580:intron 20.0%
!!! ATCAATATGCAATATTTCTA+AGG - chr2_1:65846006-65846025 None:intergenic 20.0%
!!! GATTTTAAAATTTACTCTTC+AGG + chr2_1:65846110-65846129 Msa0218580:intron 20.0%
!! AGGATAATATGTATCTATAA+TGG - chr2_1:65846315-65846334 None:intergenic 20.0%
!!! AAATAATTGTTCAAGTTTTG+AGG - chr2_1:65846423-65846442 None:intergenic 20.0%
!!! TTTTATATGGTAAGTTTTGA+TGG + chr2_1:65846894-65846913 Msa0218580:three_prime_UTR 20.0%
!! ACTCCTAAAAAATAACATTA+TGG - chr2_1:65847213-65847232 None:intergenic 20.0%
! ATCTATTTGAAGAATAATGG+TGG - chr2_1:65841942-65841961 None:intergenic 25.0%
! ATTAAGCTTCAAACTAGTAT+TGG - chr2_1:65842000-65842019 None:intergenic 25.0%
! TCGAAACATGTAATAATTTG+AGG + chr2_1:65842485-65842504 Msa0218580:intron 25.0%
! TTTAATGTAACTACAAGTCT+CGG + chr2_1:65842519-65842538 Msa0218580:intron 25.0%
! TCTCAAATTATTAGCTATGT+CGG - chr2_1:65842655-65842674 None:intergenic 25.0%
! ATTGAAAACTCTACTAACAA+TGG + chr2_1:65842995-65843014 Msa0218580:intron 25.0%
! TTGAAAACTCTACTAACAAT+GGG + chr2_1:65842996-65843015 Msa0218580:intron 25.0%
! AAACATGATAAAAGTTCGAA+TGG + chr2_1:65843483-65843502 Msa0218580:CDS 25.0%
! GGTAAAATTGATAAGTTATG+TGG + chr2_1:65844161-65844180 Msa0218580:intron 25.0%
!! ATAGTTTGTCTTAGAATTTG+GGG + chr2_1:65844189-65844208 Msa0218580:intron 25.0%
! CTAACTTAAAACTACAAAAC+CGG + chr2_1:65844214-65844233 Msa0218580:intron 25.0%
! CCTAAAAATATGTCTATAAG+TGG - chr2_1:65844262-65844281 None:intergenic 25.0%
!! CCACTTATAGACATATTTTT+AGG + chr2_1:65844259-65844278 Msa0218580:intron 25.0%
!!! TCTGATACCATTTTAGAATT+TGG + chr2_1:65844393-65844412 Msa0218580:intron 25.0%
!!! CTGATACCATTTTAGAATTT+GGG + chr2_1:65844394-65844413 Msa0218580:intron 25.0%
!! ACTAGTTTGAGATATTAGTA+AGG + chr2_1:65844423-65844442 Msa0218580:intron 25.0%
!! TTTTTGATCTAGTAAACATG+AGG + chr2_1:65844467-65844486 Msa0218580:intron 25.0%
!! TTTTGATCTAGTAAACATGA+GGG + chr2_1:65844468-65844487 Msa0218580:intron 25.0%
! AATCTAAACACAGTGAATTT+AGG - chr2_1:65844554-65844573 None:intergenic 25.0%
!!! TTCATGCTTTTGAGTTATAT+AGG + chr2_1:65844609-65844628 Msa0218580:intron 25.0%
!! CATAAGATACTTTTCCAAAA+GGG - chr2_1:65844692-65844711 None:intergenic 25.0%
!!! TTGAACTTGTTTTTGTTTCT+TGG + chr2_1:65844976-65844995 Msa0218580:intron 25.0%
! AAATTTACTAAAACTCAGAC+TGG - chr2_1:65845070-65845089 None:intergenic 25.0%
!! GTAAATTTTCACAATCTTTC+TGG + chr2_1:65845082-65845101 Msa0218580:intron 25.0%
!!! AGATTGAGTTATTTTAGAAG+AGG + chr2_1:65845165-65845184 Msa0218580:intron 25.0%
!! ACTGTGTATTTCATTTTACA+TGG - chr2_1:65845371-65845390 None:intergenic 25.0%
! GTACTCAAAAAACATACAAT+CGG - chr2_1:65845411-65845430 None:intergenic 25.0%
! ATCTCAATATTATCAAGATC+TGG + chr2_1:65845885-65845904 Msa0218580:intron 25.0%
!!! GGCCTATACTTTTTTTTTAT+TGG + chr2_1:65845906-65845925 Msa0218580:intron 25.0%
!! CCCCAATAAAAAAAAAGTAT+AGG - chr2_1:65845911-65845930 None:intergenic 25.0%
! GAAATAATTGAACTGTACAA+TGG - chr2_1:65845954-65845973 None:intergenic 25.0%
!! GCAATATTTCTAAGGAAATA+AGG - chr2_1:65845998-65846017 None:intergenic 25.0%
! CTTACCATATAAAAAGTAAC+AGG - chr2_1:65846888-65846907 None:intergenic 25.0%
! TTATAAGCATTATGTGCAAA+TGG + chr2_1:65846951-65846970 Msa0218580:three_prime_UTR 25.0%
! TATAAGCATTATGTGCAAAT+GGG + chr2_1:65846952-65846971 Msa0218580:three_prime_UTR 25.0%
!!! TTTTTGAGTTGTGTTTGGTT+TGG - chr2_1:65841844-65841863 None:intergenic 30.0%
TTCAGTGAATGGGAAAATTA+GGG - chr2_1:65841867-65841886 None:intergenic 30.0%
ATTCAGTGAATGGGAAAATT+AGG - chr2_1:65841868-65841887 None:intergenic 30.0%
TATTTGAAGAATAATGGTGG+TGG - chr2_1:65841939-65841958 None:intergenic 30.0%
! ATTGGTGACACTTTCAAAAA+TGG + chr2_1:65842122-65842141 Msa0218580:CDS 30.0%
! TTGGTGACACTTTCAAAAAT+GGG + chr2_1:65842123-65842142 Msa0218580:CDS 30.0%
!!! TTAGTGTTTTTGGGTTATGA+AGG + chr2_1:65842299-65842318 Msa0218580:intron 30.0%
!!! TAGTGTTTTTGGGTTATGAA+GGG + chr2_1:65842300-65842319 Msa0218580:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG + chr2_1:65842686-65842705 Msa0218580:intron 30.0%
GAAACTAGAAAGAGAATCAA+GGG - chr2_1:65842861-65842880 None:intergenic 30.0%
AGAAACTAGAAAGAGAATCA+AGG - chr2_1:65842862-65842881 None:intergenic 30.0%
!! CTCTTTCTAGTTTCTTTAGT+TGG + chr2_1:65842867-65842886 Msa0218580:intron 30.0%
!! TTTCTAGTTTCTTTAGTTGG+TGG + chr2_1:65842870-65842889 Msa0218580:intron 30.0%
! GTTATTGGAGTTCTTTTCAT+TGG + chr2_1:65842908-65842927 Msa0218580:intron 30.0%
TGAAAACTCTACTAACAATG+GGG + chr2_1:65842997-65843016 Msa0218580:intron 30.0%
! AGCACTCTTCTGAATTTTTA+AGG - chr2_1:65843049-65843068 None:intergenic 30.0%
ATTCTCAAACAAATTGCTGA+AGG + chr2_1:65843105-65843124 Msa0218580:CDS 30.0%
TTCTCAAACAAATTGCTGAA+GGG + chr2_1:65843106-65843125 Msa0218580:CDS 30.0%
! TGTATGGTTTTTGAATTCCT+TGG + chr2_1:65843204-65843223 Msa0218580:CDS 30.0%
! GTATGGTTTTTGAATTCCTT+GGG + chr2_1:65843205-65843224 Msa0218580:CDS 30.0%
! TATGGTTTTTGAATTCCTTG+GGG + chr2_1:65843206-65843225 Msa0218580:CDS 30.0%
ATCAAGTATAGTGATTATCG+TGG + chr2_1:65843246-65843265 Msa0218580:CDS 30.0%
TAGCAAATTTCTTTGACCAT+GGG - chr2_1:65843282-65843301 None:intergenic 30.0%
!!! AGAAATTTGCTACCATGTTT+TGG + chr2_1:65843290-65843309 Msa0218580:CDS 30.0%
!!! GATTTTCTAGGATCTTTAGA+TGG - chr2_1:65843402-65843421 None:intergenic 30.0%
TCTAAAGATCCTAGAAAATC+AGG + chr2_1:65843402-65843421 Msa0218580:CDS 30.0%
! CGAACTTTTATCATGTTTTG+TGG - chr2_1:65843481-65843500 None:intergenic 30.0%
TTACTAGAATCATCTTGTTC+AGG - chr2_1:65843606-65843625 None:intergenic 30.0%
GTGAAACCAATTGTAGAAAA+TGG + chr2_1:65843630-65843649 Msa0218580:CDS 30.0%
TTACAAATGATATCCAGACT+AGG + chr2_1:65843841-65843860 Msa0218580:CDS 30.0%
GTTAAAAAGTTGGATCAAGT+TGG + chr2_1:65844140-65844159 Msa0218580:intron 30.0%
!!! CGGTTTTGTAGTTTTAAGTT+AGG - chr2_1:65844216-65844235 None:intergenic 30.0%
! CCTTAACCCAAATTCTAAAA+TGG - chr2_1:65844403-65844422 None:intergenic 30.0%
!!! CCATTTTAGAATTTGGGTTA+AGG + chr2_1:65844400-65844419 Msa0218580:intron 30.0%
GTTTACTAGATCAAAAAGCA+AGG - chr2_1:65844464-65844483 None:intergenic 30.0%
! ATTTCTATCTTTTGCCCTTT+TGG + chr2_1:65844675-65844694 Msa0218580:intron 30.0%
! CCATAAGATACTTTTCCAAA+AGG - chr2_1:65844693-65844712 None:intergenic 30.0%
!!! CCTTTTGGAAAAGTATCTTA+TGG + chr2_1:65844690-65844709 Msa0218580:intron 30.0%
AACACAAGACAATTTCTGAT+TGG - chr2_1:65844744-65844763 None:intergenic 30.0%
CAGAAATTGTCTTGTGTTAA+TGG + chr2_1:65844746-65844765 Msa0218580:intron 30.0%
GGTCATTGTGATTTAATCTA+TGG + chr2_1:65844848-65844867 Msa0218580:intron 30.0%
! TGAAAAGCGAAAAGTTTTCA+TGG - chr2_1:65845214-65845233 None:intergenic 30.0%
! ATTTCATTTTACATGGCAGA+AGG - chr2_1:65845364-65845383 None:intergenic 30.0%
! ATTTTGTCGTCAGTAGTATA+GGG - chr2_1:65845551-65845570 None:intergenic 30.0%
! TATTTTGTCGTCAGTAGTAT+AGG - chr2_1:65845552-65845571 None:intergenic 30.0%
TTGAGATATTAGTAGAGTCA+AGG - chr2_1:65845872-65845891 None:intergenic 30.0%
! TGTATTTCAGACTTTTCAGT+GGG - chr2_1:65846045-65846064 None:intergenic 30.0%
GGAGTAACTGAATAATATGT+GGG - chr2_1:65846294-65846313 None:intergenic 30.0%
TGGAGTAACTGAATAATATG+TGG - chr2_1:65846295-65846314 None:intergenic 30.0%
AGAAAGAGAGTAGATACAAT+AGG - chr2_1:65846342-65846361 None:intergenic 30.0%
! TATTTTGTTCAGATTGCTCT+TGG + chr2_1:65846438-65846457 Msa0218580:intron 30.0%
TTTCCAATCTACAAAACCAT+CGG + chr2_1:65846833-65846852 Msa0218580:CDS 30.0%
!!! GCAACCTGTTACTTTTTATA+TGG + chr2_1:65846881-65846900 Msa0218580:three_prime_UTR 30.0%
TTTACAAGAAGTGAAAGAAG+TGG - chr2_1:65847064-65847083 None:intergenic 30.0%
! TTCTTGTAAAAGTGTGTAGA+AGG + chr2_1:65847074-65847093 Msa0218580:three_prime_UTR 30.0%
GATAATGAGCATCTAATCTA+GGG - chr2_1:65847191-65847210 None:intergenic 30.0%
!!! TTGTTGTTTTTGTTGTTGCC+GGG - chr2_1:65841818-65841837 None:intergenic 35.0%
!!! CTTGTTGTTTTTGTTGTTGC+CGG - chr2_1:65841819-65841838 None:intergenic 35.0%
!!! TAGGGTTTTTGAGTTGTGTT+TGG - chr2_1:65841849-65841868 None:intergenic 35.0%
AAACCTCGAATTCAGTGAAT+GGG - chr2_1:65841877-65841896 None:intergenic 35.0%
AAAACCTCGAATTCAGTGAA+TGG - chr2_1:65841878-65841897 None:intergenic 35.0%
TATGTTGTTCAGAGTAAGCT+TGG + chr2_1:65842149-65842168 Msa0218580:CDS 35.0%
!!! AGTGTTTTTGGGTTATGAAG+GGG + chr2_1:65842301-65842320 Msa0218580:intron 35.0%
TAGGTTGTGTGTGTTTAGTT+TGG + chr2_1:65842793-65842812 Msa0218580:intron 35.0%
! ACTATGTTTGTTGAAAGCCT+AGG + chr2_1:65842949-65842968 Msa0218580:intron 35.0%
TCTCAAACAAATTGCTGAAG+GGG + chr2_1:65843107-65843126 Msa0218580:CDS 35.0%
! GAAATGTGTTGTGAAGCTTT+TGG + chr2_1:65843143-65843162 Msa0218580:CDS 35.0%
ATACAAACATGCTGACCATT+AGG - chr2_1:65843189-65843208 None:intergenic 35.0%
TAATGGTCAGCATGTTTGTA+TGG + chr2_1:65843188-65843207 Msa0218580:CDS 35.0%
AATTTCTTTGACCATGGGAA+GGG - chr2_1:65843277-65843296 None:intergenic 35.0%
AAATTTCTTTGACCATGGGA+AGG - chr2_1:65843278-65843297 None:intergenic 35.0%
GTAGCAAATTTCTTTGACCA+TGG - chr2_1:65843283-65843302 None:intergenic 35.0%
!!! AATTTGCTACCATGTTTTGG+TGG + chr2_1:65843293-65843312 Msa0218580:CDS 35.0%
!!! ATTTGCTACCATGTTTTGGT+GGG + chr2_1:65843294-65843313 Msa0218580:CDS 35.0%
! GAGACAAGCAAAACATTTTC+TGG - chr2_1:65843369-65843388 None:intergenic 35.0%
GGATCTTTAGATGGATCTAT+TGG - chr2_1:65843393-65843412 None:intergenic 35.0%
! TAGTGGTTGGAAGTATAAGT+GGG - chr2_1:65843431-65843450 None:intergenic 35.0%
! TTAGTGGTTGGAAGTATAAG+TGG - chr2_1:65843432-65843451 None:intergenic 35.0%
!!! CATCTTCTTTTTCTGGTTCT+TGG - chr2_1:65843517-65843536 None:intergenic 35.0%
AGAACCAGAAAAAGAAGATG+CGG + chr2_1:65843517-65843536 Msa0218580:CDS 35.0%
! TTTTCCGCATCTTCTTTTTC+TGG - chr2_1:65843524-65843543 None:intergenic 35.0%
GAAAAAGAAGATGCGGAAAA+AGG + chr2_1:65843524-65843543 Msa0218580:CDS 35.0%
! CCTTCACCATTTTCTACAAT+TGG - chr2_1:65843639-65843658 None:intergenic 35.0%
CCAATTGTAGAAAATGGTGA+AGG + chr2_1:65843636-65843655 Msa0218580:CDS 35.0%
TCTTTACTTGTGGGACTATT+AGG - chr2_1:65843666-65843685 None:intergenic 35.0%
! GCTGATTCATCTTTACTTGT+GGG - chr2_1:65843675-65843694 None:intergenic 35.0%
!! TGCTGATTCATCTTTACTTG+TGG - chr2_1:65843676-65843695 None:intergenic 35.0%
!! AGCAATGACTTCTGAAACTA+AGG + chr2_1:65843692-65843711 Msa0218580:CDS 35.0%
!! TGGATTTTGGAAATGCTTGT+TGG + chr2_1:65843805-65843824 Msa0218580:CDS 35.0%
GAGATATTAGTAAGGACGTT+AGG + chr2_1:65844431-65844450 Msa0218580:intron 35.0%
! AAACATGAGGGAAGTTTTTG+TGG + chr2_1:65844480-65844499 Msa0218580:intron 35.0%
! TGGAAGCTATTTGACTTTGA+TGG + chr2_1:65844516-65844535 Msa0218580:intron 35.0%
! GGAAGCTATTTGACTTTGAT+GGG + chr2_1:65844517-65844536 Msa0218580:intron 35.0%
TGGAATATTATGAGCGTGTT+TGG + chr2_1:65844996-65845015 Msa0218580:intron 35.0%
ATATTATGAGCGTGTTTGGA+AGG + chr2_1:65845000-65845019 Msa0218580:intron 35.0%
TATTATGAGCGTGTTTGGAA+GGG + chr2_1:65845001-65845020 Msa0218580:intron 35.0%
AACTCAATATATCTAGGCAG+AGG + chr2_1:65845338-65845357 Msa0218580:intron 35.0%
AGTAGTATAGGGAAGTCTAA+GGG - chr2_1:65845540-65845559 None:intergenic 35.0%
CCTATAACGAACTTTATCGT+GGG - chr2_1:65845584-65845603 None:intergenic 35.0%
ACCTATAACGAACTTTATCG+TGG - chr2_1:65845585-65845604 None:intergenic 35.0%
! ACATGCTTACGTAGCAATTT+TGG + chr2_1:65845754-65845773 Msa0218580:intron 35.0%
! CATGCTTACGTAGCAATTTT+GGG + chr2_1:65845755-65845774 Msa0218580:intron 35.0%
! ATGCTTACGTAGCAATTTTG+GGG + chr2_1:65845756-65845775 Msa0218580:intron 35.0%
! TCTAGAGTAAACCACCAAAT+TGG + chr2_1:65845814-65845833 Msa0218580:intron 35.0%
TACAAAGACATGGACCAATT+TGG - chr2_1:65845831-65845850 None:intergenic 35.0%
GAGAGTGAATTACAAAGACA+TGG - chr2_1:65845841-65845860 None:intergenic 35.0%
! CTGTATTTCAGACTTTTCAG+TGG - chr2_1:65846046-65846065 None:intergenic 35.0%
! AAAAGTCTGAAATACAGCTG+TGG + chr2_1:65846049-65846068 Msa0218580:intron 35.0%
ATTTACTCTTCAGGATCATC+TGG + chr2_1:65846119-65846138 Msa0218580:intron 35.0%
TTTGCATGTTGATATGCACA+AGG + chr2_1:65846232-65846251 Msa0218580:intron 35.0%
GAGTAGATACAATAGGATCA+AGG - chr2_1:65846335-65846354 None:intergenic 35.0%
AGATCTATTGAAAAAGTCCC+GGG - chr2_1:65846475-65846494 None:intergenic 35.0%
CAGATCTATTGAAAAAGTCC+CGG - chr2_1:65846476-65846495 None:intergenic 35.0%
!! GCCTATTACTAAGGTTTTGA+CGG + chr2_1:65846530-65846549 Msa0218580:CDS 35.0%
TCCGTCAAAACCTTAGTAAT+AGG - chr2_1:65846534-65846553 None:intergenic 35.0%
TCAGGAACAAAGTCAAGTAA+CGG - chr2_1:65846609-65846628 None:intergenic 35.0%
ATCCATGCTGATGCTATTAA+CGG + chr2_1:65846711-65846730 Msa0218580:CDS 35.0%
AGAAAAGCCTGGAAAGTTAA+GGG + chr2_1:65846734-65846753 Msa0218580:CDS 35.0%
TGGAAATCTTTGAGTGTCTT+TGG - chr2_1:65846819-65846838 None:intergenic 35.0%
TGGCATAACTCCATTGTAAT+AGG - chr2_1:65847044-65847063 None:intergenic 35.0%
GGATAATGAGCATCTAATCT+AGG - chr2_1:65847192-65847211 None:intergenic 35.0%
TTTCCCATTCACTGAATTCG+AGG + chr2_1:65841871-65841890 Msa0218580:five_prime_UTR 40.0%
TTGGAGTGAAATTGAGGGAA+AGG - chr2_1:65841901-65841920 None:intergenic 40.0%
!! TTGGGTTGGAGTGAAATTGA+GGG - chr2_1:65841906-65841925 None:intergenic 40.0%
!! ATTGGGTTGGAGTGAAATTG+AGG - chr2_1:65841907-65841926 None:intergenic 40.0%
GCTTAATCCTTCGACTTCAA+TGG + chr2_1:65842013-65842032 Msa0218580:exon 40.0%
TAATCCTTCGACTTCAATGG+CGG + chr2_1:65842016-65842035 Msa0218580:exon 40.0%
AGATGCGAGTGATTACAGTT+CGG + chr2_1:65842049-65842068 Msa0218580:CDS 40.0%
GATTACAGTTCGGAAGATGA+AGG + chr2_1:65842059-65842078 Msa0218580:CDS 40.0%
!!! GGGGTCATTTTTCAACTGTT+TGG + chr2_1:65842174-65842193 Msa0218580:CDS 40.0%
ACGAAGTAGCGACATTTACA+CGG + chr2_1:65842439-65842458 Msa0218580:intron 40.0%
ATTTACACGGACACCAGATA+TGG + chr2_1:65842452-65842471 Msa0218580:intron 40.0%
TATGTAGCACCAATGAAGCA+CGG - chr2_1:65842775-65842794 None:intergenic 40.0%
TTGGACCACTTTAAGCATTC+AGG + chr2_1:65843162-65843181 Msa0218580:CDS 40.0%
TGGACCACTTTAAGCATTCA+GGG + chr2_1:65843163-65843182 Msa0218580:CDS 40.0%
TTTAAGCATTCAGGGCCTAA+TGG + chr2_1:65843171-65843190 Msa0218580:CDS 40.0%
ATTTCTTTGACCATGGGAAG+GGG - chr2_1:65843276-65843295 None:intergenic 40.0%
AATCCAAACCCACCAAAACA+TGG - chr2_1:65843305-65843324 None:intergenic 40.0%
ACAGTCTTGACTTTAGTGGT+TGG - chr2_1:65843444-65843463 None:intergenic 40.0%
GGATACAGTCTTGACTTTAG+TGG - chr2_1:65843448-65843467 None:intergenic 40.0%
GTCAAGACTGTATCCAAGAA+CGG + chr2_1:65843453-65843472 Msa0218580:CDS 40.0%
TCAAGACTGTATCCAAGAAC+GGG + chr2_1:65843454-65843473 Msa0218580:CDS 40.0%
GAAACTAAGGATGTTCCACA+AGG + chr2_1:65843705-65843724 Msa0218580:CDS 40.0%
TGATCTTAAGTGCAAGCTTG+TGG + chr2_1:65843785-65843804 Msa0218580:CDS 40.0%
! AAGTGCAAGCTTGTGGATTT+TGG + chr2_1:65843792-65843811 Msa0218580:CDS 40.0%
TTAGAACCTAGAAGAACCTC+AGG - chr2_1:65843879-65843898 None:intergenic 40.0%
!! AGGTTCTAAATACTCGACTC+CGG + chr2_1:65843890-65843909 Msa0218580:CDS 40.0%
CTCAAAGCATATGCAAGCAA+AGG - chr2_1:65843928-65843947 None:intergenic 40.0%
ATCAAAAAGAACATCGCCAG+TGG - chr2_1:65843955-65843974 None:intergenic 40.0%
! GTTCTTTTTGATCCTCACAG+TGG + chr2_1:65843963-65843982 Msa0218580:CDS 40.0%
! TCATAGTTTTCACCACTGTG+AGG - chr2_1:65843978-65843997 None:intergenic 40.0%
ACAGTGGTGAAAACTATGAC+AGG + chr2_1:65843979-65843998 Msa0218580:CDS 40.0%
CAGTGGTGAAAACTATGACA+GGG + chr2_1:65843980-65843999 Msa0218580:CDS 40.0%
TGAAAACTATGACAGGGATG+AGG + chr2_1:65843986-65844005 Msa0218580:CDS 40.0%
!! AACTACAAAACCGGCTTGTA+AGG + chr2_1:65844223-65844242 Msa0218580:intron 40.0%
!! TAAAAGTACCACATCGGATG+AGG - chr2_1:65844290-65844309 None:intergenic 40.0%
!! GGGTGTTAAAAGTACCACAT+CGG - chr2_1:65844296-65844315 None:intergenic 40.0%
!!! TTTGTGGTGATGGCATGTTT+TGG + chr2_1:65844496-65844515 Msa0218580:intron 40.0%
CAGTAGTATAGGGAAGTCTA+AGG - chr2_1:65845541-65845560 None:intergenic 40.0%
CCCACGATAAAGTTCGTTAT+AGG + chr2_1:65845581-65845600 Msa0218580:intron 40.0%
TTTCGTCTACTCCTTGTTAC+TGG + chr2_1:65845633-65845652 Msa0218580:intron 40.0%
TACTCCTTGTTACTGGAGAT+AGG + chr2_1:65845640-65845659 Msa0218580:intron 40.0%
TGTTCCTATCTCCAGTAACA+AGG - chr2_1:65845647-65845666 None:intergenic 40.0%
GTTACTGGAGATAGGAACAA+AGG + chr2_1:65845648-65845667 Msa0218580:intron 40.0%
GGAGATAGGAACAAAGGTTA+AGG + chr2_1:65845654-65845673 Msa0218580:intron 40.0%
AAAGACATGGACCAATTTGG+TGG - chr2_1:65845828-65845847 None:intergenic 40.0%
TTTGTTCAGATTGCTCTTGG+CGG + chr2_1:65846441-65846460 Msa0218580:intron 40.0%
!!! CGGGACTTTTTCAATAGATC+TGG + chr2_1:65846474-65846493 Msa0218580:CDS 40.0%
! CAAAGTCAAGTAACGGAACA+AGG - chr2_1:65846602-65846621 None:intergenic 40.0%
TGTTCCTGAAAAGAGACCAA+CGG + chr2_1:65846620-65846639 Msa0218580:CDS 40.0%
GAGAAAAGCCTGGAAAGTTA+AGG + chr2_1:65846733-65846752 Msa0218580:CDS 40.0%
! TCCTTTTCCCTTAACTTTCC+AGG - chr2_1:65846744-65846763 None:intergenic 40.0%
ATGGGGAATATGACCATTGA+TGG + chr2_1:65846789-65846808 Msa0218580:CDS 40.0%
!! TGTCTTTGGAGTTCCATCAA+TGG - chr2_1:65846805-65846824 None:intergenic 40.0%
!! TGGTAAGTTTTGATGGTCCT+TGG + chr2_1:65846901-65846920 Msa0218580:three_prime_UTR 40.0%
ACATTGAACATCATGCTCCA+AGG - chr2_1:65846921-65846940 None:intergenic 40.0%
GCAAATGGGTCATACTTAAG+AGG + chr2_1:65846966-65846985 Msa0218580:three_prime_UTR 40.0%
GGGTCATACTTAAGAGGTTA+TGG + chr2_1:65846972-65846991 Msa0218580:three_prime_UTR 40.0%
TGGTTTGAGAAACCCTTCAT+AGG + chr2_1:65846992-65847011 Msa0218580:three_prime_UTR 40.0%
GGTTTGAGAAACCCTTCATA+GGG + chr2_1:65846993-65847012 Msa0218580:three_prime_UTR 40.0%
TGGATGGAAGCCTATTACAA+TGG + chr2_1:65847031-65847050 Msa0218580:three_prime_UTR 40.0%
GTGGATGAGAAAGATTGGGT+TGG - chr2_1:65841920-65841939 None:intergenic 45.0%
!! GGTGGTGGATGAGAAAGATT+GGG - chr2_1:65841924-65841943 None:intergenic 45.0%
!! TGGTGGTGGATGAGAAAGAT+TGG - chr2_1:65841925-65841944 None:intergenic 45.0%
TTCGGAAGATGAAGGAACTG+AGG + chr2_1:65842067-65842086 Msa0218580:CDS 45.0%
GGAACTGAGGATTACAAACG+AGG + chr2_1:65842080-65842099 Msa0218580:CDS 45.0%
ACTGAGGATTACAAACGAGG+TGG + chr2_1:65842083-65842102 Msa0218580:CDS 45.0%
CAAACGAGGTGGTTATCATG+CGG + chr2_1:65842094-65842113 Msa0218580:CDS 45.0%
GGTTATCATGCGGTTCAGAT+TGG + chr2_1:65842104-65842123 Msa0218580:CDS 45.0%
TTGTTCAGAGTAAGCTTGGC+TGG + chr2_1:65842153-65842172 Msa0218580:CDS 45.0%
TGTTCAGAGTAAGCTTGGCT+GGG + chr2_1:65842154-65842173 Msa0218580:CDS 45.0%
! TTTCAACTGTTTGGCTCGCT+TGG + chr2_1:65842183-65842202 Msa0218580:CDS 45.0%
! TTCAACTGTTTGGCTCGCTT+GGG + chr2_1:65842184-65842203 Msa0218580:CDS 45.0%
CGCTTGGGATACTCAGAAAT+TGG + chr2_1:65842199-65842218 Msa0218580:CDS 45.0%
!!! GTTTTTGGGTTATGAAGGGG+TGG + chr2_1:65842304-65842323 Msa0218580:intron 45.0%
CGACATGTCATTGCCATATC+TGG - chr2_1:65842468-65842487 None:intergenic 45.0%
GACCAATGTCCAACACATGT+CGG - chr2_1:65842559-65842578 None:intergenic 45.0%
GACATTGGTCACACCTTTGA+TGG + chr2_1:65842569-65842588 Msa0218580:intron 45.0%
! CACACCTTTGATGGAAGTGT+TGG + chr2_1:65842578-65842597 Msa0218580:intron 45.0%
GTGCCTATGAAGCATGGATA+CGG + chr2_1:65842600-65842619 Msa0218580:intron 45.0%
TGTCCGTATCCATGCTTCAT+AGG - chr2_1:65842606-65842625 None:intergenic 45.0%
!! TACAAGTGTCGGTGTTGTGT+CGG + chr2_1:65842697-65842716 Msa0218580:intron 45.0%
!! GTGCTTCATTGGTGCTACAT+AGG + chr2_1:65842774-65842793 Msa0218580:intron 45.0%
TCAGAGCATGTGTGTTACCT+AGG - chr2_1:65842969-65842988 None:intergenic 45.0%
AATTGCTGAAGGGGATCTAG+AGG + chr2_1:65843116-65843135 Msa0218580:CDS 45.0%
TAGGCCCTGAATGCTTAAAG+TGG - chr2_1:65843170-65843189 None:intergenic 45.0%
GTGTAAGAAGATTGTCCCCA+AGG - chr2_1:65843224-65843243 None:intergenic 45.0%
!!! CTACCATGTTTTGGTGGGTT+TGG + chr2_1:65843299-65843318 Msa0218580:CDS 45.0%
! AGTGGGACTCCTGATTTTCT+AGG - chr2_1:65843414-65843433 None:intergenic 45.0%
! ATGTTTTGTGGTCCCGTTCT+TGG - chr2_1:65843469-65843488 None:intergenic 45.0%
GGCTAAAAAAGCAGCTCAGA+AGG + chr2_1:65843545-65843564 Msa0218580:CDS 45.0%
CTAGAAACCTGACTTCCTTG+TGG - chr2_1:65843723-65843742 None:intergenic 45.0%
CACAAGGAAGTCAGGTTTCT+AGG + chr2_1:65843721-65843740 Msa0218580:CDS 45.0%
GACATCTATACTGCCTAGTC+TGG - chr2_1:65843857-65843876 None:intergenic 45.0%
TAGGCAGTATAGATGTCCTG+AGG + chr2_1:65843860-65843879 Msa0218580:CDS 45.0%
AGATGTCCTGAGGTTCTTCT+AGG + chr2_1:65843870-65843889 Msa0218580:CDS 45.0%
! ATATGCTTTGAGCTTGCCAC+TGG + chr2_1:65843936-65843955 Msa0218580:CDS 45.0%
!! TACAAAACCGGCTTGTAAGG+TGG + chr2_1:65844226-65844245 Msa0218580:intron 45.0%
!! ACAAAACCGGCTTGTAAGGT+GGG + chr2_1:65844227-65844246 Msa0218580:intron 45.0%
! GAGGGAAGTTTTTGTGGTGA+TGG + chr2_1:65844486-65844505 Msa0218580:intron 45.0%
TGGTTCGTCTAGAAACCTAG+CGG + chr2_1:65844710-65844729 Msa0218580:intron 45.0%
TGTGTTTGGATGGAGGGTTT+AGG - chr2_1:65845517-65845536 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+GGG - chr2_1:65845523-65845542 None:intergenic 45.0%
! AGTCTAAGGGTGTGTTTGGA+TGG - chr2_1:65845527-65845546 None:intergenic 45.0%
!! GGATCATCTGGCATTGATGA+TGG + chr2_1:65846131-65846150 Msa0218580:intron 45.0%
!! GCATTGATGATGGAGCTTCT+CGG + chr2_1:65846141-65846160 Msa0218580:CDS 45.0%
!! CATTGATGATGGAGCTTCTC+GGG + chr2_1:65846142-65846161 Msa0218580:CDS 45.0%
!! ATTGATGATGGAGCTTCTCG+GGG + chr2_1:65846143-65846162 Msa0218580:CDS 45.0%
TGAAAAAGTCCCGGGAATAG+CGG - chr2_1:65846467-65846486 None:intergenic 45.0%
! GTGATTTGAGACACATTCGC+CGG + chr2_1:65846496-65846515 Msa0218580:CDS 45.0%
TGGATGAGTAAGACACTGAG+CGG - chr2_1:65846646-65846665 None:intergenic 45.0%
CTCAGTGTCTTACTCATCCA+TGG + chr2_1:65846646-65846665 Msa0218580:CDS 45.0%
CTCCGTTAATAGCATCAGCA+TGG - chr2_1:65846716-65846735 None:intergenic 45.0%
GCTATTAACGGAGAAAAGCC+TGG + chr2_1:65846723-65846742 Msa0218580:CDS 45.0%
GCCTGGAAAGTTAAGGGAAA+AGG + chr2_1:65846740-65846759 Msa0218580:CDS 45.0%
GAGGCTGTGGAAGTTAGTAT+GGG + chr2_1:65846771-65846790 Msa0218580:CDS 45.0%
AGGCTGTGGAAGTTAGTATG+GGG + chr2_1:65846772-65846791 Msa0218580:CDS 45.0%
!!! ACGCCGATGGTTTTGTAGAT+TGG - chr2_1:65846839-65846858 None:intergenic 45.0%
TGAGAAACCCTTCATAGGGT+AGG + chr2_1:65846997-65847016 Msa0218580:three_prime_UTR 45.0%
GAGAAACCCTTCATAGGGTA+GGG + chr2_1:65846998-65847017 Msa0218580:three_prime_UTR 45.0%
GTGCACTCTATTGAGTGTGA+AGG - chr2_1:65847106-65847125 None:intergenic 45.0%
!!! ATGTTTTTTAATATAATTTT+TGG - chr2_1:65845610-65845629 None:intergenic 5.0%
GTTCAGAGTAAGCTTGGCTG+GGG + chr2_1:65842155-65842174 Msa0218580:CDS 50.0%
TGTCAGAGTCCGACATGTGT+TGG + chr2_1:65842547-65842566 Msa0218580:intron 50.0%
GTCCGACATGTGTTGGACAT+TGG + chr2_1:65842554-65842573 Msa0218580:intron 50.0%
GGCACCAACACTTCCATCAA+AGG - chr2_1:65842585-65842604 None:intergenic 50.0%
! GTGTTGGTGCCTATGAAGCA+TGG + chr2_1:65842594-65842613 Msa0218580:intron 50.0%
TGAAGCATGGATACGGACAC+CGG + chr2_1:65842607-65842626 Msa0218580:intron 50.0%
ACACGACACATGTCCAACAC+TGG + chr2_1:65842726-65842745 Msa0218580:intron 50.0%
CACGACACATGTCCAACACT+GGG + chr2_1:65842727-65842746 Msa0218580:intron 50.0%
GATTATGCGTGTCCCAGTGT+TGG - chr2_1:65842742-65842761 None:intergenic 50.0%
GACACGCATAATCCGAGAAG+TGG + chr2_1:65842749-65842768 Msa0218580:intron 50.0%
AATGAAGCACGGCCACTTCT+CGG - chr2_1:65842764-65842783 None:intergenic 50.0%
!! GAAGAGTGCTCAGCACTACA+CGG + chr2_1:65843059-65843078 Msa0218580:CDS 50.0%
GGATGTTCCACAAGGAAGTC+AGG + chr2_1:65843713-65843732 Msa0218580:CDS 50.0%
! GGAAGTCAGGTTTCTAGGAG+AGG + chr2_1:65843726-65843745 Msa0218580:CDS 50.0%
GCAAAGGACCACATATCTGC+CGG - chr2_1:65843912-65843931 None:intergenic 50.0%
!! CAAAACCGGCTTGTAAGGTG+GGG + chr2_1:65844228-65844247 Msa0218580:intron 50.0%
TCATTCCCCACCTTACAAGC+CGG - chr2_1:65844236-65844255 None:intergenic 50.0%
GTACCACATCGGATGAGGTA+TGG - chr2_1:65844285-65844304 None:intergenic 50.0%
CGTGATGAGTGACTCGATAG+CGG + chr2_1:65844345-65844364 Msa0218580:intron 50.0%
TGACCCAGCAGATCTCATGT+AGG + chr2_1:65844369-65844388 Msa0218580:intron 50.0%
GAGCCTACATGAGATCTGCT+GGG - chr2_1:65844375-65844394 None:intergenic 50.0%
AGAGCCTACATGAGATCTGC+TGG - chr2_1:65844376-65844395 None:intergenic 50.0%
TGATTGGCAACACTTCCGCT+AGG - chr2_1:65844728-65844747 None:intergenic 50.0%
TGGAGGGTTTAGGAGGTGAA+GGG - chr2_1:65845507-65845526 None:intergenic 50.0%
ATGGAGGGTTTAGGAGGTGA+AGG - chr2_1:65845508-65845527 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG - chr2_1:65845514-65845533 None:intergenic 50.0%
! CTAAGGGTGTGTTTGGATGG+AGG - chr2_1:65845524-65845543 None:intergenic 50.0%
! GGGAAGTCTAAGGGTGTGTT+TGG - chr2_1:65845531-65845550 None:intergenic 50.0%
CCTAATATGCCTACCTTGCG+AGG - chr2_1:65846174-65846193 None:intergenic 50.0%
CCTCGCAAGGTAGGCATATT+AGG + chr2_1:65846171-65846190 Msa0218580:intron 50.0%
TAATAGGCCAGAACCGCAAC+CGG - chr2_1:65846518-65846537 None:intergenic 50.0%
! GCGGTTCTGGCCTATTACTA+AGG + chr2_1:65846521-65846540 Msa0218580:CDS 50.0%
ACTCATCCATGGATGAGTGC+AGG + chr2_1:65846657-65846676 Msa0218580:CDS 50.0%
GCATGGATGCTATTCACCGA+GGG - chr2_1:65846699-65846718 None:intergenic 50.0%
AGCATGGATGCTATTCACCG+AGG - chr2_1:65846700-65846719 None:intergenic 50.0%
GTTAAGGGAAAAGGACGAGC+AGG + chr2_1:65846749-65846768 Msa0218580:CDS 50.0%
GGAGGCTGTGGAAGTTAGTA+TGG + chr2_1:65846770-65846789 Msa0218580:CDS 50.0%
CTCTTGCCCTACCCTATGAA+GGG - chr2_1:65847007-65847026 None:intergenic 50.0%
TCTCTTGCCCTACCCTATGA+AGG - chr2_1:65847008-65847027 None:intergenic 50.0%
TCCTTCGACTTCAATGGCGG+AGG + chr2_1:65842019-65842038 Msa0218580:exon 55.0%
TCCTCCGCCATTGAAGTCGA+AGG - chr2_1:65842023-65842042 None:intergenic 55.0%
GTCAGTGTCTGTGTCGTGTC+CGG - chr2_1:65842629-65842648 None:intergenic 55.0%
GAGAAGTGGCCGTGCTTCAT+TGG + chr2_1:65842763-65842782 Msa0218580:intron 55.0%
TGCTCAGCACTACACGGAAG+CGG + chr2_1:65843065-65843084 Msa0218580:CDS 55.0%
TCGTGGTATTCCCCTTCCCA+TGG + chr2_1:65843263-65843282 Msa0218580:CDS 55.0%
AGCTCAGAAGGAAAGTCCCG+AGG + chr2_1:65843557-65843576 Msa0218580:CDS 55.0%
AGAATCCTCCTCTGCTGCCT+CGG - chr2_1:65843577-65843596 None:intergenic 55.0%
ACTCGACTCCGGCAGATATG+TGG + chr2_1:65843901-65843920 Msa0218580:CDS 55.0%
AGGCCATACCTCATCCGATG+TGG + chr2_1:65844279-65844298 Msa0218580:intron 55.0%
TTAACACCCTCCTCGCGTCT+AGG + chr2_1:65844307-65844326 Msa0218580:intron 55.0%
TTCAGTCCTAGACGCGAGGA+GGG - chr2_1:65844316-65844335 None:intergenic 55.0%
CGAGTCACTCATCACGCTTC+AGG - chr2_1:65844341-65844360 None:intergenic 55.0%
GGTTTAGGAGGTGAAGGGAG+GGG - chr2_1:65845502-65845521 None:intergenic 55.0%
GGGTTTAGGAGGTGAAGGGA+GGG - chr2_1:65845503-65845522 None:intergenic 55.0%
AGGGTTTAGGAGGTGAAGGG+AGG - chr2_1:65845504-65845523 None:intergenic 55.0%
! TGAGACACATTCGCCGGTTG+CGG + chr2_1:65846502-65846521 Msa0218580:CDS 55.0%
CATGGATGAGTGCAGGTCCT+CGG + chr2_1:65846664-65846683 Msa0218580:CDS 55.0%
AAGGGAAAAGGACGAGCAGG+AGG + chr2_1:65846752-65846771 Msa0218580:CDS 55.0%
TAGGGTAGGGCAAGAGAAGC+TGG + chr2_1:65847011-65847030 Msa0218580:three_prime_UTR 55.0%
GTAGGGCAAGAGAAGCTGGA+TGG + chr2_1:65847015-65847034 Msa0218580:three_prime_UTR 55.0%
GCACTACACGGAAGCGGCAA+TGG + chr2_1:65843071-65843090 Msa0218580:CDS 60.0%
GAATCCTCCTCTGCTGCCTC+GGG - chr2_1:65843576-65843595 None:intergenic 60.0%
GTTCAGTCCTAGACGCGAGG+AGG - chr2_1:65844317-65844336 None:intergenic 60.0%
GGTGTTCAGTCCTAGACGCG+AGG - chr2_1:65844320-65844339 None:intergenic 60.0%
TAGGAGGTGAAGGGAGGGGA+GGG - chr2_1:65845498-65845517 None:intergenic 60.0%
TTAGGAGGTGAAGGGAGGGG+AGG - chr2_1:65845499-65845518 None:intergenic 60.0%
! ACATTCGCCGGTTGCGGTTC+TGG + chr2_1:65846508-65846527 Msa0218580:CDS 60.0%
!! GCGGCCGTTGGTCTCTTTTC+AGG - chr2_1:65846627-65846646 None:intergenic 60.0%
GTAAGACACTGAGCGGCCGT+TGG - chr2_1:65846639-65846658 None:intergenic 60.0%
CGAGGACCTGCACTCATCCA+TGG - chr2_1:65846666-65846685 None:intergenic 60.0%
TCCTCGGACTCTTGAGCCCT+CGG + chr2_1:65846680-65846699 Msa0218580:CDS 60.0%
AAAGGACGAGCAGGAGGCTG+TGG + chr2_1:65846758-65846777 Msa0218580:CDS 60.0%
CCAATGTGCAGCTACGCCGA+TGG - chr2_1:65846852-65846871 None:intergenic 60.0%
CCATCGGCGTAGCTGCACAT+TGG + chr2_1:65846849-65846868 Msa0218580:exon 60.0%
GGAAAGTCCCGAGGCAGCAG+AGG + chr2_1:65843566-65843585 Msa0218580:CDS 65.0%
AAGTCCCGAGGCAGCAGAGG+AGG + chr2_1:65843569-65843588 Msa0218580:CDS 65.0%
TCTCGGGGTGATGCCTCGCA+AGG + chr2_1:65846158-65846177 Msa0218580:CDS 65.0%
GGGGTGATGCCTCGCAAGGT+AGG + chr2_1:65846162-65846181 Msa0218580:intron 65.0%
CTCTTGGCGGCCGCTATTCC+CGG + chr2_1:65846454-65846473 Msa0218580:CDS 65.0%
TCTTGGCGGCCGCTATTCCC+GGG + chr2_1:65846455-65846474 Msa0218580:CDS 65.0%
ACCGAGGGCTCAAGAGTCCG+AGG - chr2_1:65846684-65846703 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 65841815 65847311 65841815 ID=Msa0218580;Name=Msa0218580
chr2_1 mRNA 65841815 65847311 65841815 ID=Msa0218580-mRNA-1;Parent=Msa0218580;Name=Msa0218580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=217|1|1|1|1|1|4|451|539
chr2_1 exon 65841815 65842220 65841815 ID=Msa0218580-mRNA-1:exon:18453;Parent=Msa0218580-mRNA-1
chr2_1 exon 65843036 65844007 65843036 ID=Msa0218580-mRNA-1:exon:18454;Parent=Msa0218580-mRNA-1
chr2_1 exon 65846132 65846179 65846132 ID=Msa0218580-mRNA-1:exon:18455;Parent=Msa0218580-mRNA-1
chr2_1 exon 65846450 65847311 65846450 ID=Msa0218580-mRNA-1:exon:18456;Parent=Msa0218580-mRNA-1
chr2_1 five_prime_UTR 65841815 65842031 65841815 ID=Msa0218580-mRNA-1:five_prime_utr;Parent=Msa0218580-mRNA-1
chr2_1 CDS 65842032 65842220 65842032 ID=Msa0218580-mRNA-1:cds;Parent=Msa0218580-mRNA-1
chr2_1 CDS 65843036 65844007 65843036 ID=Msa0218580-mRNA-1:cds;Parent=Msa0218580-mRNA-1
chr2_1 CDS 65846132 65846179 65846132 ID=Msa0218580-mRNA-1:cds;Parent=Msa0218580-mRNA-1
chr2_1 CDS 65846450 65846860 65846450 ID=Msa0218580-mRNA-1:cds;Parent=Msa0218580-mRNA-1
chr2_1 three_prime_UTR 65846861 65847311 65846861 ID=Msa0218580-mRNA-1:three_prime_utr;Parent=Msa0218580-mRNA-1
Gene Sequence

>Msa0218580

ATGGCGGAGGATCGCAAAGATGCGAGTGATTACAGTTCGGAAGATGAAGGAACTGAGGATTACAAACGAGGTGGTTATCATGCGGTTCAGATTGGTGACACTTTCAAAAATGGGTGCTATGTTGTTCAGAGTAAGCTTGGCTGGGGTCATTTTTCAACTGTTTGGCTCGCTTGGGATACTCAGAAATTGCGATATGTTGCCTTAAAAATTCAGAAGAGTGCTCAGCACTACACGGAAGCGGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGAAGGGGATCTAGAGGATAAGAAATGTGTTGTGAAGCTTTTGGACCACTTTAAGCATTCAGGGCCTAATGGTCAGCATGTTTGTATGGTTTTTGAATTCCTTGGGGACAATCTTCTTACACTTATCAAGTATAGTGATTATCGTGGTATTCCCCTTCCCATGGTCAAAGAAATTTGCTACCATGTTTTGGTGGGTTTGGATTATTTGCATCGTGAGCTTTCTATAATACACACTGATTTGAAGCCAGAAAATGTTTTGCTTGTCTCTCCAATAGATCCATCTAAAGATCCTAGAAAATCAGGAGTCCCACTTATACTTCCAACCACTAAAGTCAAGACTGTATCCAAGAACGGGACCACAAAACATGATAAAAGTTCGAATGGAGATTTAACCAAGAACCAGAAAAAGAAGATGCGGAAAAAGGCTAAAAAAGCAGCTCAGAAGGAAAGTCCCGAGGCAGCAGAGGAGGATTCTGAAGCACCTGAACAAGATGATTCTAGTAATGATGTGAAACCAATTGTAGAAAATGGTGAAGGTAAACCTAATAGTCCCACAAGTAAAGATGAATCAGCAATGACTTCTGAAACTAAGGATGTTCCACAAGGAAGTCAGGTTTCTAGGAGAGGTAGTTGCTCTACGAGAAAGAAGTTGCTCGCAGCTGCTGATCTTAAGTGCAAGCTTGTGGATTTTGGAAATGCTTGTTGGACGTATAAACAATTTACAAATGATATCCAGACTAGGCAGTATAGATGTCCTGAGGTTCTTCTAGGTTCTAAATACTCGACTCCGGCAGATATGTGGTCCTTTGCTTGCATATGCTTTGAGCTTGCCACTGGCGATGTTCTTTTTGATCCTCACAGTGGTGAAAACTATGACAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTCGGGGTGATGCCTCGCAAGATTGCTCTTGGCGGCCGCTATTCCCGGGACTTTTTCAATAGATCTGGTGATTTGAGACACATTCGCCGGTTGCGGTTCTGGCCTATTACTAAGGTTTTGACGGAGAAGTATGATTTCAGTGCGCAAGATGCAAGTGACATGTCTGACTTCCTTGTTCCGTTACTTGACTTTGTTCCTGAAAAGAGACCAACGGCCGCTCAGTGTCTTACTCATCCATGGATGAGTGCAGGTCCTCGGACTCTTGAGCCCTCGGTGAATAGCATCCATGCTGATGCTATTAACGGAGAAAAGCCTGGAAAGTTAAGGGAAAAGGACGAGCAGGAGGCTGTGGAAGTTAGTATGGGGAATATGACCATTGATGGAACTCCAAAGACACTCAAAGATTTCCAATCTACAAAACCATCGGCGTAG
Protein sequence

>Msa0218580

MAEDRKDASDYSSEDEGTEDYKRGGYHAVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKLRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLEDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGIPLPMVKEICYHVLVGLDYLHRELSIIHTDLKPENVLLVSPIDPSKDPRKSGVPLILPTTKVKTVSKNGTTKHDKSSNGDLTKNQKKKMRKKAKKAAQKESPEAAEEDSEAPEQDDSSNDVKPIVENGEGKPNSPTSKDESAMTSETKDVPQGSQVSRRGSCSTRKKLLAAADLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADMWSFACICFELATGDVLFDPHSGENYDRDEDHLALMMELLGVMPRKIALGGRYSRDFFNRSGDLRHIRRLRFWPITKVLTEKYDFSAQDASDMSDFLVPLLDFVPEKRPTAAQCLTHPWMSAGPRTLEPSVNSIHADAINGEKPGKLREKDEQEAVEVSMGNMTIDGTPKTLKDFQSTKPSA*