Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219090 | XP_003596822.1 | 97.222 | 216 | 1 | 1 | 1 | 211 | 1 | 216 | 1.21e-148 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219090 | sp|Q8VZB9|R10A1_ARATH | 87.037 | 216 | 23 | 1 | 1 | 211 | 1 | 216 | 8.48e-122 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219090 | G7ITT4 | 97.222 | 216 | 1 | 1 | 1 | 211 | 1 | 216 | 5.77e-149 | 422 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042510 | Msa0219090 | 0.856699 | 2.696343e-62 | -8.615850e-47 |
| Msa0079560 | Msa0219090 | 0.849641 | 2.838351e-60 | -8.615850e-47 |
| Msa0127230 | Msa0219090 | 0.844485 | 7.344126e-59 | -8.615850e-47 |
| Msa0188740 | Msa0219090 | 0.805993 | 1.020575e-49 | -8.615850e-47 |
| Msa0192300 | Msa0219090 | 0.800209 | 1.604849e-48 | -8.615850e-47 |
| Msa0219090 | Msa0239420 | 0.800478 | 1.414355e-48 | -8.615850e-47 |
| Msa0219090 | Msa0270160 | 0.842452 | 2.563801e-58 | -8.615850e-47 |
| Msa0219090 | Msa0301250 | 0.805856 | 1.090705e-49 | -8.615850e-47 |
| Msa0219090 | Msa0313060 | 0.806173 | 9.352851e-50 | -8.615850e-47 |
| Msa0219090 | Msa0377370 | 0.870582 | 1.308755e-66 | -8.615850e-47 |
| Msa0219090 | Msa0426090 | 0.808532 | 2.956799e-50 | -8.615850e-47 |
| Msa0219090 | Msa0426940 | 0.813388 | 2.625794e-51 | -8.615850e-47 |
| Msa0219090 | Msa0472480 | 0.809644 | 1.708559e-50 | -8.615850e-47 |
| Msa0219090 | Msa0511760 | 0.803602 | 3.224158e-49 | -8.615850e-47 |
| Msa0219090 | Msa0547920 | 0.834284 | 3.275350e-56 | -8.615850e-47 |
| Msa0219090 | Msa0573550 | 0.831284 | 1.820999e-55 | -8.615850e-47 |
| Msa0219090 | Msa0597240 | 0.825674 | 4.122233e-54 | -8.615850e-47 |
| Msa0219090 | Msa0602900 | 0.849353 | 3.415761e-60 | -8.615850e-47 |
| Msa0219090 | Msa0605890 | 0.804410 | 2.189265e-49 | -8.615850e-47 |
| Msa0219090 | Msa0619230 | 0.834475 | 2.934440e-56 | -8.615850e-47 |
| Msa0219090 | Msa0621190 | 0.812744 | 3.634201e-51 | -8.615850e-47 |
| Msa0219090 | Msa0643960 | 0.842956 | 1.883848e-58 | -8.615850e-47 |
| Msa0219090 | Msa0694400 | 0.814763 | 1.305532e-51 | -8.615850e-47 |
| Msa0219090 | Msa0790450 | 0.817521 | 3.158527e-52 | -8.615850e-47 |
| Msa0219090 | Msa0929700 | 0.839584 | 1.451790e-57 | -8.615850e-47 |
| Msa0219090 | Msa0930790 | 0.802238 | 6.169487e-49 | -8.615850e-47 |
| Msa0219090 | Msa1235950 | 0.819312 | 1.240785e-52 | -8.615850e-47 |
| Msa0219090 | Msa1235980 | 0.821170 | 4.655909e-53 | -8.615850e-47 |
| Msa0219090 | Msa1237040 | 0.818483 | 1.914729e-52 | -8.615850e-47 |
| Msa0219090 | Msa1316100 | 0.814461 | 1.523005e-51 | -8.615850e-47 |
| Msa0219090 | Msa1317390 | 0.805546 | 1.266958e-49 | -8.615850e-47 |
| Msa0219090 | Msa1385480 | 0.810662 | 1.031079e-50 | -8.615850e-47 |
| Msa0219090 | Msa1387750 | 0.815943 | 7.134566e-52 | -8.615850e-47 |
| Msa0219090 | Msa1390760 | 0.835973 | 1.228066e-56 | -8.615850e-47 |
| Msa0219090 | Msa1403520 | 0.818180 | 2.242638e-52 | -8.615850e-47 |
| Msa0219090 | Msa1407550 | 0.806954 | 6.399675e-50 | -8.615850e-47 |
| Msa0219090 | Msa1450560 | 0.818835 | 1.593265e-52 | -8.615850e-47 |
| Msa0219090 | Msa1465700 | 0.811233 | 7.757822e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219090 | MtrunA17_Chr2g0321491 | 97.222 | 216 | 1 | 1 | 1 | 211 | 1 | 216 | 1.11e-152 | 422 |
| Msa0219090 | MtrunA17_Chr5g0399471 | 96.296 | 216 | 3 | 1 | 1 | 211 | 1 | 216 | 2.10e-151 | 418 |
| Msa0219090 | MtrunA17_Chr3g0113691 | 95.833 | 216 | 4 | 1 | 1 | 211 | 1 | 216 | 1.13e-150 | 417 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219090 | AT1G08360.1 | 87.037 | 216 | 23 | 1 | 1 | 211 | 1 | 216 | 8.62e-123 | 347 |
| Msa0219090 | AT2G27530.2 | 86.574 | 216 | 24 | 1 | 1 | 211 | 1 | 216 | 3.01e-122 | 345 |
| Msa0219090 | AT2G27530.1 | 86.574 | 216 | 24 | 1 | 1 | 211 | 1 | 216 | 3.01e-122 | 345 |
| Msa0219090 | AT5G22440.1 | 87.097 | 217 | 22 | 2 | 1 | 211 | 1 | 217 | 7.00e-121 | 342 |
| Msa0219090 | AT5G22440.2 | 87.097 | 217 | 22 | 2 | 1 | 211 | 1 | 217 | 7.00e-121 | 342 |
Find 47 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATTGAGCTTAGTATTT+TGG | 0.159478 | 2_1:+66592826 | Msa0219090:three_prime_UTR |
| TAACACTCAGTTGTACATTT+TGG | 0.225251 | 2_1:-66592263 | None:intergenic |
| TAAGCAGATTCCCCGCCTTT+TGG | 0.257203 | 2_1:+66591634 | Msa0219090:CDS |
| CCTTAGCCTCAAGAGATTCT+TGG | 0.279927 | 2_1:-66592143 | None:intergenic |
| CAAGAAACTGGTGAAGAAAT+TGG | 0.281282 | 2_1:+66591571 | Msa0219090:CDS |
| AACAGCTTCAGAAGCTAAAA+AGG | 0.292055 | 2_1:-66591609 | None:intergenic |
| AGAATTCATTTGAACTATAC+AGG | 0.362785 | 2_1:-66593035 | None:intergenic |
| AAGCATGCAAATCTTCATCT+TGG | 0.411943 | 2_1:-66590893 | None:intergenic |
| GAGACCAGGGCCCAAAAGGC+GGG | 0.444250 | 2_1:-66591645 | None:intergenic |
| GCTGTGAGAGAAGCTATTAC+AGG | 0.444577 | 2_1:+66590736 | Msa0219090:CDS |
| ATATTGTAGGCTGAGAAAAT+AGG | 0.447504 | 2_1:+66591503 | Msa0219090:intron |
| AGCTGTTGGCAATGTCAGTA+TGG | 0.454854 | 2_1:+66592224 | Msa0219090:CDS |
| GAGACTATTGAACTCCAGAT+TGG | 0.463448 | 2_1:+66590799 | Msa0219090:CDS |
| CGTAGTTCTTAAGACCAATC+TGG | 0.467027 | 2_1:-66590813 | None:intergenic |
| AAGATGAAGATTTGCATGCT+TGG | 0.474267 | 2_1:+66590895 | Msa0219090:CDS |
| CCAAGAATCTCTTGAGGCTA+AGG | 0.480487 | 2_1:+66592143 | Msa0219090:CDS |
| TGTTGAGACCAGGGCCCAAA+AGG | 0.486519 | 2_1:-66591649 | None:intergenic |
| TCAAACAAAACTGTAGAAAA+CGG | 0.489903 | 2_1:-66592877 | None:intergenic |
| AGCATGCAAATCTTCATCTT+GGG | 0.497546 | 2_1:-66590892 | None:intergenic |
| GGCTAAGGTTAATGAGACTA+AGG | 0.505363 | 2_1:+66592158 | Msa0219090:CDS |
| TAAGAACTACGACCCACAAA+AGG | 0.507014 | 2_1:+66590825 | Msa0219090:CDS |
| AGAAGCTATTACAGGAATCA+TGG | 0.507152 | 2_1:+66590744 | Msa0219090:CDS |
| TGCACAGCACCTTCTTAAGC+TGG | 0.524094 | 2_1:-66592194 | None:intergenic |
| GAAAATAGGATTGGAATCGA+TGG | 0.526298 | 2_1:+66591517 | Msa0219090:CDS |
| GCTTAAGAAGGTGCTGTGCA+TGG | 0.529970 | 2_1:+66592197 | Msa0219090:CDS |
| GTAGGCTGAGAAAATAGGAT+TGG | 0.543381 | 2_1:+66591508 | Msa0219090:intron |
| CTTAAGAAGGTGCTGTGCAT+GGG | 0.555283 | 2_1:+66592198 | Msa0219090:CDS |
| CTTGTATCTGAAAAGTTCGA+TGG | 0.557140 | 2_1:+66592757 | Msa0219090:CDS |
| GGTTAATGAGACTAAGGCTA+TGG | 0.560588 | 2_1:+66592164 | Msa0219090:CDS |
| CAAATCTTCATCTTGGGTCG+AGG | 0.562426 | 2_1:-66590886 | None:intergenic |
| TGAGACCAGGGCCCAAAAGG+CGG | 0.562642 | 2_1:-66591646 | None:intergenic |
| AGGAATGTGAGGCAATTTGA+CGG | 0.562721 | 2_1:-66590866 | None:intergenic |
| TAGCCTCAAGAGATTCTTGG+TGG | 0.564785 | 2_1:-66592140 | None:intergenic |
| AGACCAGGGCCCAAAAGGCG+GGG | 0.568858 | 2_1:-66591644 | None:intergenic |
| GGTCAAGTTCCAGCTTAAGA+AGG | 0.572000 | 2_1:+66592185 | Msa0219090:CDS |
| TCTTGGTGGGAGACAAGTGT+AGG | 0.578834 | 2_1:-66592126 | None:intergenic |
| ACTGTAATAGCTGAGACAGC+AGG | 0.580887 | 2_1:+66592851 | Msa0219090:three_prime_UTR |
| CAAAAGGATAAGCGTTTCAG+TGG | 0.592129 | 2_1:+66590841 | Msa0219090:CDS |
| CTGTGCATGGGAGTAGCTGT+TGG | 0.601108 | 2_1:+66592210 | Msa0219090:CDS |
| AAATATCTGATGAAATGCAT+AGG | 0.604214 | 2_1:-66593012 | None:intergenic |
| ATCTTGGGTCGAGGAATGTG+AGG | 0.608945 | 2_1:-66590877 | None:intergenic |
| TGGAGATGCTCAGCATGTTG+AGG | 0.621445 | 2_1:+66590915 | Msa0219090:CDS |
| TTGTATCTGAAAAGTTCGAT+GGG | 0.623088 | 2_1:+66592758 | Msa0219090:CDS |
| CTTGGTGGGAGACAAGTGTA+GGG | 0.633232 | 2_1:-66592125 | None:intergenic |
| AGCCTCAAGAGATTCTTGGT+GGG | 0.641849 | 2_1:-66592139 | None:intergenic |
| AGATGCTCAGCATGTTGAGG+AGG | 0.663333 | 2_1:+66590918 | Msa0219090:CDS |
| CTCCCACCAAGAATCTCTTG+AGG | 0.684889 | 2_1:+66592137 | Msa0219090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAATAATAGGAAAAATTT+TGG | - | chr2_1:66589724-66589743 | None:intergenic | 15.0% |
| !!! | AGGTTATTTTCATATTTTAA+CGG | - | chr2_1:66589866-66589885 | None:intergenic | 15.0% |
| !! | TGATTTGAAAATTAATTAGT+TGG | + | chr2_1:66590484-66590503 | Msa0219090:intron | 15.0% |
| !! | GATTTGAAAATTAATTAGTT+GGG | + | chr2_1:66590485-66590504 | Msa0219090:intron | 15.0% |
| !!! | TGTTTTTAATTTAGTTTTGA+TGG | + | chr2_1:66591392-66591411 | Msa0219090:intron | 15.0% |
| !!! | ATATGTATAGAATGTTTTTA+TGG | + | chr2_1:66591831-66591850 | Msa0219090:intron | 15.0% |
| !! | AAACTAAACATTATTTACTA+CGG | - | chr2_1:66592540-66592559 | None:intergenic | 15.0% |
| !!! | ATTTTCAGAATTGTTTAATT+TGG | + | chr2_1:66592687-66592706 | Msa0219090:intron | 15.0% |
| !!! | AAAATCAATGACGAAATTTT+TGG | + | chr2_1:66589767-66589786 | Msa0219090:intron | 20.0% |
| !!! | AATTTAACCTCATTTTTCTT+CGG | - | chr2_1:66589937-66589956 | None:intergenic | 20.0% |
| !! | AGAATGAAGAAGAAAAATTA+GGG | - | chr2_1:66590232-66590251 | None:intergenic | 20.0% |
| !! | AAGAATGAAGAAGAAAAATT+AGG | - | chr2_1:66590233-66590252 | None:intergenic | 20.0% |
| !! | AACAAACTGTATATAACTTT+AGG | - | chr2_1:66590358-66590377 | None:intergenic | 20.0% |
| !!! | TTCTGTTTTAAACCATATTT+CGG | - | chr2_1:66590511-66590530 | None:intergenic | 20.0% |
| !! | TGTTAATTGAAAGTAAACAA+TGG | + | chr2_1:66590658-66590677 | Msa0219090:intron | 20.0% |
| !! | GTTAATTGAAAGTAAACAAT+GGG | + | chr2_1:66590659-66590678 | Msa0219090:intron | 20.0% |
| !! | TTAATTGAAAGTAAACAATG+GGG | + | chr2_1:66590660-66590679 | Msa0219090:intron | 20.0% |
| !! | TCAAATAGCACAAAATAAAT+TGG | - | chr2_1:66591071-66591090 | None:intergenic | 20.0% |
| !!! | AACTACTTATTTTCTGAAAT+AGG | + | chr2_1:66591114-66591133 | Msa0219090:intron | 20.0% |
| !! | ACATTTAGAAAAATCTCTAT+TGG | + | chr2_1:66591251-66591270 | Msa0219090:intron | 20.0% |
| !! | AACTCTAATATGAATATTGT+AGG | + | chr2_1:66591490-66591509 | Msa0219090:intron | 20.0% |
| !! | AGCAATTTACTCTAATAAAA+TGG | - | chr2_1:66592440-66592459 | None:intergenic | 20.0% |
| !! | TAAAAACCATTTAAAAGACA+CGG | - | chr2_1:66592793-66592812 | None:intergenic | 20.0% |
| !!! | CATAATTTTCAACAAAATAC+TGG | - | chr2_1:66592916-66592935 | None:intergenic | 20.0% |
| ! | CTATGCATAGTGAAAATAAT+AGG | - | chr2_1:66589735-66589754 | None:intergenic | 25.0% |
| !!! | AGGTTAAATTCGTCATTTTA+TGG | + | chr2_1:66589947-66589966 | Msa0219090:intron | 25.0% |
| ! | TACTTGATTGAGAAACTATT+AGG | + | chr2_1:66590459-66590478 | Msa0219090:intron | 25.0% |
| !! | AAATTTTCGGTTTTTCTCTT+TGG | - | chr2_1:66590776-66590795 | None:intergenic | 25.0% |
| !! | CAATAGTCTCAACAAATTTT+CGG | - | chr2_1:66590789-66590808 | None:intergenic | 25.0% |
| !!! | TGTGCTATTTGAATTGATTT+TGG | + | chr2_1:66591079-66591098 | Msa0219090:intron | 25.0% |
| ! | GAAAGATAAACAAAACATGT+GGG | - | chr2_1:66591798-66591817 | None:intergenic | 25.0% |
| ! | TGAAAGATAAACAAAACATG+TGG | - | chr2_1:66591799-66591818 | None:intergenic | 25.0% |
| ! | ATATTCAACAAGCAAGAAAT+TGG | - | chr2_1:66591899-66591918 | None:intergenic | 25.0% |
| ! | AACTAAATGAAAAAGAAGCA+GGG | - | chr2_1:66592005-66592024 | None:intergenic | 25.0% |
| ! | TAACTAAATGAAAAAGAAGC+AGG | - | chr2_1:66592006-66592025 | None:intergenic | 25.0% |
| ! | AATTTGAAAGGAACATGTTA+TGG | - | chr2_1:66592050-66592069 | None:intergenic | 25.0% |
| ! | TGTCCTTGTTGAAAAAAAAT+TGG | + | chr2_1:66592295-66592314 | Msa0219090:CDS | 25.0% |
| !!! | TTGCCAATTTTTTTTCAACA+AGG | - | chr2_1:66592301-66592320 | None:intergenic | 25.0% |
| ! | TCATGTCAAAACATAAAAGA+CGG | - | chr2_1:66592372-66592391 | None:intergenic | 25.0% |
| !!! | GATTTTGACATTAGATTTAC+AGG | + | chr2_1:66592501-66592520 | Msa0219090:intron | 25.0% |
| ! | ACATTAGATTTACAGGTAAT+AGG | + | chr2_1:66592508-66592527 | Msa0219090:intron | 25.0% |
| !! | TGCATTTTTATTGAAGACTT+TGG | + | chr2_1:66592559-66592578 | Msa0219090:intron | 25.0% |
| !! | AATTCTGAAAATTGATATCG+AGG | - | chr2_1:66592618-66592637 | None:intergenic | 25.0% |
| !!! | AATTCTGAAAATTGATAACG+AGG | - | chr2_1:66592679-66592698 | None:intergenic | 25.0% |
| !! | TGAAATTGAGCTTAGTATTT+TGG | + | chr2_1:66592826-66592845 | Msa0219090:three_prime_UTR | 25.0% |
| ! | TCAAACAAAACTGTAGAAAA+CGG | - | chr2_1:66592880-66592899 | None:intergenic | 25.0% |
| ! | GGAAAAATATGTATGAAAGA+GGG | - | chr2_1:66592994-66593013 | None:intergenic | 25.0% |
| ! | AGGAAAAATATGTATGAAAG+AGG | - | chr2_1:66592995-66593014 | None:intergenic | 25.0% |
| ! | AAATATCTGATGAAATGCAT+AGG | - | chr2_1:66593015-66593034 | None:intergenic | 25.0% |
| ! | AGAATTCATTTGAACTATAC+AGG | - | chr2_1:66593038-66593057 | None:intergenic | 25.0% |
| !!! | GTTTTAAATGTGAAATATGG+AGG | - | chr2_1:66593068-66593087 | None:intergenic | 25.0% |
| !!! | CGTGTTTTAAATGTGAAATA+TGG | - | chr2_1:66593071-66593090 | None:intergenic | 25.0% |
| !!! | ATGACGAAATTTTTGGTGAT+TGG | + | chr2_1:66589774-66589793 | Msa0219090:intron | 30.0% |
| !!! | TGACGAAATTTTTGGTGATT+GGG | + | chr2_1:66589775-66589794 | Msa0219090:intron | 30.0% |
| AAACAGCAATTTCCTTGAAA+TGG | + | chr2_1:66589995-66590014 | Msa0219090:intron | 30.0% | |
| AACAGCAATTTCCTTGAAAT+GGG | + | chr2_1:66589996-66590015 | Msa0219090:intron | 30.0% | |
| !!! | TTAGGGTTTTGAGATTTTGT+GGG | - | chr2_1:66590056-66590075 | None:intergenic | 30.0% |
| !!! | TTTAGGGTTTTGAGATTTTG+TGG | - | chr2_1:66590057-66590076 | None:intergenic | 30.0% |
| AAAACCCTAAACTCTCAAAA+CGG | + | chr2_1:66590066-66590085 | Msa0219090:intron | 30.0% | |
| TTTCTTCTTCATTCTTTCAC+AGG | + | chr2_1:66590237-66590256 | Msa0219090:intron | 30.0% | |
| AAGCTACAAAAATGTGAACA+TGG | - | chr2_1:66590326-66590345 | None:intergenic | 30.0% | |
| ATTGGAAGACACAAAAATGA+GGG | - | chr2_1:66591053-66591072 | None:intergenic | 30.0% | |
| AATTGGAAGACACAAAAATG+AGG | - | chr2_1:66591054-66591073 | None:intergenic | 30.0% | |
| !! | AACATCAGTTTGTTGATTTG+TGG | - | chr2_1:66591376-66591395 | None:intergenic | 30.0% |
| ATTAACACAAGAAACTTAGC+AGG | - | chr2_1:66591464-66591483 | None:intergenic | 30.0% | |
| ATATTGTAGGCTGAGAAAAT+AGG | + | chr2_1:66591503-66591522 | Msa0219090:intron | 30.0% | |
| GCTAAACAAAAACAAGAAAC+TGG | + | chr2_1:66591559-66591578 | Msa0219090:CDS | 30.0% | |
| !! | TATAGAATGTTTTTATGGCC+TGG | + | chr2_1:66591836-66591855 | Msa0219090:intron | 30.0% |
| ATGTAAACTTGAATACAACC+AGG | - | chr2_1:66591857-66591876 | None:intergenic | 30.0% | |
| TAACAGTATGTTTGAACACA+AGG | - | chr2_1:66591960-66591979 | None:intergenic | 30.0% | |
| ! | TAACACTCAGTTGTACATTT+TGG | - | chr2_1:66592266-66592285 | None:intergenic | 30.0% |
| !!! | TTTTTTTCAACAAGGACACA+AGG | - | chr2_1:66592293-66592312 | None:intergenic | 30.0% |
| TTTGGATGATGAGCAATAAT+AGG | + | chr2_1:66592404-66592423 | Msa0219090:intron | 30.0% | |
| TTGGATGATGAGCAATAATA+GGG | + | chr2_1:66592405-66592424 | Msa0219090:intron | 30.0% | |
| ! | CTTTGTTGCTGTCTATTTTA+TGG | + | chr2_1:66592458-66592477 | Msa0219090:intron | 30.0% |
| TCTTCACAAAAGGTTATTTG+AGG | - | chr2_1:66592585-66592604 | None:intergenic | 30.0% | |
| TTGTATCTGAAAAGTTCGAT+GGG | + | chr2_1:66592758-66592777 | Msa0219090:CDS | 30.0% | |
| ! | ATCTTACCGTGTCTTTTAAA+TGG | + | chr2_1:66592784-66592803 | Msa0219090:exon | 30.0% |
| ! | TTTGGTGATTGGGCTTAATA+AGG | + | chr2_1:66589785-66589804 | Msa0219090:intron | 35.0% |
| TAATGTTGTTCCCACATCAA+AGG | + | chr2_1:66589827-66589846 | Msa0219090:intron | 35.0% | |
| TTAACTGCCGAAGAAAAATG+AGG | + | chr2_1:66589927-66589946 | Msa0219090:intron | 35.0% | |
| !!! | GTTTTGAGATTTTGTGGGTT+GGG | - | chr2_1:66590051-66590070 | None:intergenic | 35.0% |
| AAACCCTAAACTCTCAAAAC+GGG | + | chr2_1:66590067-66590086 | Msa0219090:intron | 35.0% | |
| !!! | TAACCCGTTTTGAGAGTTTA+GGG | - | chr2_1:66590073-66590092 | None:intergenic | 35.0% |
| !!! | TTAACCCGTTTTGAGAGTTT+AGG | - | chr2_1:66590074-66590093 | None:intergenic | 35.0% |
| ACGAAGAAGAAGCCTAATTA+GGG | - | chr2_1:66590189-66590208 | None:intergenic | 35.0% | |
| AACGAAGAAGAAGCCTAATT+AGG | - | chr2_1:66590190-66590209 | None:intergenic | 35.0% | |
| TAATTAGTTGGGCCGAAATA+TGG | + | chr2_1:66590496-66590515 | Msa0219090:intron | 35.0% | |
| ATGTAACCGAATCCATTTAG+TGG | + | chr2_1:66590552-66590571 | Msa0219090:intron | 35.0% | |
| !! | CTTTTGCCACTAAATGGATT+CGG | - | chr2_1:66590561-66590580 | None:intergenic | 35.0% |
| AGAAGCTATTACAGGAATCA+TGG | + | chr2_1:66590744-66590763 | Msa0219090:CDS | 35.0% | |
| ! | TGAAACGCTTATCCTTTTGT+GGG | - | chr2_1:66590840-66590859 | None:intergenic | 35.0% |
| AGCATGCAAATCTTCATCTT+GGG | - | chr2_1:66590895-66590914 | None:intergenic | 35.0% | |
| AAGCATGCAAATCTTCATCT+TGG | - | chr2_1:66590896-66590915 | None:intergenic | 35.0% | |
| AAGATGAAGATTTGCATGCT+TGG | + | chr2_1:66590895-66590914 | Msa0219090:CDS | 35.0% | |
| ! | TTGTAGCCCAACTATTTTGT+TGG | + | chr2_1:66590954-66590973 | Msa0219090:intron | 35.0% |
| GTGGATCCAACAAAATAGTT+GGG | - | chr2_1:66590963-66590982 | None:intergenic | 35.0% | |
| TGTGGATCCAACAAAATAGT+TGG | - | chr2_1:66590964-66590983 | None:intergenic | 35.0% | |
| TCTACAGCACTATTGCTTAT+TGG | + | chr2_1:66591294-66591313 | Msa0219090:intron | 35.0% | |
| GAAAATAGGATTGGAATCGA+TGG | + | chr2_1:66591517-66591536 | Msa0219090:CDS | 35.0% | |
| CAAGAAACTGGTGAAGAAAT+TGG | + | chr2_1:66591571-66591590 | Msa0219090:CDS | 35.0% | |
| AACAGCTTCAGAAGCTAAAA+AGG | - | chr2_1:66591612-66591631 | None:intergenic | 35.0% | |
| ATTGTAACTCTCAAGTTCCT+AGG | - | chr2_1:66591933-66591952 | None:intergenic | 35.0% | |
| AAATGAAAAAGAAGCAGGGT+TGG | - | chr2_1:66592001-66592020 | None:intergenic | 35.0% | |
| TTGAAAGGAACATGTTATGG+TGG | - | chr2_1:66592047-66592066 | None:intergenic | 35.0% | |
| CGCAATAACTGGAATTTGAA+AGG | - | chr2_1:66592062-66592081 | None:intergenic | 35.0% | |
| AAATCAGTCTACGCAATAAC+TGG | - | chr2_1:66592073-66592092 | None:intergenic | 35.0% | |
| AGTTATTGCGTAGACTGATT+TGG | + | chr2_1:66592072-66592091 | Msa0219090:intron | 35.0% | |
| TAAGTATTCCACTCATACCA+TGG | + | chr2_1:66592325-66592344 | Msa0219090:intron | 35.0% | |
| AAAGCAATGACTTCAATCCA+TGG | - | chr2_1:66592345-66592364 | None:intergenic | 35.0% | |
| !! | GTTTTGACATGATGCATCAT+TGG | + | chr2_1:66592380-66592399 | Msa0219090:intron | 35.0% |
| ACATGATGCATCATTGGATT+TGG | + | chr2_1:66592386-66592405 | Msa0219090:intron | 35.0% | |
| TACTGCTACATCTTCACAAA+AGG | - | chr2_1:66592595-66592614 | None:intergenic | 35.0% | |
| ! | CAACAATAGCTTGCATTAGA+TGG | - | chr2_1:66592722-66592741 | None:intergenic | 35.0% |
| CATCTAATGCAAGCTATTGT+TGG | + | chr2_1:66592720-66592739 | Msa0219090:intron | 35.0% | |
| CTTGTATCTGAAAAGTTCGA+TGG | + | chr2_1:66592757-66592776 | Msa0219090:CDS | 35.0% | |
| AAGAGGGAAAAAAGCTGTAT+AGG | - | chr2_1:66592978-66592997 | None:intergenic | 35.0% | |
| GTGATTGGGCTTAATAAGGT+TGG | + | chr2_1:66589789-66589808 | Msa0219090:intron | 40.0% | |
| TTCTCAGCATCCTTTGATGT+GGG | - | chr2_1:66589840-66589859 | None:intergenic | 40.0% | |
| TTTCTCAGCATCCTTTGATG+TGG | - | chr2_1:66589841-66589860 | None:intergenic | 40.0% | |
| TCGATAGTTAACTGTCGATG+AGG | - | chr2_1:66589886-66589905 | None:intergenic | 40.0% | |
| CTTCGGCAGTTAATTGCTAT+CGG | - | chr2_1:66589920-66589939 | None:intergenic | 40.0% | |
| ! | TGCTGTTTACACTCTTGTGA+AGG | - | chr2_1:66589983-66590002 | None:intergenic | 40.0% |
| ! | TACACTAGAACATGGGTTGA+TGG | - | chr2_1:66590023-66590042 | None:intergenic | 40.0% |
| GGCTTCTTACACTAGAACAT+GGG | - | chr2_1:66590030-66590049 | None:intergenic | 40.0% | |
| !!! | GGTTTTGAGATTTTGTGGGT+TGG | - | chr2_1:66590052-66590071 | None:intergenic | 40.0% |
| AGAGTGAGAATACCTTAGAG+TGG | - | chr2_1:66590145-66590164 | None:intergenic | 40.0% | |
| AGAAGCCTAATTAGGGTTTC+TGG | - | chr2_1:66590182-66590201 | None:intergenic | 40.0% | |
| AATCAGAGTCTTGCAGGAAT+TGG | - | chr2_1:66590271-66590290 | None:intergenic | 40.0% | |
| ATCTTGAATCAGAGTCTTGC+AGG | - | chr2_1:66590277-66590296 | None:intergenic | 40.0% | |
| CAAGACTCTGATTCAAGATG+AGG | + | chr2_1:66590278-66590297 | Msa0219090:intron | 40.0% | |
| TCCATTTAGTGGCAAAAGCT+TGG | + | chr2_1:66590563-66590582 | Msa0219090:intron | 40.0% | |
| ! | ACCAAGCTTTTGCCACTAAA+TGG | - | chr2_1:66590567-66590586 | None:intergenic | 40.0% |
| GAGACTATTGAACTCCAGAT+TGG | + | chr2_1:66590799-66590818 | Msa0219090:CDS | 40.0% | |
| CGTAGTTCTTAAGACCAATC+TGG | - | chr2_1:66590816-66590835 | None:intergenic | 40.0% | |
| TAAGAACTACGACCCACAAA+AGG | + | chr2_1:66590825-66590844 | Msa0219090:CDS | 40.0% | |
| ! | CTGAAACGCTTATCCTTTTG+TGG | - | chr2_1:66590841-66590860 | None:intergenic | 40.0% |
| CAAAAGGATAAGCGTTTCAG+TGG | + | chr2_1:66590841-66590860 | Msa0219090:CDS | 40.0% | |
| AGGAATGTGAGGCAATTTGA+CGG | - | chr2_1:66590869-66590888 | None:intergenic | 40.0% | |
| TTGTTGGATCCACATGTAGT+TGG | + | chr2_1:66590970-66590989 | Msa0219090:intron | 40.0% | |
| CCATTTCAACCAACTACATG+TGG | - | chr2_1:66590982-66591001 | None:intergenic | 40.0% | |
| CCACATGTAGTTGGTTGAAA+TGG | + | chr2_1:66590979-66590998 | Msa0219090:intron | 40.0% | |
| !!! | CTGCTATTTTCTGCATTCCA+CGG | + | chr2_1:66591329-66591348 | Msa0219090:intron | 40.0% |
| !!! | TGCTATTTTCTGCATTCCAC+GGG | + | chr2_1:66591330-66591349 | Msa0219090:intron | 40.0% |
| TGACTTTGCATTATGTGCTG+AGG | + | chr2_1:66591418-66591437 | Msa0219090:intron | 40.0% | |
| GTAGGCTGAGAAAATAGGAT+TGG | + | chr2_1:66591508-66591527 | Msa0219090:intron | 40.0% | |
| CTTCAGAAGCTAAAAAGGCA+TGG | - | chr2_1:66591607-66591626 | None:intergenic | 40.0% | |
| !!! | CAGGCACGTGTTTTGTTTTT+GGG | + | chr2_1:66591675-66591694 | Msa0219090:intron | 40.0% |
| !!! | AGGCACGTGTTTTGTTTTTG+GGG | + | chr2_1:66591676-66591695 | Msa0219090:intron | 40.0% |
| CAACAAGCAAGAAATTGGTG+TGG | - | chr2_1:66591894-66591913 | None:intergenic | 40.0% | |
| GAATATCAGTCTGATTGCCT+AGG | + | chr2_1:66591913-66591932 | Msa0219090:intron | 40.0% | |
| GGCTAAGGTTAATGAGACTA+AGG | + | chr2_1:66592158-66592177 | Msa0219090:CDS | 40.0% | |
| GGTTAATGAGACTAAGGCTA+TGG | + | chr2_1:66592164-66592183 | Msa0219090:CDS | 40.0% | |
| ACTTCAATCCATGGTATGAG+TGG | - | chr2_1:66592336-66592355 | None:intergenic | 40.0% | |
| GGGCTTCTTACACTAGAACA+TGG | - | chr2_1:66590031-66590050 | None:intergenic | 45.0% | |
| CTGCTCTCATTTCTTTCGTG+CGG | + | chr2_1:66590104-66590123 | Msa0219090:intron | 45.0% | |
| CATCTTCTTCCTCCACTCTA+AGG | + | chr2_1:66590130-66590149 | Msa0219090:intron | 45.0% | |
| GTGAGAATACCTTAGAGTGG+AGG | - | chr2_1:66590142-66590161 | None:intergenic | 45.0% | |
| CTCTGCCAGAAACCCTAATT+AGG | + | chr2_1:66590174-66590193 | Msa0219090:intron | 45.0% | |
| GCTGTGAGAGAAGCTATTAC+AGG | + | chr2_1:66590736-66590755 | Msa0219090:CDS | 45.0% | |
| CAAATCTTCATCTTGGGTCG+AGG | - | chr2_1:66590889-66590908 | None:intergenic | 45.0% | |
| ! | TATTTTCTGCATTCCACGGG+CGG | + | chr2_1:66591333-66591352 | Msa0219090:intron | 45.0% |
| ! | TAAATCAATTTTGCCGCCCG+TGG | - | chr2_1:66591349-66591368 | None:intergenic | 45.0% |
| !!! | GCAGGCACGTGTTTTGTTTT+TGG | + | chr2_1:66591674-66591693 | Msa0219090:intron | 45.0% |
| GCAAGAAATTGGTGTGGTCT+GGG | - | chr2_1:66591888-66591907 | None:intergenic | 45.0% | |
| AGCAAGAAATTGGTGTGGTC+TGG | - | chr2_1:66591889-66591908 | None:intergenic | 45.0% | |
| TATTCTGTCTGTCCCTTTGC+AGG | + | chr2_1:66592096-66592115 | Msa0219090:intron | 45.0% | |
| GTAGGGAACTTTCCTGCAAA+GGG | - | chr2_1:66592111-66592130 | None:intergenic | 45.0% | |
| TGTAGGGAACTTTCCTGCAA+AGG | - | chr2_1:66592112-66592131 | None:intergenic | 45.0% | |
| AGCCTCAAGAGATTCTTGGT+GGG | - | chr2_1:66592142-66592161 | None:intergenic | 45.0% | |
| TAGCCTCAAGAGATTCTTGG+TGG | - | chr2_1:66592143-66592162 | None:intergenic | 45.0% | |
| CCTTAGCCTCAAGAGATTCT+TGG | - | chr2_1:66592146-66592165 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGCTA+AGG | + | chr2_1:66592143-66592162 | Msa0219090:CDS | 45.0% | |
| GGTCAAGTTCCAGCTTAAGA+AGG | + | chr2_1:66592185-66592204 | Msa0219090:CDS | 45.0% | |
| !! | CTTAAGAAGGTGCTGTGCAT+GGG | + | chr2_1:66592198-66592217 | Msa0219090:CDS | 45.0% |
| AGCTGTTGGCAATGTCAGTA+TGG | + | chr2_1:66592224-66592243 | Msa0219090:CDS | 45.0% | |
| ! | TGCAAGCTATTGTTGGTTGC+AGG | + | chr2_1:66592727-66592746 | Msa0219090:intron | 45.0% |
| ACTGTAATAGCTGAGACAGC+AGG | + | chr2_1:66592851-66592870 | Msa0219090:three_prime_UTR | 45.0% | |
| !! | GAAAAATAAAATAAAATAAT+AGG | - | chr2_1:66589700-66589719 | None:intergenic | 5.0% |
| !! | GGGTTGATGGACCCATTTCA+AGG | - | chr2_1:66590010-66590029 | None:intergenic | 50.0% |
| ATCTTGGGTCGAGGAATGTG+AGG | - | chr2_1:66590880-66590899 | None:intergenic | 50.0% | |
| TGGAGATGCTCAGCATGTTG+AGG | + | chr2_1:66590915-66590934 | Msa0219090:CDS | 50.0% | |
| AGATGCTCAGCATGTTGAGG+AGG | + | chr2_1:66590918-66590937 | Msa0219090:CDS | 50.0% | |
| ! | TAAGCAGATTCCCCGCCTTT+TGG | + | chr2_1:66591634-66591653 | Msa0219090:CDS | 50.0% |
| ! | AAGCAGATTCCCCGCCTTTT+GGG | + | chr2_1:66591635-66591654 | Msa0219090:CDS | 50.0% |
| CTTGGTGGGAGACAAGTGTA+GGG | - | chr2_1:66592128-66592147 | None:intergenic | 50.0% | |
| TCTTGGTGGGAGACAAGTGT+AGG | - | chr2_1:66592129-66592148 | None:intergenic | 50.0% | |
| CTCCCACCAAGAATCTCTTG+AGG | + | chr2_1:66592137-66592156 | Msa0219090:CDS | 50.0% | |
| TGCACAGCACCTTCTTAAGC+TGG | - | chr2_1:66592197-66592216 | None:intergenic | 50.0% | |
| !! | GCTTAAGAAGGTGCTGTGCA+TGG | + | chr2_1:66592197-66592216 | Msa0219090:CDS | 50.0% |
| TGTTGAGACCAGGGCCCAAA+AGG | - | chr2_1:66591652-66591671 | None:intergenic | 55.0% | |
| TTTGGGCCCTGGTCTCAACA+AGG | + | chr2_1:66591652-66591671 | Msa0219090:intron | 55.0% | |
| ! | TGCCTGCCTTGTTGAGACCA+GGG | - | chr2_1:66591661-66591680 | None:intergenic | 55.0% |
| CTGTGCATGGGAGTAGCTGT+TGG | + | chr2_1:66592210-66592229 | Msa0219090:CDS | 55.0% | |
| TGAGACCAGGGCCCAAAAGG+CGG | - | chr2_1:66591649-66591668 | None:intergenic | 60.0% | |
| ! | GTGCCTGCCTTGTTGAGACC+AGG | - | chr2_1:66591662-66591681 | None:intergenic | 60.0% |
| ! | ATTCCCCGCCTTTTGGGCCC+TGG | + | chr2_1:66591641-66591660 | Msa0219090:CDS | 65.0% |
| AGACCAGGGCCCAAAAGGCG+GGG | - | chr2_1:66591647-66591666 | None:intergenic | 65.0% | |
| GAGACCAGGGCCCAAAAGGC+GGG | - | chr2_1:66591648-66591667 | None:intergenic | 65.0% | |
| GGCCCTGGTCTCAACAAGGC+AGG | + | chr2_1:66591656-66591675 | Msa0219090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 66589669 | 66593098 | 66589669 | ID=Msa0219090;Name=Msa0219090 |
| chr2_1 | mRNA | 66589669 | 66593098 | 66589669 | ID=Msa0219090-mRNA-1;Parent=Msa0219090;Name=Msa0219090-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.6|0.8|0.5|0.4|5|296|211 |
| chr2_1 | exon | 66589669 | 66589673 | 66589669 | ID=Msa0219090-mRNA-1:exon:18769;Parent=Msa0219090-mRNA-1 |
| chr2_1 | exon | 66590720 | 66590939 | 66590720 | ID=Msa0219090-mRNA-1:exon:18770;Parent=Msa0219090-mRNA-1 |
| chr2_1 | exon | 66591512 | 66591662 | 66591512 | ID=Msa0219090-mRNA-1:exon:18771;Parent=Msa0219090-mRNA-1 |
| chr2_1 | exon | 66592118 | 66592323 | 66592118 | ID=Msa0219090-mRNA-1:exon:18772;Parent=Msa0219090-mRNA-1 |
| chr2_1 | exon | 66592749 | 66593098 | 66592749 | ID=Msa0219090-mRNA-1:exon:18773;Parent=Msa0219090-mRNA-1 |
| chr2_1 | CDS | 66589669 | 66589673 | 66589669 | ID=Msa0219090-mRNA-1:cds;Parent=Msa0219090-mRNA-1 |
| chr2_1 | CDS | 66590720 | 66590939 | 66590720 | ID=Msa0219090-mRNA-1:cds;Parent=Msa0219090-mRNA-1 |
| chr2_1 | CDS | 66591512 | 66591662 | 66591512 | ID=Msa0219090-mRNA-1:cds;Parent=Msa0219090-mRNA-1 |
| chr2_1 | CDS | 66592118 | 66592323 | 66592118 | ID=Msa0219090-mRNA-1:cds;Parent=Msa0219090-mRNA-1 |
| chr2_1 | CDS | 66592749 | 66592802 | 66592749 | ID=Msa0219090-mRNA-1:cds;Parent=Msa0219090-mRNA-1 |
| chr2_1 | three_prime_UTR | 66592803 | 66593098 | 66592803 | ID=Msa0219090-mRNA-1:three_prime_utr;Parent=Msa0219090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
