Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426940 | XP_003602457.1 | 97.854 | 233 | 5 | 0 | 1 | 233 | 1 | 233 | 3.10e-162 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426940 | sp|P34091|RL6_MESCR | 79.310 | 232 | 48 | 0 | 2 | 233 | 3 | 234 | 1.32e-124 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426940 | G7J9R6 | 97.854 | 233 | 5 | 0 | 1 | 233 | 1 | 233 | 1.48e-162 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042510 | Msa0426940 | 0.800729 | 1.257343e-48 | -8.615850e-47 |
| Msa0079560 | Msa0426940 | 0.802546 | 5.329482e-49 | -8.615850e-47 |
| Msa0086160 | Msa0426940 | 0.824624 | 7.295866e-54 | -8.615850e-47 |
| Msa0116600 | Msa0426940 | 0.818536 | 1.862220e-52 | -8.615850e-47 |
| Msa0116690 | Msa0426940 | 0.820109 | 8.160120e-53 | -8.615850e-47 |
| Msa0123290 | Msa0426940 | 0.838999 | 2.059966e-57 | -8.615850e-47 |
| Msa0132460 | Msa0426940 | 0.824215 | 9.106811e-54 | -8.615850e-47 |
| Msa0182050 | Msa0426940 | 0.824483 | 7.875678e-54 | -8.615850e-47 |
| Msa0182100 | Msa0426940 | 0.844256 | 8.463558e-59 | -8.615850e-47 |
| Msa0188740 | Msa0426940 | 0.839720 | 1.338206e-57 | -8.615850e-47 |
| Msa0192300 | Msa0426940 | 0.859409 | 4.218873e-63 | -8.615850e-47 |
| Msa0195030 | Msa0426940 | 0.805881 | 1.077490e-49 | -8.615850e-47 |
| Msa0219090 | Msa0426940 | 0.813388 | 2.625794e-51 | -8.615850e-47 |
| Msa0237180 | Msa0426940 | 0.820616 | 6.244616e-53 | -8.615850e-47 |
| Msa0371490 | Msa0426940 | 0.825005 | 5.934404e-54 | -8.615850e-47 |
| Msa0373350 | Msa0426940 | 0.829380 | 5.316976e-55 | -8.615850e-47 |
| Msa0376850 | Msa0426940 | 0.828726 | 7.657249e-55 | -8.615850e-47 |
| Msa0377370 | Msa0426940 | 0.886053 | 4.777497e-72 | -8.615850e-47 |
| Msa0387290 | Msa0426940 | 0.817709 | 2.865331e-52 | -8.615850e-47 |
| Msa0388520 | Msa0426940 | 0.829063 | 6.348390e-55 | -8.615850e-47 |
| Msa0421920 | Msa0426940 | 0.823451 | 1.375746e-53 | -8.615850e-47 |
| Msa0426940 | Msa0433060 | 0.816604 | 5.075840e-52 | -8.615850e-47 |
| Msa0426940 | Msa0516830 | 0.828495 | 8.711075e-55 | -8.615850e-47 |
| Msa0426940 | Msa0521730 | 0.808564 | 2.911384e-50 | -8.615850e-47 |
| Msa0426940 | Msa0524680 | 0.817118 | 3.892125e-52 | -8.615850e-47 |
| Msa0426940 | Msa0563540 | 0.805797 | 1.122276e-49 | -8.615850e-47 |
| Msa0426940 | Msa0573550 | 0.838509 | 2.757487e-57 | -8.615850e-47 |
| Msa0426940 | Msa0574780 | 0.806104 | 9.672214e-50 | -8.615850e-47 |
| Msa0426940 | Msa0578010 | 0.823335 | 1.464263e-53 | -8.615850e-47 |
| Msa0426940 | Msa0585570 | 0.803830 | 2.891332e-49 | -8.615850e-47 |
| Msa0426940 | Msa0602900 | 0.812619 | 3.869828e-51 | -8.615850e-47 |
| Msa0426940 | Msa0609120 | 0.820555 | 6.447455e-53 | -8.615850e-47 |
| Msa0426940 | Msa0621190 | 0.840686 | 7.486878e-58 | -8.615850e-47 |
| Msa0426940 | Msa0643960 | 0.808486 | 3.025301e-50 | -8.615850e-47 |
| Msa0426940 | Msa0656450 | 0.843414 | 1.421812e-58 | -8.615850e-47 |
| Msa0426940 | Msa0663400 | 0.810234 | 1.275701e-50 | -8.615850e-47 |
| Msa0426940 | Msa0691760 | 0.816918 | 4.316892e-52 | -8.615850e-47 |
| Msa0426940 | Msa0700370 | 0.812257 | 4.644551e-51 | -8.615850e-47 |
| Msa0426940 | Msa0708630 | 0.825904 | 3.634458e-54 | -8.615850e-47 |
| Msa0426940 | Msa0790450 | 0.831585 | 1.535391e-55 | -8.615850e-47 |
| Msa0426940 | Msa0929700 | 0.826104 | 3.257273e-54 | -8.615850e-47 |
| Msa0426940 | Msa0930360 | 0.853149 | 2.892727e-61 | -8.615850e-47 |
| Msa0426940 | Msa0930790 | 0.836669 | 8.174123e-57 | -8.615850e-47 |
| Msa0426940 | Msa1082050 | 0.807949 | 3.936361e-50 | -8.615850e-47 |
| Msa0426940 | Msa1085850 | 0.838232 | 3.250539e-57 | -8.615850e-47 |
| Msa0426940 | Msa1130680 | 0.808886 | 2.484224e-50 | -8.615850e-47 |
| Msa0426940 | Msa1144610 | 0.810297 | 1.236423e-50 | -8.615850e-47 |
| Msa0426940 | Msa1144630 | 0.834613 | 2.708414e-56 | -8.615850e-47 |
| Msa0426940 | Msa1165210 | 0.836162 | 1.099678e-56 | -8.615850e-47 |
| Msa0426940 | Msa1235950 | 0.812648 | 3.813775e-51 | -8.615850e-47 |
| Msa0426940 | Msa1235980 | 0.812357 | 4.415161e-51 | -8.615850e-47 |
| Msa0426940 | Msa1237040 | 0.815473 | 9.078201e-52 | -8.615850e-47 |
| Msa0426940 | Msa1245270 | 0.807220 | 5.622194e-50 | -8.615850e-47 |
| Msa0426940 | Msa1284800 | 0.828594 | 8.242121e-55 | -8.615850e-47 |
| Msa0426940 | Msa1317390 | 0.823216 | 1.560515e-53 | -8.615850e-47 |
| Msa0426940 | Msa1347610 | 0.801625 | 8.241521e-49 | -8.615850e-47 |
| Msa0426940 | Msa1351020 | 0.823286 | 1.503463e-53 | -8.615850e-47 |
| Msa0426940 | Msa1351910 | 0.800003 | 1.766753e-48 | -8.615850e-47 |
| Msa0426940 | Msa1363930 | 0.831988 | 1.221203e-55 | -8.615850e-47 |
| Msa0426940 | Msa1387750 | 0.831796 | 1.362578e-55 | -8.615850e-47 |
| Msa0426940 | Msa1403520 | 0.858972 | 5.704633e-63 | -8.615850e-47 |
| Msa0426940 | Msa1407550 | 0.823107 | 1.655159e-53 | -8.615850e-47 |
| Msa0426940 | Msa1413570 | 0.842565 | 2.392278e-58 | -8.615850e-47 |
| Msa0426940 | Msa1432310 | 0.807626 | 4.612033e-50 | -8.615850e-47 |
| Msa0426940 | Msa1450560 | 0.829055 | 6.375217e-55 | -8.615850e-47 |
| Msa0426940 | Msa1462580 | 0.824205 | 9.158415e-54 | -8.615850e-47 |
| Msa0426940 | Msa1463510 | 0.810204 | 1.294990e-50 | -8.615850e-47 |
| Msa0426940 | Msa1465700 | 0.800731 | 1.255856e-48 | -8.615850e-47 |
| Msa0426940 | Msa1465890 | 0.819912 | 9.054347e-53 | -8.615850e-47 |
| Msa0270160 | Msa0426940 | 0.856253 | 3.645048e-62 | -8.615850e-47 |
| Msa0274940 | Msa0426940 | 0.818602 | 1.799609e-52 | -8.615850e-47 |
| Msa0301250 | Msa0426940 | 0.857161 | 1.970471e-62 | -8.615850e-47 |
| Msa0313060 | Msa0426940 | 0.857098 | 2.056624e-62 | -8.615850e-47 |
| Msa0315660 | Msa0426940 | 0.820320 | 7.301681e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426940 | MtrunA17_Chr3g0129031 | 97.854 | 233 | 5 | 0 | 1 | 233 | 1 | 233 | 2.85e-166 | 457 |
| Msa0426940 | MtrunA17_Chr3g0129231 | 97.854 | 233 | 5 | 0 | 1 | 233 | 1 | 233 | 8.17e-166 | 456 |
| Msa0426940 | MtrunA17_Chr5g0448021 | 84.615 | 234 | 35 | 1 | 1 | 233 | 1 | 234 | 3.94e-141 | 394 |
| Msa0426940 | MtrunA17_Chr8g0383131 | 85.799 | 169 | 23 | 1 | 1 | 168 | 1 | 169 | 1.22e-100 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426940 | AT1G74060.1 | 80.258 | 233 | 46 | 0 | 1 | 233 | 1 | 233 | 5.43e-122 | 346 |
| Msa0426940 | AT1G74050.1 | 80.258 | 233 | 46 | 0 | 1 | 233 | 1 | 233 | 9.39e-122 | 345 |
| Msa0426940 | AT1G18540.1 | 77.682 | 233 | 52 | 0 | 1 | 233 | 1 | 233 | 9.17e-113 | 323 |
Find 82 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCTGGAAGATTTA+AGG | 0.132093 | 3_2:+77622610 | Msa0426940:CDS |
| TTTCTCAAACAGCTTCCTTC+TGG | 0.232559 | 3_2:+77622647 | Msa0426940:CDS |
| TTAGGTCCATTCAAGATTAA+TGG | 0.250233 | 3_2:+77624318 | Msa0426940:intron |
| GGCTTCTCGGCCGGAGCTGC+AGG | 0.292400 | 3_2:-77621759 | None:intergenic |
| CAAGAGGACAAAATATATTA+AGG | 0.311546 | 3_2:-77624876 | None:intergenic |
| CTTCTTGCTGGAAGATTTAA+GGG | 0.311988 | 3_2:+77622611 | Msa0426940:CDS |
| TCTGGACTTCTTCTCGTTAC+CGG | 0.334203 | 3_2:+77622665 | Msa0426940:CDS |
| GGCTTCTTCACGTCGTCGGC+GGG | 0.353564 | 3_2:-77621795 | None:intergenic |
| TGGCTTCACACCTGCCTTCA+AGG | 0.355239 | 3_2:-77624695 | None:intergenic |
| CCCCTTGAGACGTGTGAATC+AGG | 0.357560 | 3_2:+77624344 | Msa0426940:CDS |
| GTATGGTATGCCAGCAATAA+AGG | 0.357845 | 3_2:-77624924 | None:intergenic |
| TGTATCACAAACGTGGTCTC+TGG | 0.360563 | 3_2:+77621682 | Msa0426940:CDS |
| CGAGTTCTTTGAGGCAGATA+AGG | 0.375748 | 3_2:+77624479 | Msa0426940:CDS |
| CAAGTCTGGAACACTGTCAA+TGG | 0.377541 | 3_2:-77624647 | None:intergenic |
| ACAGTGTTGATTCTTCTTGC+TGG | 0.383364 | 3_2:+77622599 | Msa0426940:CDS |
| CCGATACCCCTGATCAAGTC+AGG | 0.389802 | 3_2:-77621639 | None:intergenic |
| GCCGTAACCCTGACTTGATC+AGG | 0.402373 | 3_2:+77621631 | Msa0426940:CDS |
| TTCAGGGCTTCTATTACTCC+AGG | 0.405045 | 3_2:+77622575 | Msa0426940:intron |
| GTGAATCAGGCTTATGTTAT+CGG | 0.407883 | 3_2:+77624357 | Msa0426940:CDS |
| AAAAGCATTGTCTTCAACTA+GGG | 0.425787 | 3_2:+77621525 | Msa0426940:five_prime_UTR |
| CAAAAGCATTGTCTTCAACT+AGG | 0.442339 | 3_2:+77621524 | Msa0426940:five_prime_UTR |
| AACCGAAGAAATATCTACTT+TGG | 0.446745 | 3_2:-77624388 | None:intergenic |
| TACCAAAGTAGATATTTCTT+CGG | 0.451633 | 3_2:+77624386 | Msa0426940:CDS |
| AACTTAGGTGGCTTCTCGGC+CGG | 0.473552 | 3_2:-77621768 | None:intergenic |
| AGAAGAATCAACACTGTCCC+TGG | 0.473766 | 3_2:-77622593 | None:intergenic |
| TGCCATTGCTATTGGTGTGA+TGG | 0.475430 | 3_2:-77621583 | None:intergenic |
| GATCATCTTTCTTCTCCTGA+GGG | 0.477455 | 3_2:-77624594 | None:intergenic |
| TCTTCAACTAGGGTTTAGAC+AGG | 0.481239 | 3_2:+77621535 | Msa0426940:five_prime_UTR |
| CGTCGCTAAGCCTGCAGCTC+CGG | 0.482998 | 3_2:+77621749 | Msa0426940:CDS |
| CCTGACTTGATCAGGGGTAT+CGG | 0.491288 | 3_2:+77621639 | Msa0426940:CDS |
| GCCATTGCTATTGGTGTGAT+GGG | 0.491348 | 3_2:-77621582 | None:intergenic |
| GGGACTCCATTAATCTTGAA+TGG | 0.491418 | 3_2:-77624324 | None:intergenic |
| TGATCATCTTTCTTCTCCTG+AGG | 0.494574 | 3_2:-77624595 | None:intergenic |
| TGAAAACTTACCTAGGTGCC+AGG | 0.495019 | 3_2:+77624668 | Msa0426940:CDS |
| CACATGAGTTGGTCTTCTAA+AGG | 0.499867 | 3_2:+77624716 | Msa0426940:CDS |
| GTAAAACTTAGGTGGCTTCT+CGG | 0.500498 | 3_2:-77621772 | None:intergenic |
| GGGAGAGAGCGAGTTCTTTG+AGG | 0.505471 | 3_2:+77624470 | Msa0426940:CDS |
| ACGTGGTCTCTGGGCAATCA+AGG | 0.510085 | 3_2:+77621692 | Msa0426940:CDS |
| TTGCTATTGGTGTGATGGGA+TGG | 0.510238 | 3_2:-77621578 | None:intergenic |
| ACCTGCCTTCAAGGAAAACC+TGG | 0.516282 | 3_2:-77624686 | None:intergenic |
| GGTGACGAACCTGAGCTTAG+TGG | 0.517641 | 3_2:-77621844 | None:intergenic |
| TGGCTTCTTCACGTCGTCGG+CGG | 0.523746 | 3_2:-77621796 | None:intergenic |
| CCCTGATCAAGTCAGGGTTA+CGG | 0.525127 | 3_2:-77621632 | None:intergenic |
| CGGAGCTGCAGGCTTAGCGA+CGG | 0.526524 | 3_2:-77621748 | None:intergenic |
| GTATCACAAACGTGGTCTCT+GGG | 0.530303 | 3_2:+77621683 | Msa0426940:CDS |
| AGCCTGATTCACACGTCTCA+AGG | 0.531824 | 3_2:-77624346 | None:intergenic |
| GATCAAAAGACTGTCGATGC+TGG | 0.534143 | 3_2:+77624613 | Msa0426940:CDS |
| GGAGCTGCAGGCTTAGCGAC+GGG | 0.545817 | 3_2:-77621747 | None:intergenic |
| GTGACGAACCTGAGCTTAGT+GGG | 0.562791 | 3_2:-77621843 | None:intergenic |
| TCGTCGGCGGGGTAAAACTT+AGG | 0.563807 | 3_2:-77621783 | None:intergenic |
| GCCTGATTCACACGTCTCAA+GGG | 0.568583 | 3_2:-77624345 | None:intergenic |
| CAGGCTTAGCGACGGGATCG+TGG | 0.569427 | 3_2:-77621740 | None:intergenic |
| CCGTAACCCTGACTTGATCA+GGG | 0.572652 | 3_2:+77621632 | Msa0426940:CDS |
| ATAAAACCAAATGGTTCAAG+AGG | 0.575071 | 3_2:-77624892 | None:intergenic |
| TAGCGACGGGATCGTGGCGA+GGG | 0.582049 | 3_2:-77621734 | None:intergenic |
| GAGTGGCTTCTTCACGTCGT+CGG | 0.583036 | 3_2:-77621799 | None:intergenic |
| TCAAGGAAAACCTGGCACCT+AGG | 0.589414 | 3_2:-77624678 | None:intergenic |
| GCCTTGTGCTTGTTGCGGAG+TGG | 0.594085 | 3_2:-77621816 | None:intergenic |
| GCCACTCCGCAACAAGCACA+AGG | 0.594287 | 3_2:+77621815 | Msa0426940:CDS |
| TGATGACAAGTACTTCTCAA+AGG | 0.595456 | 3_2:+77624425 | Msa0426940:CDS |
| TTAGCGACGGGATCGTGGCG+AGG | 0.595917 | 3_2:-77621735 | None:intergenic |
| CCAGACTTGAAAACTTACCT+AGG | 0.601511 | 3_2:+77624661 | Msa0426940:CDS |
| AGGCAAAACCCACTAAGCTC+AGG | 0.601781 | 3_2:+77621835 | Msa0426940:CDS |
| AACTAGGGTTTAGACAGGGA+GGG | 0.602585 | 3_2:+77621540 | Msa0426940:five_prime_UTR |
| CGATACCCCTGATCAAGTCA+GGG | 0.606077 | 3_2:-77621638 | None:intergenic |
| CTTTAGAAGACCAACTCATG+TGG | 0.608084 | 3_2:-77624715 | None:intergenic |
| AGGTGTGAAGCCACATGAGT+TGG | 0.608147 | 3_2:+77624705 | Msa0426940:CDS |
| GTTCTTTGAGGCAGATAAGG+AGG | 0.609313 | 3_2:+77624482 | Msa0426940:CDS |
| TCCCATCACACCAATAGCAA+TGG | 0.612369 | 3_2:+77621581 | Msa0426940:exon |
| GTAACGAGAAGAAGTCCAGA+AGG | 0.620622 | 3_2:-77622662 | None:intergenic |
| TAGGGTTTAGACAGGGAGGG+AGG | 0.622216 | 3_2:+77621543 | Msa0426940:five_prime_UTR |
| TCAGGGCTTCTATTACTCCA+GGG | 0.623428 | 3_2:+77622576 | Msa0426940:intron |
| GCTTCTTCACGTCGTCGGCG+GGG | 0.624269 | 3_2:-77621794 | None:intergenic |
| CTTCAACTAGGGTTTAGACA+GGG | 0.626670 | 3_2:+77621536 | Msa0426940:five_prime_UTR |
| AGGGTTACGGCTCACTCTTG+CGG | 0.626952 | 3_2:-77621619 | None:intergenic |
| CCTGATTCACACGTCTCAAG+GGG | 0.635856 | 3_2:-77624344 | None:intergenic |
| TCGGCGGGGTAAAACTTAGG+TGG | 0.637875 | 3_2:-77621780 | None:intergenic |
| TGGGCAATCAAGGCTAAGCA+CGG | 0.658739 | 3_2:+77621702 | Msa0426940:CDS |
| CAACTAGGGTTTAGACAGGG+AGG | 0.664353 | 3_2:+77621539 | Msa0426940:five_prime_UTR |
| CGTAACCCTGACTTGATCAG+GGG | 0.675659 | 3_2:+77621633 | Msa0426940:CDS |
| GCAATCAAGGCTAAGCACGG+TGG | 0.725321 | 3_2:+77621705 | Msa0426940:CDS |
| TCTGCTATGTATCACAAACG+TGG | 0.741302 | 3_2:+77621675 | Msa0426940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTTATAATTACAGA+TGG | + | chr3_2:77622215-77622234 | Msa0426940:intron | 10.0% |
| !! | TATTGTCATATAAAATAATT+TGG | + | chr3_2:77622771-77622790 | Msa0426940:intron | 10.0% |
| !!! | AAATTTTATATGATATCTTC+AGG | + | chr3_2:77621959-77621978 | Msa0426940:intron | 15.0% |
| !! | ACAATTGTATATCTAATTAA+TGG | - | chr3_2:77622145-77622164 | None:intergenic | 15.0% |
| !! | CTCAAAATTAGAATAAAAAA+GGG | - | chr3_2:77622416-77622435 | None:intergenic | 15.0% |
| !! | TCTCAAAATTAGAATAAAAA+AGG | - | chr3_2:77622417-77622436 | None:intergenic | 15.0% |
| !! | TTTCTTAAAACAATAATTAC+CGG | - | chr3_2:77622687-77622706 | None:intergenic | 15.0% |
| !!! | TATATTTGTTTGTTGTATTA+TGG | + | chr3_2:77622746-77622765 | Msa0426940:intron | 15.0% |
| !!! | ATATTTGTTTGTTGTATTAT+GGG | + | chr3_2:77622747-77622766 | Msa0426940:intron | 15.0% |
| !! | TGTATTTGGTAAATATTATT+TGG | + | chr3_2:77622854-77622873 | Msa0426940:intron | 15.0% |
| !! | ATGTAAAGACTAAAAATATA+AGG | + | chr3_2:77623162-77623181 | Msa0426940:intron | 15.0% |
| !!! | AAATAGAAAATCTAGAATTA+TGG | - | chr3_2:77623232-77623251 | None:intergenic | 15.0% |
| !!! | ATAATTCTAGATTTTCTATT+TGG | + | chr3_2:77623231-77623250 | Msa0426940:intron | 15.0% |
| !!! | GACTAATTTTTTAATTCTTT+GGG | + | chr3_2:77623326-77623345 | Msa0426940:intron | 15.0% |
| !!! | ACTAATTTTTTAATTCTTTG+GGG | + | chr3_2:77623327-77623346 | Msa0426940:intron | 15.0% |
| !! | TATTTATTTATAGTTTCAAG+TGG | - | chr3_2:77623374-77623393 | None:intergenic | 15.0% |
| !! | ATTGATATGTTAAGATTAAA+AGG | + | chr3_2:77623408-77623427 | Msa0426940:intron | 15.0% |
| !!! | ATATACATTTTTTGTTTAGT+AGG | + | chr3_2:77623562-77623581 | Msa0426940:intron | 15.0% |
| !!! | AATTTTTAGAAATATTAGGA+TGG | - | chr3_2:77623627-77623646 | None:intergenic | 15.0% |
| !!! | CATGAATTTTTAGAAATATT+AGG | - | chr3_2:77623631-77623650 | None:intergenic | 15.0% |
| !! | TTAAAATTAAGAATCAAGTT+GGG | - | chr3_2:77623699-77623718 | None:intergenic | 15.0% |
| !! | ATTAAAATTAAGAATCAAGT+TGG | - | chr3_2:77623700-77623719 | None:intergenic | 15.0% |
| !! | AAAAAATCAATGATTTAACT+TGG | + | chr3_2:77623896-77623915 | Msa0426940:intron | 15.0% |
| !! | AAAGATATTATTAAGTGTAT+TGG | - | chr3_2:77624129-77624148 | None:intergenic | 15.0% |
| !! | AATATAGAAACTGTTGATAT+TGG | + | chr3_2:77622342-77622361 | Msa0426940:intron | 20.0% |
| !!! | TTGTTATACTACGTTTATTT+TGG | + | chr3_2:77622445-77622464 | Msa0426940:intron | 20.0% |
| !! | ATAAATCATTCAATTTGACA+AGG | - | chr3_2:77622537-77622556 | None:intergenic | 20.0% |
| !! | GTCAAATTGAATGATTTATT+TGG | + | chr3_2:77622538-77622557 | Msa0426940:intron | 20.0% |
| !!! | TGCTTATTTAAAGTTTGTTT+TGG | + | chr3_2:77622828-77622847 | Msa0426940:intron | 20.0% |
| !! | AATATAAGGTAGTACATTTA+TGG | + | chr3_2:77623176-77623195 | Msa0426940:intron | 20.0% |
| !!! | GGACTAATTTTTTAATTCTT+TGG | + | chr3_2:77623325-77623344 | Msa0426940:intron | 20.0% |
| !! | TAATCTTAACATATCAATCA+AGG | - | chr3_2:77623406-77623425 | None:intergenic | 20.0% |
| !!! | ATTTCTAAAAATTCATGTAG+AGG | + | chr3_2:77623634-77623653 | Msa0426940:intron | 20.0% |
| !!! | TAAAATTAAGAATCAAGTTG+GGG | - | chr3_2:77623698-77623717 | None:intergenic | 20.0% |
| !!! | TTTTAATTGCACTGTTTATT+AGG | + | chr3_2:77623713-77623732 | Msa0426940:intron | 20.0% |
| !!! | TAAACCTACTTTTTTTATCT+GGG | + | chr3_2:77623954-77623973 | Msa0426940:intron | 20.0% |
| !! | TTATGCTCTATTTATTTCAA+TGG | + | chr3_2:77624024-77624043 | Msa0426940:intron | 20.0% |
| !! | TATGCTCTATTTATTTCAAT+GGG | + | chr3_2:77624025-77624044 | Msa0426940:intron | 20.0% |
| !!! | TTAATAATATCTTTTGCTCA+TGG | + | chr3_2:77624135-77624154 | Msa0426940:intron | 20.0% |
| !!! | ATAATTCTAGTTGTTTTATC+TGG | + | chr3_2:77624189-77624208 | Msa0426940:intron | 20.0% |
| !!! | TAATTCTAGTTGTTTTATCT+GGG | + | chr3_2:77624190-77624209 | Msa0426940:intron | 20.0% |
| !!! | TTGTTTTTTGCTTGTTATTT+TGG | + | chr3_2:77624758-77624777 | Msa0426940:three_prime_UTR | 20.0% |
| !!! | AACATAGAATACAAGTTTTT+CGG | - | chr3_2:77624844-77624863 | None:intergenic | 20.0% |
| !! | CTAAAAATCATAAAACCAAA+TGG | - | chr3_2:77624904-77624923 | None:intergenic | 20.0% |
| ! | TTATCAGTAGAAATGAACAA+TGG | - | chr3_2:77621868-77621887 | None:intergenic | 25.0% |
| ! | CTCAAAATTGCAACAAAAAA+AGG | - | chr3_2:77621892-77621911 | None:intergenic | 25.0% |
| ! | TTTATATGATATCTTCAGGT+TGG | + | chr3_2:77621963-77621982 | Msa0426940:intron | 25.0% |
| !!! | TTGTTTTGTCTGTTAAAACT+GGG | + | chr3_2:77622032-77622051 | Msa0426940:intron | 25.0% |
| !!! | AAGATGTGGTGTTTTTTTAA+TGG | + | chr3_2:77622098-77622117 | Msa0426940:intron | 25.0% |
| ! | TATTTATAATTACAGATGGC+TGG | + | chr3_2:77622219-77622238 | Msa0426940:intron | 25.0% |
| !!! | TAGTTGTAAAGTTTTGGAAA+TGG | - | chr3_2:77622269-77622288 | None:intergenic | 25.0% |
| !! | ACAGTTTAGTTGTAAAGTTT+TGG | - | chr3_2:77622275-77622294 | None:intergenic | 25.0% |
| ! | CAGTTATATACATAAAATGC+TGG | - | chr3_2:77622724-77622743 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTGGATTTGTATT+TGG | + | chr3_2:77622840-77622859 | Msa0426940:intron | 25.0% |
| ! | TTTCCATTGAAAATTACATG+AGG | + | chr3_2:77622943-77622962 | Msa0426940:intron | 25.0% |
| ! | TAAAAGCTATGTAAAGAAGT+TGG | + | chr3_2:77623057-77623076 | Msa0426940:intron | 25.0% |
| ! | ATTATGGTCTGCAATATAAA+AGG | - | chr3_2:77623216-77623235 | None:intergenic | 25.0% |
| ! | CAACAAAGAAAACGATAATT+GGG | + | chr3_2:77623304-77623323 | Msa0426940:intron | 25.0% |
| ! | GTGGATCAATATGTAATTAA+AGG | - | chr3_2:77623355-77623374 | None:intergenic | 25.0% |
| ! | GTAAATTAAGACTAGAGATT+AGG | + | chr3_2:77623472-77623491 | Msa0426940:intron | 25.0% |
| ! | GAAAGATATTAGTATTACCA+TGG | - | chr3_2:77623603-77623622 | None:intergenic | 25.0% |
| !! | TATACATTTTCATCACACTA+TGG | - | chr3_2:77623865-77623884 | None:intergenic | 25.0% |
| !!! | CTAAACCTACTTTTTTTATC+TGG | + | chr3_2:77623953-77623972 | Msa0426940:intron | 25.0% |
| ! | AATAAATAGAGCATAACCTA+TGG | - | chr3_2:77624020-77624039 | None:intergenic | 25.0% |
| ! | TACCAAAGTAGATATTTCTT+CGG | + | chr3_2:77624386-77624405 | Msa0426940:CDS | 25.0% |
| !!! | TGTTTGTTGAGTTGATATTT+TGG | + | chr3_2:77624507-77624526 | Msa0426940:intron | 25.0% |
| !!! | TTACAATGCTTTTGCTTTTT+AGG | + | chr3_2:77624558-77624577 | Msa0426940:intron | 25.0% |
| !!! | TTTTGCTTTTTAGGACAAAA+AGG | + | chr3_2:77624567-77624586 | Msa0426940:intron | 25.0% |
| ! | CAAGAGGACAAAATATATTA+AGG | - | chr3_2:77624879-77624898 | None:intergenic | 25.0% |
| !!! | TTTGTTGTTTGAAATCAGTA+TGG | - | chr3_2:77624944-77624963 | None:intergenic | 25.0% |
| !!! | TACTGATTTCAAACAACAAA+AGG | + | chr3_2:77624944-77624963 | Msa0426940:intron | 25.0% |
| !! | ACTGATTTCAAACAACAAAA+GGG | + | chr3_2:77624945-77624964 | Msa0426940:intron | 25.0% |
| !! | AAAAGCATTGTCTTCAACTA+GGG | + | chr3_2:77621525-77621544 | Msa0426940:five_prime_UTR | 30.0% |
| TAACAGATCCAAAATAAACG+TGG | - | chr3_2:77621921-77621940 | None:intergenic | 30.0% | |
| AATCACAATAACTCCACAAA+GGG | - | chr3_2:77622006-77622025 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTGTCTGTTAAAAC+TGG | + | chr3_2:77622031-77622050 | Msa0426940:intron | 30.0% |
| TAGATATACAATTGTACCCA+AGG | + | chr3_2:77622150-77622169 | Msa0426940:intron | 30.0% | |
| TGATGACTGAGTTAATATAG+TGG | + | chr3_2:77622187-77622206 | Msa0426940:intron | 30.0% | |
| TAGAAACTGTTGATATTGGT+AGG | + | chr3_2:77622346-77622365 | Msa0426940:intron | 30.0% | |
| TCAATAGAATTGAAAAACGC+TGG | - | chr3_2:77622389-77622408 | None:intergenic | 30.0% | |
| TGAATGATTTATTTGGTACC+TGG | + | chr3_2:77622545-77622564 | Msa0426940:intron | 30.0% | |
| ! | ACACCTCATGTAATTTTCAA+TGG | - | chr3_2:77622949-77622968 | None:intergenic | 30.0% |
| TTAGTGGTTACTTATAGGAA+AGG | - | chr3_2:77622985-77623004 | None:intergenic | 30.0% | |
| AACTCTTAGTGGTTACTTAT+AGG | - | chr3_2:77622990-77623009 | None:intergenic | 30.0% | |
| CTAAACATTTCAACTCTTAG+TGG | - | chr3_2:77623001-77623020 | None:intergenic | 30.0% | |
| !!! | AGGTTGGTTTTTTTCAAAAC+AGG | - | chr3_2:77623092-77623111 | None:intergenic | 30.0% |
| AACAGGTCAAACAATAACTA+AGG | - | chr3_2:77623112-77623131 | None:intergenic | 30.0% | |
| ! | CTATTTGGTTTCTTGTACTT+TGG | + | chr3_2:77623246-77623265 | Msa0426940:intron | 30.0% |
| ! | CCAATTATCGTTTTCTTTGT+TGG | - | chr3_2:77623306-77623325 | None:intergenic | 30.0% |
| CCAACAAAGAAAACGATAAT+TGG | + | chr3_2:77623303-77623322 | Msa0426940:intron | 30.0% | |
| AGTATGTTCAAATCTAGAGA+CGG | - | chr3_2:77623747-77623766 | None:intergenic | 30.0% | |
| AGACATGACAATATCGAATT+TGG | + | chr3_2:77623794-77623813 | Msa0426940:intron | 30.0% | |
| ATGACAATATCGAATTTGGT+TGG | + | chr3_2:77623798-77623817 | Msa0426940:intron | 30.0% | |
| ACATCCCAGATAAAAAAAGT+AGG | - | chr3_2:77623961-77623980 | None:intergenic | 30.0% | |
| GGGATGTGTTTAAATATACT+AGG | + | chr3_2:77623974-77623993 | Msa0426940:intron | 30.0% | |
| ATTAATCTTGAATGGACCTA+AGG | - | chr3_2:77624319-77624338 | None:intergenic | 30.0% | |
| TTAGGTCCATTCAAGATTAA+TGG | + | chr3_2:77624318-77624337 | Msa0426940:intron | 30.0% | |
| AACCGAAGAAATATCTACTT+TGG | - | chr3_2:77624391-77624410 | None:intergenic | 30.0% | |
| !! | TTTTGGTTGTTTGTCAAACT+AGG | + | chr3_2:77624775-77624794 | Msa0426940:three_prime_UTR | 30.0% |
| ATAAAACCAAATGGTTCAAG+AGG | - | chr3_2:77624895-77624914 | None:intergenic | 30.0% | |
| !!! | TGATTTTTAGCCTTTATTGC+TGG | + | chr3_2:77624914-77624933 | Msa0426940:three_prime_UTR | 30.0% |
| !! | CAAAAGCATTGTCTTCAACT+AGG | + | chr3_2:77621524-77621543 | Msa0426940:five_prime_UTR | 35.0% |
| ! | AGTAACTGCCACGTTTATTT+TGG | + | chr3_2:77621910-77621929 | Msa0426940:intron | 35.0% |
| GAAATTTAATTCCCCCTTTG+TGG | + | chr3_2:77621990-77622009 | Msa0426940:intron | 35.0% | |
| ATCACAATAACTCCACAAAG+GGG | - | chr3_2:77622005-77622024 | None:intergenic | 35.0% | |
| GAATCACAATAACTCCACAA+AGG | - | chr3_2:77622007-77622026 | None:intergenic | 35.0% | |
| ! | TTTTGTCTGTTAAAACTGGG+TGG | + | chr3_2:77622035-77622054 | Msa0426940:intron | 35.0% |
| GCTGATGTTTGATTAAGATG+TGG | + | chr3_2:77622084-77622103 | Msa0426940:intron | 35.0% | |
| ATATTAGTTGCTACCAATGC+TGG | - | chr3_2:77622327-77622346 | None:intergenic | 35.0% | |
| GCAATCAGTCAATAAACAAG+AGG | - | chr3_2:77622515-77622534 | None:intergenic | 35.0% | |
| TCTTCTTGCTGGAAGATTTA+AGG | + | chr3_2:77622610-77622629 | Msa0426940:CDS | 35.0% | |
| CTTCTTGCTGGAAGATTTAA+GGG | + | chr3_2:77622611-77622630 | Msa0426940:CDS | 35.0% | |
| TGAAAATTACATGAGGTGTG+TGG | + | chr3_2:77622950-77622969 | Msa0426940:intron | 35.0% | |
| GGTCAAACAATAACTAAGGT+TGG | - | chr3_2:77623108-77623127 | None:intergenic | 35.0% | |
| AAGCATAGCGTTACAAAAAC+AGG | - | chr3_2:77623129-77623148 | None:intergenic | 35.0% | |
| TATAACTCTACCAACTTCCA+TGG | + | chr3_2:77623445-77623464 | Msa0426940:intron | 35.0% | |
| AGTCTTAATTTACACCTCCA+TGG | - | chr3_2:77623465-77623484 | None:intergenic | 35.0% | |
| CCTGTGACAAGCATATTAAT+AGG | - | chr3_2:77623521-77623540 | None:intergenic | 35.0% | |
| CCTATTAATATGCTTGTCAC+AGG | + | chr3_2:77623518-77623537 | Msa0426940:intron | 35.0% | |
| GGTCAGAGTAAAAAATTCCA+TGG | + | chr3_2:77623583-77623602 | Msa0426940:intron | 35.0% | |
| !! | TCAAATCTAGAGACGGATTA+GGG | - | chr3_2:77623740-77623759 | None:intergenic | 35.0% |
| ! | TTCAAATCTAGAGACGGATT+AGG | - | chr3_2:77623741-77623760 | None:intergenic | 35.0% |
| CTAGATTTGAACATACTCGA+TGG | + | chr3_2:77623750-77623769 | Msa0426940:intron | 35.0% | |
| CGATGGTCTATTAGTGAAAT+AGG | + | chr3_2:77623767-77623786 | Msa0426940:intron | 35.0% | |
| ATTCATCACACTAAGGTAAG+AGG | - | chr3_2:77623826-77623845 | None:intergenic | 35.0% | |
| CAACTCAATTCATCACACTA+AGG | - | chr3_2:77623833-77623852 | None:intergenic | 35.0% | |
| TGGAGATGTATAACTAGGTT+TGG | - | chr3_2:77624000-77624019 | None:intergenic | 35.0% | |
| ACCTAGTTATACATCTCCAT+AGG | + | chr3_2:77624001-77624020 | Msa0426940:intron | 35.0% | |
| ACCTATGGAGATGTATAACT+AGG | - | chr3_2:77624005-77624024 | None:intergenic | 35.0% | |
| GTTAACTCAATCATCATCTG+TGG | - | chr3_2:77624068-77624087 | None:intergenic | 35.0% | |
| GAAGATTTGTCAAAGATGAG+TGG | - | chr3_2:77624278-77624297 | None:intergenic | 35.0% | |
| TTGTTCACTCTCATTACCTT+AGG | + | chr3_2:77624300-77624319 | Msa0426940:intron | 35.0% | |
| GTGAATCAGGCTTATGTTAT+CGG | + | chr3_2:77624357-77624376 | Msa0426940:CDS | 35.0% | |
| TGATGACAAGTACTTCTCAA+AGG | + | chr3_2:77624425-77624444 | Msa0426940:CDS | 35.0% | |
| ! | TTTTGTCCTCTTGAACCATT+TGG | + | chr3_2:77624886-77624905 | Msa0426940:three_prime_UTR | 35.0% |
| !!! | TCAGTTTTGCAAAGTACTGA+AGG | - | chr3_2:77624985-77625004 | None:intergenic | 35.0% |
| TCTTCAACTAGGGTTTAGAC+AGG | + | chr3_2:77621535-77621554 | Msa0426940:five_prime_UTR | 40.0% | |
| CTTCAACTAGGGTTTAGACA+GGG | + | chr3_2:77621536-77621555 | Msa0426940:five_prime_UTR | 40.0% | |
| !!! | GTTTTTGGTGCCATTGCTAT+TGG | - | chr3_2:77621594-77621613 | None:intergenic | 40.0% |
| !!! | ACTCTTGCGGTTCTTGTTTT+TGG | - | chr3_2:77621609-77621628 | None:intergenic | 40.0% |
| TCTGCTATGTATCACAAACG+TGG | + | chr3_2:77621675-77621694 | Msa0426940:CDS | 40.0% | |
| GTAAAACTTAGGTGGCTTCT+CGG | - | chr3_2:77621775-77621794 | None:intergenic | 40.0% | |
| TCACAATAACTCCACAAAGG+GGG | - | chr3_2:77622004-77622023 | None:intergenic | 40.0% | |
| TTTCTTCCTGCATTAGTGCT+GGG | + | chr3_2:77622062-77622081 | Msa0426940:intron | 40.0% | |
| !! | TGAAGAAAGAGTACCAGCAT+TGG | + | chr3_2:77622311-77622330 | Msa0426940:intron | 40.0% |
| TATTGGTAGGAACTAAGCTC+AGG | + | chr3_2:77622359-77622378 | Msa0426940:intron | 40.0% | |
| !! | TGGTACCTGGATTTGTTTTC+AGG | + | chr3_2:77622558-77622577 | Msa0426940:intron | 40.0% |
| !! | GGTACCTGGATTTGTTTTCA+GGG | + | chr3_2:77622559-77622578 | Msa0426940:intron | 40.0% |
| !! | ACAGTGTTGATTCTTCTTGC+TGG | + | chr3_2:77622599-77622618 | Msa0426940:CDS | 40.0% |
| TTTCTCAAACAGCTTCCTTC+TGG | + | chr3_2:77622647-77622666 | Msa0426940:CDS | 40.0% | |
| GCTATGTAAAGAAGTTGGAC+AGG | + | chr3_2:77623062-77623081 | Msa0426940:intron | 40.0% | |
| GGTAGTACATTTATGGATGC+AGG | + | chr3_2:77623183-77623202 | Msa0426940:intron | 40.0% | |
| ATTTACACCTCCATGGAAGT+TGG | - | chr3_2:77623458-77623477 | None:intergenic | 40.0% | |
| TGTCCGAACTTGAACTTTAC+TGG | + | chr3_2:77623495-77623514 | Msa0426940:intron | 40.0% | |
| ! | AGGCCAGTAAAGTTCAAGTT+CGG | - | chr3_2:77623501-77623520 | None:intergenic | 40.0% |
| TTTCCATTGTGTATGTCCAC+TGG | + | chr3_2:77623926-77623945 | Msa0426940:intron | 40.0% | |
| CTCATGGTTTCCATTGTCTA+TGG | + | chr3_2:77624151-77624170 | Msa0426940:intron | 40.0% | |
| ATGCAAGTGACCATAGACAA+TGG | - | chr3_2:77624164-77624183 | None:intergenic | 40.0% | |
| GATTTGTCAAAGATGAGTGG+AGG | - | chr3_2:77624275-77624294 | None:intergenic | 40.0% | |
| GGGACTCCATTAATCTTGAA+TGG | - | chr3_2:77624327-77624346 | None:intergenic | 40.0% | |
| ATCCCAGAAAAAGACGAAGA+AGG | + | chr3_2:77624449-77624468 | Msa0426940:CDS | 40.0% | |
| TCCCAGAAAAAGACGAAGAA+GGG | + | chr3_2:77624450-77624469 | Msa0426940:CDS | 40.0% | |
| ! | TCCCTTCTTCGTCTTTTTCT+GGG | - | chr3_2:77624454-77624473 | None:intergenic | 40.0% |
| GATCATCTTTCTTCTCCTGA+GGG | - | chr3_2:77624597-77624616 | None:intergenic | 40.0% | |
| TGATCATCTTTCTTCTCCTG+AGG | - | chr3_2:77624598-77624617 | None:intergenic | 40.0% | |
| !!! | CCTAGGTAAGTTTTCAAGTC+TGG | - | chr3_2:77624664-77624683 | None:intergenic | 40.0% |
| CCAGACTTGAAAACTTACCT+AGG | + | chr3_2:77624661-77624680 | Msa0426940:CDS | 40.0% | |
| ! | CTTTAGAAGACCAACTCATG+TGG | - | chr3_2:77624718-77624737 | None:intergenic | 40.0% |
| !! | CACATGAGTTGGTCTTCTAA+AGG | + | chr3_2:77624716-77624735 | Msa0426940:CDS | 40.0% |
| GTATGGTATGCCAGCAATAA+AGG | - | chr3_2:77624927-77624946 | None:intergenic | 40.0% | |
| AACTAGGGTTTAGACAGGGA+GGG | + | chr3_2:77621540-77621559 | Msa0426940:five_prime_UTR | 45.0% | |
| ! | TTGCTATTGGTGTGATGGGA+TGG | - | chr3_2:77621581-77621600 | None:intergenic | 45.0% |
| TCCCATCACACCAATAGCAA+TGG | + | chr3_2:77621581-77621600 | Msa0426940:exon | 45.0% | |
| ! | GCCATTGCTATTGGTGTGAT+GGG | - | chr3_2:77621585-77621604 | None:intergenic | 45.0% |
| ! | TGCCATTGCTATTGGTGTGA+TGG | - | chr3_2:77621586-77621605 | None:intergenic | 45.0% |
| TGTATCACAAACGTGGTCTC+TGG | + | chr3_2:77621682-77621701 | Msa0426940:CDS | 45.0% | |
| GTATCACAAACGTGGTCTCT+GGG | + | chr3_2:77621683-77621702 | Msa0426940:CDS | 45.0% | |
| !! | GTTTTGCCTTGTGCTTGTTG+CGG | - | chr3_2:77621824-77621843 | None:intergenic | 45.0% |
| TGTCTGTTAAAACTGGGTGG+TGG | + | chr3_2:77622038-77622057 | Msa0426940:intron | 45.0% | |
| GTCTGTTAAAACTGGGTGGT+GGG | + | chr3_2:77622039-77622058 | Msa0426940:intron | 45.0% | |
| GTTTCTTCCTGCATTAGTGC+TGG | + | chr3_2:77622061-77622080 | Msa0426940:intron | 45.0% | |
| GAAGCCCTGAAAACAAATCC+AGG | - | chr3_2:77622566-77622585 | None:intergenic | 45.0% | |
| TTCAGGGCTTCTATTACTCC+AGG | + | chr3_2:77622575-77622594 | Msa0426940:intron | 45.0% | |
| TCAGGGCTTCTATTACTCCA+GGG | + | chr3_2:77622576-77622595 | Msa0426940:intron | 45.0% | |
| AGAAGAATCAACACTGTCCC+TGG | - | chr3_2:77622596-77622615 | None:intergenic | 45.0% | |
| GTAACGAGAAGAAGTCCAGA+AGG | - | chr3_2:77622665-77622684 | None:intergenic | 45.0% | |
| TCTGGACTTCTTCTCGTTAC+CGG | + | chr3_2:77622665-77622684 | Msa0426940:CDS | 45.0% | |
| AACTCTACCAACTTCCATGG+AGG | + | chr3_2:77623448-77623467 | Msa0426940:intron | 45.0% | |
| AGGTGAGCAGAGTTATGTGT+TGG | + | chr3_2:77623654-77623673 | Msa0426940:intron | 45.0% | |
| GGTGAGCAGAGTTATGTGTT+GGG | + | chr3_2:77623655-77623674 | Msa0426940:intron | 45.0% | |
| GTGAGCAGAGTTATGTGTTG+GGG | + | chr3_2:77623656-77623675 | Msa0426940:intron | 45.0% | |
| TGAGCAGAGTTATGTGTTGG+GGG | + | chr3_2:77623657-77623676 | Msa0426940:intron | 45.0% | |
| ATGCCAGTGGACATACACAA+TGG | - | chr3_2:77623932-77623951 | None:intergenic | 45.0% | |
| AAGTAGGTTTAGCATGCCAG+TGG | - | chr3_2:77623945-77623964 | None:intergenic | 45.0% | |
| ! | CTCCCTTCTTCGTCTTTTTC+TGG | - | chr3_2:77624455-77624474 | None:intergenic | 45.0% |
| !! | CGAGTTCTTTGAGGCAGATA+AGG | + | chr3_2:77624479-77624498 | Msa0426940:CDS | 45.0% |
| !! | GTTCTTTGAGGCAGATAAGG+AGG | + | chr3_2:77624482-77624501 | Msa0426940:CDS | 45.0% |
| GATCAAAAGACTGTCGATGC+TGG | + | chr3_2:77624613-77624632 | Msa0426940:CDS | 45.0% | |
| ! | CAAGTCTGGAACACTGTCAA+TGG | - | chr3_2:77624650-77624669 | None:intergenic | 45.0% |
| TGAAAACTTACCTAGGTGCC+AGG | + | chr3_2:77624668-77624687 | Msa0426940:CDS | 45.0% | |
| CAACTAGGGTTTAGACAGGG+AGG | + | chr3_2:77621539-77621558 | Msa0426940:five_prime_UTR | 50.0% | |
| CCCTGATCAAGTCAGGGTTA+CGG | - | chr3_2:77621635-77621654 | None:intergenic | 50.0% | |
| ! | CCGTAACCCTGACTTGATCA+GGG | + | chr3_2:77621632-77621651 | Msa0426940:CDS | 50.0% |
| ! | CGTAACCCTGACTTGATCAG+GGG | + | chr3_2:77621633-77621652 | Msa0426940:CDS | 50.0% |
| CGATACCCCTGATCAAGTCA+GGG | - | chr3_2:77621641-77621660 | None:intergenic | 50.0% | |
| ! | CCTGACTTGATCAGGGGTAT+CGG | + | chr3_2:77621639-77621658 | Msa0426940:CDS | 50.0% |
| TGGGCAATCAAGGCTAAGCA+CGG | + | chr3_2:77621702-77621721 | Msa0426940:CDS | 50.0% | |
| AGGCAAAACCCACTAAGCTC+AGG | + | chr3_2:77621835-77621854 | Msa0426940:CDS | 50.0% | |
| GTGACGAACCTGAGCTTAGT+GGG | - | chr3_2:77621846-77621865 | None:intergenic | 50.0% | |
| CAACAAGCTGAACGAGCCTT+GGG | - | chr3_2:77622169-77622188 | None:intergenic | 50.0% | |
| TCAACAAGCTGAACGAGCCT+TGG | - | chr3_2:77622170-77622189 | None:intergenic | 50.0% | |
| CCTGATTCACACGTCTCAAG+GGG | - | chr3_2:77624347-77624366 | None:intergenic | 50.0% | |
| GCCTGATTCACACGTCTCAA+GGG | - | chr3_2:77624348-77624367 | None:intergenic | 50.0% | |
| AGCCTGATTCACACGTCTCA+AGG | - | chr3_2:77624349-77624368 | None:intergenic | 50.0% | |
| TCAAGGAAAACCTGGCACCT+AGG | - | chr3_2:77624681-77624700 | None:intergenic | 50.0% | |
| ! | AGGTGCCAGGTTTTCCTTGA+AGG | + | chr3_2:77624681-77624700 | Msa0426940:CDS | 50.0% |
| ACCTGCCTTCAAGGAAAACC+TGG | - | chr3_2:77624689-77624708 | None:intergenic | 50.0% | |
| AGGTGTGAAGCCACATGAGT+TGG | + | chr3_2:77624705-77624724 | Msa0426940:CDS | 50.0% | |
| TAGGGTTTAGACAGGGAGGG+AGG | + | chr3_2:77621543-77621562 | Msa0426940:five_prime_UTR | 55.0% | |
| AGGGTTACGGCTCACTCTTG+CGG | - | chr3_2:77621622-77621641 | None:intergenic | 55.0% | |
| ! | GCCGTAACCCTGACTTGATC+AGG | + | chr3_2:77621631-77621650 | Msa0426940:CDS | 55.0% |
| CCGATACCCCTGATCAAGTC+AGG | - | chr3_2:77621642-77621661 | None:intergenic | 55.0% | |
| ACGTGGTCTCTGGGCAATCA+AGG | + | chr3_2:77621692-77621711 | Msa0426940:CDS | 55.0% | |
| GCAATCAAGGCTAAGCACGG+TGG | + | chr3_2:77621705-77621724 | Msa0426940:CDS | 55.0% | |
| AACTTAGGTGGCTTCTCGGC+CGG | - | chr3_2:77621771-77621790 | None:intergenic | 55.0% | |
| TCGGCGGGGTAAAACTTAGG+TGG | - | chr3_2:77621783-77621802 | None:intergenic | 55.0% | |
| TCGTCGGCGGGGTAAAACTT+AGG | - | chr3_2:77621786-77621805 | None:intergenic | 55.0% | |
| GAGTGGCTTCTTCACGTCGT+CGG | - | chr3_2:77621802-77621821 | None:intergenic | 55.0% | |
| GGTGACGAACCTGAGCTTAG+TGG | - | chr3_2:77621847-77621866 | None:intergenic | 55.0% | |
| CATCAGCCCAGCACTAATGC+AGG | - | chr3_2:77622071-77622090 | None:intergenic | 55.0% | |
| CCCCTTGAGACGTGTGAATC+AGG | + | chr3_2:77624344-77624363 | Msa0426940:CDS | 55.0% | |
| GGGAGAGAGCGAGTTCTTTG+AGG | + | chr3_2:77624470-77624489 | Msa0426940:CDS | 55.0% | |
| !! | GGACAAAAAGGTGCTCCCTC+AGG | + | chr3_2:77624579-77624598 | Msa0426940:intron | 55.0% |
| ! | GCCAGGTTTTCCTTGAAGGC+AGG | + | chr3_2:77624685-77624704 | Msa0426940:CDS | 55.0% |
| TGGCTTCACACCTGCCTTCA+AGG | - | chr3_2:77624698-77624717 | None:intergenic | 55.0% | |
| TGGCTTCTTCACGTCGTCGG+CGG | - | chr3_2:77621799-77621818 | None:intergenic | 60.0% | |
| GCCACTCCGCAACAAGCACA+AGG | + | chr3_2:77621815-77621834 | Msa0426940:CDS | 60.0% | |
| ! | GCCTTGTGCTTGTTGCGGAG+TGG | - | chr3_2:77621819-77621838 | None:intergenic | 60.0% |
| TAGCGACGGGATCGTGGCGA+GGG | - | chr3_2:77621737-77621756 | None:intergenic | 65.0% | |
| TTAGCGACGGGATCGTGGCG+AGG | - | chr3_2:77621738-77621757 | None:intergenic | 65.0% | |
| CAGGCTTAGCGACGGGATCG+TGG | - | chr3_2:77621743-77621762 | None:intergenic | 65.0% | |
| GGAGCTGCAGGCTTAGCGAC+GGG | - | chr3_2:77621750-77621769 | None:intergenic | 65.0% | |
| CGGAGCTGCAGGCTTAGCGA+CGG | - | chr3_2:77621751-77621770 | None:intergenic | 65.0% | |
| CGTCGCTAAGCCTGCAGCTC+CGG | + | chr3_2:77621749-77621768 | Msa0426940:CDS | 65.0% | |
| GCTTCTTCACGTCGTCGGCG+GGG | - | chr3_2:77621797-77621816 | None:intergenic | 65.0% | |
| GGCTTCTTCACGTCGTCGGC+GGG | - | chr3_2:77621798-77621817 | None:intergenic | 65.0% | |
| GGCTTCTCGGCCGGAGCTGC+AGG | - | chr3_2:77621762-77621781 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 77621507 | 77625054 | 77621507 | ID=Msa0426940;Name=Msa0426940 |
| chr3_2 | mRNA | 77621507 | 77625054 | 77621507 | ID=Msa0426940-mRNA-1;Parent=Msa0426940;Name=Msa0426940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=93|1|1|1|0.75|0.6|5|289|233 |
| chr3_2 | exon | 77621507 | 77621856 | 77621507 | ID=Msa0426940-mRNA-1:exon:20261;Parent=Msa0426940-mRNA-1 |
| chr3_2 | exon | 77622580 | 77622686 | 77622580 | ID=Msa0426940-mRNA-1:exon:20262;Parent=Msa0426940-mRNA-1 |
| chr3_2 | exon | 77624322 | 77624503 | 77624322 | ID=Msa0426940-mRNA-1:exon:20263;Parent=Msa0426940-mRNA-1 |
| chr3_2 | exon | 77624580 | 77624935 | 77624580 | ID=Msa0426940-mRNA-1:exon:20264;Parent=Msa0426940-mRNA-1 |
| chr3_2 | exon | 77624966 | 77625054 | 77624966 | ID=Msa0426940-mRNA-1:exon:20265;Parent=Msa0426940-mRNA-1 |
| chr3_2 | five_prime_UTR | 77621507 | 77621599 | 77621507 | ID=Msa0426940-mRNA-1:five_prime_utr;Parent=Msa0426940-mRNA-1 |
| chr3_2 | CDS | 77621600 | 77621856 | 77621600 | ID=Msa0426940-mRNA-1:cds;Parent=Msa0426940-mRNA-1 |
| chr3_2 | CDS | 77622580 | 77622686 | 77622580 | ID=Msa0426940-mRNA-1:cds;Parent=Msa0426940-mRNA-1 |
| chr3_2 | CDS | 77624322 | 77624503 | 77624322 | ID=Msa0426940-mRNA-1:cds;Parent=Msa0426940-mRNA-1 |
| chr3_2 | CDS | 77624580 | 77624735 | 77624580 | ID=Msa0426940-mRNA-1:cds;Parent=Msa0426940-mRNA-1 |
| chr3_2 | three_prime_UTR | 77624736 | 77624935 | 77624736 | ID=Msa0426940-mRNA-1:three_prime_utr;Parent=Msa0426940-mRNA-1 |
| chr3_2 | three_prime_UTR | 77624966 | 77625054 | 77624966 | ID=Msa0426940-mRNA-1:three_prime_utr;Parent=Msa0426940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
