Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095620 | XP_003621869.1 | 100.000 | 157 | 0 | 0 | 1 | 157 | 492 | 648 | 3.12e-102 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095620 | sp|P24629|HSP71_SOLLC | 82.911 | 158 | 25 | 2 | 1 | 157 | 494 | 650 | 8.11e-82 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095620 | G7KWU8 | 100.000 | 157 | 0 | 0 | 1 | 157 | 492 | 648 | 1.49e-102 | 317 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002560 | Msa1095620 | 0.802433 | 5.622285e-49 | -8.615850e-47 |
| Msa0003630 | Msa1095620 | 0.804530 | 2.066951e-49 | -8.615850e-47 |
| Msa0010770 | Msa1095620 | 0.800262 | 1.565100e-48 | -8.615850e-47 |
| Msa0017390 | Msa1095620 | 0.828578 | 8.318995e-55 | -8.615850e-47 |
| Msa0022550 | Msa1095620 | 0.809521 | 1.815790e-50 | -8.615850e-47 |
| Msa0028930 | Msa1095620 | 0.825273 | 5.129376e-54 | -8.615850e-47 |
| Msa0041690 | Msa1095620 | 0.805585 | 1.243248e-49 | -8.615850e-47 |
| Msa0065550 | Msa1095620 | 0.828134 | 1.064574e-54 | -8.615850e-47 |
| Msa0070430 | Msa1095620 | 0.801517 | 8.676404e-49 | -8.615850e-47 |
| Msa0080830 | Msa1095620 | 0.804259 | 2.354394e-49 | -8.615850e-47 |
| Msa0081210 | Msa1095620 | 0.804353 | 2.249765e-49 | -8.615850e-47 |
| Msa0096580 | Msa1095620 | 0.811308 | 7.472285e-51 | -8.615850e-47 |
| Msa0100160 | Msa1095620 | 0.809182 | 2.146830e-50 | -8.615850e-47 |
| Msa0103250 | Msa1095620 | 0.805152 | 1.532190e-49 | -8.615850e-47 |
| Msa0106620 | Msa1095620 | 0.816981 | 4.178198e-52 | -8.615850e-47 |
| Msa0106710 | Msa1095620 | 0.802663 | 5.042559e-49 | -8.615850e-47 |
| Msa0610090 | Msa1095620 | 0.823716 | 1.192688e-53 | -8.615850e-47 |
| Msa0626680 | Msa1095620 | 0.808436 | 3.099791e-50 | -8.615850e-47 |
| Msa0628420 | Msa1095620 | 0.802479 | 5.502617e-49 | -8.615850e-47 |
| Msa0652690 | Msa1095620 | 0.801785 | 7.643853e-49 | -8.615850e-47 |
| Msa0658480 | Msa1095620 | 0.813222 | 2.854416e-51 | -8.615850e-47 |
| Msa0664760 | Msa1095620 | 0.804457 | 2.140073e-49 | -8.615850e-47 |
| Msa0673270 | Msa1095620 | 0.805157 | 1.528478e-49 | -8.615850e-47 |
| Msa0679100 | Msa1095620 | 0.807180 | 5.732534e-50 | -8.615850e-47 |
| Msa0703440 | Msa1095620 | 0.802133 | 6.482651e-49 | -8.615850e-47 |
| Msa0708770 | Msa1095620 | 0.808624 | 2.826853e-50 | -8.615850e-47 |
| Msa0710270 | Msa1095620 | 0.831312 | 1.792840e-55 | -8.615850e-47 |
| Msa0712560 | Msa1095620 | 0.859351 | 4.393127e-63 | -8.615850e-47 |
| Msa0744090 | Msa1095620 | 0.839335 | 1.684883e-57 | -8.615850e-47 |
| Msa0744100 | Msa1095620 | 0.848387 | 6.331075e-60 | -8.615850e-47 |
| Msa0763990 | Msa1095620 | 0.802611 | 5.169012e-49 | -8.615850e-47 |
| Msa0788110 | Msa1095620 | 0.855986 | 4.364199e-62 | -8.615850e-47 |
| Msa0788120 | Msa1095620 | 0.843169 | 1.652839e-58 | -8.615850e-47 |
| Msa0825270 | Msa1095620 | 0.849285 | 3.566775e-60 | -8.615850e-47 |
| Msa0825280 | Msa1095620 | 0.842322 | 2.775332e-58 | -8.615850e-47 |
| Msa0124450 | Msa1095620 | 0.808102 | 3.651788e-50 | -8.615850e-47 |
| Msa0127100 | Msa1095620 | 0.802320 | 5.932819e-49 | -8.615850e-47 |
| Msa0128650 | Msa1095620 | 0.802418 | 5.664434e-49 | -8.615850e-47 |
| Msa0138750 | Msa1095620 | 0.802392 | 5.732524e-49 | -8.615850e-47 |
| Msa0145740 | Msa1095620 | 0.807335 | 5.315341e-50 | -8.615850e-47 |
| Msa0168870 | Msa1095620 | 0.807464 | 4.989891e-50 | -8.615850e-47 |
| Msa0192640 | Msa1095620 | 0.800037 | 1.738936e-48 | -8.615850e-47 |
| Msa0193540 | Msa1095620 | 0.802228 | 6.198943e-49 | -8.615850e-47 |
| Msa0197610 | Msa1095620 | 0.809051 | 2.290112e-50 | -8.615850e-47 |
| Msa0202090 | Msa1095620 | 0.813609 | 2.346867e-51 | -8.615850e-47 |
| Msa0205010 | Msa1095620 | 0.828135 | 1.063830e-54 | -8.615850e-47 |
| Msa0228030 | Msa1095620 | 0.803150 | 3.998965e-49 | -8.615850e-47 |
| Msa0376020 | Msa1095620 | 0.809526 | 1.811501e-50 | -8.615850e-47 |
| Msa0378970 | Msa1095620 | 0.815825 | 7.578779e-52 | -8.615850e-47 |
| Msa0384670 | Msa1095620 | 0.805433 | 1.338200e-49 | -8.615850e-47 |
| Msa0389910 | Msa1095620 | 0.815213 | 1.037503e-51 | -8.615850e-47 |
| Msa0394690 | Msa1095620 | 0.807746 | 4.348352e-50 | -8.615850e-47 |
| Msa0397820 | Msa1095620 | 0.818740 | 1.673730e-52 | -8.615850e-47 |
| Msa0419720 | Msa1095620 | 0.802979 | 4.337426e-49 | -8.615850e-47 |
| Msa0428050 | Msa1095620 | 0.803911 | 2.780314e-49 | -8.615850e-47 |
| Msa0461590 | Msa1095620 | 0.808695 | 2.728857e-50 | -8.615850e-47 |
| Msa0480780 | Msa1095620 | 0.807078 | 6.024103e-50 | -8.615850e-47 |
| Msa0980940 | Msa1095620 | 0.811913 | 5.517514e-51 | -8.615850e-47 |
| Msa1001350 | Msa1095620 | 0.803278 | 3.763030e-49 | -8.615850e-47 |
| Msa1053200 | Msa1095620 | 0.899839 | 1.331502e-77 | -8.615850e-47 |
| Msa1095620 | Msa1121260 | 0.809196 | 2.132575e-50 | -8.615850e-47 |
| Msa1095620 | Msa1126240 | 0.800586 | 1.344252e-48 | -8.615850e-47 |
| Msa1095620 | Msa1145240 | 0.806991 | 6.286595e-50 | -8.615850e-47 |
| Msa1095620 | Msa1158230 | 0.803450 | 3.466379e-49 | -8.615850e-47 |
| Msa1095620 | Msa1294960 | 0.800908 | 1.155645e-48 | -8.615850e-47 |
| Msa1095620 | Msa1320820 | 0.801681 | 8.028532e-49 | -8.615850e-47 |
| Msa1095620 | Msa1344310 | 0.803234 | 3.841355e-49 | -8.615850e-47 |
| Msa1095620 | Msa1349520 | 0.829657 | 4.553938e-55 | -8.615850e-47 |
| Msa1095620 | Msa1357080 | 0.814327 | 1.630235e-51 | -8.615850e-47 |
| Msa1095620 | Msa1359560 | 0.813822 | 2.107466e-51 | -8.615850e-47 |
| Msa1095620 | Msa1424780 | 0.808425 | 3.116460e-50 | -8.615850e-47 |
| Msa0324240 | Msa1095620 | 0.807143 | 5.838401e-50 | -8.615850e-47 |
| Msa0342290 | Msa1095620 | 0.824106 | 9.658054e-54 | -8.615850e-47 |
| Msa0514610 | Msa1095620 | 0.806219 | 9.149174e-50 | -8.615850e-47 |
| Msa0516020 | Msa1095620 | 0.810723 | 1.000448e-50 | -8.615850e-47 |
| Msa0517640 | Msa1095620 | 0.822638 | 2.128737e-53 | -8.615850e-47 |
| Msa0531250 | Msa1095620 | 0.800739 | 1.251400e-48 | -8.615850e-47 |
| Msa0538800 | Msa1095620 | 0.813147 | 2.964848e-51 | -8.615850e-47 |
| Msa0578090 | Msa1095620 | 0.804878 | 1.748393e-49 | -8.615850e-47 |
| Msa0583500 | Msa1095620 | 0.808114 | 3.630426e-50 | -8.615850e-47 |
| Msa0584550 | Msa1095620 | 0.839859 | 1.231646e-57 | -8.615850e-47 |
| Msa0588090 | Msa1095620 | 0.805251 | 1.461016e-49 | -8.615850e-47 |
| Msa0851470 | Msa1095620 | 0.843995 | 9.939814e-59 | -8.615850e-47 |
| Msa0864420 | Msa1095620 | 0.835996 | 1.212074e-56 | -8.615850e-47 |
| Msa0866400 | Msa1095620 | 0.811917 | 5.509105e-51 | -8.615850e-47 |
| Msa0899350 | Msa1095620 | 0.820017 | 8.566562e-53 | -8.615850e-47 |
| Msa0945240 | Msa1095620 | 0.804897 | 1.732905e-49 | -8.615850e-47 |
| Msa0965020 | Msa1095620 | 0.806821 | 6.828000e-50 | -8.615850e-47 |
| Msa0975940 | Msa1095620 | 0.804634 | 1.966381e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095620 | MtrunA17_Chr7g0223181 | 100.000 | 157 | 0 | 0 | 1 | 157 | 492 | 648 | 2.87e-106 | 317 |
| Msa1095620 | MtrunA17_Chr7g0262821 | 84.177 | 158 | 24 | 1 | 1 | 157 | 492 | 649 | 3.88e-86 | 265 |
| Msa1095620 | MtrunA17_Chr7g0223291 | 81.366 | 161 | 23 | 3 | 1 | 157 | 492 | 649 | 9.84e-82 | 253 |
| Msa1095620 | MtrunA17_Chr4g0031301 | 82.390 | 159 | 25 | 2 | 1 | 157 | 492 | 649 | 3.87e-77 | 241 |
| Msa1095620 | MtrunA17_Chr4g0031321 | 81.250 | 160 | 25 | 2 | 1 | 157 | 492 | 649 | 2.40e-76 | 239 |
| Msa1095620 | MtrunA17_Chr4g0073741 | 73.006 | 163 | 38 | 1 | 1 | 157 | 491 | 653 | 3.00e-68 | 218 |
| Msa1095620 | MtrunA17_Chr6g0462601 | 56.800 | 125 | 54 | 0 | 1 | 125 | 491 | 615 | 4.01e-39 | 139 |
| Msa1095620 | MtrunA17_Chr6g0462711 | 52.800 | 125 | 59 | 0 | 1 | 125 | 498 | 622 | 3.12e-38 | 137 |
| Msa1095620 | MtrunA17_Chr8g0388671 | 55.469 | 128 | 56 | 1 | 1 | 127 | 518 | 645 | 1.62e-35 | 129 |
| Msa1095620 | MtrunA17_Chr8g0388761 | 56.250 | 128 | 55 | 1 | 1 | 127 | 518 | 645 | 1.81e-35 | 129 |
| Msa1095620 | MtrunA17_Chr6g0462641 | 47.101 | 138 | 73 | 0 | 1 | 138 | 496 | 633 | 4.06e-35 | 128 |
| Msa1095620 | MtrunA17_Chr6g0462771 | 47.297 | 148 | 73 | 1 | 1 | 148 | 496 | 638 | 5.22e-35 | 128 |
| Msa1095620 | MtrunA17_Chr6g0462681 | 49.194 | 124 | 63 | 0 | 1 | 124 | 491 | 614 | 7.66e-34 | 125 |
| Msa1095620 | MtrunA17_Chr7g0223631 | 49.219 | 128 | 65 | 0 | 1 | 128 | 477 | 604 | 2.27e-33 | 123 |
| Msa1095620 | MtrunA17_Chr6g0462611 | 47.581 | 124 | 65 | 0 | 1 | 124 | 439 | 562 | 9.41e-32 | 119 |
| Msa1095620 | MtrunA17_Chr7g0223681 | 46.094 | 128 | 69 | 0 | 1 | 128 | 402 | 529 | 1.01e-30 | 115 |
| Msa1095620 | MtrunA17_Chr2g0284681 | 52.586 | 116 | 41 | 1 | 1 | 116 | 497 | 598 | 3.08e-30 | 114 |
| Msa1095620 | MtrunA17_Chr7g0223731 | 49.138 | 116 | 59 | 0 | 1 | 116 | 491 | 606 | 4.58e-30 | 114 |
| Msa1095620 | MtrunA17_Chr7g0223711 | 48.438 | 128 | 66 | 0 | 1 | 128 | 492 | 619 | 1.36e-29 | 112 |
| Msa1095620 | MtrunA17_Chr7g0223031 | 49.153 | 118 | 60 | 0 | 1 | 118 | 491 | 608 | 1.86e-29 | 112 |
| Msa1095620 | MtrunA17_Chr8g0350731 | 46.875 | 128 | 68 | 0 | 1 | 128 | 519 | 646 | 8.91e-29 | 110 |
| Msa1095620 | MtrunA17_Chr2g0298861 | 48.000 | 125 | 64 | 1 | 1 | 124 | 504 | 628 | 9.12e-29 | 110 |
| Msa1095620 | MtrunA17_Chr7g0223541 | 46.094 | 128 | 69 | 0 | 1 | 128 | 449 | 576 | 1.23e-28 | 110 |
| Msa1095620 | MtrunA17_Chr7g0223701 | 48.718 | 117 | 60 | 0 | 1 | 117 | 500 | 616 | 3.41e-28 | 108 |
| Msa1095620 | MtrunA17_Chr8g0390821 | 44.800 | 125 | 69 | 0 | 1 | 125 | 530 | 654 | 6.80e-28 | 108 |
| Msa1095620 | MtrunA17_Chr4g0040931 | 50.847 | 118 | 57 | 1 | 1 | 117 | 492 | 609 | 1.43e-27 | 107 |
| Msa1095620 | MtrunA17_Chr7g0223761 | 44.000 | 125 | 69 | 1 | 1 | 124 | 213 | 337 | 2.14e-27 | 104 |
| Msa1095620 | MtrunA17_Chr7g0248131 | 46.154 | 130 | 68 | 1 | 1 | 128 | 494 | 623 | 2.61e-27 | 106 |
| Msa1095620 | MtrunA17_Chr7g0248151 | 43.846 | 130 | 71 | 1 | 1 | 128 | 492 | 621 | 3.19e-27 | 106 |
| Msa1095620 | MtrunA17_Chr7g0223751 | 45.312 | 128 | 70 | 0 | 1 | 128 | 491 | 618 | 4.11e-27 | 105 |
| Msa1095620 | MtrunA17_Chr1g0166551 | 45.238 | 126 | 67 | 1 | 1 | 124 | 376 | 501 | 4.16e-27 | 105 |
| Msa1095620 | MtrunA17_Chr7g0228281 | 46.400 | 125 | 66 | 1 | 1 | 124 | 508 | 632 | 5.63e-27 | 105 |
| Msa1095620 | MtrunA17_Chr7g0245531 | 47.200 | 125 | 66 | 0 | 1 | 125 | 189 | 313 | 8.10e-27 | 102 |
| Msa1095620 | MtrunA17_Chr7g0221661 | 45.902 | 122 | 66 | 0 | 1 | 122 | 492 | 613 | 1.99e-26 | 103 |
| Msa1095620 | MtrunA17_Chr7g0233311 | 46.400 | 125 | 66 | 1 | 1 | 124 | 493 | 617 | 2.17e-26 | 103 |
| Msa1095620 | MtrunA17_Chr1g0152001 | 45.763 | 118 | 63 | 1 | 1 | 117 | 176 | 293 | 2.93e-26 | 101 |
| Msa1095620 | MtrunA17_Chr2g0298851 | 46.400 | 125 | 65 | 2 | 1 | 124 | 493 | 616 | 1.31e-25 | 101 |
| Msa1095620 | MtrunA17_Chr7g0223621 | 45.299 | 117 | 64 | 0 | 1 | 117 | 491 | 607 | 5.31e-25 | 99.8 |
| Msa1095620 | MtrunA17_Chr7g0223781 | 45.902 | 122 | 66 | 0 | 1 | 122 | 490 | 611 | 5.34e-25 | 99.8 |
| Msa1095620 | MtrunA17_Chr7g0233301 | 43.307 | 127 | 71 | 1 | 1 | 126 | 462 | 588 | 8.72e-25 | 99.4 |
| Msa1095620 | MtrunA17_Chr2g0293581 | 46.400 | 125 | 66 | 1 | 1 | 124 | 494 | 618 | 9.90e-25 | 99.0 |
| Msa1095620 | MtrunA17_Chr7g0225671 | 44.000 | 125 | 69 | 1 | 1 | 124 | 498 | 622 | 1.14e-24 | 99.0 |
| Msa1095620 | MtrunA17_Chr7g0223871 | 40.800 | 125 | 73 | 1 | 1 | 124 | 8 | 132 | 1.62e-24 | 92.4 |
| Msa1095620 | MtrunA17_Chr7g0223741 | 48.077 | 104 | 54 | 0 | 1 | 104 | 492 | 595 | 1.66e-24 | 98.6 |
| Msa1095620 | MtrunA17_Chr7g0217971 | 45.872 | 109 | 59 | 0 | 1 | 109 | 467 | 575 | 8.84e-24 | 96.3 |
| Msa1095620 | MtrunA17_Chr7g0223721 | 42.400 | 125 | 71 | 1 | 1 | 124 | 492 | 616 | 1.12e-23 | 96.3 |
| Msa1095620 | MtrunA17_Chr2g0287631 | 44.800 | 125 | 68 | 1 | 1 | 124 | 493 | 617 | 1.37e-23 | 95.9 |
| Msa1095620 | MtrunA17_Chr4g0012541 | 40.800 | 125 | 73 | 1 | 1 | 124 | 483 | 607 | 1.64e-23 | 95.5 |
| Msa1095620 | MtrunA17_Chr7g0245541 | 40.800 | 125 | 74 | 0 | 1 | 125 | 76 | 200 | 3.10e-23 | 90.5 |
| Msa1095620 | MtrunA17_Chr5g0427901 | 41.129 | 124 | 73 | 0 | 1 | 124 | 503 | 626 | 9.72e-23 | 93.6 |
| Msa1095620 | MtrunA17_Chr7g0223801 | 38.710 | 124 | 76 | 0 | 1 | 124 | 490 | 613 | 5.41e-22 | 91.3 |
| Msa1095620 | MtrunA17_Chr7g0223851 | 40.800 | 125 | 73 | 1 | 1 | 124 | 501 | 625 | 5.84e-22 | 91.3 |
| Msa1095620 | MtrunA17_Chr1g0188611 | 43.200 | 125 | 63 | 2 | 1 | 124 | 171 | 288 | 8.79e-22 | 88.6 |
| Msa1095620 | MtrunA17_Chr7g0215261 | 39.200 | 125 | 74 | 1 | 1 | 123 | 458 | 582 | 6.88e-20 | 85.1 |
| Msa1095620 | MtrunA17_Chr7g0223831 | 37.903 | 124 | 76 | 1 | 1 | 123 | 464 | 587 | 2.55e-19 | 83.6 |
| Msa1095620 | MtrunA17_Chr5g0394221 | 44.792 | 96 | 48 | 1 | 1 | 96 | 261 | 351 | 1.80e-17 | 77.8 |
| Msa1095620 | MtrunA17_Chr7g0223821 | 41.600 | 125 | 70 | 1 | 1 | 122 | 493 | 617 | 1.80e-16 | 75.5 |
| Msa1095620 | MtrunA17_Chr6g0462861 | 37.037 | 135 | 74 | 3 | 1 | 124 | 471 | 605 | 8.31e-16 | 73.6 |
| Msa1095620 | MtrunA17_Chr2g0299821 | 72.727 | 55 | 8 | 1 | 1 | 48 | 430 | 484 | 8.69e-16 | 73.6 |
| Msa1095620 | MtrunA17_Chr6g0481381 | 39.394 | 99 | 59 | 1 | 24 | 121 | 75 | 173 | 3.00e-14 | 66.6 |
| Msa1095620 | MtrunA17_Chr7g0223791 | 41.463 | 82 | 48 | 0 | 1 | 82 | 100 | 181 | 4.01e-14 | 66.2 |
| Msa1095620 | MtrunA17_Chr2g0331381 | 55.357 | 56 | 25 | 0 | 1 | 56 | 427 | 482 | 6.72e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095620 | AT3G09440.1 | 82.911 | 158 | 26 | 1 | 1 | 157 | 492 | 649 | 4.08e-82 | 254 |
| Msa1095620 | AT3G09440.4 | 82.911 | 158 | 26 | 1 | 1 | 157 | 492 | 649 | 4.08e-82 | 254 |
| Msa1095620 | AT3G09440.2 | 82.911 | 158 | 26 | 1 | 1 | 157 | 492 | 649 | 4.08e-82 | 254 |
| Msa1095620 | AT3G09440.3 | 82.911 | 158 | 26 | 1 | 1 | 157 | 492 | 649 | 4.08e-82 | 254 |
| Msa1095620 | AT3G12580.1 | 86.875 | 160 | 17 | 3 | 1 | 157 | 492 | 650 | 6.09e-81 | 251 |
| Msa1095620 | AT5G02500.1 | 81.250 | 160 | 27 | 1 | 1 | 157 | 492 | 651 | 1.03e-80 | 251 |
| Msa1095620 | AT5G02490.1 | 79.630 | 162 | 28 | 2 | 1 | 157 | 492 | 653 | 1.36e-78 | 245 |
| Msa1095620 | AT1G16030.1 | 71.069 | 159 | 41 | 2 | 1 | 157 | 491 | 646 | 2.89e-69 | 221 |
| Msa1095620 | AT5G02500.2 | 76.471 | 136 | 29 | 1 | 25 | 157 | 386 | 521 | 3.03e-61 | 197 |
| Msa1095620 | AT1G56410.1 | 75.000 | 128 | 30 | 1 | 1 | 128 | 492 | 617 | 2.04e-57 | 189 |
| Msa1095620 | AT5G42020.1 | 54.348 | 138 | 61 | 2 | 1 | 136 | 517 | 654 | 4.77e-43 | 151 |
| Msa1095620 | AT5G42020.3 | 54.348 | 138 | 61 | 2 | 1 | 136 | 522 | 659 | 6.15e-43 | 150 |
| Msa1095620 | AT5G28540.1 | 53.906 | 128 | 58 | 1 | 1 | 127 | 517 | 644 | 4.98e-40 | 142 |
| Msa1095620 | AT1G09080.1 | 47.656 | 128 | 66 | 1 | 1 | 127 | 531 | 658 | 3.30e-27 | 106 |
| Msa1095620 | AT1G09080.2 | 47.656 | 128 | 66 | 1 | 1 | 127 | 521 | 648 | 3.68e-27 | 106 |
| Msa1095620 | AT5G42020.2 | 50.562 | 89 | 42 | 2 | 50 | 136 | 511 | 599 | 5.06e-23 | 94.7 |
Find 37 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATCGACTTCTTCAATCTT+AGG | 0.220026 | 7_3:-18627632 | None:intergenic |
| AGGTGGAGGTGCTCCTGATA+TGG | 0.335554 | 7_3:+18627562 | Msa1095620:CDS |
| TGATACATCTTAGCAATGAT+TGG | 0.339938 | 7_3:-18627539 | None:intergenic |
| TCCATACCACCACCCATATC+AGG | 0.393382 | 7_3:-18627575 | None:intergenic |
| CCTCCAGCAGCAGGTGGTGC+TGG | 0.395029 | 7_3:+18627608 | Msa1095620:CDS |
| GGTTGATGCAAAGAATGCTT+TGG | 0.410300 | 7_3:+18627331 | Msa1095620:CDS |
| CGACAAAGGAAGGTTGTCTA+AGG | 0.418046 | 7_3:+18627241 | Msa1095620:CDS |
| ACAATTAAAGATGAGAAGAT+TGG | 0.425467 | 7_3:+18627380 | Msa1095620:CDS |
| TCTGCTGAAGACAAAACAAC+TGG | 0.462288 | 7_3:+18627191 | Msa1095620:CDS |
| GGTGGAGGTGCTCCTGATAT+GGG | 0.464681 | 7_3:+18627563 | Msa1095620:CDS |
| TAAGGAAGAAATTGAGAAGA+TGG | 0.466344 | 7_3:+18627259 | Msa1095620:CDS |
| ACTCATCAGCCTCTGCCAAC+TGG | 0.471841 | 7_3:-18627478 | None:intergenic |
| GGACCAGCACCACCTGCTGC+TGG | 0.476038 | 7_3:-18627611 | None:intergenic |
| TCCTGATATGGGTGGTGGTA+TGG | 0.476764 | 7_3:+18627574 | Msa1095620:CDS |
| CCTTCCTTTGTCGTTGGTGA+TGG | 0.494022 | 7_3:-18627231 | None:intergenic |
| AGAAATTGAGAAGATGGTTG+AGG | 0.504892 | 7_3:+18627265 | Msa1095620:CDS |
| TGACGCTGCAATTCAGTGGT+TGG | 0.507402 | 7_3:+18627448 | Msa1095620:CDS |
| ATCATTGCTAAGATGTATCA+AGG | 0.508198 | 7_3:+18627542 | Msa1095620:CDS |
| GATGAAGTTCCTCCAGCAGC+AGG | 0.518012 | 7_3:+18627599 | Msa1095620:CDS |
| GGTGCTCCTGATATGGGTGG+TGG | 0.533527 | 7_3:+18627569 | Msa1095620:CDS |
| TGAGTTTGAAGATAAGATGA+AGG | 0.542099 | 7_3:+18627496 | Msa1095620:CDS |
| AGACAACCTTCCTTTGTCGT+TGG | 0.545078 | 7_3:-18627237 | None:intergenic |
| GAAATACAAGGCAGAAGATG+AGG | 0.548776 | 7_3:+18627295 | Msa1095620:CDS |
| GGACAGTAACCAGTTGGCAG+AGG | 0.580101 | 7_3:+18627469 | Msa1095620:CDS |
| TAGCAATGATTGGATTGCAA+AGG | 0.581264 | 7_3:-18627529 | None:intergenic |
| CCAGCACCACCTGCTGCTGG+AGG | 0.596593 | 7_3:-18627608 | None:intergenic |
| CCATCACCAACGACAAAGGA+AGG | 0.602128 | 7_3:+18627231 | Msa1095620:CDS |
| GCTAAGATGTATCAAGGTGG+AGG | 0.602520 | 7_3:+18627548 | Msa1095620:CDS |
| AAAACTATGCTTACAACATG+AGG | 0.603991 | 7_3:+18627354 | Msa1095620:CDS |
| GTGGTTGGACAGTAACCAGT+TGG | 0.608307 | 7_3:+18627463 | Msa1095620:CDS |
| ATTACCATCACCAACGACAA+AGG | 0.613058 | 7_3:+18627227 | Msa1095620:CDS |
| TGGATCAAAGCTTTCACCAG+AGG | 0.630537 | 7_3:+18627400 | Msa1095620:CDS |
| GGAGGTGCTCCTGATATGGG+TGG | 0.636751 | 7_3:+18627566 | Msa1095620:CDS |
| TGAGGAAGCAGAGAAATACA+AGG | 0.640542 | 7_3:+18627283 | Msa1095620:CDS |
| GAAGTTCCTCCAGCAGCAGG+TGG | 0.652201 | 7_3:+18627602 | Msa1095620:CDS |
| CAATTGACGCTGCAATTCAG+TGG | 0.657113 | 7_3:+18627444 | Msa1095620:CDS |
| ATTGCTAAGATGTATCAAGG+TGG | 0.733799 | 7_3:+18627545 | Msa1095620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACAATTAAAGATGAGAAGAT+TGG | + | chr7_3:18627380-18627399 | Msa1095620:CDS | 25.0% |
| TAAGGAAGAAATTGAGAAGA+TGG | + | chr7_3:18627259-18627278 | Msa1095620:CDS | 30.0% | |
| AAAACTATGCTTACAACATG+AGG | + | chr7_3:18627354-18627373 | Msa1095620:CDS | 30.0% | |
| TGAGTTTGAAGATAAGATGA+AGG | + | chr7_3:18627496-18627515 | Msa1095620:CDS | 30.0% | |
| TGATACATCTTAGCAATGAT+TGG | - | chr7_3:18627542-18627561 | None:intergenic | 30.0% | |
| ATCATTGCTAAGATGTATCA+AGG | + | chr7_3:18627542-18627561 | Msa1095620:CDS | 30.0% | |
| ! | TAATCGACTTCTTCAATCTT+AGG | - | chr7_3:18627635-18627654 | None:intergenic | 30.0% |
| AGAAATTGAGAAGATGGTTG+AGG | + | chr7_3:18627265-18627284 | Msa1095620:CDS | 35.0% | |
| AGATGAGGAACACAAAAAGA+AGG | + | chr7_3:18627310-18627329 | Msa1095620:CDS | 35.0% | |
| ! | TCAATCTTCTTTTTGTCCTC+TGG | - | chr7_3:18627419-18627438 | None:intergenic | 35.0% |
| TAGCAATGATTGGATTGCAA+AGG | - | chr7_3:18627532-18627551 | None:intergenic | 35.0% | |
| ATTGCTAAGATGTATCAAGG+TGG | + | chr7_3:18627545-18627564 | Msa1095620:CDS | 35.0% | |
| TCTGCTGAAGACAAAACAAC+TGG | + | chr7_3:18627191-18627210 | Msa1095620:CDS | 40.0% | |
| ATTACCATCACCAACGACAA+AGG | + | chr7_3:18627227-18627246 | Msa1095620:CDS | 40.0% | |
| TGAGGAAGCAGAGAAATACA+AGG | + | chr7_3:18627283-18627302 | Msa1095620:CDS | 40.0% | |
| GAAATACAAGGCAGAAGATG+AGG | + | chr7_3:18627295-18627314 | Msa1095620:CDS | 40.0% | |
| ! | GGTTGATGCAAAGAATGCTT+TGG | + | chr7_3:18627331-18627350 | Msa1095620:CDS | 40.0% |
| AGACAACCTTCCTTTGTCGT+TGG | - | chr7_3:18627240-18627259 | None:intergenic | 45.0% | |
| CGACAAAGGAAGGTTGTCTA+AGG | + | chr7_3:18627241-18627260 | Msa1095620:CDS | 45.0% | |
| TGGATCAAAGCTTTCACCAG+AGG | + | chr7_3:18627400-18627419 | Msa1095620:CDS | 45.0% | |
| CAATTGACGCTGCAATTCAG+TGG | + | chr7_3:18627444-18627463 | Msa1095620:CDS | 45.0% | |
| GCTAAGATGTATCAAGGTGG+AGG | + | chr7_3:18627548-18627567 | Msa1095620:CDS | 45.0% | |
| ! | CCTTCCTTTGTCGTTGGTGA+TGG | - | chr7_3:18627234-18627253 | None:intergenic | 50.0% |
| CCATCACCAACGACAAAGGA+AGG | + | chr7_3:18627231-18627250 | Msa1095620:CDS | 50.0% | |
| TGACGCTGCAATTCAGTGGT+TGG | + | chr7_3:18627448-18627467 | Msa1095620:CDS | 50.0% | |
| GTGGTTGGACAGTAACCAGT+TGG | + | chr7_3:18627463-18627482 | Msa1095620:CDS | 50.0% | |
| ! | TCCTGATATGGGTGGTGGTA+TGG | + | chr7_3:18627574-18627593 | Msa1095620:CDS | 50.0% |
| TCCATACCACCACCCATATC+AGG | - | chr7_3:18627578-18627597 | None:intergenic | 50.0% | |
| GGACAGTAACCAGTTGGCAG+AGG | + | chr7_3:18627469-18627488 | Msa1095620:CDS | 55.0% | |
| ACTCATCAGCCTCTGCCAAC+TGG | - | chr7_3:18627481-18627500 | None:intergenic | 55.0% | |
| !! | AGGTGGAGGTGCTCCTGATA+TGG | + | chr7_3:18627562-18627581 | Msa1095620:CDS | 55.0% |
| !! | GGTGGAGGTGCTCCTGATAT+GGG | + | chr7_3:18627563-18627582 | Msa1095620:CDS | 55.0% |
| GATGAAGTTCCTCCAGCAGC+AGG | + | chr7_3:18627599-18627618 | Msa1095620:CDS | 55.0% | |
| !! | GGAGGTGCTCCTGATATGGG+TGG | + | chr7_3:18627566-18627585 | Msa1095620:CDS | 60.0% |
| GGTGCTCCTGATATGGGTGG+TGG | + | chr7_3:18627569-18627588 | Msa1095620:CDS | 60.0% | |
| GAAGTTCCTCCAGCAGCAGG+TGG | + | chr7_3:18627602-18627621 | Msa1095620:CDS | 60.0% | |
| CCAGCACCACCTGCTGCTGG+AGG | - | chr7_3:18627611-18627630 | None:intergenic | 70.0% | |
| CCTCCAGCAGCAGGTGGTGC+TGG | + | chr7_3:18627608-18627627 | Msa1095620:CDS | 70.0% | |
| GGACCAGCACCACCTGCTGC+TGG | - | chr7_3:18627614-18627633 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 18627182 | 18627655 | 18627182 | ID=Msa1095620;Name=Msa1095620 |
| chr7_3 | mRNA | 18627182 | 18627655 | 18627182 | ID=Msa1095620-mRNA-1;Parent=Msa1095620;Name=Msa1095620-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|157 |
| chr7_3 | exon | 18627182 | 18627655 | 18627182 | ID=Msa1095620-mRNA-1:exon:4024;Parent=Msa1095620-mRNA-1 |
| chr7_3 | CDS | 18627182 | 18627655 | 18627182 | ID=Msa1095620-mRNA-1:cds;Parent=Msa1095620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
