AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588220 MtrunA17_Chr4g0004271 97.351 151 4 0 1 151 1 151 3.94e-104 298
Msa0588220 MtrunA17_Chr1g0173051 74.432 176 27 3 1 158 1 176 2.96e-75 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588220 AT1G79985.3 73.333 150 40 0 1 150 1 150 7.46e-80 236
Msa0588220 AT1G79985.2 73.333 150 40 0 1 150 1 150 7.46e-80 236
Msa0588220 AT1G79985.1 73.333 150 40 0 1 150 1 150 7.46e-80 236

Find 110 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGAGAAATGGAAAATT+TGG 0.122158 4_2:+10402355 None:intergenic
AGAATTGCGCCATTGATTTA+AGG 0.154339 4_2:-10401906 Msa0588220:five_prime_UTR
CGAATTGTTGGAGAGAAAAT+TGG 0.203685 4_2:+10402308 None:intergenic
GCCATTGATTTAAGGAATTT+TGG 0.208453 4_2:-10401898 Msa0588220:five_prime_UTR
CTTTAAGCTTGCTTGTTTAC+TGG 0.261774 4_2:-10400087 Msa0588220:three_prime_UTR
GCTCTTTCAGATCTGGATTC+TGG 0.262699 4_2:+10402124 None:intergenic
ATTCATGAGATTTATGTAAC+TGG 0.274697 4_2:-10401972 Msa0588220:five_prime_UTR
TAAACGCAACAACCTTGATT+TGG 0.305184 4_2:-10402075 Msa0588220:five_prime_UTR
TGTAACGGGGTCGGTGTGAT+TGG 0.311389 4_2:-10401814 Msa0588220:five_prime_UTR
GTTACTACCTCTACCGTTAC+TGG 0.315654 4_2:-10401520 Msa0588220:CDS
GATTTGAGTGGCTTCTTTAG+AGG 0.333482 4_2:-10401946 Msa0588220:five_prime_UTR
TCTCTTCCAGCGATGGGAAT+TGG 0.341892 4_2:+10402336 None:intergenic
GAATTGTTGGAGAGAAAATT+GGG 0.343573 4_2:+10402309 None:intergenic
TGTCAAACTCAATTTACATT+AGG 0.344650 4_2:-10400425 Msa0588220:CDS
GATTTGGGAATTTGAAGATT+TGG 0.345439 4_2:-10401742 Msa0588220:five_prime_UTR
TGTTCACGCTCTTTCAGATC+TGG 0.358330 4_2:+10402117 None:intergenic
GTGAACAATTGTTTGCGTTT+TGG 0.358695 4_2:-10402101 Msa0588220:five_prime_UTR
CTTAAAGTCCCATGAGTTAG+AGG 0.367240 4_2:+10400103 None:intergenic
AAACGCAACAACCTTGATTT+GGG 0.368656 4_2:-10402074 Msa0588220:five_prime_UTR
TCAAAGTAGGTTCTTAAGAT+TGG 0.368666 4_2:-10400269 Msa0588220:three_prime_UTR
TGGGTAGGAGTCATGTTCTA+TGG 0.369373 4_2:-10401691 Msa0588220:exon
TGGTACTGGAATTGCCTTGA+TGG 0.369598 4_2:-10400663 Msa0588220:CDS
TGGAGAGAAATGGAAAATTT+GGG 0.373158 4_2:+10402356 None:intergenic
CTTGAACGATGTCGTGGTAT+TGG 0.382374 4_2:+10400593 None:intergenic
TGTCAGCCAAACGTCCAAAA+AGG 0.389319 4_2:+10400558 None:intergenic
ATTGCCTTGATGGCTTTGTT+AGG 0.392872 4_2:-10400653 Msa0588220:CDS
TGTTCTATGGTGCAGTGGTA+TGG 0.393958 4_2:-10401678 Msa0588220:CDS
ACAAGAAGATTGATTGAGTT+GGG 0.397108 4_2:-10400322 Msa0588220:exon
TTCATACCTTATGTATAAGT+TGG 0.403300 4_2:-10400204 Msa0588220:three_prime_UTR
TCAGACTTGATGTGTCGTTT+TGG 0.405765 4_2:+10402413 None:intergenic
TTCTCTCCAATTCCCATCGC+TGG 0.405879 4_2:-10402342 Msa0588220:five_prime_UTR
TTCTCAGGATTCTTCATTCA+CGG 0.411235 4_2:-10402188 Msa0588220:intron
ATTGTTGAGATTTATGTAAC+GGG 0.416016 4_2:-10401828 Msa0588220:five_prime_UTR
TCACTTCTTGATGATGGATC+GGG 0.423569 4_2:+10400243 None:intergenic
TGGATCTCACTTCTTGATGA+TGG 0.424615 4_2:+10400237 None:intergenic
CTGATAGTGGCGGTTATTGA+TGG 0.427339 4_2:-10400127 Msa0588220:three_prime_UTR
CTCACTTCTTGATGATGGAT+CGG 0.432839 4_2:+10400242 None:intergenic
CGATGGGAATTGGAGAGAAA+TGG 0.433138 4_2:+10402346 None:intergenic
GACAAGAAGATTGATTGAGT+TGG 0.433284 4_2:-10400323 Msa0588220:exon
TTTCTGCTCAGCTCAGCTGC+AGG 0.434477 4_2:-10401478 Msa0588220:CDS
CTTTGCATATGCATAGTGTA+TGG 0.436074 4_2:-10400722 Msa0588220:CDS
ACCAAAATTCCTTAAATCAA+TGG 0.436729 4_2:+10401897 None:intergenic
TTGTTGGCACTCGCGTTTCT+CGG 0.438989 4_2:-10401576 Msa0588220:CDS
GAAGGAAAGGAACGAATTGT+TGG 0.445290 4_2:+10402296 None:intergenic
GTGTATCAGACGCGAACTCC+GGG 0.458405 4_2:-10400621 Msa0588220:CDS
TTATTCTTAACCGTTCTTGT+TGG 0.460095 4_2:-10401592 Msa0588220:CDS
TTGTCCTCAAGGTGAAGGTT+AGG 0.463159 4_2:+10400157 None:intergenic
GAGAAGGAAGAGATGAATGA+AGG 0.463291 4_2:-10400065 Msa0588220:three_prime_UTR
TGTGTATCAGACGCGAACTC+CGG 0.466713 4_2:-10400622 Msa0588220:CDS
GTAACGGGGTCGGTGTGATT+GGG 0.468526 4_2:-10401813 Msa0588220:five_prime_UTR
TCATATAGTACATACATTGT+AGG 0.471364 4_2:+10401623 None:intergenic
GACAGCTTAAACATATATGC+AGG 0.477523 4_2:+10400444 None:intergenic
GCTTGCTTGTTTACTGGAGA+AGG 0.477655 4_2:-10400081 Msa0588220:three_prime_UTR
TGAAAGATCGAAGAAGTGCT+TGG 0.483444 4_2:-10400774 Msa0588220:CDS
TGGTGGATTGTGAATGGTAC+TGG 0.492493 4_2:-10400677 Msa0588220:CDS
GTTCTATGGTGCAGTGGTAT+GGG 0.496724 4_2:-10401677 Msa0588220:CDS
CATAAGCAAAACGACAAAGC+AGG 0.497394 4_2:-10402438 None:intergenic
CGAGGACCAACTTATACATA+AGG 0.504929 4_2:+10400198 None:intergenic
AATTGTTGAGATTTATGTAA+CGG 0.509398 4_2:-10401829 Msa0588220:five_prime_UTR
ATTGATGGGCCTCTAACTCA+TGG 0.517924 4_2:-10400112 Msa0588220:three_prime_UTR
TTCACCTAACAAAGCCATCA+AGG 0.522127 4_2:+10400649 None:intergenic
GTGCAGTGGTATGGGACCCT+TGG 0.525907 4_2:-10401669 Msa0588220:CDS
TCAGATCTGGATTCTGGAAG+CGG 0.526484 4_2:+10402130 None:intergenic
GTTGGCCCTCTTCTATAGCA+TGG 0.527449 4_2:-10400697 Msa0588220:CDS
AAGGTATGAAAATGTCTACT+TGG 0.527784 4_2:+10400217 None:intergenic
TTTGCATATGCATAGTGTAT+GGG 0.529555 4_2:-10400721 Msa0588220:CDS
GTCAATTCTAATATCAAAGT+AGG 0.537189 4_2:-10400282 Msa0588220:three_prime_UTR
TTGCATATGCATAGTGTATG+GGG 0.538256 4_2:-10400720 Msa0588220:CDS
TCAGTGTAGCCTTGTCCTCA+AGG 0.538377 4_2:+10400146 None:intergenic
TTCATGAGATTTATGTAACT+GGG 0.544578 4_2:-10401971 Msa0588220:five_prime_UTR
AGAAGGAAGAGATGAATGAA+GGG 0.549299 4_2:-10400064 Msa0588220:three_prime_UTR
GAAGATTGATTGAGTTGGGA+AGG 0.550454 4_2:-10400318 Msa0588220:exon
GGACAAGGCTACACTGATAG+TGG 0.555952 4_2:-10400140 Msa0588220:three_prime_UTR
TGTAACTGGGTTGATTTGAG+TGG 0.559692 4_2:-10401958 Msa0588220:five_prime_UTR
TGATAGTGGCGGTTATTGAT+GGG 0.560418 4_2:-10400126 Msa0588220:three_prime_UTR
AACGCGAGTGCCAACAAGAA+CGG 0.560798 4_2:+10401582 None:intergenic
TAACCTTCACCTTGAGGACA+AGG 0.563082 4_2:-10400155 Msa0588220:three_prime_UTR
GTCGTGGTATTGGTATCTCC+CGG 0.571200 4_2:+10400603 None:intergenic
TGAGATTTATGTAACGGGGT+CGG 0.571999 4_2:-10401823 Msa0588220:five_prime_UTR
TAGAATTGACACTGAATACA+AGG 0.578050 4_2:+10400295 None:intergenic
TGTATGTACTATATGACACT+TGG 0.580497 4_2:-10401616 Msa0588220:CDS
ATAAGCAAAACGACAAAGCA+GGG 0.580994 4_2:-10402437 None:intergenic
CAATTTACATTAGGAATCGT+AGG 0.581355 4_2:-10400416 Msa0588220:CDS
TTCTGCTCAGCTCAGCTGCA+GGG 0.583677 4_2:-10401477 Msa0588220:intron
CTACCTCTACCGTTACTGGT+TGG 0.588096 4_2:-10401516 Msa0588220:CDS
GGTGTGATTGGGTGTTATAG+AGG 0.590832 4_2:-10401802 Msa0588220:five_prime_UTR
GAAGGAAGAGATGAATGAAG+GGG 0.591107 4_2:-10400063 Msa0588220:three_prime_UTR
AATTGTTGGAGAGAAAATTG+GGG 0.598800 4_2:+10402310 None:intergenic
TTCTTACTTGAACGATGTCG+TGG 0.599586 4_2:+10400587 None:intergenic
TTGATGGGCCTCTAACTCAT+GGG 0.604128 4_2:-10400111 Msa0588220:three_prime_UTR
ATTTGAGCAACAATAAGCCA+AGG 0.604789 4_2:+10401652 None:intergenic
AAGGAAGAGATGAATGAAGG+GGG 0.606952 4_2:-10400062 Msa0588220:three_prime_UTR
TAGCCTTGTCCTCAAGGTGA+AGG 0.607556 4_2:+10400152 None:intergenic
GCACCAACCAGTAACGGTAG+AGG 0.611639 4_2:+10401513 None:intergenic
AATCCACCATGCTATAGAAG+AGG 0.617029 4_2:+10400691 None:intergenic
ACAAACGCACCAACCAGTAA+CGG 0.617832 4_2:+10401507 None:intergenic
AAGATGAATGATATAGATAG+TGG 0.619472 4_2:+10400742 None:intergenic
ATAGCATGGTGGATTGTGAA+TGG 0.621592 4_2:-10400683 Msa0588220:CDS
ATTCTGGAAGCGGTAACTGA+AGG 0.621770 4_2:+10402140 None:intergenic
CACTTCTTGATGATGGATCG+GGG 0.632891 4_2:+10400244 None:intergenic
ATCCACCATGCTATAGAAGA+GGG 0.645783 4_2:+10400692 None:intergenic
AGTCATGTTCTATGGTGCAG+TGG 0.646387 4_2:-10401683 Msa0588220:exon
GGCCCTCTTCTATAGCATGG+TGG 0.646658 4_2:-10400694 Msa0588220:CDS
TGCATATGCATAGTGTATGG+GGG 0.648545 4_2:-10400719 Msa0588220:CDS
AGTAACGGTAGAGGTAGTAA+CGG 0.658848 4_2:+10401522 None:intergenic
TTTGAGCAACAATAAGCCAA+GGG 0.678329 4_2:+10401653 None:intergenic
TTGTTGAGATTTATGTAACG+GGG 0.679252 4_2:-10401827 Msa0588220:five_prime_UTR
CATAGTCAAAGAAATACACA+AGG 0.683900 4_2:+10401548 None:intergenic
CAAGGCTACACTGATAGTGG+CGG 0.702270 4_2:-10400137 Msa0588220:three_prime_UTR
AAAACAGTCAAAGAAACACG+AGG 0.767468 4_2:+10400180 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAGATTTTTTCAATTTTA+TGG + chr4_2:10400265-10400284 None:intergenic 15.0%
!!! AAAGTTTAAGTTTTTAGAAT+TGG - chr4_2:10400700-10400719 Msa0588220:CDS 15.0%
!!! AAGTTTAAGTTTTTAGAATT+GGG - chr4_2:10400701-10400720 Msa0588220:CDS 15.0%
!! ATTATATGGATTTCAAAAAT+AGG + chr4_2:10401482-10401501 None:intergenic 15.0%
!!! TGAAATCCATATAATTTTAA+TGG - chr4_2:10401487-10401506 Msa0588220:CDS 15.0%
!!! TGAAGATTTTTTCAATTTTA+TGG + chr4_2:10400265-10400284 None:intergenic 15.0%
!!! AAAGTTTAAGTTTTTAGAAT+TGG - chr4_2:10400700-10400719 Msa0588220:CDS 15.0%
!!! AAGTTTAAGTTTTTAGAATT+GGG - chr4_2:10400701-10400720 Msa0588220:CDS 15.0%
!! ATTATATGGATTTCAAAAAT+AGG + chr4_2:10401482-10401501 None:intergenic 15.0%
!!! TGAAATCCATATAATTTTAA+TGG - chr4_2:10401487-10401506 Msa0588220:CDS 15.0%
!!! AATTTTATGGCAATTGTTTA+TGG + chr4_2:10400252-10400271 None:intergenic 20.0%
!!! AAAAATCTTCAATTTTTCTC+AGG - chr4_2:10400274-10400293 Msa0588220:three_prime_UTR 20.0%
!! TTAAAAAAAATCCCAAATCA+AGG + chr4_2:10400417-10400436 None:intergenic 20.0%
!!! TTAAAACTGTTTTAAGCAAT+TGG - chr4_2:10400433-10400452 Msa0588220:CDS 20.0%
!!! TAAAACTGTTTTAAGCAATT+GGG - chr4_2:10400434-10400453 Msa0588220:CDS 20.0%
!! AATTGTTGAGATTTATGTAA+CGG - chr4_2:10400648-10400667 Msa0588220:CDS 20.0%
!!! TGAGAATTTTTGTTTGTTTT+GGG - chr4_2:10400767-10400786 Msa0588220:CDS 20.0%
!! TCTCAACCATTAAAATTATA+TGG + chr4_2:10401496-10401515 None:intergenic 20.0%
!! TTTATTAATCCTGTCAAATA+TGG - chr4_2:10401516-10401535 Msa0588220:CDS 20.0%
!! TGTCTATTAAAAAAATCCAT+GGG + chr4_2:10402138-10402157 None:intergenic 20.0%
!! TTGTCTATTAAAAAAATCCA+TGG + chr4_2:10402139-10402158 None:intergenic 20.0%
!!! AATTTTATGGCAATTGTTTA+TGG + chr4_2:10400252-10400271 None:intergenic 20.0%
!!! AAAAATCTTCAATTTTTCTC+AGG - chr4_2:10400274-10400293 Msa0588220:three_prime_UTR 20.0%
!! TTAAAAAAAATCCCAAATCA+AGG + chr4_2:10400417-10400436 None:intergenic 20.0%
!!! TTAAAACTGTTTTAAGCAAT+TGG - chr4_2:10400433-10400452 Msa0588220:CDS 20.0%
!!! TAAAACTGTTTTAAGCAATT+GGG - chr4_2:10400434-10400453 Msa0588220:CDS 20.0%
!! AATTGTTGAGATTTATGTAA+CGG - chr4_2:10400648-10400667 Msa0588220:CDS 20.0%
!!! TGAGAATTTTTGTTTGTTTT+GGG - chr4_2:10400767-10400786 Msa0588220:CDS 20.0%
!! TCTCAACCATTAAAATTATA+TGG + chr4_2:10401496-10401515 None:intergenic 20.0%
!! TTTATTAATCCTGTCAAATA+TGG - chr4_2:10401516-10401535 Msa0588220:CDS 20.0%
!! TGTCTATTAAAAAAATCCAT+GGG + chr4_2:10402138-10402157 None:intergenic 20.0%
!! TTGTCTATTAAAAAAATCCA+TGG + chr4_2:10402139-10402158 None:intergenic 20.0%
! GAAAAATATACAGAGATTGA+TGG + chr4_2:10400224-10400243 None:intergenic 25.0%
!!! AAAACTGTTTTAAGCAATTG+GGG - chr4_2:10400435-10400454 Msa0588220:CDS 25.0%
!! TTATGTAATGAAGAGTTTTG+TGG - chr4_2:10400477-10400496 Msa0588220:CDS 25.0%
! ATTCATGAGATTTATGTAAC+TGG - chr4_2:10400505-10400524 Msa0588220:CDS 25.0%
! TTCATGAGATTTATGTAACT+GGG - chr4_2:10400506-10400525 Msa0588220:CDS 25.0%
! ACCAAAATTCCTTAAATCAA+TGG + chr4_2:10400583-10400602 None:intergenic 25.0%
! ATTGTTGAGATTTATGTAAC+GGG - chr4_2:10400649-10400668 Msa0588220:CDS 25.0%
!!! GTGAGAATTTTTGTTTGTTT+TGG - chr4_2:10400766-10400785 Msa0588220:CDS 25.0%
!!! AATTTTTGTTTGTTTTGGGT+AGG - chr4_2:10400771-10400790 Msa0588220:CDS 25.0%
! TCATATAGTACATACATTGT+AGG + chr4_2:10400857-10400876 None:intergenic 25.0%
! TGCTTGGAATGTAAAAATAT+GGG - chr4_2:10401398-10401417 Msa0588220:intron 25.0%
!!! ATATGGGATTTGATTTGATT+TGG - chr4_2:10401414-10401433 Msa0588220:intron 25.0%
! TATGTAATTACTTTGTGTAG+AGG - chr4_2:10401549-10401568 Msa0588220:CDS 25.0%
! TTACCTGTTATTCTCATATA+TGG - chr4_2:10401593-10401612 Msa0588220:CDS 25.0%
! AAACCATATATGAGAATAAC+AGG + chr4_2:10401599-10401618 None:intergenic 25.0%
! AAGATGAATGATATAGATAG+TGG + chr4_2:10401738-10401757 None:intergenic 25.0%
! TGTCAAACTCAATTTACATT+AGG - chr4_2:10402052-10402071 Msa0588220:five_prime_UTR 25.0%
! GTCTATTAAAAAAATCCATG+GGG + chr4_2:10402137-10402156 None:intergenic 25.0%
! GTCAATTCTAATATCAAAGT+AGG - chr4_2:10402195-10402214 Msa0588220:intron 25.0%
! TTCATACCTTATGTATAAGT+TGG - chr4_2:10402273-10402292 Msa0588220:intron 25.0%
! GAAAAATATACAGAGATTGA+TGG + chr4_2:10400224-10400243 None:intergenic 25.0%
!!! AAAACTGTTTTAAGCAATTG+GGG - chr4_2:10400435-10400454 Msa0588220:CDS 25.0%
!! TTATGTAATGAAGAGTTTTG+TGG - chr4_2:10400477-10400496 Msa0588220:CDS 25.0%
! ATTCATGAGATTTATGTAAC+TGG - chr4_2:10400505-10400524 Msa0588220:CDS 25.0%
! TTCATGAGATTTATGTAACT+GGG - chr4_2:10400506-10400525 Msa0588220:CDS 25.0%
! ACCAAAATTCCTTAAATCAA+TGG + chr4_2:10400583-10400602 None:intergenic 25.0%
! ATTGTTGAGATTTATGTAAC+GGG - chr4_2:10400649-10400668 Msa0588220:CDS 25.0%
!!! GTGAGAATTTTTGTTTGTTT+TGG - chr4_2:10400766-10400785 Msa0588220:CDS 25.0%
!!! AATTTTTGTTTGTTTTGGGT+AGG - chr4_2:10400771-10400790 Msa0588220:CDS 25.0%
! TCATATAGTACATACATTGT+AGG + chr4_2:10400857-10400876 None:intergenic 25.0%
! TGCTTGGAATGTAAAAATAT+GGG - chr4_2:10401398-10401417 Msa0588220:intron 25.0%
!!! ATATGGGATTTGATTTGATT+TGG - chr4_2:10401414-10401433 Msa0588220:intron 25.0%
! TATGTAATTACTTTGTGTAG+AGG - chr4_2:10401549-10401568 Msa0588220:CDS 25.0%
! TTACCTGTTATTCTCATATA+TGG - chr4_2:10401593-10401612 Msa0588220:CDS 25.0%
! AAACCATATATGAGAATAAC+AGG + chr4_2:10401599-10401618 None:intergenic 25.0%
! AAGATGAATGATATAGATAG+TGG + chr4_2:10401738-10401757 None:intergenic 25.0%
! TGTCAAACTCAATTTACATT+AGG - chr4_2:10402052-10402071 Msa0588220:five_prime_UTR 25.0%
! GTCTATTAAAAAAATCCATG+GGG + chr4_2:10402137-10402156 None:intergenic 25.0%
! GTCAATTCTAATATCAAAGT+AGG - chr4_2:10402195-10402214 Msa0588220:intron 25.0%
! TTCATACCTTATGTATAAGT+TGG - chr4_2:10402273-10402292 Msa0588220:intron 25.0%
TGGAGAGAAATGGAAAATTT+GGG + chr4_2:10400124-10400143 None:intergenic 30.0%
TTGGAGAGAAATGGAAAATT+TGG + chr4_2:10400125-10400144 None:intergenic 30.0%
AATTGTTGGAGAGAAAATTG+GGG + chr4_2:10400170-10400189 None:intergenic 30.0%
GAATTGTTGGAGAGAAAATT+GGG + chr4_2:10400171-10400190 None:intergenic 30.0%
! TTCCTTTCCTTCTCAATTTT+TGG - chr4_2:10400192-10400211 Msa0588220:three_prime_UTR 30.0%
TACCAAAAATTGAGAAGGAA+AGG + chr4_2:10400197-10400216 None:intergenic 30.0%
GAACTTACCAAAAATTGAGA+AGG + chr4_2:10400202-10400221 None:intergenic 30.0%
ATGGCAATTGTTTATGGAAA+GGG + chr4_2:10400246-10400265 None:intergenic 30.0%
TATGGCAATTGTTTATGGAA+AGG + chr4_2:10400247-10400266 None:intergenic 30.0%
!!! GCCATTGATTTAAGGAATTT+TGG - chr4_2:10400579-10400598 Msa0588220:CDS 30.0%
TTGTTGAGATTTATGTAACG+GGG - chr4_2:10400650-10400669 Msa0588220:CDS 30.0%
!!! TTGGGTTTTTGATTTCGATT+TGG - chr4_2:10400719-10400738 Msa0588220:CDS 30.0%
!!! TGGGTTTTTGATTTCGATTT+GGG - chr4_2:10400720-10400739 Msa0588220:CDS 30.0%
GATTTGGGAATTTGAAGATT+TGG - chr4_2:10400735-10400754 Msa0588220:CDS 30.0%
TGTATGTACTATATGACACT+TGG - chr4_2:10400861-10400880 Msa0588220:intron 30.0%
TTATTCTTAACCGTTCTTGT+TGG - chr4_2:10400885-10400904 Msa0588220:intron 30.0%
CATAGTCAAAGAAATACACA+AGG + chr4_2:10400932-10400951 None:intergenic 30.0%
CAATTACGAATTCAAGCAAT+AGG + chr4_2:10401079-10401098 None:intergenic 30.0%
CTATTGCTTGAATTCGTAAT+TGG - chr4_2:10401077-10401096 Msa0588220:intron 30.0%
TACAACAGAATGAGAACAAA+TGG + chr4_2:10401280-10401299 None:intergenic 30.0%
!! TGGTTGCACTTTTTATAGTA+TGG - chr4_2:10401301-10401320 Msa0588220:intron 30.0%
!! GGTTGCACTTTTTATAGTAT+GGG - chr4_2:10401302-10401321 Msa0588220:intron 30.0%
!! GTTGCACTTTTTATAGTATG+GGG - chr4_2:10401303-10401322 Msa0588220:intron 30.0%
GTGCTTGGAATGTAAAAATA+TGG - chr4_2:10401397-10401416 Msa0588220:intron 30.0%
GAAATCAATTCTTGTGTTTG+TGG - chr4_2:10401436-10401455 Msa0588220:intron 30.0%
TGTTTGTGGTATGTTAGAAA+AGG - chr4_2:10401450-10401469 Msa0588220:intron 30.0%
TAACAAACACCATATTTGAC+AGG + chr4_2:10401528-10401547 None:intergenic 30.0%
TAATTACTTTGTGTAGAGGA+AGG - chr4_2:10401553-10401572 Msa0588220:CDS 30.0%
AATTACTTTGTGTAGAGGAA+GGG - chr4_2:10401554-10401573 Msa0588220:CDS 30.0%
TTTGCATATGCATAGTGTAT+GGG - chr4_2:10401756-10401775 Msa0588220:five_prime_UTR 30.0%
! AGTAAGAACTTACTCCTTTT+TGG - chr4_2:10401905-10401924 Msa0588220:five_prime_UTR 30.0%
CAATTTACATTAGGAATCGT+AGG - chr4_2:10402061-10402080 Msa0588220:five_prime_UTR 30.0%
TAAAAAAATCCATGGGGATA+AGG + chr4_2:10402131-10402150 None:intergenic 30.0%
ACAAGAAGATTGATTGAGTT+GGG - chr4_2:10402155-10402174 Msa0588220:five_prime_UTR 30.0%
TAGAATTGACACTGAATACA+AGG + chr4_2:10402185-10402204 None:intergenic 30.0%
TCAAAGTAGGTTCTTAAGAT+TGG - chr4_2:10402208-10402227 Msa0588220:intron 30.0%
AAGGTATGAAAATGTCTACT+TGG + chr4_2:10402263-10402282 None:intergenic 30.0%
TGGAGAGAAATGGAAAATTT+GGG + chr4_2:10400124-10400143 None:intergenic 30.0%
TTGGAGAGAAATGGAAAATT+TGG + chr4_2:10400125-10400144 None:intergenic 30.0%
AATTGTTGGAGAGAAAATTG+GGG + chr4_2:10400170-10400189 None:intergenic 30.0%
GAATTGTTGGAGAGAAAATT+GGG + chr4_2:10400171-10400190 None:intergenic 30.0%
! TTCCTTTCCTTCTCAATTTT+TGG - chr4_2:10400192-10400211 Msa0588220:three_prime_UTR 30.0%
TACCAAAAATTGAGAAGGAA+AGG + chr4_2:10400197-10400216 None:intergenic 30.0%
GAACTTACCAAAAATTGAGA+AGG + chr4_2:10400202-10400221 None:intergenic 30.0%
ATGGCAATTGTTTATGGAAA+GGG + chr4_2:10400246-10400265 None:intergenic 30.0%
TATGGCAATTGTTTATGGAA+AGG + chr4_2:10400247-10400266 None:intergenic 30.0%
!!! GCCATTGATTTAAGGAATTT+TGG - chr4_2:10400579-10400598 Msa0588220:CDS 30.0%
TTGTTGAGATTTATGTAACG+GGG - chr4_2:10400650-10400669 Msa0588220:CDS 30.0%
!!! TTGGGTTTTTGATTTCGATT+TGG - chr4_2:10400719-10400738 Msa0588220:CDS 30.0%
!!! TGGGTTTTTGATTTCGATTT+GGG - chr4_2:10400720-10400739 Msa0588220:CDS 30.0%
GATTTGGGAATTTGAAGATT+TGG - chr4_2:10400735-10400754 Msa0588220:CDS 30.0%
TGTATGTACTATATGACACT+TGG - chr4_2:10400861-10400880 Msa0588220:intron 30.0%
TTATTCTTAACCGTTCTTGT+TGG - chr4_2:10400885-10400904 Msa0588220:intron 30.0%
CATAGTCAAAGAAATACACA+AGG + chr4_2:10400932-10400951 None:intergenic 30.0%
CAATTACGAATTCAAGCAAT+AGG + chr4_2:10401079-10401098 None:intergenic 30.0%
CTATTGCTTGAATTCGTAAT+TGG - chr4_2:10401077-10401096 Msa0588220:intron 30.0%
TACAACAGAATGAGAACAAA+TGG + chr4_2:10401280-10401299 None:intergenic 30.0%
!! TGGTTGCACTTTTTATAGTA+TGG - chr4_2:10401301-10401320 Msa0588220:intron 30.0%
!! GGTTGCACTTTTTATAGTAT+GGG - chr4_2:10401302-10401321 Msa0588220:intron 30.0%
!! GTTGCACTTTTTATAGTATG+GGG - chr4_2:10401303-10401322 Msa0588220:intron 30.0%
GTGCTTGGAATGTAAAAATA+TGG - chr4_2:10401397-10401416 Msa0588220:intron 30.0%
GAAATCAATTCTTGTGTTTG+TGG - chr4_2:10401436-10401455 Msa0588220:intron 30.0%
TGTTTGTGGTATGTTAGAAA+AGG - chr4_2:10401450-10401469 Msa0588220:intron 30.0%
TAACAAACACCATATTTGAC+AGG + chr4_2:10401528-10401547 None:intergenic 30.0%
TAATTACTTTGTGTAGAGGA+AGG - chr4_2:10401553-10401572 Msa0588220:CDS 30.0%
AATTACTTTGTGTAGAGGAA+GGG - chr4_2:10401554-10401573 Msa0588220:CDS 30.0%
TTTGCATATGCATAGTGTAT+GGG - chr4_2:10401756-10401775 Msa0588220:five_prime_UTR 30.0%
! AGTAAGAACTTACTCCTTTT+TGG - chr4_2:10401905-10401924 Msa0588220:five_prime_UTR 30.0%
CAATTTACATTAGGAATCGT+AGG - chr4_2:10402061-10402080 Msa0588220:five_prime_UTR 30.0%
TAAAAAAATCCATGGGGATA+AGG + chr4_2:10402131-10402150 None:intergenic 30.0%
ACAAGAAGATTGATTGAGTT+GGG - chr4_2:10402155-10402174 Msa0588220:five_prime_UTR 30.0%
TAGAATTGACACTGAATACA+AGG + chr4_2:10402185-10402204 None:intergenic 30.0%
TCAAAGTAGGTTCTTAAGAT+TGG - chr4_2:10402208-10402227 Msa0588220:intron 30.0%
AAGGTATGAAAATGTCTACT+TGG + chr4_2:10402263-10402282 None:intergenic 30.0%
CGAATTGTTGGAGAGAAAAT+TGG + chr4_2:10400172-10400191 None:intergenic 35.0%
TTCTCAGGATTCTTCATTCA+CGG - chr4_2:10400289-10400308 Msa0588220:three_prime_UTR 35.0%
!!! CACGGTGATTTTTTTTACAG+TGG - chr4_2:10400307-10400326 Msa0588220:three_prime_UTR 35.0%
! GTGAACAATTGTTTGCGTTT+TGG - chr4_2:10400376-10400395 Msa0588220:CDS 35.0%
TAAACGCAACAACCTTGATT+TGG - chr4_2:10400402-10400421 Msa0588220:CDS 35.0%
AAACGCAACAACCTTGATTT+GGG - chr4_2:10400403-10400422 Msa0588220:CDS 35.0%
!! AGAATTGCGCCATTGATTTA+AGG - chr4_2:10400571-10400590 Msa0588220:CDS 35.0%
TTTGAGCAACAATAAGCCAA+GGG + chr4_2:10400827-10400846 None:intergenic 35.0%
ATTTGAGCAACAATAAGCCA+AGG + chr4_2:10400828-10400847 None:intergenic 35.0%
GTTATGACTTTCTGTGTGTT+TGG - chr4_2:10401131-10401150 Msa0588220:intron 35.0%
TTGTTCTCATTCTGTTGTAC+TGG - chr4_2:10401281-10401300 Msa0588220:intron 35.0%
GGGAATGAAACAAACAAGTT+AGG - chr4_2:10401323-10401342 Msa0588220:intron 35.0%
!! CGAAGGTATCTCTATCAAAA+AGG + chr4_2:10401356-10401375 None:intergenic 35.0%
TGATAGAGATACCTTCGTTT+AGG - chr4_2:10401359-10401378 Msa0588220:intron 35.0%
GATAGAGATACCTTCGTTTA+GGG - chr4_2:10401360-10401379 Msa0588220:intron 35.0%
ACATTAACTTCCCTAAACGA+AGG + chr4_2:10401373-10401392 None:intergenic 35.0%
CTTTGCATATGCATAGTGTA+TGG - chr4_2:10401755-10401774 Msa0588220:five_prime_UTR 35.0%
TTGCATATGCATAGTGTATG+GGG - chr4_2:10401757-10401776 Msa0588220:five_prime_UTR 35.0%
GACAGCTTAAACATATATGC+AGG + chr4_2:10402036-10402055 None:intergenic 35.0%
!!! CTTTTTTTTCCTTATCCCCA+TGG - chr4_2:10402119-10402138 Msa0588220:five_prime_UTR 35.0%
GACAAGAAGATTGATTGAGT+TGG - chr4_2:10402154-10402173 Msa0588220:five_prime_UTR 35.0%
AAAACAGTCAAAGAAACACG+AGG + chr4_2:10402300-10402319 None:intergenic 35.0%
! CTTTAAGCTTGCTTGTTTAC+TGG - chr4_2:10402390-10402409 Msa0588220:five_prime_UTR 35.0%
AGAAGGAAGAGATGAATGAA+GGG - chr4_2:10402413-10402432 Msa0588220:five_prime_UTR 35.0%
CGAATTGTTGGAGAGAAAAT+TGG + chr4_2:10400172-10400191 None:intergenic 35.0%
TTCTCAGGATTCTTCATTCA+CGG - chr4_2:10400289-10400308 Msa0588220:three_prime_UTR 35.0%
!!! CACGGTGATTTTTTTTACAG+TGG - chr4_2:10400307-10400326 Msa0588220:three_prime_UTR 35.0%
! GTGAACAATTGTTTGCGTTT+TGG - chr4_2:10400376-10400395 Msa0588220:CDS 35.0%
TAAACGCAACAACCTTGATT+TGG - chr4_2:10400402-10400421 Msa0588220:CDS 35.0%
AAACGCAACAACCTTGATTT+GGG - chr4_2:10400403-10400422 Msa0588220:CDS 35.0%
!! AGAATTGCGCCATTGATTTA+AGG - chr4_2:10400571-10400590 Msa0588220:CDS 35.0%
TTTGAGCAACAATAAGCCAA+GGG + chr4_2:10400827-10400846 None:intergenic 35.0%
ATTTGAGCAACAATAAGCCA+AGG + chr4_2:10400828-10400847 None:intergenic 35.0%
GTTATGACTTTCTGTGTGTT+TGG - chr4_2:10401131-10401150 Msa0588220:intron 35.0%
TTGTTCTCATTCTGTTGTAC+TGG - chr4_2:10401281-10401300 Msa0588220:intron 35.0%
GGGAATGAAACAAACAAGTT+AGG - chr4_2:10401323-10401342 Msa0588220:intron 35.0%
!! CGAAGGTATCTCTATCAAAA+AGG + chr4_2:10401356-10401375 None:intergenic 35.0%
TGATAGAGATACCTTCGTTT+AGG - chr4_2:10401359-10401378 Msa0588220:intron 35.0%
GATAGAGATACCTTCGTTTA+GGG - chr4_2:10401360-10401379 Msa0588220:intron 35.0%
ACATTAACTTCCCTAAACGA+AGG + chr4_2:10401373-10401392 None:intergenic 35.0%
CTTTGCATATGCATAGTGTA+TGG - chr4_2:10401755-10401774 Msa0588220:five_prime_UTR 35.0%
TTGCATATGCATAGTGTATG+GGG - chr4_2:10401757-10401776 Msa0588220:five_prime_UTR 35.0%
GACAGCTTAAACATATATGC+AGG + chr4_2:10402036-10402055 None:intergenic 35.0%
!!! CTTTTTTTTCCTTATCCCCA+TGG - chr4_2:10402119-10402138 Msa0588220:five_prime_UTR 35.0%
GACAAGAAGATTGATTGAGT+TGG - chr4_2:10402154-10402173 Msa0588220:five_prime_UTR 35.0%
AAAACAGTCAAAGAAACACG+AGG + chr4_2:10402300-10402319 None:intergenic 35.0%
! CTTTAAGCTTGCTTGTTTAC+TGG - chr4_2:10402390-10402409 Msa0588220:five_prime_UTR 35.0%
AGAAGGAAGAGATGAATGAA+GGG - chr4_2:10402413-10402432 Msa0588220:five_prime_UTR 35.0%
!!! TCAGACTTGATGTGTCGTTT+TGG + chr4_2:10400067-10400086 None:intergenic 40.0%
GAAGGAAAGGAACGAATTGT+TGG + chr4_2:10400184-10400203 None:intergenic 40.0%
!! TGTAACTGGGTTGATTTGAG+TGG - chr4_2:10400519-10400538 Msa0588220:CDS 40.0%
GATTTGAGTGGCTTCTTTAG+AGG - chr4_2:10400531-10400550 Msa0588220:CDS 40.0%
! TGAGATTTATGTAACGGGGT+CGG - chr4_2:10400654-10400673 Msa0588220:CDS 40.0%
AGTAACGGTAGAGGTAGTAA+CGG + chr4_2:10400958-10400977 None:intergenic 40.0%
TACTAGTACAGTGAGAAAGG+TGG + chr4_2:10401040-10401059 None:intergenic 40.0%
AGCTACTAGTACAGTGAGAA+AGG + chr4_2:10401043-10401062 None:intergenic 40.0%
AATAACCCCAAGCTTGTAAG+TGG - chr4_2:10401238-10401257 Msa0588220:intron 40.0%
ATAACCCCAAGCTTGTAAGT+GGG - chr4_2:10401239-10401258 Msa0588220:intron 40.0%
GAAGTTAATGTGTCTGTGCT+TGG - chr4_2:10401382-10401401 Msa0588220:intron 40.0%
!! TGAAAGATCGAAGAAGTGCT+TGG - chr4_2:10401703-10401722 Msa0588220:five_prime_UTR 40.0%
TGCATATGCATAGTGTATGG+GGG - chr4_2:10401758-10401777 Msa0588220:five_prime_UTR 40.0%
ATCCACCATGCTATAGAAGA+GGG + chr4_2:10401788-10401807 None:intergenic 40.0%
AATCCACCATGCTATAGAAG+AGG + chr4_2:10401789-10401808 None:intergenic 40.0%
!! ATAGCATGGTGGATTGTGAA+TGG - chr4_2:10401794-10401813 Msa0588220:five_prime_UTR 40.0%
!! ATTGCCTTGATGGCTTTGTT+AGG - chr4_2:10401824-10401843 Msa0588220:five_prime_UTR 40.0%
TTCACCTAACAAAGCCATCA+AGG + chr4_2:10401831-10401850 None:intergenic 40.0%
TTCTTACTTGAACGATGTCG+TGG + chr4_2:10401893-10401912 None:intergenic 40.0%
! CTTACTCCTTTTTGGACGTT+TGG - chr4_2:10401913-10401932 Msa0588220:five_prime_UTR 40.0%
!! GAAGATTGATTGAGTTGGGA+AGG - chr4_2:10402159-10402178 Msa0588220:five_prime_UTR 40.0%
!! TCACTTCTTGATGATGGATC+GGG + chr4_2:10402237-10402256 None:intergenic 40.0%
!! CTCACTTCTTGATGATGGAT+CGG + chr4_2:10402238-10402257 None:intergenic 40.0%
TGGATCTCACTTCTTGATGA+TGG + chr4_2:10402243-10402262 None:intergenic 40.0%
CGAGGACCAACTTATACATA+AGG + chr4_2:10402282-10402301 None:intergenic 40.0%
! TTTTCCTAACCTTCACCTTG+AGG - chr4_2:10402316-10402335 Msa0588220:five_prime_UTR 40.0%
!! TGATAGTGGCGGTTATTGAT+GGG - chr4_2:10402351-10402370 Msa0588220:five_prime_UTR 40.0%
CTTAAAGTCCCATGAGTTAG+AGG + chr4_2:10402377-10402396 None:intergenic 40.0%
GAGAAGGAAGAGATGAATGA+AGG - chr4_2:10402412-10402431 Msa0588220:five_prime_UTR 40.0%
GAAGGAAGAGATGAATGAAG+GGG - chr4_2:10402414-10402433 Msa0588220:five_prime_UTR 40.0%
AAGGAAGAGATGAATGAAGG+GGG - chr4_2:10402415-10402434 Msa0588220:five_prime_UTR 40.0%
!!! TCAGACTTGATGTGTCGTTT+TGG + chr4_2:10400067-10400086 None:intergenic 40.0%
GAAGGAAAGGAACGAATTGT+TGG + chr4_2:10400184-10400203 None:intergenic 40.0%
!! TGTAACTGGGTTGATTTGAG+TGG - chr4_2:10400519-10400538 Msa0588220:CDS 40.0%
GATTTGAGTGGCTTCTTTAG+AGG - chr4_2:10400531-10400550 Msa0588220:CDS 40.0%
! TGAGATTTATGTAACGGGGT+CGG - chr4_2:10400654-10400673 Msa0588220:CDS 40.0%
AGTAACGGTAGAGGTAGTAA+CGG + chr4_2:10400958-10400977 None:intergenic 40.0%
TACTAGTACAGTGAGAAAGG+TGG + chr4_2:10401040-10401059 None:intergenic 40.0%
AGCTACTAGTACAGTGAGAA+AGG + chr4_2:10401043-10401062 None:intergenic 40.0%
AATAACCCCAAGCTTGTAAG+TGG - chr4_2:10401238-10401257 Msa0588220:intron 40.0%
ATAACCCCAAGCTTGTAAGT+GGG - chr4_2:10401239-10401258 Msa0588220:intron 40.0%
GAAGTTAATGTGTCTGTGCT+TGG - chr4_2:10401382-10401401 Msa0588220:intron 40.0%
!! TGAAAGATCGAAGAAGTGCT+TGG - chr4_2:10401703-10401722 Msa0588220:five_prime_UTR 40.0%
TGCATATGCATAGTGTATGG+GGG - chr4_2:10401758-10401777 Msa0588220:five_prime_UTR 40.0%
ATCCACCATGCTATAGAAGA+GGG + chr4_2:10401788-10401807 None:intergenic 40.0%
AATCCACCATGCTATAGAAG+AGG + chr4_2:10401789-10401808 None:intergenic 40.0%
!! ATAGCATGGTGGATTGTGAA+TGG - chr4_2:10401794-10401813 Msa0588220:five_prime_UTR 40.0%
!! ATTGCCTTGATGGCTTTGTT+AGG - chr4_2:10401824-10401843 Msa0588220:five_prime_UTR 40.0%
TTCACCTAACAAAGCCATCA+AGG + chr4_2:10401831-10401850 None:intergenic 40.0%
TTCTTACTTGAACGATGTCG+TGG + chr4_2:10401893-10401912 None:intergenic 40.0%
! CTTACTCCTTTTTGGACGTT+TGG - chr4_2:10401913-10401932 Msa0588220:five_prime_UTR 40.0%
!! GAAGATTGATTGAGTTGGGA+AGG - chr4_2:10402159-10402178 Msa0588220:five_prime_UTR 40.0%
!! TCACTTCTTGATGATGGATC+GGG + chr4_2:10402237-10402256 None:intergenic 40.0%
!! CTCACTTCTTGATGATGGAT+CGG + chr4_2:10402238-10402257 None:intergenic 40.0%
TGGATCTCACTTCTTGATGA+TGG + chr4_2:10402243-10402262 None:intergenic 40.0%
CGAGGACCAACTTATACATA+AGG + chr4_2:10402282-10402301 None:intergenic 40.0%
! TTTTCCTAACCTTCACCTTG+AGG - chr4_2:10402316-10402335 Msa0588220:five_prime_UTR 40.0%
!! TGATAGTGGCGGTTATTGAT+GGG - chr4_2:10402351-10402370 Msa0588220:five_prime_UTR 40.0%
CTTAAAGTCCCATGAGTTAG+AGG + chr4_2:10402377-10402396 None:intergenic 40.0%
GAGAAGGAAGAGATGAATGA+AGG - chr4_2:10402412-10402431 Msa0588220:five_prime_UTR 40.0%
GAAGGAAGAGATGAATGAAG+GGG - chr4_2:10402414-10402433 Msa0588220:five_prime_UTR 40.0%
AAGGAAGAGATGAATGAAGG+GGG - chr4_2:10402415-10402434 Msa0588220:five_prime_UTR 40.0%
CGATGGGAATTGGAGAGAAA+TGG + chr4_2:10400134-10400153 None:intergenic 45.0%
! ATTCTGGAAGCGGTAACTGA+AGG + chr4_2:10400340-10400359 None:intergenic 45.0%
! TCAGATCTGGATTCTGGAAG+CGG + chr4_2:10400350-10400369 None:intergenic 45.0%
GCTCTTTCAGATCTGGATTC+TGG + chr4_2:10400356-10400375 None:intergenic 45.0%
TGTTCACGCTCTTTCAGATC+TGG + chr4_2:10400363-10400382 None:intergenic 45.0%
! GGTGTGATTGGGTGTTATAG+AGG - chr4_2:10400675-10400694 Msa0588220:CDS 45.0%
TGGGTAGGAGTCATGTTCTA+TGG - chr4_2:10400786-10400805 Msa0588220:CDS 45.0%
AGTCATGTTCTATGGTGCAG+TGG - chr4_2:10400794-10400813 Msa0588220:CDS 45.0%
TGTTCTATGGTGCAGTGGTA+TGG - chr4_2:10400799-10400818 Msa0588220:CDS 45.0%
GTTCTATGGTGCAGTGGTAT+GGG - chr4_2:10400800-10400819 Msa0588220:CDS 45.0%
GTTACTACCTCTACCGTTAC+TGG - chr4_2:10400957-10400976 Msa0588220:intron 45.0%
ACAAACGCACCAACCAGTAA+CGG + chr4_2:10400973-10400992 None:intergenic 45.0%
TACACCCACTTACAAGCTTG+GGG + chr4_2:10401246-10401265 None:intergenic 45.0%
GTACACCCACTTACAAGCTT+GGG + chr4_2:10401247-10401266 None:intergenic 45.0%
TGTACACCCACTTACAAGCT+TGG + chr4_2:10401248-10401267 None:intergenic 45.0%
ACCACCGATGTTGTTATGCA+GGG - chr4_2:10401658-10401677 Msa0588220:CDS 45.0%
ACAGCCCTGCATAACAACAT+CGG + chr4_2:10401665-10401684 None:intergenic 45.0%
TATGCATAGTGTATGGGGGT+TGG - chr4_2:10401762-10401781 Msa0588220:five_prime_UTR 45.0%
!! TGGTGGATTGTGAATGGTAC+TGG - chr4_2:10401800-10401819 Msa0588220:five_prime_UTR 45.0%
! TGGTACTGGAATTGCCTTGA+TGG - chr4_2:10401814-10401833 Msa0588220:five_prime_UTR 45.0%
CTTGAACGATGTCGTGGTAT+TGG + chr4_2:10401887-10401906 None:intergenic 45.0%
TGTCAGCCAAACGTCCAAAA+AGG + chr4_2:10401922-10401941 None:intergenic 45.0%
!! CACTTCTTGATGATGGATCG+GGG + chr4_2:10402236-10402255 None:intergenic 45.0%
TTGTCCTCAAGGTGAAGGTT+AGG + chr4_2:10402323-10402342 None:intergenic 45.0%
TAACCTTCACCTTGAGGACA+AGG - chr4_2:10402322-10402341 Msa0588220:five_prime_UTR 45.0%
!! CTGATAGTGGCGGTTATTGA+TGG - chr4_2:10402350-10402369 Msa0588220:five_prime_UTR 45.0%
! ATTGATGGGCCTCTAACTCA+TGG - chr4_2:10402365-10402384 Msa0588220:five_prime_UTR 45.0%
! TTGATGGGCCTCTAACTCAT+GGG - chr4_2:10402366-10402385 Msa0588220:five_prime_UTR 45.0%
GCTTGCTTGTTTACTGGAGA+AGG - chr4_2:10402396-10402415 Msa0588220:five_prime_UTR 45.0%
CGATGGGAATTGGAGAGAAA+TGG + chr4_2:10400134-10400153 None:intergenic 45.0%
! ATTCTGGAAGCGGTAACTGA+AGG + chr4_2:10400340-10400359 None:intergenic 45.0%
! TCAGATCTGGATTCTGGAAG+CGG + chr4_2:10400350-10400369 None:intergenic 45.0%
GCTCTTTCAGATCTGGATTC+TGG + chr4_2:10400356-10400375 None:intergenic 45.0%
TGTTCACGCTCTTTCAGATC+TGG + chr4_2:10400363-10400382 None:intergenic 45.0%
! GGTGTGATTGGGTGTTATAG+AGG - chr4_2:10400675-10400694 Msa0588220:CDS 45.0%
TGGGTAGGAGTCATGTTCTA+TGG - chr4_2:10400786-10400805 Msa0588220:CDS 45.0%
AGTCATGTTCTATGGTGCAG+TGG - chr4_2:10400794-10400813 Msa0588220:CDS 45.0%
TGTTCTATGGTGCAGTGGTA+TGG - chr4_2:10400799-10400818 Msa0588220:CDS 45.0%
GTTCTATGGTGCAGTGGTAT+GGG - chr4_2:10400800-10400819 Msa0588220:CDS 45.0%
GTTACTACCTCTACCGTTAC+TGG - chr4_2:10400957-10400976 Msa0588220:intron 45.0%
ACAAACGCACCAACCAGTAA+CGG + chr4_2:10400973-10400992 None:intergenic 45.0%
TACACCCACTTACAAGCTTG+GGG + chr4_2:10401246-10401265 None:intergenic 45.0%
GTACACCCACTTACAAGCTT+GGG + chr4_2:10401247-10401266 None:intergenic 45.0%
TGTACACCCACTTACAAGCT+TGG + chr4_2:10401248-10401267 None:intergenic 45.0%
ACCACCGATGTTGTTATGCA+GGG - chr4_2:10401658-10401677 Msa0588220:CDS 45.0%
ACAGCCCTGCATAACAACAT+CGG + chr4_2:10401665-10401684 None:intergenic 45.0%
TATGCATAGTGTATGGGGGT+TGG - chr4_2:10401762-10401781 Msa0588220:five_prime_UTR 45.0%
!! TGGTGGATTGTGAATGGTAC+TGG - chr4_2:10401800-10401819 Msa0588220:five_prime_UTR 45.0%
! TGGTACTGGAATTGCCTTGA+TGG - chr4_2:10401814-10401833 Msa0588220:five_prime_UTR 45.0%
CTTGAACGATGTCGTGGTAT+TGG + chr4_2:10401887-10401906 None:intergenic 45.0%
TGTCAGCCAAACGTCCAAAA+AGG + chr4_2:10401922-10401941 None:intergenic 45.0%
!! CACTTCTTGATGATGGATCG+GGG + chr4_2:10402236-10402255 None:intergenic 45.0%
TTGTCCTCAAGGTGAAGGTT+AGG + chr4_2:10402323-10402342 None:intergenic 45.0%
TAACCTTCACCTTGAGGACA+AGG - chr4_2:10402322-10402341 Msa0588220:five_prime_UTR 45.0%
!! CTGATAGTGGCGGTTATTGA+TGG - chr4_2:10402350-10402369 Msa0588220:five_prime_UTR 45.0%
! ATTGATGGGCCTCTAACTCA+TGG - chr4_2:10402365-10402384 Msa0588220:five_prime_UTR 45.0%
! TTGATGGGCCTCTAACTCAT+GGG - chr4_2:10402366-10402385 Msa0588220:five_prime_UTR 45.0%
GCTTGCTTGTTTACTGGAGA+AGG - chr4_2:10402396-10402415 Msa0588220:five_prime_UTR 45.0%
TTCTCTCCAATTCCCATCGC+TGG - chr4_2:10400135-10400154 Msa0588220:three_prime_UTR 50.0%
TCTCTTCCAGCGATGGGAAT+TGG + chr4_2:10400144-10400163 None:intergenic 50.0%
! GGGTTTTCTCTTCCAGCGAT+GGG + chr4_2:10400150-10400169 None:intergenic 50.0%
AACGCGAGTGCCAACAAGAA+CGG + chr4_2:10400898-10400917 None:intergenic 50.0%
TTGTTGGCACTCGCGTTTCT+CGG - chr4_2:10400901-10400920 Msa0588220:intron 50.0%
CTACCTCTACCGTTACTGGT+TGG - chr4_2:10400961-10400980 Msa0588220:intron 50.0%
TGTGTAGAGGAAGGGTTCTC+TGG - chr4_2:10401562-10401581 Msa0588220:CDS 50.0%
GTGTAGAGGAAGGGTTCTCT+GGG - chr4_2:10401563-10401582 Msa0588220:CDS 50.0%
TGTAGAGGAAGGGTTCTCTG+GGG - chr4_2:10401564-10401583 Msa0588220:CDS 50.0%
CACCACCGATGTTGTTATGC+AGG - chr4_2:10401657-10401676 Msa0588220:CDS 50.0%
GTTGGCCCTCTTCTATAGCA+TGG - chr4_2:10401780-10401799 Msa0588220:five_prime_UTR 50.0%
TGTGTATCAGACGCGAACTC+CGG - chr4_2:10401855-10401874 Msa0588220:five_prime_UTR 50.0%
!! GTCGTGGTATTGGTATCTCC+CGG + chr4_2:10401877-10401896 None:intergenic 50.0%
!! TAGCCTTGTCCTCAAGGTGA+AGG + chr4_2:10402328-10402347 None:intergenic 50.0%
!! TCAGTGTAGCCTTGTCCTCA+AGG + chr4_2:10402334-10402353 None:intergenic 50.0%
GGACAAGGCTACACTGATAG+TGG - chr4_2:10402337-10402356 Msa0588220:five_prime_UTR 50.0%
!! CAAGGCTACACTGATAGTGG+CGG - chr4_2:10402340-10402359 Msa0588220:five_prime_UTR 50.0%
!! CGTTTTGGTCCCTGCTTTGT+CGG + chr4_2:10400052-10400071 None:intergenic 50.0%
TTCTCTCCAATTCCCATCGC+TGG - chr4_2:10400135-10400154 Msa0588220:three_prime_UTR 50.0%
TCTCTTCCAGCGATGGGAAT+TGG + chr4_2:10400144-10400163 None:intergenic 50.0%
! GGGTTTTCTCTTCCAGCGAT+GGG + chr4_2:10400150-10400169 None:intergenic 50.0%
AACGCGAGTGCCAACAAGAA+CGG + chr4_2:10400898-10400917 None:intergenic 50.0%
TTGTTGGCACTCGCGTTTCT+CGG - chr4_2:10400901-10400920 Msa0588220:intron 50.0%
CTACCTCTACCGTTACTGGT+TGG - chr4_2:10400961-10400980 Msa0588220:intron 50.0%
TGTGTAGAGGAAGGGTTCTC+TGG - chr4_2:10401562-10401581 Msa0588220:CDS 50.0%
GTGTAGAGGAAGGGTTCTCT+GGG - chr4_2:10401563-10401582 Msa0588220:CDS 50.0%
TGTAGAGGAAGGGTTCTCTG+GGG - chr4_2:10401564-10401583 Msa0588220:CDS 50.0%
CACCACCGATGTTGTTATGC+AGG - chr4_2:10401657-10401676 Msa0588220:CDS 50.0%
GTTGGCCCTCTTCTATAGCA+TGG - chr4_2:10401780-10401799 Msa0588220:five_prime_UTR 50.0%
TGTGTATCAGACGCGAACTC+CGG - chr4_2:10401855-10401874 Msa0588220:five_prime_UTR 50.0%
!! GTCGTGGTATTGGTATCTCC+CGG + chr4_2:10401877-10401896 None:intergenic 50.0%
!! TAGCCTTGTCCTCAAGGTGA+AGG + chr4_2:10402328-10402347 None:intergenic 50.0%
!! TCAGTGTAGCCTTGTCCTCA+AGG + chr4_2:10402334-10402353 None:intergenic 50.0%
GGACAAGGCTACACTGATAG+TGG - chr4_2:10402337-10402356 Msa0588220:five_prime_UTR 50.0%
!! CAAGGCTACACTGATAGTGG+CGG - chr4_2:10402340-10402359 Msa0588220:five_prime_UTR 50.0%
! GGGGTTTTCTCTTCCAGCGA+TGG + chr4_2:10400151-10400170 None:intergenic 55.0%
! TGTAACGGGGTCGGTGTGAT+TGG - chr4_2:10400663-10400682 Msa0588220:CDS 55.0%
! GTAACGGGGTCGGTGTGATT+GGG - chr4_2:10400664-10400683 Msa0588220:CDS 55.0%
GCACCAACCAGTAACGGTAG+AGG + chr4_2:10400967-10400986 None:intergenic 55.0%
TTTCTGCTCAGCTCAGCTGC+AGG - chr4_2:10400999-10401018 Msa0588220:intron 55.0%
TTCTGCTCAGCTCAGCTGCA+GGG - chr4_2:10401000-10401019 Msa0588220:intron 55.0%
GTAGAGGAAGGGTTCTCTGG+GGG - chr4_2:10401565-10401584 Msa0588220:CDS 55.0%
GCCCTGCATAACAACATCGG+TGG + chr4_2:10401662-10401681 None:intergenic 55.0%
GGCCCTCTTCTATAGCATGG+TGG - chr4_2:10401783-10401802 Msa0588220:five_prime_UTR 55.0%
GTGTATCAGACGCGAACTCC+GGG - chr4_2:10401856-10401875 Msa0588220:five_prime_UTR 55.0%
! GGGGTTTTCTCTTCCAGCGA+TGG + chr4_2:10400151-10400170 None:intergenic 55.0%
! TGTAACGGGGTCGGTGTGAT+TGG - chr4_2:10400663-10400682 Msa0588220:CDS 55.0%
! GTAACGGGGTCGGTGTGATT+GGG - chr4_2:10400664-10400683 Msa0588220:CDS 55.0%
GCACCAACCAGTAACGGTAG+AGG + chr4_2:10400967-10400986 None:intergenic 55.0%
TTTCTGCTCAGCTCAGCTGC+AGG - chr4_2:10400999-10401018 Msa0588220:intron 55.0%
TTCTGCTCAGCTCAGCTGCA+GGG - chr4_2:10401000-10401019 Msa0588220:intron 55.0%
GTAGAGGAAGGGTTCTCTGG+GGG - chr4_2:10401565-10401584 Msa0588220:CDS 55.0%
GCCCTGCATAACAACATCGG+TGG + chr4_2:10401662-10401681 None:intergenic 55.0%
GGCCCTCTTCTATAGCATGG+TGG - chr4_2:10401783-10401802 Msa0588220:five_prime_UTR 55.0%
GTGTATCAGACGCGAACTCC+GGG - chr4_2:10401856-10401875 Msa0588220:five_prime_UTR 55.0%
GTGCAGTGGTATGGGACCCT+TGG - chr4_2:10400808-10400827 Msa0588220:intron 60.0%
GTGCAGTGGTATGGGACCCT+TGG - chr4_2:10400808-10400827 Msa0588220:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 10400050 10402449 10400050 ID=Msa0588220;Name=Msa0588220
chr4_2 mRNA 10400050 10402449 10400050 ID=Msa0588220-mRNA-1;Parent=Msa0588220;Name=Msa0588220-mRNA-1;_AED=0.14;_eAED=0.14;_QI=666|1|1|1|0.5|0.33|3|278|238
chr4_2 exon 10400050 10400820 10400050 ID=Msa0588220-mRNA-1:exon:2968;Parent=Msa0588220-mRNA-1
chr4_2 exon 10401478 10402203 10401478 ID=Msa0588220-mRNA-1:exon:2967;Parent=Msa0588220-mRNA-1
chr4_2 exon 10402286 10402449 10402286 ID=Msa0588220-mRNA-1:exon:2966;Parent=Msa0588220-mRNA-1
chr4_2 five_prime_UTR 10402286 10402449 10402286 ID=Msa0588220-mRNA-1:five_prime_utr;Parent=Msa0588220-mRNA-1
chr4_2 five_prime_UTR 10401702 10402203 10401702 ID=Msa0588220-mRNA-1:five_prime_utr;Parent=Msa0588220-mRNA-1
chr4_2 CDS 10401478 10401701 10401478 ID=Msa0588220-mRNA-1:cds;Parent=Msa0588220-mRNA-1
chr4_2 CDS 10400328 10400820 10400328 ID=Msa0588220-mRNA-1:cds;Parent=Msa0588220-mRNA-1
chr4_2 three_prime_UTR 10400050 10400327 10400050 ID=Msa0588220-mRNA-1:three_prime_utr;Parent=Msa0588220-mRNA-1
Gene Sequence

>Msa0588220

ATGTTCTATGGTGCAGTGGTATGGGACCCTTGGCTTATTGTTGCTCAAATTGTTTGCCTACAATGTATGTACTATATGACACTTGGATTATTCTTAACCGTTCTTGTTGGCACTCGCGTTTCTCGGCTGAGCCTTGTGTATTTCTTTGACTATGTTACCGTTACTACCTCTACCGTTACTGGTTGGTGCGTTTGTGCTTCATTTCTGCTCAGCTCAGCTGCAGGGGCTGTGTATATGCTTTATTTGATTGAAAGATCGAAGAAGTGCTTGGATTTTGCAGCCACTATCTATATCATTCATCTTTGCATATGCATAGTGTATGGGGGTTGGCCCTCTTCTATAGCATGGTGGATTGTGAATGGTACTGGAATTGCCTTGATGGCTTTGTTAGGTGAATATCTGTGTATCAGACGCGAACTCCGGGAGATACCAATACCACGACATCGTTCAAGTAAGAACTTACTCCTTTTTGGACGTTTGGCTGACAAGTTTGACATCTGCTATTTGAAGAATTGTTTATCATTTATATATATATTTTTCTTTTTTCTTTTTTATCATGACTTTTCTTATTTCAGAAACCTGCATATATGTTTAAGCTGTCAAACTCAATTTACATTAGGAATCGTAGGAAGTCATTCATATTCTATATGTCGTGCTTGCTGTTCTTTTTTTTCCTTATCCCCATGGATTTTTTTAATAGACAAGAAGATTGATTGA

Protein sequence

>Msa0588220

MFYGAVVWDPWLIVAQIVCLQCMYYMTLGLFLTVLVGTRVSRLSLVYFFDYVTVTTSTVTGWCVCASFLLSSAAGAVYMLYLIERSKKCLDFAATIYIIHLCICIVYGGWPSSIAWWIVNGTGIALMALLGEYLCIRRELREIPIPRHRSSKNLLLFGRLADKFDICYLKNCLSFIYIFFFFLFYHDFSYFRNLHICLSCQTQFTLGIVGSHSYSICRACCSFFSLSPWIFLIDKKID*