AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047250 MtrunA17_Chr2g0330411 99.647 283 1 0 1 283 1 283 0.0 575
Msa0047250 MtrunA17_Chr2g0308551 36.842 285 138 5 13 255 1 285 7.76e-49 164
Msa0047250 MtrunA17_Chr7g0221311 36.859 312 162 9 1 281 1 308 4.14e-47 162
Msa0047250 MtrunA17_Chr4g0073281 35.065 231 149 1 32 262 1 230 1.15e-40 142
Msa0047250 MtrunA17_Chr5g0431341 31.224 237 152 5 44 270 37 272 1.97e-35 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047250 AT1G55170.1 51.049 286 132 4 1 282 1 282 1.77e-86 260
Msa0047250 AT3G14750.1 38.696 230 131 3 37 257 63 291 1.73e-46 159
Msa0047250 AT1G67170.2 38.647 207 127 0 33 239 47 253 5.67e-42 148
Msa0047250 AT1G67170.1 38.647 207 127 0 33 239 47 253 5.67e-42 148
Msa0047250 AT2G30120.5 26.957 230 154 1 42 257 37 266 2.59e-21 91.7
Msa0047250 AT2G30120.4 26.754 228 153 1 42 255 37 264 6.04e-21 90.1
Msa0047250 AT2G30120.2 26.638 229 154 1 41 255 36 264 6.70e-21 90.5
Msa0047250 AT5G61920.3 28.351 194 139 0 28 221 37 230 1.56e-18 82.8
Msa0047250 AT5G61920.5 28.351 194 139 0 28 221 37 230 1.56e-18 82.8
Msa0047250 AT5G61920.2 28.351 194 139 0 28 221 37 230 1.56e-18 82.8
Msa0047250 AT5G61920.6 28.351 194 139 0 28 221 37 230 1.56e-18 82.8
Msa0047250 AT5G61920.1 28.351 194 139 0 28 221 37 230 1.56e-18 82.8
Msa0047250 AT5G61920.4 28.902 173 123 0 49 221 17 189 1.55e-16 76.6
Msa0047250 AT2G30120.3 27.972 143 103 0 39 181 34 176 1.13e-11 62.8
Msa0047250 AT2G30120.1 27.972 143 103 0 39 181 34 176 1.64e-11 62.0
Msa0047250 AT2G30120.6 27.972 143 103 0 39 181 34 176 1.64e-11 62.0

Find 165 sgRNAs with CRISPR-Local

Find 520 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCTTCAATTTCTAATT+AGG 0.149861 1_1:-79954588 Msa0047250:intron
CTACACTTTGTAATAAATTA+TGG 0.161788 1_1:+79948176 None:intergenic
GCAGAGAAAGGTCCTCTTTA+TGG 0.176094 1_1:-79952468 Msa0047250:CDS
TTGCCTTATGGAACAAATTT+TGG 0.192469 1_1:-79952637 Msa0047250:CDS
CGAAATGTTTCAACGTGTTT+TGG 0.209278 1_1:-79948311 Msa0047250:three_prime_UTR
CGCAAAATCTCGCAGCATTA+TGG 0.232507 1_1:+79948915 None:intergenic
AAACCGGGTGAAATGTATTA+TGG 0.235292 1_1:-79948857 Msa0047250:three_prime_UTR
ATTCATGCAGGTTTGCCTTA+TGG 0.235597 1_1:-79952649 Msa0047250:intron
AAACTATATGCATGATTAAA+TGG 0.243539 1_1:+79948097 None:intergenic
ATGGGGTGGGTACTGCTTCT+AGG 0.246552 1_1:-79952449 Msa0047250:CDS
CACTTACGAAAGATGTTTCT+AGG 0.253529 1_1:-79953711 Msa0047250:CDS
AGTATCAAACAAGAACTTTC+TGG 0.261139 1_1:-79953745 Msa0047250:CDS
AAAATTAAGCCACTAGGATT+TGG 0.264537 1_1:-79948022 Msa0047250:three_prime_UTR
AGTTTCTTGCACGCTCTATT+TGG 0.269956 1_1:-79948345 Msa0047250:three_prime_UTR
CAAAACACGTTGAAACATTT+CGG 0.287707 1_1:+79948312 None:intergenic
CTCTATGAAGTTCGGATTAT+AGG 0.291892 1_1:+79948256 None:intergenic
AGTTATACGGCGGCGTCGTT+TGG 0.300940 1_1:+79954712 None:intergenic
TTGGAAATGAAAGCTTTAAA+AGG 0.310780 1_1:-79948732 Msa0047250:three_prime_UTR
TAAAAGCTCTTTGAGTTATA+CGG 0.314442 1_1:+79954699 None:intergenic
TACACTTTGTAATAAATTAT+GGG 0.316188 1_1:+79948177 None:intergenic
CACGAAGTTTCTCAACTTCT+CGG 0.317894 1_1:+79953414 None:intergenic
ACCTAGCGCGCATCAGTTCT+TGG 0.323755 1_1:+79953632 None:intergenic
GAGATAAAAGACCATTAAAA+TGG 0.326020 1_1:+79952301 None:intergenic
ACCTCATCCAGCATTGTTAG+AGG 0.338446 1_1:-79954040 Msa0047250:CDS
CCTCCATATGCAGATGGATA+TGG 0.340583 1_1:-79952592 Msa0047250:CDS
ACACTACAAAACTAATTGTA+TGG 0.343376 1_1:-79947955 Msa0047250:three_prime_UTR
TCTTCCTACTCGCGTCTAAA+TGG 0.346507 1_1:+79948131 None:intergenic
CAGAGAAAGGTCCTCTTTAT+GGG 0.349670 1_1:-79952467 Msa0047250:CDS
ATTAGTTGAAAATGCAAAAC+CGG 0.350376 1_1:-79948873 Msa0047250:three_prime_UTR
TCAATGAGATCTGAGATTGA+TGG 0.370744 1_1:-79953661 Msa0047250:CDS
GGAGGCTGGTGGCGGATAAC+AGG 0.382841 1_1:-79953987 Msa0047250:CDS
CAATCTAAAATTTGGAAATC+AGG 0.386622 1_1:+79948457 None:intergenic
GCATTTGACATTTGAGTAGA+TGG 0.387169 1_1:-79948389 Msa0047250:three_prime_UTR
CTTCCGATGGATACCCTCTT+CGG 0.387777 1_1:+79954109 None:intergenic
CCCGCACGCTCTATGAAGTT+CGG 0.395759 1_1:+79948248 None:intergenic
GAAGGCAAACATGGAGTTCA+TGG 0.395776 1_1:-79953477 Msa0047250:CDS
AGAGCGTGCAAGAAACTCAT+AGG 0.399746 1_1:+79948351 None:intergenic
GTTATACGGCGGCGTCGTTT+GGG 0.400300 1_1:+79954713 None:intergenic
TTCAATTGGGTTGTCCTCCT+TGG 0.404053 1_1:-79948582 Msa0047250:three_prime_UTR
CTACCAAAATTTGTTCCATA+AGG 0.410355 1_1:+79952634 None:intergenic
AACCGGGTGAAATGTATTAT+GGG 0.424403 1_1:-79948856 Msa0047250:three_prime_UTR
TGAAGTTGGAGTCTGATCTT+AGG 0.426762 1_1:-79953828 Msa0047250:CDS
GGTGGTGGCCCGCGAGCATA+AGG 0.435456 1_1:+79954084 None:intergenic
TAGCATGGATGGAAGACATT+GGG 0.438242 1_1:-79953381 Msa0047250:CDS
TTTCTCAACTTCTCGGGCCA+TGG 0.443621 1_1:+79953421 None:intergenic
TTCCGATGGATACCCTCTTC+GGG 0.447941 1_1:+79954110 None:intergenic
AAACATCTTTCGTAAGTGTC+TGG 0.450505 1_1:+79953716 None:intergenic
CCGATGGTTTAATTGTGCTT+TGG 0.457270 1_1:-79948490 Msa0047250:three_prime_UTR
GTTTAGGCTGCTGCAGAGAA+AGG 0.464656 1_1:-79952480 Msa0047250:intron
GATGGAAGACATTGGGGAGC+TGG 0.465511 1_1:-79953374 Msa0047250:intron
GTATCAAACAAGAACTTTCT+GGG 0.473347 1_1:-79953744 Msa0047250:CDS
TCAATCTCAGATCTCATTGA+AGG 0.475047 1_1:+79953664 None:intergenic
CTTACTATATGCTTTCAGCT+TGG 0.475286 1_1:-79948556 Msa0047250:three_prime_UTR
AGAGCGTGCGGGAAACTCAT+AGG 0.475766 1_1:-79948237 Msa0047250:three_prime_UTR
AATGAAAGCTTTAAAAGGTA+TGG 0.476327 1_1:-79948727 Msa0047250:three_prime_UTR
GCTGAGGGCAAGTAGGGCAC+AGG 0.477124 1_1:-79948834 Msa0047250:three_prime_UTR
GATAGTATGCATGAGGTCCT+AGG 0.482561 1_1:-79948000 Msa0047250:three_prime_UTR
ACGAAGTTTCTCAACTTCTC+GGG 0.483936 1_1:+79953415 None:intergenic
TACTTCGCTAACACAGCTAA+AGG 0.487483 1_1:+79952348 None:intergenic
AGCTCTTCCTCTAACAATGC+TGG 0.487736 1_1:+79954033 None:intergenic
AATGCACAAGCCCAACTAAA+GGG 0.494054 1_1:+79948407 None:intergenic
ACACCATATCCATCTGCATA+TGG 0.495250 1_1:+79952589 None:intergenic
AGCTTTCATTTCCAATCTCA+CGG 0.498392 1_1:+79948740 None:intergenic
AAATGCACAAGCCCAACTAA+AGG 0.500360 1_1:+79948406 None:intergenic
GCGAGACCTTGCAGCTGCGA+AGG 0.508426 1_1:-79953935 Msa0047250:CDS
TATGGTGGATTATGAAAAGA+AGG 0.509898 1_1:-79953495 Msa0047250:CDS
TACCCTCTTCGGGAACTCAT+TGG 0.513298 1_1:+79954120 None:intergenic
AAGAAGAGGGTCGCGTACGA+TGG 0.513958 1_1:+79954646 None:intergenic
ACTTCGCTAACACAGCTAAA+GGG 0.514081 1_1:+79952349 None:intergenic
TCCTCTAACAATGCTGGATG+AGG 0.514770 1_1:+79954039 None:intergenic
TATAGGGTATGTATGCCGTT+CGG 0.515712 1_1:-79948281 Msa0047250:three_prime_UTR
CTCGCAGCATTATGGTGTGT+GGG 0.516947 1_1:+79948923 None:intergenic
TGCTGTCGTGGCATTGGTGG+TGG 0.516987 1_1:+79954069 None:intergenic
TATCCATCTGCATATGGAGG+TGG 0.517988 1_1:+79952595 None:intergenic
CAAGCTGAAAGCATATAGTA+AGG 0.520368 1_1:+79948557 None:intergenic
GCTGAGCTTGCTAGCATGGA+TGG 0.521001 1_1:-79953392 Msa0047250:CDS
TCGTGCTGAGCTTGCTAGCA+TGG 0.521988 1_1:-79953396 Msa0047250:CDS
CTGAACATGAGATGCATTCG+AGG 0.524074 1_1:-79953870 Msa0047250:CDS
CATCGTATGAATTTAGCGAT+TGG 0.524610 1_1:-79953904 Msa0047250:CDS
GTGTTATCTTGATCCATCAC+AGG 0.526559 1_1:+79948799 None:intergenic
CACTACAAAACTAATTGTAT+GGG 0.527302 1_1:-79947954 Msa0047250:three_prime_UTR
GCAGTACCCACCCCATAAAG+AGG 0.528840 1_1:+79952456 None:intergenic
AGACCTTGCAGCTGCGAAGG+AGG 0.529458 1_1:-79953932 Msa0047250:CDS
CATGGAACAGAGGCAGTCAA+TGG 0.533149 1_1:-79953459 Msa0047250:CDS
GAAAGCTTTAAAAGGTATGG+TGG 0.533811 1_1:-79948724 Msa0047250:three_prime_UTR
TATGGTTGCAGATGGAGAGC+TGG 0.534739 1_1:-79948981 Msa0047250:intron
TGTATAACTTCATTCTTCAA+CGG 0.535567 1_1:+79953796 None:intergenic
GTGAAATGTATTATGGGCTG+AGG 0.545481 1_1:-79948850 Msa0047250:three_prime_UTR
CGTGCGGGAAACTCATAGGT+TGG 0.548592 1_1:-79948233 Msa0047250:three_prime_UTR
GGAATATGCTGTCGTGGCAT+TGG 0.548596 1_1:+79954063 None:intergenic
TCTAACAATGCTGGATGAGG+TGG 0.550555 1_1:+79954042 None:intergenic
CCTCTTCGGGAACTCATTGG+TGG 0.551456 1_1:+79954123 None:intergenic
TTATGGGCTGAGGGCAAGTA+GGG 0.551600 1_1:-79948840 Msa0047250:three_prime_UTR
TGATGAAAGAGTTTATCAGC+AGG 0.553082 1_1:-79948532 Msa0047250:three_prime_UTR
TAGGAAATGTACCTACTGAT+GGG 0.553548 1_1:-79948156 Msa0047250:three_prime_UTR
AACACAGCTAAAGGGATGGC+AGG 0.555700 1_1:+79952357 None:intergenic
TATCAAAACACAACAAAGGC+AGG 0.556096 1_1:+79948769 None:intergenic
CTAGCATGGATGGAAGACAT+TGG 0.560779 1_1:-79953382 Msa0047250:CDS
AGCCCATAATACATTTCACC+CGG 0.563030 1_1:+79948854 None:intergenic
TCGGAAGGTCCTTATGCTCG+CGG 0.566608 1_1:-79954093 Msa0047250:CDS
TCAACTAATGAAGAACATCT+CGG 0.568018 1_1:+79948887 None:intergenic
ACCAAGAACTGATGCGCGCT+AGG 0.570107 1_1:-79953633 Msa0047250:intron
CTGAGGGCAAGTAGGGCACA+GGG 0.571813 1_1:-79948833 Msa0047250:three_prime_UTR
GGAGGTAACGACTTCAACCT+AGG 0.571856 1_1:+79947983 None:intergenic
TTATGAAAAGAAGGCAAACA+TGG 0.573229 1_1:-79953486 Msa0047250:CDS
GCTCCTCCTTCGCAGCTGCA+AGG 0.574836 1_1:+79953929 None:intergenic
ATTATGGGCTGAGGGCAAGT+AGG 0.575314 1_1:-79948841 Msa0047250:three_prime_UTR
GTAGGAAATGTACCTACTGA+TGG 0.577220 1_1:-79948157 Msa0047250:three_prime_UTR
ATTCAACGACGGTTTGAGCG+AGG 0.579107 1_1:+79952411 None:intergenic
AAAGGTCCTCTTTATGGGGT+GGG 0.581180 1_1:-79952462 Msa0047250:CDS
TGAATCTAAGTGATTGATGT+TGG 0.581375 1_1:-79952393 Msa0047250:three_prime_UTR
TCTCGCAGCATTATGGTGTG+TGG 0.585323 1_1:+79948922 None:intergenic
CGCTAACACAGCTAAAGGGA+TGG 0.585429 1_1:+79952353 None:intergenic
GAAAGGTCCTCTTTATGGGG+TGG 0.586390 1_1:-79952463 Msa0047250:CDS
ATATGCTGTCGTGGCATTGG+TGG 0.591214 1_1:+79954066 None:intergenic
ACAGGAGGTTGATTGATGAT+CGG 0.594043 1_1:-79953969 Msa0047250:CDS
TTCCCACCTCCATATGCAGA+TGG 0.594536 1_1:-79952598 Msa0047250:CDS
ATCCATCTGCATATGGAGGT+GGG 0.596363 1_1:+79952596 None:intergenic
CGGAAGGTCCTTATGCTCGC+GGG 0.597736 1_1:-79954092 Msa0047250:CDS
TCCGAACTTCATAGAGCGTG+CGG 0.599188 1_1:-79948249 Msa0047250:three_prime_UTR
CAAACAAGAACTTTCTGGGA+AGG 0.599275 1_1:-79953740 Msa0047250:CDS
TAGCTGTGTTAGCGAAGTAG+CGG 0.599283 1_1:-79952344 Msa0047250:three_prime_UTR
TTGATGTTGGTGATGAAGAA+AGG 0.600863 1_1:-79952380 Msa0047250:three_prime_UTR
TGAAATGAGGAGGCTGGTGG+CGG 0.604523 1_1:-79953995 Msa0047250:CDS
GCATGCTGAAATGAGGAGGC+TGG 0.605896 1_1:-79954001 Msa0047250:CDS
GGCTGGTGGCGGATAACAGG+AGG 0.608308 1_1:-79953984 Msa0047250:CDS
GAGCGTGCAAGAAACTCATA+GGG 0.610837 1_1:+79948352 None:intergenic
CCAAAGCACAATTAAACCAT+CGG 0.612942 1_1:+79948490 None:intergenic
TTAGTTGAAAATGCAAAACC+GGG 0.613401 1_1:-79948872 Msa0047250:three_prime_UTR
CATAATTTATTACAAAGTGT+AGG 0.614382 1_1:-79948175 Msa0047250:three_prime_UTR
CACCAATGAGTTCCCGAAGA+GGG 0.614590 1_1:-79954122 Msa0047250:CDS
CGTGCAAGAAACTCATAGGG+TGG 0.615760 1_1:+79948355 None:intergenic
CGAGCATAAGGACCTTCCGA+TGG 0.617038 1_1:+79954096 None:intergenic
GGGGCCATTTAGACGCGAGT+AGG 0.619983 1_1:-79948135 Msa0047250:three_prime_UTR
CGAAGAGGGTATCCATCGGA+AGG 0.623087 1_1:-79954108 Msa0047250:CDS
CCGAACTTCATAGAGCGTGC+GGG 0.626111 1_1:-79948248 Msa0047250:three_prime_UTR
AAGTGCAGCATGCTGAAATG+AGG 0.630681 1_1:-79954008 Msa0047250:CDS
GTGCAAGAAACTCATAGGGT+GGG 0.634316 1_1:+79948356 None:intergenic
AGGAAATGTACCTACTGATG+GGG 0.638320 1_1:-79948155 Msa0047250:three_prime_UTR
TGAAATGTATTATGGGCTGA+GGG 0.638805 1_1:-79948849 Msa0047250:three_prime_UTR
TTCCCGAAGAGGGTATCCAT+CGG 0.640372 1_1:-79954112 Msa0047250:CDS
AAAATATCAAAACACAACAA+AGG 0.643607 1_1:+79948765 None:intergenic
TGTTATCTTGATCCATCACA+GGG 0.644177 1_1:+79948800 None:intergenic
TCGCAGCATTATGGTGTGTG+GGG 0.649104 1_1:+79948924 None:intergenic
GGATTTGGATAGTATGCATG+AGG 0.650640 1_1:-79948007 Msa0047250:three_prime_UTR
AGCATGGATGGAAGACATTG+GGG 0.653311 1_1:-79953380 Msa0047250:CDS
TGAGGTGGAATATGCTGTCG+TGG 0.657020 1_1:+79954057 None:intergenic
CCATATCCATCTGCATATGG+AGG 0.657742 1_1:+79952592 None:intergenic
GGAAATGTACCTACTGATGG+GGG 0.669640 1_1:-79948154 Msa0047250:three_prime_UTR
GATGAAAGAGTTTATCAGCA+GGG 0.669777 1_1:-79948531 Msa0047250:three_prime_UTR
GCATACTATCCAAATCCTAG+TGG 0.669807 1_1:+79948013 None:intergenic
TGCTGAAATGAGGAGGCTGG+TGG 0.673111 1_1:-79953998 Msa0047250:CDS
TGAACATGAGATGCATTCGA+GGG 0.676175 1_1:-79953869 Msa0047250:CDS
AGAGAAAGGTCCTCTTTATG+GGG 0.677550 1_1:-79952466 Msa0047250:CDS
TGCAGCATGCTGAAATGAGG+AGG 0.680683 1_1:-79954005 Msa0047250:CDS
CAATCACTTAGATTCAACGA+CGG 0.682596 1_1:+79952400 None:intergenic
TTGGTGGCTCTCTATGAACA+CGG 0.684269 1_1:+79954139 None:intergenic
ACATGGAGTTCATGGAACAG+AGG 0.685058 1_1:-79953469 Msa0047250:CDS
CCACCAATGAGTTCCCGAAG+AGG 0.693852 1_1:-79954123 Msa0047250:CDS
AGATGGATATGGTGTTCACA+TGG 0.705947 1_1:-79952581 Msa0047250:intron
TTCGGATTATAGGATCCGAA+CGG 0.708886 1_1:+79948266 None:intergenic
AAGCTCTTTGAGTTATACGG+CGG 0.712129 1_1:+79954702 None:intergenic
AAGCATATAGTAAGGCACCA+AGG 0.723002 1_1:+79948565 None:intergenic
GAAAGAGTTTATCAGCAGGG+CGG 0.743630 1_1:-79948528 Msa0047250:three_prime_UTR
CATATAGTAAGGCACCAAGG+AGG 0.769093 1_1:+79948568 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATACTGTTAATTTTAAAT+TGG - chr1_1:79950402-79950421 Msa0047250:intron 10.0%
!! TTAAAAGCTTAAAAAAAATT+TGG - chr1_1:79951662-79951681 Msa0047250:intron 10.0%
!!! ATTTTTGTTTTATAGAACTA+TGG - chr1_1:79949152-79949171 Msa0047250:intron 15.0%
!! TTAATAAAAGACATGAAAAA+CGG - chr1_1:79949469-79949488 Msa0047250:intron 15.0%
!! AAAACAAGAAATATTATCAA+TGG + chr1_1:79950537-79950556 None:intergenic 15.0%
!!! TGTTTAGTTATTATTTGTTT+TGG - chr1_1:79950578-79950597 Msa0047250:intron 15.0%
!!! GTTTAGTTATTATTTGTTTT+GGG - chr1_1:79950579-79950598 Msa0047250:intron 15.0%
!!! TTTAGTTATTATTTGTTTTG+GGG - chr1_1:79950580-79950599 Msa0047250:intron 15.0%
!!! AAACTTTAAAGCTTAATTTA+TGG - chr1_1:79950908-79950927 Msa0047250:intron 15.0%
!! ATTAAAAGCTTAAAATTGTT+TGG - chr1_1:79951606-79951625 Msa0047250:intron 15.0%
!! TGTATAACAATAGTATTTAA+GGG - chr1_1:79951845-79951864 Msa0047250:intron 15.0%
!! ATAAAAAATGAGAAACTTTA+TGG + chr1_1:79951974-79951993 None:intergenic 15.0%
!! AATCTATTATATTTATGGAT+GGG - chr1_1:79952223-79952242 Msa0047250:intron 15.0%
!!! AATTAGTTTCGTATTAATAT+GGG + chr1_1:79952516-79952535 None:intergenic 15.0%
!!! TAATTAGTTTCGTATTAATA+TGG + chr1_1:79952517-79952536 None:intergenic 15.0%
!! TATAATAATAACAACAGATA+TGG + chr1_1:79952843-79952862 None:intergenic 15.0%
!!! ATATCTGTTGTTATTATTAT+AGG - chr1_1:79952842-79952861 Msa0047250:intron 15.0%
!! ATAATAATAGATACAAAGTT+AGG + chr1_1:79953667-79953686 None:intergenic 15.0%
!! TAACTTTGTATCTATTATTA+TGG - chr1_1:79953666-79953685 Msa0047250:CDS 15.0%
!! GTTGGAAAAAAAAAAAAAAA+AGG - chr1_1:79954450-79954469 Msa0047250:intron 15.0%
!! TACACTTTGTAATAAATTAT+GGG + chr1_1:79954491-79954510 None:intergenic 15.0%
!! ATTCTCTTCAATTTCTAATT+AGG - chr1_1:79948077-79948096 Msa0047250:three_prime_UTR 20.0%
!!! TTTCACGTGTTTATATTTTT+TGG - chr1_1:79948147-79948166 Msa0047250:three_prime_UTR 20.0%
!!! TTCACGTGTTTATATTTTTT+GGG - chr1_1:79948148-79948167 Msa0047250:three_prime_UTR 20.0%
!! TTTGTACTAATGGAAATAAA+AGG + chr1_1:79948300-79948319 None:intergenic 20.0%
!!! TGTTGATAAAAATATGAAGT+TGG - chr1_1:79948823-79948842 Msa0047250:three_prime_UTR 20.0%
!! AATGAAATGACATGAATAAT+AGG - chr1_1:79949438-79949457 Msa0047250:intron 20.0%
!!! TTTTGTGTATTATGTGATTA+CGG + chr1_1:79949568-79949587 None:intergenic 20.0%
!!! TTTTTAGAATTTAAGGCAAT+TGG - chr1_1:79949596-79949615 Msa0047250:intron 20.0%
!! ATCCTATTATTTGTGTTAAT+TGG - chr1_1:79949861-79949880 Msa0047250:intron 20.0%
!! ATCCAATTAACACAAATAAT+AGG + chr1_1:79949866-79949885 None:intergenic 20.0%
!! AGTATATTAAGATTGCAAAT+AGG + chr1_1:79950389-79950408 None:intergenic 20.0%
!!! AATTTTAAATTGGCATATGT+AGG - chr1_1:79950412-79950431 Msa0047250:intron 20.0%
!!! AAGTTTAAAACTTATTGTGT+TGG - chr1_1:79950489-79950508 Msa0047250:intron 20.0%
!!! TTTTAGAGTATGTTTCTTTT+AGG - chr1_1:79950946-79950965 Msa0047250:intron 20.0%
!! TTATGTTACAAATGGTTATT+TGG - chr1_1:79951134-79951153 Msa0047250:intron 20.0%
!! TATGTTACAAATGGTTATTT+GGG - chr1_1:79951135-79951154 Msa0047250:intron 20.0%
!!! TGCAAAAGATATTTAAGATT+GGG - chr1_1:79951293-79951312 Msa0047250:intron 20.0%
!! AAAAAAATTTGGTTAGACTT+CGG - chr1_1:79951673-79951692 Msa0047250:intron 20.0%
!! TGCAAACTATTTATTTGAAA+TGG - chr1_1:79951765-79951784 Msa0047250:intron 20.0%
!! TCTAATCTTATCTTTAGATT+GGG + chr1_1:79951802-79951821 None:intergenic 20.0%
!! ATCTAATCTTATCTTTAGAT+TGG + chr1_1:79951803-79951822 None:intergenic 20.0%
!! AATACTATTGTTATACAGAT+CGG + chr1_1:79951842-79951861 None:intergenic 20.0%
!! CTGTATAACAATAGTATTTA+AGG - chr1_1:79951844-79951863 Msa0047250:intron 20.0%
!! GTATAACAATAGTATTTAAG+GGG - chr1_1:79951846-79951865 Msa0047250:intron 20.0%
!! TATAACAATAGTATTTAAGG+GGG - chr1_1:79951847-79951866 Msa0047250:intron 20.0%
!!! AAGTTTCTCATTTTTTATAG+TGG - chr1_1:79951976-79951995 Msa0047250:intron 20.0%
!! ACGACAATCTATTATATTTA+TGG - chr1_1:79952218-79952237 Msa0047250:intron 20.0%
!! CAATCTATTATATTTATGGA+TGG - chr1_1:79952222-79952241 Msa0047250:intron 20.0%
!! ATCTATTATATTTATGGATG+GGG - chr1_1:79952224-79952243 Msa0047250:intron 20.0%
!! TAATTCTTGAGATTCATAAT+AGG + chr1_1:79952751-79952770 None:intergenic 20.0%
!! AAAATATCAAAACACAACAA+AGG + chr1_1:79953903-79953922 None:intergenic 20.0%
!!! ATGAACATAAAAAGCTTTTA+AGG - chr1_1:79953976-79953995 Msa0047250:CDS 20.0%
!! AAAAGTTAAAAAAAAAGGAG+GGG + chr1_1:79954238-79954257 None:intergenic 20.0%
!! GAAAAGTTAAAAAAAAAGGA+GGG + chr1_1:79954239-79954258 None:intergenic 20.0%
!! AAGGGAAAAGTTAAAAAAAA+AGG + chr1_1:79954243-79954262 None:intergenic 20.0%
!! GGAAAAAAAAAAAAAAAAGG+CGG - chr1_1:79954453-79954472 Msa0047250:intron 20.0%
!! CTACACTTTGTAATAAATTA+TGG + chr1_1:79954492-79954511 None:intergenic 20.0%
!! CATAATTTATTACAAAGTGT+AGG - chr1_1:79954490-79954509 Msa0047250:intron 20.0%
!! AAACTATATGCATGATTAAA+TGG + chr1_1:79954571-79954590 None:intergenic 20.0%
!! TAAAAGCTCTTTGAGTTATA+CGG + chr1_1:79947969-79947988 None:intergenic 25.0%
!! TTTTGTAAGCTAACAATACA+TGG + chr1_1:79948183-79948202 None:intergenic 25.0%
! ATCAAAAACATCAAATCCAT+GGG + chr1_1:79948207-79948226 None:intergenic 25.0%
! AATCAAAAACATCAAATCCA+TGG + chr1_1:79948208-79948227 None:intergenic 25.0%
!!! ATTAGAAGTGTTTGTACTAA+TGG + chr1_1:79948310-79948329 None:intergenic 25.0%
! ATTAGTACAAACACTTCTAA+TGG - chr1_1:79948309-79948328 Msa0047250:three_prime_UTR 25.0%
! CCATTTCAATTTACCTAAAA+GGG + chr1_1:79948496-79948515 None:intergenic 25.0%
!!! CCTTTTAGGTAAATTGAAAT+GGG - chr1_1:79948494-79948513 Msa0047250:three_prime_UTR 25.0%
! TGTATAACTTCATTCTTCAA+CGG + chr1_1:79948872-79948891 None:intergenic 25.0%
!!! TTTGTTTTATAGAACTATGG+TGG - chr1_1:79949155-79949174 Msa0047250:intron 25.0%
! ATCTTTCAGACAATTATGAA+GGG + chr1_1:79949527-79949546 None:intergenic 25.0%
! AATCACATAATACACAAAAG+TGG - chr1_1:79949569-79949588 Msa0047250:intron 25.0%
!!! TGGCAGTTTTTTAGAATTTA+AGG - chr1_1:79949589-79949608 Msa0047250:intron 25.0%
!!! AGAATTTTAGTATTCATCGA+GGG - chr1_1:79949715-79949734 Msa0047250:intron 25.0%
! ATGAAGCAAACGTTAAAAAA+GGG + chr1_1:79949998-79950017 None:intergenic 25.0%
! AATGAAGCAAACGTTAAAAA+AGG + chr1_1:79949999-79950018 None:intergenic 25.0%
!! GGTCTAAAATTATTGTGTTA+AGG + chr1_1:79950120-79950139 None:intergenic 25.0%
! GAGATAAAAGACCATTAAAA+TGG + chr1_1:79950367-79950386 None:intergenic 25.0%
!!! ATTTGTTTTGGGGTAAAATA+TGG - chr1_1:79950590-79950609 Msa0047250:intron 25.0%
!! CAACACAGATTTTTCATTAT+TGG - chr1_1:79950731-79950750 Msa0047250:intron 25.0%
! ATGTTACAAATGGTTATTTG+GGG - chr1_1:79951136-79951155 Msa0047250:intron 25.0%
!! CAATCTTAAATATCTTTTGC+AGG + chr1_1:79951294-79951313 None:intergenic 25.0%
!! CTGCAAAAGATATTTAAGAT+TGG - chr1_1:79951292-79951311 Msa0047250:intron 25.0%
! AAAAACTTTGCACAGAAATA+CGG + chr1_1:79951340-79951359 None:intergenic 25.0%
!! GCATTCTATTATGTTGATTA+GGG - chr1_1:79951508-79951527 Msa0047250:intron 25.0%
! TGATGAAATATCATTGATCA+AGG - chr1_1:79952005-79952024 Msa0047250:intron 25.0%
! AAAGATGACTAATTCTAACT+GGG + chr1_1:79952561-79952580 None:intergenic 25.0%
! TAAAGATGACTAATTCTAAC+TGG + chr1_1:79952562-79952581 None:intergenic 25.0%
! GATTCACTTATTGAAGAATT+TGG - chr1_1:79953053-79953072 Msa0047250:intron 25.0%
! GATTCACTTATTGAAGAATT+TGG - chr1_1:79953053-79953072 Msa0047250:intron 25.0%
!! TAAATCTTGTGAATCTTTTG+AGG - chr1_1:79953402-79953421 Msa0047250:CDS 25.0%
! CAAAGTTAGGTAGAAATAAA+TGG + chr1_1:79953654-79953673 None:intergenic 25.0%
! ATTAGTTGAAAATGCAAAAC+CGG - chr1_1:79953792-79953811 Msa0047250:CDS 25.0%
!!! TTGGAAATGAAAGCTTTAAA+AGG - chr1_1:79953933-79953952 Msa0047250:CDS 25.0%
!!! AATGAAAGCTTTAAAAGGTA+TGG - chr1_1:79953938-79953957 Msa0047250:CDS 25.0%
!!! AACATAAAAAGCTTTTAAGG+AGG - chr1_1:79953979-79953998 Msa0047250:CDS 25.0%
!!! ACATAAAAAGCTTTTAAGGA+GGG - chr1_1:79953980-79953999 Msa0047250:CDS 25.0%
!!! ATAGTCATGTTTTGTTCAAT+TGG - chr1_1:79954069-79954088 Msa0047250:CDS 25.0%
!!! TAGTCATGTTTTGTTCAATT+GGG - chr1_1:79954070-79954089 Msa0047250:CDS 25.0%
!! CAATCTAAAATTTGGAAATC+AGG + chr1_1:79954211-79954230 None:intergenic 25.0%
! AAAGTTAAAAAAAAAGGAGG+GGG + chr1_1:79954237-79954256 None:intergenic 25.0%
! GGAAAAGTTAAAAAAAAAGG+AGG + chr1_1:79954240-79954259 None:intergenic 25.0%
!!! TTTTAACTTTTCCCTTTAGT+TGG - chr1_1:79954247-79954266 Msa0047250:intron 25.0%
!!! TTTAACTTTTCCCTTTAGTT+GGG - chr1_1:79954248-79954267 Msa0047250:intron 25.0%
!!! ATTAGTTTTGTAGTGTACAA+TGG + chr1_1:79954706-79954725 None:intergenic 25.0%
! ACACTACAAAACTAATTGTA+TGG - chr1_1:79954710-79954729 Msa0047250:five_prime_UTR 25.0%
! CACTACAAAACTAATTGTAT+GGG - chr1_1:79954711-79954730 Msa0047250:five_prime_UTR 25.0%
!! GAGAATTTTGATGAAGAAGA+GGG + chr1_1:79948035-79948054 None:intergenic 30.0%
!! TGAGAATTTTGATGAAGAAG+AGG + chr1_1:79948036-79948055 None:intergenic 30.0%
!! CCCTTTTAGGTAAATTGAAA+TGG - chr1_1:79948493-79948512 Msa0047250:three_prime_UTR 30.0%
CCCATTTCAATTTACCTAAA+AGG + chr1_1:79948497-79948516 None:intergenic 30.0%
AGTATCAAACAAGAACTTTC+TGG - chr1_1:79948920-79948939 Msa0047250:three_prime_UTR 30.0%
GTATCAAACAAGAACTTTCT+GGG - chr1_1:79948921-79948940 Msa0047250:three_prime_UTR 30.0%
! TCTATCTTTAAGCATCCTTT+TGG - chr1_1:79949088-79949107 Msa0047250:intron 30.0%
!! TATGGTGGATTATGAAAAGA+AGG - chr1_1:79949170-79949189 Msa0047250:intron 30.0%
TTATGAAAAGAAGGCAAACA+TGG - chr1_1:79949179-79949198 Msa0047250:intron 30.0%
AAGGATGATAAATTCTGCAA+AGG + chr1_1:79949339-79949358 None:intergenic 30.0%
GCTATGCTAGTAAATACATA+TGG + chr1_1:79949374-79949393 None:intergenic 30.0%
CATCTTTCAGACAATTATGA+AGG + chr1_1:79949528-79949547 None:intergenic 30.0%
CTTCATAATTGTCTGAAAGA+TGG - chr1_1:79949526-79949545 Msa0047250:intron 30.0%
ATAATTGTCTGAAAGATGGT+TGG - chr1_1:79949530-79949549 Msa0047250:intron 30.0%
TAATTGTCTGAAAGATGGTT+GGG - chr1_1:79949531-79949550 Msa0047250:intron 30.0%
GAGTTAAGGTGATTAAGAAT+AGG + chr1_1:79949651-79949670 None:intergenic 30.0%
!! CTATGTGATGATTTTGAGAA+CGG - chr1_1:79949691-79949710 Msa0047250:intron 30.0%
!! CAGAATTTTAGTATTCATCG+AGG - chr1_1:79949714-79949733 Msa0047250:intron 30.0%
! ATATCTTTCGATCTTTTGAC+TGG - chr1_1:79949768-79949787 Msa0047250:intron 30.0%
TATAGACACATCATGATGTT+TGG - chr1_1:79949896-79949915 Msa0047250:intron 30.0%
TGAAGCAAACGTTAAAAAAG+GGG + chr1_1:79949997-79950016 None:intergenic 30.0%
! TTGCCTTATGGAACAAATTT+TGG - chr1_1:79950028-79950047 Msa0047250:intron 30.0%
! CTACCAAAATTTGTTCCATA+AGG + chr1_1:79950034-79950053 None:intergenic 30.0%
AAGCAAAGTAAATGAAACCT+TGG + chr1_1:79950157-79950176 None:intergenic 30.0%
TGAATCTAAGTGATTGATGT+TGG - chr1_1:79950272-79950291 Msa0047250:intron 30.0%
TCCTTGACATAAAACACATT+GGG + chr1_1:79950794-79950813 None:intergenic 30.0%
ATCCTTGACATAAAACACAT+TGG + chr1_1:79950795-79950814 None:intergenic 30.0%
! TAGTGGATATTTGTAACTGT+CGG - chr1_1:79950859-79950878 Msa0047250:intron 30.0%
TAAAGTTTAAATTCCTGCAC+CGG + chr1_1:79950896-79950915 None:intergenic 30.0%
! GTCTGATTTTCTGTTTCAAT+TGG - chr1_1:79951039-79951058 Msa0047250:intron 30.0%
TGAGTGACTTATGTTACAAA+TGG - chr1_1:79951126-79951145 Msa0047250:intron 30.0%
AATGCCAATGTTCATTTCAT+GGG - chr1_1:79951174-79951193 Msa0047250:intron 30.0%
!!! TCAATGATGAGTGGATTTTT+TGG - chr1_1:79951214-79951233 Msa0047250:intron 30.0%
!! GTATTTCTGTGCAAAGTTTT+TGG - chr1_1:79951339-79951358 Msa0047250:intron 30.0%
TGTATTACCTTTGATTGAAG+TGG - chr1_1:79951421-79951440 Msa0047250:intron 30.0%
ATTGTAAGTTGTATCAATGC+AGG - chr1_1:79951456-79951475 Msa0047250:intron 30.0%
TTGTAAGTTGTATCAATGCA+GGG - chr1_1:79951457-79951476 Msa0047250:intron 30.0%
! ATTTTCCAGTTCAGTTAAGT+TGG - chr1_1:79951486-79951505 Msa0047250:intron 30.0%
! GGCATTCTATTATGTTGATT+AGG - chr1_1:79951507-79951526 Msa0047250:intron 30.0%
AAAATTGTTTGGTTAGACTC+CGG - chr1_1:79951617-79951636 Msa0047250:intron 30.0%
CAAATACTATTTACAGCATC+CGG + chr1_1:79951639-79951658 None:intergenic 30.0%
!! CTCTCTTTGAAGCTTAAAAA+GGG + chr1_1:79951894-79951913 None:intergenic 30.0%
!! TCTCTCTTTGAAGCTTAAAA+AGG + chr1_1:79951895-79951914 None:intergenic 30.0%
GAGAAACTTTATGGACTTTA+TGG + chr1_1:79951965-79951984 None:intergenic 30.0%
!!! CTCATTTTTTATAGTGGTTG+AGG - chr1_1:79951982-79952001 Msa0047250:intron 30.0%
AAAACTTCGCAGAGAAAATA+TGG + chr1_1:79952052-79952071 None:intergenic 30.0%
! TATTTTCTCTGCGAAGTTTT+TGG - chr1_1:79952052-79952071 Msa0047250:intron 30.0%
TCTAAGTTGTAGCAATGTTT+AGG - chr1_1:79952168-79952187 Msa0047250:intron 30.0%
CTAAGTTGTAGCAATGTTTA+GGG - chr1_1:79952169-79952188 Msa0047250:intron 30.0%
GATTGTCGTATTATTGCAAT+TGG + chr1_1:79952207-79952226 None:intergenic 30.0%
! TCTAACCTGGTATCTTATTT+CGG + chr1_1:79952585-79952604 None:intergenic 30.0%
AAAGATGACTAATTCTAACC+TGG + chr1_1:79952598-79952617 None:intergenic 30.0%
! TCTAACCTGGTATCTTATTT+CGG + chr1_1:79952585-79952604 None:intergenic 30.0%
AAAGATGACTAATTCTAACC+TGG + chr1_1:79952598-79952617 None:intergenic 30.0%
GATTTAGTTACTAGTGAAAC+AGG - chr1_1:79952656-79952675 Msa0047250:intron 30.0%
! AAACAGGATTTTCAGCATAA+TGG - chr1_1:79952672-79952691 Msa0047250:intron 30.0%
TCTCAAGAATTAAGATCTTC+TGG - chr1_1:79952759-79952778 Msa0047250:intron 30.0%
! AGACTTAATTTTCCTTTCCT+CGG + chr1_1:79952893-79952912 None:intergenic 30.0%
!! ATATGGGATGATTTGATTTG+CGG + chr1_1:79952941-79952960 None:intergenic 30.0%
AATCATCCCATATTGCTAAT+TGG - chr1_1:79952948-79952967 Msa0047250:intron 30.0%
! TATTGAAGAATTTGGAGTTG+TGG - chr1_1:79953097-79953116 Msa0047250:intron 30.0%
!! GATTTTAATGCCCTTCAAAA+AGG + chr1_1:79953129-79953148 None:intergenic 30.0%
!!! TTTTGAAGGGCATTAAAATC+TGG - chr1_1:79953129-79953148 Msa0047250:intron 30.0%
!! TTTGAAGGGCATTAAAATCT+GGG - chr1_1:79953130-79953149 Msa0047250:intron 30.0%
ATGTTAAGAATTCGAATCAG+TGG - chr1_1:79953217-79953236 Msa0047250:intron 30.0%
!!! GAATCTTTTGAGGTTATTAG+TGG - chr1_1:79953412-79953431 Msa0047250:CDS 30.0%
AGATGAACACTAGATAAGTA+GGG + chr1_1:79953472-79953491 None:intergenic 30.0%
AAGATGAACACTAGATAAGT+AGG + chr1_1:79953473-79953492 None:intergenic 30.0%
TCTATTATTATGGTTGCAGA+TGG - chr1_1:79953676-79953695 Msa0047250:CDS 30.0%
!! TTACTTTTCAGTCCCAAAAA+TGG + chr1_1:79953713-79953732 None:intergenic 30.0%
!!! ATTTTTGGGACTGAAAAGTA+AGG - chr1_1:79953712-79953731 Msa0047250:CDS 30.0%
TCAACTAATGAAGAACATCT+CGG + chr1_1:79953781-79953800 None:intergenic 30.0%
TTAGTTGAAAATGCAAAACC+GGG - chr1_1:79953793-79953812 Msa0047250:CDS 30.0%
!! GTTTAGTATTTTTATGCCGA+TGG - chr1_1:79954159-79954178 Msa0047250:exon 30.0%
CAAAACACGTTGAAACATTT+CGG + chr1_1:79954356-79954375 None:intergenic 30.0%
GAAGTAAAAATTAAGCCACT+AGG - chr1_1:79954637-79954656 Msa0047250:five_prime_UTR 30.0%
AAAATTAAGCCACTAGGATT+TGG - chr1_1:79954643-79954662 Msa0047250:five_prime_UTR 30.0%
! TGTTAGCTTACAAAAACCCA+TGG - chr1_1:79948188-79948207 Msa0047250:three_prime_UTR 35.0%
CATCGTATGAATTTAGCGAT+TGG - chr1_1:79948761-79948780 Msa0047250:three_prime_UTR 35.0%
AAACATCTTTCGTAAGTGTC+TGG + chr1_1:79948952-79948971 None:intergenic 35.0%
CACTTACGAAAGATGTTTCT+AGG - chr1_1:79948954-79948973 Msa0047250:three_prime_UTR 35.0%
TCAATCTCAGATCTCATTGA+AGG + chr1_1:79949004-79949023 None:intergenic 35.0%
! TCAATGAGATCTGAGATTGA+TGG - chr1_1:79949004-79949023 Msa0047250:intron 35.0%
! TTGTGGATTGATTGCTAACA+CGG - chr1_1:79949056-79949075 Msa0047250:intron 35.0%
! TCTTTAAGCATCCTTTTGGT+TGG - chr1_1:79949092-79949111 Msa0047250:intron 35.0%
!! CTTTAAGCATCCTTTTGGTT+GGG - chr1_1:79949093-79949112 Msa0047250:intron 35.0%
AATTGTCTGAAAGATGGTTG+GGG - chr1_1:79949532-79949551 Msa0047250:intron 35.0%
GGAGTTCATTAGTGATAACA+GGG - chr1_1:79949736-79949755 Msa0047250:intron 35.0%
! TGCTACAGTATCTGCATTTT+TGG + chr1_1:79949842-79949861 None:intergenic 35.0%
!! AACAAATTTTGGTAGTCCAG+AGG - chr1_1:79950039-79950058 Msa0047250:intron 35.0%
!! ACAAATTTTGGTAGTCCAGA+GGG - chr1_1:79950040-79950059 Msa0047250:intron 35.0%
! ACCTCGTATTCAATTTTCCA+AGG - chr1_1:79950137-79950156 Msa0047250:intron 35.0%
ACCTTGGAAAATTGAATACG+AGG + chr1_1:79950141-79950160 None:intergenic 35.0%
CAATCACTTAGATTCAACGA+CGG + chr1_1:79950268-79950287 None:intergenic 35.0%
!! TTGATGTTGGTGATGAAGAA+AGG - chr1_1:79950285-79950304 Msa0047250:intron 35.0%
!!! GTGTATGCATGCCATTTTAA+TGG - chr1_1:79950353-79950372 Msa0047250:intron 35.0%
!!! TGTGCTTTACTGTTTTTACC+TGG - chr1_1:79950442-79950461 Msa0047250:intron 35.0%
GGGTAAAATATGGTTTCTGT+TGG - chr1_1:79950600-79950619 Msa0047250:intron 35.0%
AATATGGTTTCTGTTGGTCA+CGG - chr1_1:79950606-79950625 Msa0047250:intron 35.0%
TTGTTTAACCAGAGCACAAA+CGG + chr1_1:79950762-79950781 None:intergenic 35.0%
!! AAGGATTGAGAGTGTGATTT+TGG - chr1_1:79950809-79950828 Msa0047250:intron 35.0%
ATCTCATATCTCTCATGTAG+TGG - chr1_1:79950842-79950861 Msa0047250:intron 35.0%
TTTGCAACTATGTGTACGAT+TGG - chr1_1:79950988-79951007 Msa0047250:intron 35.0%
CTGTTTCAATTGGCAATATG+TGG - chr1_1:79951049-79951068 Msa0047250:intron 35.0%
! AAATGGTTATTTGGGGTCTA+TGG - chr1_1:79951143-79951162 Msa0047250:intron 35.0%
GAATGCCAATGTTCATTTCA+TGG - chr1_1:79951173-79951192 Msa0047250:intron 35.0%
!! TTTCTGTGCAAAGTTTTTGG+TGG - chr1_1:79951342-79951361 Msa0047250:intron 35.0%
AACTAACAACTGATGTTTGC+TGG - chr1_1:79951376-79951395 Msa0047250:intron 35.0%
TTAATAGCAAGACAACACAG+TGG + chr1_1:79951591-79951610 None:intergenic 35.0%
TAGACTTCGGATGTTGTAAT+TGG - chr1_1:79951686-79951705 Msa0047250:intron 35.0%
TGCTTTACTGAGATTGAAGT+CGG - chr1_1:79951713-79951732 Msa0047250:intron 35.0%
TCTTTAGATTGGGCAATTTC+TGG + chr1_1:79951792-79951811 None:intergenic 35.0%
CTATTGTTATACAGATCGGT+AGG + chr1_1:79951838-79951857 None:intergenic 35.0%
AACAATAGTATTTAAGGGGG+TGG - chr1_1:79951850-79951869 Msa0047250:intron 35.0%
ACAATAGTATTTAAGGGGGT+GGG - chr1_1:79951851-79951870 Msa0047250:intron 35.0%
TGGACAATCTTGAGTCATAA+AGG + chr1_1:79952032-79952051 None:intergenic 35.0%
CTTTGCTCTTCTATGTTAGA+AGG - chr1_1:79952296-79952315 Msa0047250:intron 35.0%
!! ACTGGTCTTCAAATATTCCA+CGG + chr1_1:79952335-79952354 None:intergenic 35.0%
ATAAGATTCAGATCAGCAAC+TGG + chr1_1:79952353-79952372 None:intergenic 35.0%
GTTGCTGATCTGAATCTTAT+AGG - chr1_1:79952353-79952372 Msa0047250:three_prime_UTR 35.0%
GGTAAATAGCAAGTTCTACA+TGG + chr1_1:79952410-79952429 None:intergenic 35.0%
TCTTATGATCGTAATCAGCA+AGG + chr1_1:79952431-79952450 None:intergenic 35.0%
TAATTGTTGCACACCTGAAT+AGG - chr1_1:79952469-79952488 Msa0047250:CDS 35.0%
TCTAACCTAGTATCCTATTC+AGG + chr1_1:79952485-79952504 None:intergenic 35.0%
GAAACTAATTATTGCACACC+TGG - chr1_1:79952526-79952545 Msa0047250:intron 35.0%
AATTATTGCACACCTGGAAT+AGG - chr1_1:79952532-79952551 Msa0047250:intron 35.0%
CTTTACCGAAATAAGATACC+AGG - chr1_1:79952577-79952596 Msa0047250:intron 35.0%
CTTTACCGAAATAAGATACC+AGG - chr1_1:79952577-79952596 Msa0047250:intron 35.0%
AAAATGATTCGACGGATACT+TGG - chr1_1:79952786-79952805 Msa0047250:intron 35.0%
TTATAGGTCTCAGTTGTTAC+TGG - chr1_1:79952858-79952877 Msa0047250:intron 35.0%
TATAGGTCTCAGTTGTTACT+GGG - chr1_1:79952859-79952878 Msa0047250:intron 35.0%
ATTTGTGTACGCAACAAAAC+TGG - chr1_1:79952915-79952934 Msa0047250:intron 35.0%
CTGGAACCAATTAGCAATAT+GGG + chr1_1:79952957-79952976 None:intergenic 35.0%
! TCTGGAACCAATTAGCAATA+TGG + chr1_1:79952958-79952977 None:intergenic 35.0%
TGCATCATATTATCCAGTGT+TGG - chr1_1:79953030-79953049 Msa0047250:intron 35.0%
GCATCATATTATCCAGTGTT+GGG - chr1_1:79953031-79953050 Msa0047250:intron 35.0%
! AAGAATTTGGAATCCAGTCT+TGG - chr1_1:79953066-79953085 Msa0047250:intron 35.0%
! AGAATTTGGAATCCAGTCTT+GGG - chr1_1:79953067-79953086 Msa0047250:intron 35.0%
! TGTGGAAACTACCTTTTTGA+AGG - chr1_1:79953115-79953134 Msa0047250:intron 35.0%
! GTGGAAACTACCTTTTTGAA+GGG - chr1_1:79953116-79953135 Msa0047250:intron 35.0%
!! TTGAAGGGCATTAAAATCTG+GGG - chr1_1:79953131-79953150 Msa0047250:intron 35.0%
!! GCTTAGAGGCTAGTTTATTT+AGG - chr1_1:79953154-79953173 Msa0047250:intron 35.0%
TCTTGGAGTAAACTTGGTTA+TGG - chr1_1:79953242-79953261 Msa0047250:intron 35.0%
CTTGGAGTAAACTTGGTTAT+GGG - chr1_1:79953243-79953262 Msa0047250:intron 35.0%
ACTTGGTTATGGGATTATAG+TGG - chr1_1:79953253-79953272 Msa0047250:intron 35.0%
TTTCCAGCTAGATTGGAAAT+TGG - chr1_1:79953340-79953359 Msa0047250:intron 35.0%
TTTCCAATTTCCAATCTAGC+TGG + chr1_1:79953346-79953365 None:intergenic 35.0%
GCTAGATTGGAAATTGGAAA+TGG - chr1_1:79953346-79953365 Msa0047250:intron 35.0%
!! AGGTTATTAGTGGACTTCAT+GGG - chr1_1:79953422-79953441 Msa0047250:CDS 35.0%
AATCACTTGAATATGCAGAG+CGG + chr1_1:79953629-79953648 None:intergenic 35.0%
AAACCGGGTGAAATGTATTA+TGG - chr1_1:79953808-79953827 Msa0047250:CDS 35.0%
AACCGGGTGAAATGTATTAT+GGG - chr1_1:79953809-79953828 Msa0047250:CDS 35.0%
! TGAAATGTATTATGGGCTGA+GGG - chr1_1:79953816-79953835 Msa0047250:CDS 35.0%
! GGATATATTTTACCCTGTGA+TGG - chr1_1:79953853-79953872 Msa0047250:CDS 35.0%
TGTTATCTTGATCCATCACA+GGG + chr1_1:79953868-79953887 None:intergenic 35.0%
TATCAAAACACAACAAAGGC+AGG + chr1_1:79953899-79953918 None:intergenic 35.0%
!!! TGATATTTTAGCCGTGAGAT+TGG - chr1_1:79953914-79953933 Msa0047250:CDS 35.0%
AGCTTTCATTTCCAATCTCA+CGG + chr1_1:79953928-79953947 None:intergenic 35.0%
!! GAAAGCTTTAAAAGGTATGG+TGG - chr1_1:79953941-79953960 Msa0047250:CDS 35.0%
! CAAGCTGAAAGCATATAGTA+AGG + chr1_1:79954111-79954130 None:intergenic 35.0%
CTTACTATATGCTTTCAGCT+TGG - chr1_1:79954109-79954128 Msa0047250:CDS 35.0%
TGATGAAAGAGTTTATCAGC+AGG - chr1_1:79954133-79954152 Msa0047250:CDS 35.0%
GATGAAAGAGTTTATCAGCA+GGG - chr1_1:79954134-79954153 Msa0047250:CDS 35.0%
CCAAAGCACAATTAAACCAT+CGG + chr1_1:79954178-79954197 None:intergenic 35.0%
GCATTTGACATTTGAGTAGA+TGG - chr1_1:79954276-79954295 Msa0047250:intron 35.0%
! CGAAATGTTTCAACGTGTTT+TGG - chr1_1:79954354-79954373 Msa0047250:intron 35.0%
!! AATGTTTCAACGTGTTTTGG+AGG - chr1_1:79954357-79954376 Msa0047250:intron 35.0%
!!! GTGTTTTGGAGGTTTCTATA+GGG - chr1_1:79954368-79954387 Msa0047250:intron 35.0%
CTCTATGAAGTTCGGATTAT+AGG + chr1_1:79954412-79954431 None:intergenic 35.0%
TAGGAAATGTACCTACTGAT+GGG - chr1_1:79954509-79954528 Msa0047250:intron 35.0%
!! AGTTTTGTAGTGTACAATGG+AGG + chr1_1:79954703-79954722 None:intergenic 35.0%
! AAGCTCTTTGAGTTATACGG+CGG + chr1_1:79947966-79947985 None:intergenic 40.0%
! GTGTTTGTGCTTACCCTTTT+AGG - chr1_1:79948480-79948499 Msa0047250:three_prime_UTR 40.0%
! ACAGGAGGTTGATTGATGAT+CGG - chr1_1:79948696-79948715 Msa0047250:three_prime_UTR 40.0%
TGAACATGAGATGCATTCGA+GGG - chr1_1:79948796-79948815 Msa0047250:three_prime_UTR 40.0%
TGAAGTTGGAGTCTGATCTT+AGG - chr1_1:79948837-79948856 Msa0047250:three_prime_UTR 40.0%
! CAAACAAGAACTTTCTGGGA+AGG - chr1_1:79948925-79948944 Msa0047250:three_prime_UTR 40.0%
ATGCAGAAATCCCAACCAAA+AGG + chr1_1:79949106-79949125 None:intergenic 40.0%
GCAGTCAATGGAGAAAAACA+TGG - chr1_1:79949218-79949237 Msa0047250:intron 40.0%
GGAGAAAAACATGGTTTCCA+TGG - chr1_1:79949227-79949246 Msa0047250:intron 40.0%
ACGAAGTTTCTCAACTTCTC+GGG + chr1_1:79949253-79949272 None:intergenic 40.0%
CACGAAGTTTCTCAACTTCT+CGG + chr1_1:79949254-79949273 None:intergenic 40.0%
TAGCATGGATGGAAGACATT+GGG - chr1_1:79949284-79949303 Msa0047250:intron 40.0%
CATATGGAGTTAACGACTGA+AGG + chr1_1:79949358-79949377 None:intergenic 40.0%
ATTGTCTGAAAGATGGTTGG+GGG - chr1_1:79949533-79949552 Msa0047250:intron 40.0%
! AGACAAGTTAGAGAAAGCGT+GGG + chr1_1:79949673-79949692 None:intergenic 40.0%
TAGACAAGTTAGAGAAAGCG+TGG + chr1_1:79949674-79949693 None:intergenic 40.0%
GGGAGTTCATTAGTGATAAC+AGG - chr1_1:79949735-79949754 Msa0047250:intron 40.0%
AACGTTTGCTTCATTCATGC+AGG - chr1_1:79950004-79950023 Msa0047250:intron 40.0%
ATTCATGCAGGTTTGCCTTA+TGG - chr1_1:79950016-79950035 Msa0047250:intron 40.0%
!! CAAATTTTGGTAGTCCAGAG+GGG - chr1_1:79950041-79950060 Msa0047250:intron 40.0%
!! AAATTTTGGTAGTCCAGAGG+GGG - chr1_1:79950042-79950061 Msa0047250:intron 40.0%
ACACCATATCCATCTGCATA+TGG + chr1_1:79950079-79950098 None:intergenic 40.0%
AGATGGATATGGTGTTCACA+TGG - chr1_1:79950084-79950103 Msa0047250:intron 40.0%
CTTTGCTTGTGCTTCTGTTT+AGG - chr1_1:79950169-79950188 Msa0047250:intron 40.0%
CAGAGAAAGGTCCTCTTTAT+GGG - chr1_1:79950198-79950217 Msa0047250:intron 40.0%
AGAGAAAGGTCCTCTTTATG+GGG - chr1_1:79950199-79950218 Msa0047250:intron 40.0%
ACTTCGCTAACACAGCTAAA+GGG + chr1_1:79950319-79950338 None:intergenic 40.0%
TACTTCGCTAACACAGCTAA+AGG + chr1_1:79950320-79950339 None:intergenic 40.0%
ATATGGTTTCTGTTGGTCAC+GGG - chr1_1:79950607-79950626 Msa0047250:intron 40.0%
AATCATGTGAGCTGAAGTTC+AGG - chr1_1:79950678-79950697 Msa0047250:intron 40.0%
TTGTGCTCTGGTTAAACAAG+TGG - chr1_1:79950763-79950782 Msa0047250:intron 40.0%
! GCCCAATGTGTTTTATGTCA+AGG - chr1_1:79950790-79950809 Msa0047250:intron 40.0%
CATGCCCATGAAATGAACAT+TGG + chr1_1:79951181-79951200 None:intergenic 40.0%
!! TTTGGAAGTGCTTGCTGTTA+TGG - chr1_1:79951232-79951251 Msa0047250:intron 40.0%
! GAAGTTTCCGTACTCACTTT+TGG - chr1_1:79951254-79951273 Msa0047250:intron 40.0%
! GTTGACTCCAAAAGTGAGTA+CGG + chr1_1:79951264-79951283 None:intergenic 40.0%
! TGTCATGCCACTTCAATCAA+AGG + chr1_1:79951431-79951450 None:intergenic 40.0%
GAATGCCAACTTAACTGAAC+TGG + chr1_1:79951494-79951513 None:intergenic 40.0%
AACCACAAGTATGTTGCACA+TGG - chr1_1:79951533-79951552 Msa0047250:intron 40.0%
ATCCATGTGCAACATACTTG+TGG + chr1_1:79951538-79951557 None:intergenic 40.0%
TTTACTGAGATTGAAGTCGG+TGG - chr1_1:79951716-79951735 Msa0047250:intron 40.0%
CAATAGTATTTAAGGGGGTG+GGG - chr1_1:79951852-79951871 Msa0047250:intron 40.0%
!! TTTCTCTGCGAAGTTTTTGG+TGG - chr1_1:79952055-79952074 Msa0047250:intron 40.0%
! TAACTACTGCTGTTTGCTAG+AGG - chr1_1:79952085-79952104 Msa0047250:intron 40.0%
! AACTACTGCTGTTTGCTAGA+GGG - chr1_1:79952086-79952105 Msa0047250:intron 40.0%
!!! GGGATGCATTTGTTTTGAAC+TGG - chr1_1:79952123-79952142 Msa0047250:intron 40.0%
ATCTACCATCACCATACTTG+TGG + chr1_1:79952253-79952272 None:intergenic 40.0%
!! ACAAGTATGGTGATGGTAGA+TGG - chr1_1:79952252-79952271 Msa0047250:intron 40.0%
!! CAAGTATGGTGATGGTAGAT+GGG - chr1_1:79952253-79952272 Msa0047250:intron 40.0%
!! AAGTATGGTGATGGTAGATG+GGG - chr1_1:79952254-79952273 Msa0047250:intron 40.0%
! CTGGTCTTCAAATATTCCAC+GGG + chr1_1:79952334-79952353 None:intergenic 40.0%
! GGATTTTCAGCATAATGGTC+AGG - chr1_1:79952677-79952696 Msa0047250:intron 40.0%
CTGGAGCTAAAATGATTCGA+CGG - chr1_1:79952778-79952797 Msa0047250:intron 40.0%
CAATAAGTGAATCCCAACAC+TGG + chr1_1:79953046-79953065 None:intergenic 40.0%
CAATAAGTGAATCCCAAGAC+TGG + chr1_1:79953082-79953101 None:intergenic 40.0%
!! TGAAGGGCATTAAAATCTGG+GGG - chr1_1:79953132-79953151 Msa0047250:intron 40.0%
ATTAAAATCTGGGGGCTTAG+AGG - chr1_1:79953140-79953159 Msa0047250:intron 40.0%
! AATTCGAATCAGTGGACTCT+TGG - chr1_1:79953225-79953244 Msa0047250:intron 40.0%
!! GAGGTTATTAGTGGACTTCA+TGG - chr1_1:79953421-79953440 Msa0047250:CDS 40.0%
!! GGTTATTAGTGGACTTCATG+GGG - chr1_1:79953423-79953442 Msa0047250:CDS 40.0%
!! GAGAGCTGGAAACCATTTTT+GGG - chr1_1:79953698-79953717 Msa0047250:CDS 40.0%
! CATAATGCTGCGAGATTTTG+CGG - chr1_1:79953751-79953770 Msa0047250:CDS 40.0%
AGCCCATAATACATTTCACC+CGG + chr1_1:79953814-79953833 None:intergenic 40.0%
! GTGAAATGTATTATGGGCTG+AGG - chr1_1:79953815-79953834 Msa0047250:CDS 40.0%
GTGTTATCTTGATCCATCAC+AGG + chr1_1:79953869-79953888 None:intergenic 40.0%
! AAGCATATAGTAAGGCACCA+AGG + chr1_1:79954103-79954122 None:intergenic 40.0%
CCGATGGTTTAATTGTGCTT+TGG - chr1_1:79954175-79954194 Msa0047250:intron 40.0%
AATGCACAAGCCCAACTAAA+GGG + chr1_1:79954261-79954280 None:intergenic 40.0%
AAATGCACAAGCCCAACTAA+AGG + chr1_1:79954262-79954281 None:intergenic 40.0%
AGTTTCTTGCACGCTCTATT+TGG - chr1_1:79954320-79954339 Msa0047250:intron 40.0%
!!! CGTGTTTTGGAGGTTTCTAT+AGG - chr1_1:79954367-79954386 Msa0047250:intron 40.0%
TATAGGGTATGTATGCCGTT+CGG - chr1_1:79954384-79954403 Msa0047250:intron 40.0%
TTCGGATTATAGGATCCGAA+CGG + chr1_1:79954402-79954421 None:intergenic 40.0%
GTAGGAAATGTACCTACTGA+TGG - chr1_1:79954508-79954527 Msa0047250:intron 40.0%
AGGAAATGTACCTACTGATG+GGG - chr1_1:79954510-79954529 Msa0047250:intron 40.0%
GCATACTATCCAAATCCTAG+TGG + chr1_1:79954655-79954674 None:intergenic 40.0%
GGATTTGGATAGTATGCATG+AGG - chr1_1:79954658-79954677 Msa0047250:five_prime_UTR 40.0%
! TTGGTGGCTCTCTATGAACA+CGG + chr1_1:79948529-79948548 None:intergenic 45.0%
TCTAACAATGCTGGATGAGG+TGG + chr1_1:79948626-79948645 None:intergenic 45.0%
ACCTCATCCAGCATTGTTAG+AGG - chr1_1:79948625-79948644 Msa0047250:three_prime_UTR 45.0%
TCCTCTAACAATGCTGGATG+AGG + chr1_1:79948629-79948648 None:intergenic 45.0%
AGCTCTTCCTCTAACAATGC+TGG + chr1_1:79948635-79948654 None:intergenic 45.0%
AAGTGCAGCATGCTGAAATG+AGG - chr1_1:79948657-79948676 Msa0047250:three_prime_UTR 45.0%
CTGAACATGAGATGCATTCG+AGG - chr1_1:79948795-79948814 Msa0047250:three_prime_UTR 45.0%
GAAGGCAAACATGGAGTTCA+TGG - chr1_1:79949188-79949207 Msa0047250:intron 45.0%
ACATGGAGTTCATGGAACAG+AGG - chr1_1:79949196-79949215 Msa0047250:intron 45.0%
CTAGCATGGATGGAAGACAT+TGG - chr1_1:79949283-79949302 Msa0047250:intron 45.0%
AGCATGGATGGAAGACATTG+GGG - chr1_1:79949285-79949304 Msa0047250:intron 45.0%
! TAGAGAAAGCGTGGGAGTTA+AGG + chr1_1:79949665-79949684 None:intergenic 45.0%
!! TCTTTTGACTGGCAGTGTTG+AGG - chr1_1:79949779-79949798 Msa0047250:intron 45.0%
!! CTTTTGACTGGCAGTGTTGA+GGG - chr1_1:79949780-79949799 Msa0047250:intron 45.0%
ATCCCACAAGGTGTATACGT+AGG - chr1_1:79949810-79949829 Msa0047250:intron 45.0%
TCCCACAAGGTGTATACGTA+GGG - chr1_1:79949811-79949830 Msa0047250:intron 45.0%
TCCCTACGTATACACCTTGT+GGG + chr1_1:79949815-79949834 None:intergenic 45.0%
ATCCCTACGTATACACCTTG+TGG + chr1_1:79949816-79949835 None:intergenic 45.0%
!! AATTTTGGTAGTCCAGAGGG+GGG - chr1_1:79950043-79950062 Msa0047250:intron 45.0%
ATCCATCTGCATATGGAGGT+GGG + chr1_1:79950072-79950091 None:intergenic 45.0%
TATCCATCTGCATATGGAGG+TGG + chr1_1:79950073-79950092 None:intergenic 45.0%
CCATATCCATCTGCATATGG+AGG + chr1_1:79950076-79950095 None:intergenic 45.0%
CCTCCATATGCAGATGGATA+TGG - chr1_1:79950073-79950092 Msa0047250:intron 45.0%
GCAGAGAAAGGTCCTCTTTA+TGG - chr1_1:79950197-79950216 Msa0047250:intron 45.0%
AAAGGTCCTCTTTATGGGGT+GGG - chr1_1:79950203-79950222 Msa0047250:intron 45.0%
TAGCTGTGTTAGCGAAGTAG+CGG - chr1_1:79950321-79950340 Msa0047250:intron 45.0%
! ACTGCAGCAATGTTTTCTCC+AGG + chr1_1:79950463-79950482 None:intergenic 45.0%
GCTCACATGATTCAACACGT+GGG + chr1_1:79950670-79950689 None:intergenic 45.0%
AGCTCACATGATTCAACACG+TGG + chr1_1:79950671-79950690 None:intergenic 45.0%
AGTTTAAATTCCTGCACCGG+TGG + chr1_1:79950893-79950912 None:intergenic 45.0%
CGATTGGATAACAATCTCCC+AGG - chr1_1:79951004-79951023 Msa0047250:intron 45.0%
TAACAATCTCCCAGGAATGC+TGG - chr1_1:79951012-79951031 Msa0047250:intron 45.0%
! GCAATATGTGGTCTTGCAAC+TGG - chr1_1:79951061-79951080 Msa0047250:intron 45.0%
TGCAAGCTCTCAATGATGAG+TGG - chr1_1:79951205-79951224 Msa0047250:intron 45.0%
! ACAACTGATGTTTGCTGGCA+TGG - chr1_1:79951381-79951400 Msa0047250:intron 45.0%
ATAGCAAGACAACACAGTGG+AGG + chr1_1:79951588-79951607 None:intergenic 45.0%
TGAGATTGAAGTCGGTGGTA+GGG - chr1_1:79951721-79951740 Msa0047250:intron 45.0%
GGAAACCACAAGTATGGTGA+TGG - chr1_1:79952245-79952264 Msa0047250:intron 45.0%
GCTCTTCTATGTTAGAAGGC+CGG - chr1_1:79952300-79952319 Msa0047250:intron 45.0%
GCACACCTGAATAGGATACT+AGG - chr1_1:79952477-79952496 Msa0047250:CDS 45.0%
CTAACTGGGTATCCTATTCC+AGG + chr1_1:79952547-79952566 None:intergenic 45.0%
! GCTAATTGGTTCCAGAGTAC+AGG - chr1_1:79952962-79952981 Msa0047250:intron 45.0%
AACTGAGTGATCCTGTACTC+TGG + chr1_1:79952976-79952995 None:intergenic 45.0%
GTGGACTCTTGGAGTAAACT+TGG - chr1_1:79953236-79953255 Msa0047250:intron 45.0%
CCTCCACATACTAGGCAAAA+CGG + chr1_1:79953292-79953311 None:intergenic 45.0%
! TGCCTAGTATGTGGAGGTTT+TGG - chr1_1:79953295-79953314 Msa0047250:intron 45.0%
! GCCTAGTATGTGGAGGTTTT+GGG - chr1_1:79953296-79953315 Msa0047250:intron 45.0%
! CCTAGTATGTGGAGGTTTTG+GGG - chr1_1:79953297-79953316 Msa0047250:intron 45.0%
AACCTGCTTTCCAGCTAGAT+TGG - chr1_1:79953333-79953352 Msa0047250:intron 45.0%
TTCCAATCTAGCTGGAAAGC+AGG + chr1_1:79953338-79953357 None:intergenic 45.0%
!! TATTAGTGGACTTCATGGGG+TGG - chr1_1:79953426-79953445 Msa0047250:CDS 45.0%
GGTGGTGAATGCTAGATGTT+TGG - chr1_1:79953444-79953463 Msa0047250:CDS 45.0%
! GGAGAGCTGGAAACCATTTT+TGG - chr1_1:79953697-79953716 Msa0047250:CDS 45.0%
CGCAAAATCTCGCAGCATTA+TGG + chr1_1:79953753-79953772 None:intergenic 45.0%
! TTCAATTGGGTTGTCCTCCT+TGG - chr1_1:79954083-79954102 Msa0047250:CDS 45.0%
! CATATAGTAAGGCACCAAGG+AGG + chr1_1:79954100-79954119 None:intergenic 45.0%
GAAAGAGTTTATCAGCAGGG+CGG - chr1_1:79954137-79954156 Msa0047250:CDS 45.0%
! GGGGGCGACAATCTAAAATT+TGG + chr1_1:79954219-79954238 None:intergenic 45.0%
GTGCAAGAAACTCATAGGGT+GGG + chr1_1:79954312-79954331 None:intergenic 45.0%
GAGCGTGCAAGAAACTCATA+GGG + chr1_1:79954316-79954335 None:intergenic 45.0%
AGAGCGTGCAAGAAACTCAT+AGG + chr1_1:79954317-79954336 None:intergenic 45.0%
GGAAATGTACCTACTGATGG+GGG - chr1_1:79954511-79954530 Msa0047250:intron 45.0%
TCTTCCTACTCGCGTCTAAA+TGG + chr1_1:79954537-79954556 None:intergenic 45.0%
GATAGTATGCATGAGGTCCT+AGG - chr1_1:79954665-79954684 Msa0047250:five_prime_UTR 45.0%
!!! TTTATTTTTCAAATTATTAT+CGG - chr1_1:79948394-79948413 Msa0047250:three_prime_UTR 5.0%
TGTCGTGTTGGATCCTGACA+CGG + chr1_1:79948344-79948363 None:intergenic 50.0%
TACACGTGTCAGTGTCGTGT+TGG + chr1_1:79948356-79948375 None:intergenic 50.0%
CACCAATGAGTTCCCGAAGA+GGG - chr1_1:79948543-79948562 Msa0047250:three_prime_UTR 50.0%
TACCCTCTTCGGGAACTCAT+TGG + chr1_1:79948548-79948567 None:intergenic 50.0%
!! TTCCCGAAGAGGGTATCCAT+CGG - chr1_1:79948553-79948572 Msa0047250:three_prime_UTR 50.0%
TTCCGATGGATACCCTCTTC+GGG + chr1_1:79948558-79948577 None:intergenic 50.0%
CTTCCGATGGATACCCTCTT+CGG + chr1_1:79948559-79948578 None:intergenic 50.0%
! ATATGCTGTCGTGGCATTGG+TGG + chr1_1:79948602-79948621 None:intergenic 50.0%
GGAATATGCTGTCGTGGCAT+TGG + chr1_1:79948605-79948624 None:intergenic 50.0%
TGAGGTGGAATATGCTGTCG+TGG + chr1_1:79948611-79948630 None:intergenic 50.0%
TGCAGCATGCTGAAATGAGG+AGG - chr1_1:79948660-79948679 Msa0047250:three_prime_UTR 50.0%
CATGGAACAGAGGCAGTCAA+TGG - chr1_1:79949206-79949225 Msa0047250:intron 50.0%
TTTCTCAACTTCTCGGGCCA+TGG + chr1_1:79949247-79949266 None:intergenic 50.0%
TTCCCACCTCCATATGCAGA+TGG - chr1_1:79950067-79950086 Msa0047250:intron 50.0%
GTTTAGGCTGCTGCAGAGAA+AGG - chr1_1:79950185-79950204 Msa0047250:intron 50.0%
GAAAGGTCCTCTTTATGGGG+TGG - chr1_1:79950202-79950221 Msa0047250:intron 50.0%
ATTCAACGACGGTTTGAGCG+AGG + chr1_1:79950257-79950276 None:intergenic 50.0%
AACACAGCTAAAGGGATGGC+AGG + chr1_1:79950311-79950330 None:intergenic 50.0%
CGCTAACACAGCTAAAGGGA+TGG + chr1_1:79950315-79950334 None:intergenic 50.0%
AACTCAGCATTGCAGCCATG+AGG - chr1_1:79950634-79950653 Msa0047250:intron 50.0%
GTGGGAGCTACAAAACCTCA+TGG + chr1_1:79950652-79950671 None:intergenic 50.0%
CAGACATCACCAGCATTCCT+GGG + chr1_1:79951024-79951043 None:intergenic 50.0%
TCAGACATCACCAGCATTCC+TGG + chr1_1:79951025-79951044 None:intergenic 50.0%
! TGTGGTCTTGCAACTGGTGA+AGG - chr1_1:79951067-79951086 Msa0047250:intron 50.0%
! ACTGATGTTTGCTGGCATGG+AGG - chr1_1:79951384-79951403 Msa0047250:intron 50.0%
! CTGATGTTTGCTGGCATGGA+GGG - chr1_1:79951385-79951404 Msa0047250:intron 50.0%
CTGAGATTGAAGTCGGTGGT+AGG - chr1_1:79951720-79951739 Msa0047250:intron 50.0%
GAAGTCGGTGGTAGGGATAT+AGG - chr1_1:79951728-79951747 Msa0047250:intron 50.0%
! TACTGCTGTTTGCTAGAGGG+TGG - chr1_1:79952089-79952108 Msa0047250:intron 50.0%
TAGAGGGTGGCTGTTGTTAG+TGG - chr1_1:79952102-79952121 Msa0047250:intron 50.0%
AGAGGGTGGCTGTTGTTAGT+GGG - chr1_1:79952103-79952122 Msa0047250:intron 50.0%
GGATGGGGAAACCACAAGTA+TGG - chr1_1:79952239-79952258 Msa0047250:intron 50.0%
TTCAAATATTCCACGGGCCC+AGG + chr1_1:79952328-79952347 None:intergenic 50.0%
ATTCGACGGATACTTGGAGC+TGG - chr1_1:79952792-79952811 Msa0047250:intron 50.0%
TGGAGCTGGCTGAAGTTGTA+TGG - chr1_1:79952806-79952825 Msa0047250:intron 50.0%
AGCTGGCTGAAGTTGTATGG+TGG - chr1_1:79952809-79952828 Msa0047250:intron 50.0%
GTTACTGGGCTTCTAATCCG+AGG - chr1_1:79952873-79952892 Msa0047250:intron 50.0%
TGGGCTTCTAATCCGAGGAA+AGG - chr1_1:79952878-79952897 Msa0047250:intron 50.0%
CCACATACTAGGCAAAACGG+TGG + chr1_1:79953289-79953308 None:intergenic 50.0%
! CCACCGTTTTGCCTAGTATG+TGG - chr1_1:79953286-79953305 Msa0047250:intron 50.0%
! CCGTTTTGCCTAGTATGTGG+AGG - chr1_1:79953289-79953308 Msa0047250:intron 50.0%
CCCCAAAACCTCCACATACT+AGG + chr1_1:79953300-79953319 None:intergenic 50.0%
TATGGTTGCAGATGGAGAGC+TGG - chr1_1:79953684-79953703 Msa0047250:CDS 50.0%
TCGCAGCATTATGGTGTGTG+GGG + chr1_1:79953744-79953763 None:intergenic 50.0%
CTCGCAGCATTATGGTGTGT+GGG + chr1_1:79953745-79953764 None:intergenic 50.0%
TCTCGCAGCATTATGGTGTG+TGG + chr1_1:79953746-79953765 None:intergenic 50.0%
! ATTATGGGCTGAGGGCAAGT+AGG - chr1_1:79953824-79953843 Msa0047250:CDS 50.0%
! TTATGGGCTGAGGGCAAGTA+GGG - chr1_1:79953825-79953844 Msa0047250:CDS 50.0%
CGTGCAAGAAACTCATAGGG+TGG + chr1_1:79954313-79954332 None:intergenic 50.0%
TCCGAACTTCATAGAGCGTG+CGG - chr1_1:79954416-79954435 Msa0047250:intron 50.0%
TCTAAATGGCCCCCATCAGT+AGG + chr1_1:79954523-79954542 None:intergenic 50.0%
GGAGGTAACGACTTCAACCT+AGG + chr1_1:79954685-79954704 None:intergenic 50.0%
GTTATACGGCGGCGTCGTTT+GGG + chr1_1:79947955-79947974 None:intergenic 55.0%
AGTTATACGGCGGCGTCGTT+TGG + chr1_1:79947956-79947975 None:intergenic 55.0%
AAGAAGAGGGTCGCGTACGA+TGG + chr1_1:79948022-79948041 None:intergenic 55.0%
ATGGAAGACGTGTCCGTGTC+AGG - chr1_1:79948328-79948347 Msa0047250:three_prime_UTR 55.0%
CCTCTTCGGGAACTCATTGG+TGG + chr1_1:79948545-79948564 None:intergenic 55.0%
CCACCAATGAGTTCCCGAAG+AGG - chr1_1:79948542-79948561 Msa0047250:three_prime_UTR 55.0%
!! CGAAGAGGGTATCCATCGGA+AGG - chr1_1:79948557-79948576 Msa0047250:three_prime_UTR 55.0%
CGAGCATAAGGACCTTCCGA+TGG + chr1_1:79948572-79948591 None:intergenic 55.0%
TCGGAAGGTCCTTATGCTCG+CGG - chr1_1:79948572-79948591 Msa0047250:three_prime_UTR 55.0%
GCATGCTGAAATGAGGAGGC+TGG - chr1_1:79948664-79948683 Msa0047250:three_prime_UTR 55.0%
TGCTGAAATGAGGAGGCTGG+TGG - chr1_1:79948667-79948686 Msa0047250:three_prime_UTR 55.0%
TGAAATGAGGAGGCTGGTGG+CGG - chr1_1:79948670-79948689 Msa0047250:three_prime_UTR 55.0%
ACCAAGAACTGATGCGCGCT+AGG - chr1_1:79949032-79949051 Msa0047250:intron 55.0%
ACCTAGCGCGCATCAGTTCT+TGG + chr1_1:79949036-79949055 None:intergenic 55.0%
ACTGATGCGCGCTAGGTTTG+TGG - chr1_1:79949039-79949058 Msa0047250:intron 55.0%
!! TCGTGCTGAGCTTGCTAGCA+TGG - chr1_1:79949269-79949288 Msa0047250:intron 55.0%
!! GCTGAGCTTGCTAGCATGGA+TGG - chr1_1:79949273-79949292 Msa0047250:intron 55.0%
GATGGAAGACATTGGGGAGC+TGG - chr1_1:79949291-79949310 Msa0047250:intron 55.0%
! TTGACTGGCAGTGTTGAGGG+TGG - chr1_1:79949783-79949802 Msa0047250:intron 55.0%
GCAGTACCCACCCCATAAAG+AGG + chr1_1:79950212-79950231 None:intergenic 55.0%
! ATGGGGTGGGTACTGCTTCT+AGG - chr1_1:79950216-79950235 Msa0047250:intron 55.0%
!! TGGTGTTGCCGTTTGTGCTC+TGG - chr1_1:79950751-79950770 Msa0047250:intron 55.0%
ACTGTCGGAGAAGTCACCAC+CGG - chr1_1:79950874-79950893 Msa0047250:intron 55.0%
! ATGTTTGCTGGCATGGAGGG+TGG - chr1_1:79951388-79951407 Msa0047250:intron 55.0%
TATGTTAGAAGGCCGGTGCC+TGG - chr1_1:79952307-79952326 Msa0047250:intron 55.0%
ATGTTAGAAGGCCGGTGCCT+GGG - chr1_1:79952308-79952327 Msa0047250:intron 55.0%
CCCGCACGCTCTATGAAGTT+CGG + chr1_1:79954420-79954439 None:intergenic 55.0%
CCGAACTTCATAGAGCGTGC+GGG - chr1_1:79954417-79954436 Msa0047250:intron 55.0%
AGAGCGTGCGGGAAACTCAT+AGG - chr1_1:79954428-79954447 Msa0047250:intron 55.0%
CGTGCGGGAAACTCATAGGT+TGG - chr1_1:79954432-79954451 Msa0047250:intron 55.0%
CGGAAGGTCCTTATGCTCGC+GGG - chr1_1:79948573-79948592 Msa0047250:three_prime_UTR 60.0%
!! TGCTGTCGTGGCATTGGTGG+TGG + chr1_1:79948599-79948618 None:intergenic 60.0%
AGACCTTGCAGCTGCGAAGG+AGG - chr1_1:79948733-79948752 Msa0047250:three_prime_UTR 60.0%
! ACTGGCAGTGTTGAGGGTGG+TGG - chr1_1:79949786-79949805 Msa0047250:intron 60.0%
! GAGGGTGGTGGTATCCCACA+AGG - chr1_1:79949798-79949817 Msa0047250:intron 60.0%
CTGAGGGCAAGTAGGGCACA+GGG - chr1_1:79953832-79953851 Msa0047250:CDS 60.0%
GGGGCCATTTAGACGCGAGT+AGG - chr1_1:79954530-79954549 Msa0047250:intron 60.0%
!! GGAGGCTGGTGGCGGATAAC+AGG - chr1_1:79948678-79948697 Msa0047250:three_prime_UTR 65.0%
!! GGCTGGTGGCGGATAACAGG+AGG - chr1_1:79948681-79948700 Msa0047250:three_prime_UTR 65.0%
GCGAGACCTTGCAGCTGCGA+AGG - chr1_1:79948730-79948749 Msa0047250:three_prime_UTR 65.0%
GCTCCTCCTTCGCAGCTGCA+AGG + chr1_1:79948739-79948758 None:intergenic 65.0%
GGAGAAGTCACCACCGGTGC+AGG - chr1_1:79950880-79950899 Msa0047250:intron 65.0%
TTGCTGGCATGGAGGGTGGC+TGG - chr1_1:79951392-79951411 Msa0047250:intron 65.0%
TATTCCACGGGCCCAGGCAC+CGG + chr1_1:79952322-79952341 None:intergenic 65.0%
GCTGAGGGCAAGTAGGGCAC+AGG - chr1_1:79953831-79953850 Msa0047250:CDS 65.0%
! GGTGGTGGCCCGCGAGCATA+AGG + chr1_1:79948584-79948603 None:intergenic 70.0%
GGAGGTGGGAAACCCCCCTC+TGG + chr1_1:79950058-79950077 None:intergenic 70.0%
! AAGGCCGGTGCCTGGGCCCG+TGG - chr1_1:79952315-79952334 Msa0047250:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79947934 79954753 79947934 ID=Msa0047250;Name=Msa0047250
chr1_1 mRNA 79947934 79954753 79947934 ID=Msa0047250-mRNA-1;Parent=Msa0047250;Name=Msa0047250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=175|1|1|1|0.6|0.5|6|1159|283
chr1_1 exon 79947934 79948992 79947934 ID=Msa0047250-mRNA-1:exon:27608;Parent=Msa0047250-mRNA-1
chr1_1 exon 79952313 79952496 79952313 ID=Msa0047250-mRNA-1:exon:27607;Parent=Msa0047250-mRNA-1
chr1_1 exon 79952582 79952661 79952582 ID=Msa0047250-mRNA-1:exon:27606;Parent=Msa0047250-mRNA-1
chr1_1 exon 79953375 79953520 79953375 ID=Msa0047250-mRNA-1:exon:27605;Parent=Msa0047250-mRNA-1
chr1_1 exon 79953634 79954185 79953634 ID=Msa0047250-mRNA-1:exon:27604;Parent=Msa0047250-mRNA-1
chr1_1 exon 79954589 79954753 79954589 ID=Msa0047250-mRNA-1:exon:27603;Parent=Msa0047250-mRNA-1
chr1_1 five_prime_UTR 79954589 79954753 79954589 ID=Msa0047250-mRNA-1:five_prime_utr;Parent=Msa0047250-mRNA-1
chr1_1 five_prime_UTR 79954176 79954185 79954176 ID=Msa0047250-mRNA-1:five_prime_utr;Parent=Msa0047250-mRNA-1
chr1_1 CDS 79953634 79954175 79953634 ID=Msa0047250-mRNA-1:cds;Parent=Msa0047250-mRNA-1
chr1_1 CDS 79953375 79953520 79953375 ID=Msa0047250-mRNA-1:cds;Parent=Msa0047250-mRNA-1
chr1_1 CDS 79952582 79952661 79952582 ID=Msa0047250-mRNA-1:cds;Parent=Msa0047250-mRNA-1
chr1_1 CDS 79952413 79952496 79952413 ID=Msa0047250-mRNA-1:cds;Parent=Msa0047250-mRNA-1
chr1_1 three_prime_UTR 79952313 79952412 79952313 ID=Msa0047250-mRNA-1:three_prime_utr;Parent=Msa0047250-mRNA-1
chr1_1 three_prime_UTR 79947934 79948992 79947934 ID=Msa0047250-mRNA-1:three_prime_utr;Parent=Msa0047250-mRNA-1
Gene Sequence

>Msa0047250

ATGGGATCAAGACACCGTGTTCATAGAGAGCCACCAATGAGTTCCCGAAGAGGGTATCCATCGGAAGGTCCTTATGCTCGCGGGCCACCACCAATGCCACGACAGCATATTCCACCTCATCCAGCATTGTTAGAGGAAGAGCTTGAAGTGCAGCATGCTGAAATGAGGAGGCTGGTGGCGGATAACAGGAGGTTGATTGATGATCGGATGACGTTGCAGCGAGACCTTGCAGCTGCGAAGGAGGAGCTTCATCGTATGAATTTAGCGATTGGCGATATTCGTGCTGAACATGAGATGCATTCGAGGGAGCTTGTTGATAAAAATATGAAGTTGGAGTCTGATCTTAGGTCGACTGAGCCGTTGAAGAATGAAGTTATACAACTGCGAGCTGAAGTTCAAAAACTTAGTAGTATCAAACAAGAACTTTCTGGGAAGGTCCAGACACTTACGAAAGATGTTTCTAGGTTACAGTCTGATAATCAACAAATTCCTTCAATGAGATCTGAGATTGATGGTTTGCACCAAGAACTGATGCGCGCTAGAACTATGGTGGATTATGAAAAGAAGGCAAACATGGAGTTCATGGAACAGAGGCAGTCAATGGAGAAAAACATGGTTTCCATGGCCCGAGAAGTTGAGAAACTTCGTGCTGAGCTTGCTAGCATGGATGGAAGACATTGGGGAGCTGGTTTGCCTTATGGAACAAATTTTGGTAGTCCAGAGGGGGGTTTCCCACCTCCATATGCAGATGGATATGGTGTTCACATGGCTGCTGCAGAGAAAGGTCCTCTTTATGGGGTGGGTACTGCTTCTAGGAAAGCACACGAGAAGCCTCGCTCAAACCGTCGTTGA
Protein sequence

>Msa0047250

MGSRHRVHREPPMSSRRGYPSEGPYARGPPPMPRQHIPPHPALLEEELEVQHAEMRRLVADNRRLIDDRMTLQRDLAAAKEELHRMNLAIGDIRAEHEMHSRELVDKNMKLESDLRSTEPLKNEVIQLRAEVQKLSSIKQELSGKVQTLTKDVSRLQSDNQQIPSMRSEIDGLHQELMRARTMVDYEKKANMEFMEQRQSMEKNMVSMAREVEKLRAELASMDGRHWGAGLPYGTNFGSPEGGFPPPYADGYGVHMAAAEKGPLYGVGTASRKAHEKPRSNRR*