Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239510 | XP_003594311.2 | 96.918 | 584 | 15 | 1 | 1 | 581 | 1 | 584 | 0.0 | 1097 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239510 | sp|Q9FWW5|Y1215_ARATH | 45.536 | 560 | 274 | 8 | 11 | 563 | 8 | 543 | 6.87e-127 | 386 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239510 | Q2HV31 | 96.918 | 584 | 15 | 1 | 1 | 581 | 1 | 584 | 0.0 | 1097 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027390 | Msa0239510 | 0.806104 | 9.673728e-50 | -8.615850e-47 |
| Msa0032370 | Msa0239510 | 0.800964 | 1.125771e-48 | -8.615850e-47 |
| Msa0044210 | Msa0239510 | 0.806308 | 8.759803e-50 | -8.615850e-47 |
| Msa0048000 | Msa0239510 | 0.800678 | 1.287749e-48 | -8.615850e-47 |
| Msa0050730 | Msa0239510 | 0.804313 | 2.293385e-49 | -8.615850e-47 |
| Msa0050760 | Msa0239510 | 0.805797 | 1.122435e-49 | -8.615850e-47 |
| Msa0102750 | Msa0239510 | 0.822616 | 2.154034e-53 | -8.615850e-47 |
| Msa0105420 | Msa0239510 | 0.812484 | 4.142127e-51 | -8.615850e-47 |
| Msa0165300 | Msa0239510 | 0.810667 | 1.028674e-50 | -8.615850e-47 |
| Msa0183590 | Msa0239510 | 0.807204 | 5.666412e-50 | -8.615850e-47 |
| Msa0197850 | Msa0239510 | 0.915524 | 5.313535e-85 | -8.615850e-47 |
| Msa0239510 | Msa0260810 | 0.807602 | 4.665352e-50 | -8.615850e-47 |
| Msa0239510 | Msa0276920 | 0.828714 | 7.712057e-55 | -8.615850e-47 |
| Msa0239510 | Msa0287310 | 0.802448 | 5.583777e-49 | -8.615850e-47 |
| Msa0239510 | Msa0316850 | 0.800297 | 1.539850e-48 | -8.615850e-47 |
| Msa0239510 | Msa0317390 | 0.928638 | 2.174330e-92 | -8.615850e-47 |
| Msa0239510 | Msa0317770 | 0.936600 | 1.340111e-97 | -8.615850e-47 |
| Msa0239510 | Msa0334350 | 0.827484 | 1.525262e-54 | -8.615850e-47 |
| Msa0239510 | Msa0335040 | 0.835599 | 1.527721e-56 | -8.615850e-47 |
| Msa0239510 | Msa0426330 | 0.811194 | 7.910417e-51 | -8.615850e-47 |
| Msa0239510 | Msa0452960 | 0.826149 | 3.177689e-54 | -8.615850e-47 |
| Msa0239510 | Msa0464900 | 0.820914 | 5.332593e-53 | -8.615850e-47 |
| Msa0239510 | Msa0484780 | 0.810425 | 1.159968e-50 | -8.615850e-47 |
| Msa0239510 | Msa0505770 | 0.803721 | 3.045489e-49 | -8.615850e-47 |
| Msa0239510 | Msa0506890 | 0.810671 | 1.026558e-50 | -8.615850e-47 |
| Msa0239510 | Msa0547400 | 0.835729 | 1.416107e-56 | -8.615850e-47 |
| Msa0239510 | Msa0602120 | 0.826728 | 2.313283e-54 | -8.615850e-47 |
| Msa0239510 | Msa0638280 | 0.808547 | 2.934974e-50 | -8.615850e-47 |
| Msa0239510 | Msa0643250 | 0.831649 | 1.481282e-55 | -8.615850e-47 |
| Msa0239510 | Msa0648520 | 0.810506 | 1.114258e-50 | -8.615850e-47 |
| Msa0239510 | Msa0677270 | 0.809410 | 1.918850e-50 | -8.615850e-47 |
| Msa0239510 | Msa0691050 | 0.814230 | 1.712966e-51 | -8.615850e-47 |
| Msa0239510 | Msa0693380 | 0.819835 | 9.425122e-53 | -8.615850e-47 |
| Msa0239510 | Msa0715110 | 0.822020 | 2.961040e-53 | -8.615850e-47 |
| Msa0239510 | Msa0754720 | -0.820156 | 7.961621e-53 | -8.615850e-47 |
| Msa0239510 | Msa0756630 | -0.801699 | 7.958478e-49 | -8.615850e-47 |
| Msa0239510 | Msa0770350 | 0.810132 | 1.341701e-50 | -8.615850e-47 |
| Msa0239510 | Msa0798070 | 0.804328 | 2.276949e-49 | -8.615850e-47 |
| Msa0239510 | Msa0840260 | 0.813904 | 2.020835e-51 | -8.615850e-47 |
| Msa0239510 | Msa0881020 | 0.817501 | 3.191322e-52 | -8.615850e-47 |
| Msa0239510 | Msa0881030 | 0.817924 | 2.562216e-52 | -8.615850e-47 |
| Msa0239510 | Msa0893810 | 0.814585 | 1.429524e-51 | -8.615850e-47 |
| Msa0239510 | Msa0908050 | 0.812368 | 4.391686e-51 | -8.615850e-47 |
| Msa0239510 | Msa0908170 | 0.846657 | 1.893236e-59 | -8.615850e-47 |
| Msa0239510 | Msa0933440 | 0.830116 | 3.519495e-55 | -8.615850e-47 |
| Msa0239510 | Msa0959010 | 0.819195 | 1.319222e-52 | -8.615850e-47 |
| Msa0239510 | Msa0993530 | 0.825164 | 5.441973e-54 | -8.615850e-47 |
| Msa0239510 | Msa1124310 | 0.822287 | 2.567746e-53 | -8.615850e-47 |
| Msa0239510 | Msa1130210 | -0.802188 | 6.316660e-49 | -8.615850e-47 |
| Msa0239510 | Msa1185540 | 0.822637 | 2.129420e-53 | -8.615850e-47 |
| Msa0239510 | Msa1249920 | 0.809476 | 1.856964e-50 | -8.615850e-47 |
| Msa0239510 | Msa1311960 | 0.811762 | 5.951445e-51 | -8.615850e-47 |
| Msa0239510 | Msa1337730 | 0.802107 | 6.564603e-49 | -8.615850e-47 |
| Msa0239510 | Msa1348360 | 0.807454 | 5.016193e-50 | -8.615850e-47 |
| Msa0239510 | Msa1362510 | 0.804671 | 1.931647e-49 | -8.615850e-47 |
| Msa0239510 | Msa1390230 | 0.804785 | 1.828279e-49 | -8.615850e-47 |
| Msa0239510 | Msa1404540 | 0.820892 | 5.393566e-53 | -8.615850e-47 |
| Msa0239510 | Msa1415940 | 0.800180 | 1.626661e-48 | -8.615850e-47 |
| Msa0239510 | Msa1431060 | 0.804587 | 2.011338e-49 | -8.615850e-47 |
| Msa0239510 | Msa1440600 | 0.807801 | 4.232767e-50 | -8.615850e-47 |
| Msa0239510 | Msa1466460 | 0.809128 | 2.205155e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239510 | MtrunA17_Chr2g0290651 | 96.918 | 584 | 15 | 1 | 1 | 581 | 1 | 584 | 0.0 | 1097 |
| Msa0239510 | MtrunA17_Chr4g0076431 | 59.194 | 571 | 208 | 7 | 11 | 578 | 2 | 550 | 0.0 | 555 |
| Msa0239510 | MtrunA17_Chr3g0102681 | 43.009 | 565 | 310 | 7 | 8 | 565 | 11 | 570 | 5.93e-106 | 332 |
| Msa0239510 | MtrunA17_Chr3g0078801 | 39.506 | 567 | 330 | 7 | 9 | 565 | 12 | 575 | 3.52e-89 | 289 |
| Msa0239510 | MtrunA17_Chr5g0446731 | 38.624 | 567 | 335 | 7 | 9 | 565 | 12 | 575 | 4.35e-89 | 288 |
| Msa0239510 | MtrunA17_Chr4g0075951 | 52.978 | 319 | 138 | 4 | 262 | 578 | 6 | 314 | 2.78e-78 | 250 |
| Msa0239510 | MtrunA17_Chr3g0133891 | 29.208 | 606 | 361 | 17 | 1 | 562 | 270 | 851 | 1.76e-29 | 124 |
| Msa0239510 | MtrunA17_Chr1g0153431 | 26.644 | 593 | 375 | 16 | 14 | 563 | 259 | 834 | 8.18e-24 | 106 |
| Msa0239510 | MtrunA17_Chr7g0244501 | 27.018 | 285 | 205 | 2 | 282 | 565 | 150 | 432 | 6.84e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239510 | AT1G12150.2 | 45.536 | 560 | 274 | 8 | 11 | 563 | 8 | 543 | 6.98e-128 | 386 |
| Msa0239510 | AT1G12150.1 | 45.536 | 560 | 274 | 8 | 11 | 563 | 8 | 543 | 6.98e-128 | 386 |
| Msa0239510 | AT5G55860.1 | 41.725 | 568 | 316 | 6 | 6 | 565 | 8 | 568 | 2.39e-85 | 279 |
| Msa0239510 | AT4G17210.1 | 34.220 | 564 | 312 | 7 | 10 | 563 | 12 | 526 | 2.37e-68 | 231 |
| Msa0239510 | AT2G26570.1 | 26.514 | 611 | 380 | 15 | 8 | 575 | 153 | 737 | 1.58e-27 | 118 |
| Msa0239510 | AT2G26570.2 | 26.514 | 611 | 380 | 15 | 8 | 575 | 153 | 737 | 1.58e-27 | 118 |
| Msa0239510 | AT4G33390.1 | 28.088 | 591 | 375 | 16 | 8 | 561 | 138 | 715 | 7.89e-24 | 106 |
| Msa0239510 | AT1G45545.1 | 24.830 | 588 | 354 | 18 | 8 | 562 | 142 | 674 | 1.16e-13 | 74.7 |
| Msa0239510 | AT1G45545.2 | 24.830 | 588 | 354 | 18 | 8 | 562 | 143 | 675 | 1.22e-13 | 74.7 |
| Msa0239510 | AT5G42880.1 | 25.251 | 598 | 362 | 18 | 6 | 565 | 115 | 665 | 1.96e-13 | 73.9 |
Find 95 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTCTTGATGCTTTCA+TGG | 0.211121 | 2_2:-13960213 | None:intergenic |
| AGCTAAAACTTGTCTGTTAA+AGG | 0.228348 | 2_2:-13961555 | None:intergenic |
| TCTTGTAGCATCAAACATTA+AGG | 0.277691 | 2_2:+13958899 | Msa0239510:five_prime_UTR |
| CAATTCTTGAAGTGTTATAT+TGG | 0.291401 | 2_2:-13959859 | None:intergenic |
| TCGAGACTTTGTGTTTCTTC+AGG | 0.293848 | 2_2:-13960371 | None:intergenic |
| TGAAACAAGTGCTGAAATTC+AGG | 0.294476 | 2_2:+13960406 | Msa0239510:CDS |
| CAATCTGTCAAGGCTGCTAT+TGG | 0.319700 | 2_2:+13959140 | Msa0239510:CDS |
| TTCTGTCGAGTTAATAACTT+TGG | 0.330943 | 2_2:+13960472 | Msa0239510:CDS |
| TGCCGCTTTGGAGGCGAAAT+TGG | 0.336907 | 2_2:+13960106 | Msa0239510:CDS |
| GACAAACTTTCATATTGAAC+TGG | 0.338022 | 2_2:-13961466 | None:intergenic |
| TTGGAGAACTATCTCTGTTT+CGG | 0.342248 | 2_2:-13959064 | None:intergenic |
| TTGGTGAAGTTCGTGTCAAC+CGG | 0.365739 | 2_2:+13959168 | Msa0239510:CDS |
| AAGGCTGCTATTGGTTTGTT+TGG | 0.369565 | 2_2:+13959149 | Msa0239510:CDS |
| CAAAGAAAAGGAAGATTCTA+TGG | 0.384617 | 2_2:+13960676 | Msa0239510:CDS |
| ACCGGAGAATCTGTCTCCTT+TGG | 0.398317 | 2_2:-13959083 | None:intergenic |
| CAAAGAAAATTCTCATCAAA+AGG | 0.404835 | 2_2:+13958872 | Msa0239510:five_prime_UTR |
| TATTTCTTCAGACAAAGCTT+TGG | 0.407479 | 2_2:-13960840 | None:intergenic |
| TGAGAGTCATTGTCAAGAAA+TGG | 0.411564 | 2_2:+13960715 | Msa0239510:CDS |
| GAAAGAACAAGAGGAACTTA+AGG | 0.412694 | 2_2:+13960595 | Msa0239510:CDS |
| TTCTAGCTCTGCAGCGAGAT+TGG | 0.424207 | 2_2:-13961295 | None:intergenic |
| GAAACACCTTAAAATATTGT+TGG | 0.429210 | 2_2:-13958756 | None:intergenic |
| CAGCAACAGATCTGGCTTTG+AGG | 0.433288 | 2_2:+13961167 | Msa0239510:CDS |
| AGGAACCAAAGTTTACATCT+TGG | 0.434259 | 2_2:+13958826 | Msa0239510:five_prime_UTR |
| CATGCTCATTGTCAACATCT+TGG | 0.434871 | 2_2:+13961530 | Msa0239510:three_prime_UTR |
| TGGCGTCAAGAAGAACAAAA+AGG | 0.451952 | 2_2:+13961244 | Msa0239510:CDS |
| AAGAACCAAGATGTAAACTT+TGG | 0.460675 | 2_2:-13958831 | None:intergenic |
| AGAAATAGATAATAAATTGA+TGG | 0.464169 | 2_2:+13960328 | Msa0239510:CDS |
| AATAAAAGCAGCAACAGATC+TGG | 0.466708 | 2_2:+13961159 | Msa0239510:CDS |
| TGATAGAATTATTTCTATCC+CGG | 0.469818 | 2_2:-13959187 | None:intergenic |
| TACCTTGTAGTTCGCCGGTT+AGG | 0.471965 | 2_2:-13960652 | None:intergenic |
| AGAGATGAGAATGAAAGCTC+AGG | 0.473161 | 2_2:+13960793 | Msa0239510:CDS |
| GTGTGATATGCAGAATGTAT+TGG | 0.475004 | 2_2:+13959728 | Msa0239510:intron |
| AAAGGAGACTCAGCTTCTCT+TGG | 0.484746 | 2_2:+13959752 | Msa0239510:CDS |
| TATGCAGAATGTATTGGAAA+AGG | 0.485982 | 2_2:+13959734 | Msa0239510:intron |
| GGCAGGAGAAGCTCAGCGTT+CGG | 0.487792 | 2_2:+13960142 | Msa0239510:CDS |
| GCTCTTGCTGCAAACCTAAC+CGG | 0.490559 | 2_2:+13960638 | Msa0239510:CDS |
| AAGCGATAGGGTATGAAGCT+TGG | 0.500293 | 2_2:+13959985 | Msa0239510:CDS |
| AGAACTAGAACATGCAAGAA+AGG | 0.501099 | 2_2:+13960013 | Msa0239510:CDS |
| AGATTCTCCGGTGGGAGAGA+GGG | 0.502913 | 2_2:+13959094 | Msa0239510:CDS |
| AGCGCTTATCGAGCTTGATA+AGG | 0.503328 | 2_2:+13959836 | Msa0239510:CDS |
| TCATATTGAACTGGGAGAGT+TGG | 0.507578 | 2_2:-13961457 | None:intergenic |
| TTGGCTGCATTTCAGATGGC+AGG | 0.508839 | 2_2:+13960125 | Msa0239510:CDS |
| AATCACTTTGGCTGTAGCGT+TGG | 0.509542 | 2_2:+13961373 | Msa0239510:three_prime_UTR |
| TAAGTCTTTCAAGCTCAGAA+TGG | 0.509794 | 2_2:+13961322 | Msa0239510:three_prime_UTR |
| TCAGCAAAACTAGCAGTTGA+AGG | 0.511221 | 2_2:+13961208 | Msa0239510:CDS |
| ACTACAAGGTAGCAAAGAAA+AGG | 0.511736 | 2_2:+13960664 | Msa0239510:CDS |
| GAATGGATTGAGTGAAGTCT+CGG | 0.518504 | 2_2:+13961339 | Msa0239510:three_prime_UTR |
| TCCAAAGGAGACAGATTCTC+CGG | 0.522645 | 2_2:+13959082 | Msa0239510:CDS |
| TTTGCTACCTTGTAGTTCGC+CGG | 0.522771 | 2_2:-13960657 | None:intergenic |
| AGAAACAACTGCAATGGCTC+AGG | 0.523434 | 2_2:+13961066 | Msa0239510:CDS |
| GATGAATTTGCTGCTCTAAG+TGG | 0.529272 | 2_2:+13961007 | Msa0239510:CDS |
| CAGATTCTCCGGTGGGAGAG+AGG | 0.533950 | 2_2:+13959093 | Msa0239510:CDS |
| AAAGATCAATGAACTTTCAA+AGG | 0.534366 | 2_2:+13960181 | Msa0239510:CDS |
| GGCTTTGAGGAATGCAGAGA+TGG | 0.535386 | 2_2:+13961180 | Msa0239510:CDS |
| AGAAGAACAGATTAAAGCGA+TGG | 0.537448 | 2_2:+13960262 | Msa0239510:CDS |
| TCAAGCCAAAGAACTCGAAA+AGG | 0.537588 | 2_2:+13959950 | Msa0239510:CDS |
| GCTTTGTCTGAAGAAATAGA+AGG | 0.539516 | 2_2:+13960845 | Msa0239510:CDS |
| GCAGCCTTGACAGATTGAAA+TGG | 0.548681 | 2_2:-13959134 | None:intergenic |
| AACAACTGCAATGGCTCAGG+TGG | 0.549356 | 2_2:+13961069 | Msa0239510:CDS |
| ACAAGTGAAGAAAGAACAAG+AGG | 0.551605 | 2_2:+13960586 | Msa0239510:CDS |
| GCGCTATCACAGAAAGCGAT+AGG | 0.554886 | 2_2:+13959972 | Msa0239510:CDS |
| CGCTATCACAGAAAGCGATA+GGG | 0.555926 | 2_2:+13959973 | Msa0239510:CDS |
| GGTCCATCACAAAATCACTT+TGG | 0.556573 | 2_2:+13961361 | Msa0239510:three_prime_UTR |
| TGTTAATACGATCTTACCAC+TGG | 0.561538 | 2_2:-13960981 | None:intergenic |
| GAAATTGGCTGCATTTCAGA+TGG | 0.565691 | 2_2:+13960121 | Msa0239510:CDS |
| TCAATCTCCCTCTCTCCCAC+CGG | 0.566121 | 2_2:-13959101 | None:intergenic |
| AGAATCAAAGCAATCTGCAA+TGG | 0.566703 | 2_2:+13959905 | Msa0239510:CDS |
| GAAGAACAGATTAAAGCGAT+GGG | 0.567926 | 2_2:+13960263 | Msa0239510:CDS |
| AGCTTCACTGAGAAACCTTG+TGG | 0.568186 | 2_2:+13960541 | Msa0239510:CDS |
| CTTACCACTGGAATCAGAAA+CGG | 0.572360 | 2_2:-13960969 | None:intergenic |
| AACCTAACCGGCGAACTACA+AGG | 0.573065 | 2_2:+13960650 | Msa0239510:CDS |
| TGGTGAAGTTCGTGTCAACC+GGG | 0.573487 | 2_2:+13959169 | Msa0239510:CDS |
| ACAAGAGGAACTTAAGGAGA+AGG | 0.576875 | 2_2:+13960601 | Msa0239510:CDS |
| CTGTCTTAAGCGAATCCACA+AGG | 0.577030 | 2_2:-13960556 | None:intergenic |
| ACAAACTTTCATATTGAACT+GGG | 0.599851 | 2_2:-13961465 | None:intergenic |
| AATGTGAAGATTTGATTGAG+AGG | 0.600637 | 2_2:+13961041 | Msa0239510:CDS |
| AATGGATTGAGTGAAGTCTC+GGG | 0.603563 | 2_2:+13961340 | Msa0239510:three_prime_UTR |
| TCTTTATCTTGAGAGTTGAG+AGG | 0.603983 | 2_2:+13961404 | Msa0239510:three_prime_UTR |
| ATCTGCAATGGAAGAAAGTG+AGG | 0.605339 | 2_2:+13959917 | Msa0239510:CDS |
| AAATAAAAGTTAGACTTGCA+AGG | 0.613854 | 2_2:+13958806 | Msa0239510:five_prime_UTR |
| AGCACCATTTCAATCTGTCA+AGG | 0.619152 | 2_2:+13959130 | Msa0239510:CDS |
| CAAGCAGTTATCATTCGAGA+CGG | 0.628969 | 2_2:+13960748 | Msa0239510:CDS |
| GCGTTCGGCGAAATTGAACT+CGG | 0.630622 | 2_2:+13960157 | Msa0239510:CDS |
| AAGGAGACAGATTCTCCGGT+GGG | 0.630732 | 2_2:+13959086 | Msa0239510:CDS |
| TATCAAGAGAAGATCTTCAG+AGG | 0.632667 | 2_2:+13959205 | Msa0239510:CDS |
| AAACAGAGATAGTTCTCCAA+AGG | 0.633433 | 2_2:+13959067 | Msa0239510:CDS |
| GAGGACAGAAACAACTGCAA+TGG | 0.637220 | 2_2:+13961060 | Msa0239510:CDS |
| GTCTCCGTTTCTGATTCCAG+TGG | 0.639257 | 2_2:+13960965 | Msa0239510:CDS |
| TTGAAGGTGAATTAAAGAAG+TGG | 0.644395 | 2_2:+13961224 | Msa0239510:CDS |
| TAAGGAGAAGGAACAAGCAG+CGG | 0.645739 | 2_2:+13960613 | Msa0239510:CDS |
| AGCCAATTTCGCCTCCAAAG+CGG | 0.663081 | 2_2:-13960108 | None:intergenic |
| AAAGGAGACAGATTCTCCGG+TGG | 0.663875 | 2_2:+13959085 | Msa0239510:CDS |
| CACATCTGCACAATGTTGTG+TGG | 0.666126 | 2_2:-13961501 | None:intergenic |
| TGAAGAAACACAAAGTCTCG+AGG | 0.675914 | 2_2:+13960373 | Msa0239510:CDS |
| AAGTTGTTGTCTGACGCACA+AGG | 0.705883 | 2_2:+13960938 | Msa0239510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGATTATATACTATTTTT+AGG | - | chr2_2:13958710-13958729 | None:intergenic | 10.0% |
| !! | TTATAAAATATTATGTAACA+CGG | + | chr2_2:13958964-13958983 | Msa0239510:intron | 10.0% |
| !!! | ATTTAACCAACAATATTTTA+AGG | + | chr2_2:13958750-13958769 | Msa0239510:five_prime_UTR | 15.0% |
| !! | AGAAATAGATAATAAATTGA+TGG | + | chr2_2:13960328-13960347 | Msa0239510:CDS | 15.0% |
| !! | ATTTGTAATATTAAGGATAG+CGG | - | chr2_2:13959243-13959262 | None:intergenic | 20.0% |
| !! | CATGGTTATTTGTAATATTA+AGG | - | chr2_2:13959250-13959269 | None:intergenic | 20.0% |
| !! | CTTAATATTACAAATAACCA+TGG | + | chr2_2:13959248-13959267 | Msa0239510:intron | 20.0% |
| !!! | AAACTTTTACAAAACTTCAA+AGG | + | chr2_2:13960304-13960323 | Msa0239510:CDS | 20.0% |
| !!! | ACTATTTTTAGGTTGAGAAA+TGG | - | chr2_2:13958699-13958718 | None:intergenic | 25.0% |
| ! | GAAACACCTTAAAATATTGT+TGG | - | chr2_2:13958759-13958778 | None:intergenic | 25.0% |
| ! | AAATAAAAGTTAGACTTGCA+AGG | + | chr2_2:13958806-13958825 | Msa0239510:five_prime_UTR | 25.0% |
| !! | TGATGAGAATTTTCTTTGAA+AGG | - | chr2_2:13958870-13958889 | None:intergenic | 25.0% |
| ! | CAAAGAAAATTCTCATCAAA+AGG | + | chr2_2:13958872-13958891 | Msa0239510:five_prime_UTR | 25.0% |
| ! | ATTGCATAACATGTTACATA+TGG | - | chr2_2:13958945-13958964 | None:intergenic | 25.0% |
| !!! | TGATAGAATTATTTCTATCC+CGG | - | chr2_2:13959190-13959209 | None:intergenic | 25.0% |
| ! | TTATTCGCAAAATTTAACCA+TGG | - | chr2_2:13959268-13959287 | None:intergenic | 25.0% |
| !! | AATAGCAGTTTGTTCAAATT+CGG | + | chr2_2:13959488-13959507 | Msa0239510:intron | 25.0% |
| ! | TGTGCTTCTTGTATTAAAAT+TGG | - | chr2_2:13959596-13959615 | None:intergenic | 25.0% |
| !! | CAATTCTTGAAGTGTTATAT+TGG | - | chr2_2:13959862-13959881 | None:intergenic | 25.0% |
| !! | TATTTTGTTAAGTTCTTGCT+TGG | - | chr2_2:13960072-13960091 | None:intergenic | 25.0% |
| ! | AAAGATCAATGAACTTTCAA+AGG | + | chr2_2:13960181-13960200 | Msa0239510:CDS | 25.0% |
| ! | ACAAACTTTCATATTGAACT+GGG | - | chr2_2:13961468-13961487 | None:intergenic | 25.0% |
| ! | TTTTTAACAACACTTGAGGT+TGG | + | chr2_2:13958641-13958660 | Msa0239510:five_prime_UTR | 30.0% |
| AAGAACCAAGATGTAAACTT+TGG | - | chr2_2:13958834-13958853 | None:intergenic | 30.0% | |
| !! | GAATTTTCTTTGAAAGGTGT+TGG | - | chr2_2:13958864-13958883 | None:intergenic | 30.0% |
| TCTTGTAGCATCAAACATTA+AGG | + | chr2_2:13958899-13958918 | Msa0239510:five_prime_UTR | 30.0% | |
| TACAATATAGCACTATAGCA+TGG | - | chr2_2:13959514-13959533 | None:intergenic | 30.0% | |
| !!! | TTTTCAAGTTTGCGTGATTT+TGG | + | chr2_2:13959631-13959650 | Msa0239510:intron | 30.0% |
| TATTTATGAGTTATGCGTCA+AGG | + | chr2_2:13959694-13959713 | Msa0239510:intron | 30.0% | |
| TATGCAGAATGTATTGGAAA+AGG | + | chr2_2:13959734-13959753 | Msa0239510:intron | 30.0% | |
| !!! | ATCTAGTTCTTTTACAGTTG+TGG | - | chr2_2:13960045-13960064 | None:intergenic | 30.0% |
| TTCTGTCGAGTTAATAACTT+TGG | + | chr2_2:13960472-13960491 | Msa0239510:CDS | 30.0% | |
| CAAAGAAAAGGAAGATTCTA+TGG | + | chr2_2:13960676-13960695 | Msa0239510:CDS | 30.0% | |
| TATTTCTTCAGACAAAGCTT+TGG | - | chr2_2:13960843-13960862 | None:intergenic | 30.0% | |
| AATGTGAAGATTTGATTGAG+AGG | + | chr2_2:13961041-13961060 | Msa0239510:CDS | 30.0% | |
| TTGAAGGTGAATTAAAGAAG+TGG | + | chr2_2:13961224-13961243 | Msa0239510:CDS | 30.0% | |
| TCAAGAAGAACAAAAAGGTT+TGG | + | chr2_2:13961249-13961268 | Msa0239510:CDS | 30.0% | |
| ACAAAAAGGTTTGGATTTGT+CGG | + | chr2_2:13961258-13961277 | Msa0239510:CDS | 30.0% | |
| GACAAACTTTCATATTGAAC+TGG | - | chr2_2:13961469-13961488 | None:intergenic | 30.0% | |
| AGCTAAAACTTGTCTGTTAA+AGG | - | chr2_2:13961558-13961577 | None:intergenic | 30.0% | |
| ! | GCTTTTACATCTCAATATGT+TGG | - | chr2_2:13961607-13961626 | None:intergenic | 30.0% |
| !! | AAATGGATAGAGTTTTGTGG+TGG | - | chr2_2:13958682-13958701 | None:intergenic | 35.0% |
| ! | GAGAAATGGATAGAGTTTTG+TGG | - | chr2_2:13958685-13958704 | None:intergenic | 35.0% |
| !!! | GGTGTTTCCTTGTTTTTCAA+CGG | + | chr2_2:13958771-13958790 | Msa0239510:five_prime_UTR | 35.0% |
| ! | TTTGAGACCGTTGAAAAACA+AGG | - | chr2_2:13958781-13958800 | None:intergenic | 35.0% |
| AGGAACCAAAGTTTACATCT+TGG | + | chr2_2:13958826-13958845 | Msa0239510:five_prime_UTR | 35.0% | |
| TTGGAGAACTATCTCTGTTT+CGG | - | chr2_2:13959067-13959086 | None:intergenic | 35.0% | |
| AAACAGAGATAGTTCTCCAA+AGG | + | chr2_2:13959067-13959086 | Msa0239510:CDS | 35.0% | |
| TATCAAGAGAAGATCTTCAG+AGG | + | chr2_2:13959205-13959224 | Msa0239510:CDS | 35.0% | |
| ATCTTCAGAGGTAAACATCA+CGG | + | chr2_2:13959217-13959236 | Msa0239510:intron | 35.0% | |
| ! | TTTTGACGTCTATGCGATTA+AGG | - | chr2_2:13959307-13959326 | None:intergenic | 35.0% |
| GTGTGATATGCAGAATGTAT+TGG | + | chr2_2:13959728-13959747 | Msa0239510:intron | 35.0% | |
| AGAATCAAAGCAATCTGCAA+TGG | + | chr2_2:13959905-13959924 | Msa0239510:CDS | 35.0% | |
| AGAACTAGAACATGCAAGAA+AGG | + | chr2_2:13960013-13960032 | Msa0239510:CDS | 35.0% | |
| TTCTTCTCTTGATGCTTTCA+TGG | - | chr2_2:13960216-13960235 | None:intergenic | 35.0% | |
| AGAAGAACAGATTAAAGCGA+TGG | + | chr2_2:13960262-13960281 | Msa0239510:CDS | 35.0% | |
| GAAGAACAGATTAAAGCGAT+GGG | + | chr2_2:13960263-13960282 | Msa0239510:CDS | 35.0% | |
| !! | TGAAACAAGTGCTGAAATTC+AGG | + | chr2_2:13960406-13960425 | Msa0239510:CDS | 35.0% |
| ACAAGTGAAGAAAGAACAAG+AGG | + | chr2_2:13960586-13960605 | Msa0239510:CDS | 35.0% | |
| GAAAGAACAAGAGGAACTTA+AGG | + | chr2_2:13960595-13960614 | Msa0239510:CDS | 35.0% | |
| ACTACAAGGTAGCAAAGAAA+AGG | + | chr2_2:13960664-13960683 | Msa0239510:CDS | 35.0% | |
| TGAGAGTCATTGTCAAGAAA+TGG | + | chr2_2:13960715-13960734 | Msa0239510:CDS | 35.0% | |
| GCTTTGTCTGAAGAAATAGA+AGG | + | chr2_2:13960845-13960864 | Msa0239510:CDS | 35.0% | |
| AGATGAAAAAAGAGCTGTTG+AGG | + | chr2_2:13960910-13960929 | Msa0239510:CDS | 35.0% | |
| TGTTAATACGATCTTACCAC+TGG | - | chr2_2:13960984-13961003 | None:intergenic | 35.0% | |
| AATAAAAGCAGCAACAGATC+TGG | + | chr2_2:13961159-13961178 | Msa0239510:CDS | 35.0% | |
| TAAGTCTTTCAAGCTCAGAA+TGG | + | chr2_2:13961322-13961341 | Msa0239510:three_prime_UTR | 35.0% | |
| TCTTTATCTTGAGAGTTGAG+AGG | + | chr2_2:13961404-13961423 | Msa0239510:three_prime_UTR | 35.0% | |
| AGCACCATTTCAATCTGTCA+AGG | + | chr2_2:13959130-13959149 | Msa0239510:CDS | 40.0% | |
| !! | AAGGCTGCTATTGGTTTGTT+TGG | + | chr2_2:13959149-13959168 | Msa0239510:CDS | 40.0% |
| GAAGCAGGGTTATGACAAAA+TGG | - | chr2_2:13959371-13959390 | None:intergenic | 40.0% | |
| AGCATTCAATCTTCGAAGCA+GGG | - | chr2_2:13959385-13959404 | None:intergenic | 40.0% | |
| AAGCATTCAATCTTCGAAGC+AGG | - | chr2_2:13959386-13959405 | None:intergenic | 40.0% | |
| TGCTTCGAAGATTGAATGCT+TGG | + | chr2_2:13959385-13959404 | Msa0239510:intron | 40.0% | |
| ATCTGCAATGGAAGAAAGTG+AGG | + | chr2_2:13959917-13959936 | Msa0239510:CDS | 40.0% | |
| TCAAGCCAAAGAACTCGAAA+AGG | + | chr2_2:13959950-13959969 | Msa0239510:CDS | 40.0% | |
| !! | ACAAGATTTTGATGCCGCTT+TGG | + | chr2_2:13960094-13960113 | Msa0239510:CDS | 40.0% |
| GAAATTGGCTGCATTTCAGA+TGG | + | chr2_2:13960121-13960140 | Msa0239510:CDS | 40.0% | |
| TCGAGACTTTGTGTTTCTTC+AGG | - | chr2_2:13960374-13960393 | None:intergenic | 40.0% | |
| TGAAGAAACACAAAGTCTCG+AGG | + | chr2_2:13960373-13960392 | Msa0239510:CDS | 40.0% | |
| ACAAGAGGAACTTAAGGAGA+AGG | + | chr2_2:13960601-13960620 | Msa0239510:CDS | 40.0% | |
| CAAGCAGTTATCATTCGAGA+CGG | + | chr2_2:13960748-13960767 | Msa0239510:CDS | 40.0% | |
| AGAGATGAGAATGAAAGCTC+AGG | + | chr2_2:13960793-13960812 | Msa0239510:CDS | 40.0% | |
| CTTACCACTGGAATCAGAAA+CGG | - | chr2_2:13960972-13960991 | None:intergenic | 40.0% | |
| !! | GATGAATTTGCTGCTCTAAG+TGG | + | chr2_2:13961007-13961026 | Msa0239510:CDS | 40.0% |
| TCAGCAAAACTAGCAGTTGA+AGG | + | chr2_2:13961208-13961227 | Msa0239510:CDS | 40.0% | |
| TGGCGTCAAGAAGAACAAAA+AGG | + | chr2_2:13961244-13961263 | Msa0239510:CDS | 40.0% | |
| !! | GAATGGATTGAGTGAAGTCT+CGG | + | chr2_2:13961339-13961358 | Msa0239510:three_prime_UTR | 40.0% |
| !! | AATGGATTGAGTGAAGTCTC+GGG | + | chr2_2:13961340-13961359 | Msa0239510:three_prime_UTR | 40.0% |
| GGTCCATCACAAAATCACTT+TGG | + | chr2_2:13961361-13961380 | Msa0239510:three_prime_UTR | 40.0% | |
| ! | CAGCCAAAGTGATTTTGTGA+TGG | - | chr2_2:13961367-13961386 | None:intergenic | 40.0% |
| TCATATTGAACTGGGAGAGT+TGG | - | chr2_2:13961460-13961479 | None:intergenic | 40.0% | |
| CATGCTCATTGTCAACATCT+TGG | + | chr2_2:13961530-13961549 | Msa0239510:three_prime_UTR | 40.0% | |
| TCCAAAGGAGACAGATTCTC+CGG | + | chr2_2:13959082-13959101 | Msa0239510:CDS | 45.0% | |
| GCAGCCTTGACAGATTGAAA+TGG | - | chr2_2:13959137-13959156 | None:intergenic | 45.0% | |
| CAATCTGTCAAGGCTGCTAT+TGG | + | chr2_2:13959140-13959159 | Msa0239510:CDS | 45.0% | |
| TTGGTGAAGTTCGTGTCAAC+CGG | + | chr2_2:13959168-13959187 | Msa0239510:CDS | 45.0% | |
| CGTCAAAAACCTTGATGTCG+CGG | + | chr2_2:13959319-13959338 | Msa0239510:intron | 45.0% | |
| !! | CAGTTTTAACCGCGACATCA+AGG | - | chr2_2:13959331-13959350 | None:intergenic | 45.0% |
| GATTGAATGCTTGGTCCCAA+AGG | + | chr2_2:13959394-13959413 | Msa0239510:intron | 45.0% | |
| AAAGGAGACTCAGCTTCTCT+TGG | + | chr2_2:13959752-13959771 | Msa0239510:CDS | 45.0% | |
| AGCGCTTATCGAGCTTGATA+AGG | + | chr2_2:13959836-13959855 | Msa0239510:CDS | 45.0% | |
| !!! | TAGCGCCTTTTCGAGTTCTT+TGG | - | chr2_2:13959958-13959977 | None:intergenic | 45.0% |
| CGCTATCACAGAAAGCGATA+GGG | + | chr2_2:13959973-13959992 | Msa0239510:CDS | 45.0% | |
| AAGCGATAGGGTATGAAGCT+TGG | + | chr2_2:13959985-13960004 | Msa0239510:CDS | 45.0% | |
| !!! | AGATTTTGATGCCGCTTTGG+AGG | + | chr2_2:13960097-13960116 | Msa0239510:CDS | 45.0% |
| AGCTTCACTGAGAAACCTTG+TGG | + | chr2_2:13960541-13960560 | Msa0239510:CDS | 45.0% | |
| CTGTCTTAAGCGAATCCACA+AGG | - | chr2_2:13960559-13960578 | None:intergenic | 45.0% | |
| TAAGGAGAAGGAACAAGCAG+CGG | + | chr2_2:13960613-13960632 | Msa0239510:CDS | 45.0% | |
| TTTGCTACCTTGTAGTTCGC+CGG | - | chr2_2:13960660-13960679 | None:intergenic | 45.0% | |
| AAGTTGTTGTCTGACGCACA+AGG | + | chr2_2:13960938-13960957 | Msa0239510:CDS | 45.0% | |
| GAGGACAGAAACAACTGCAA+TGG | + | chr2_2:13961060-13961079 | Msa0239510:CDS | 45.0% | |
| AGAAACAACTGCAATGGCTC+AGG | + | chr2_2:13961066-13961085 | Msa0239510:CDS | 45.0% | |
| AATCACTTTGGCTGTAGCGT+TGG | + | chr2_2:13961373-13961392 | Msa0239510:three_prime_UTR | 45.0% | |
| CACATCTGCACAATGTTGTG+TGG | - | chr2_2:13961504-13961523 | None:intergenic | 45.0% | |
| ACCGGAGAATCTGTCTCCTT+TGG | - | chr2_2:13959086-13959105 | None:intergenic | 50.0% | |
| AAAGGAGACAGATTCTCCGG+TGG | + | chr2_2:13959085-13959104 | Msa0239510:CDS | 50.0% | |
| AAGGAGACAGATTCTCCGGT+GGG | + | chr2_2:13959086-13959105 | Msa0239510:CDS | 50.0% | |
| TGGTGAAGTTCGTGTCAACC+GGG | + | chr2_2:13959169-13959188 | Msa0239510:CDS | 50.0% | |
| CGACTAACTAGCTACCAGCT+GGG | - | chr2_2:13959425-13959444 | None:intergenic | 50.0% | |
| GCGCTATCACAGAAAGCGAT+AGG | + | chr2_2:13959972-13959991 | Msa0239510:CDS | 50.0% | |
| AGCCAATTTCGCCTCCAAAG+CGG | - | chr2_2:13960111-13960130 | None:intergenic | 50.0% | |
| TTGGCTGCATTTCAGATGGC+AGG | + | chr2_2:13960125-13960144 | Msa0239510:CDS | 50.0% | |
| GCGTTCGGCGAAATTGAACT+CGG | + | chr2_2:13960157-13960176 | Msa0239510:CDS | 50.0% | |
| GCTCTTGCTGCAAACCTAAC+CGG | + | chr2_2:13960638-13960657 | Msa0239510:CDS | 50.0% | |
| AACCTAACCGGCGAACTACA+AGG | + | chr2_2:13960650-13960669 | Msa0239510:CDS | 50.0% | |
| ! | TACCTTGTAGTTCGCCGGTT+AGG | - | chr2_2:13960655-13960674 | None:intergenic | 50.0% |
| GTCTCCGTTTCTGATTCCAG+TGG | + | chr2_2:13960965-13960984 | Msa0239510:CDS | 50.0% | |
| AACAACTGCAATGGCTCAGG+TGG | + | chr2_2:13961069-13961088 | Msa0239510:CDS | 50.0% | |
| !! | CAGCAACAGATCTGGCTTTG+AGG | + | chr2_2:13961167-13961186 | Msa0239510:CDS | 50.0% |
| !! | GGCTTTGAGGAATGCAGAGA+TGG | + | chr2_2:13961180-13961199 | Msa0239510:CDS | 50.0% |
| !! | TTCTAGCTCTGCAGCGAGAT+TGG | - | chr2_2:13961298-13961317 | None:intergenic | 50.0% |
| AGATTCTCCGGTGGGAGAGA+GGG | + | chr2_2:13959094-13959113 | Msa0239510:CDS | 55.0% | |
| TCAATCTCCCTCTCTCCCAC+CGG | - | chr2_2:13959104-13959123 | None:intergenic | 55.0% | |
| ACCAGCTGGGTCATGCCTTT+GGG | - | chr2_2:13959412-13959431 | None:intergenic | 55.0% | |
| TACCAGCTGGGTCATGCCTT+TGG | - | chr2_2:13959413-13959432 | None:intergenic | 55.0% | |
| GCGACTAACTAGCTACCAGC+TGG | - | chr2_2:13959426-13959445 | None:intergenic | 55.0% | |
| !! | TGCCGCTTTGGAGGCGAAAT+TGG | + | chr2_2:13960106-13960125 | Msa0239510:CDS | 55.0% |
| CAGATTCTCCGGTGGGAGAG+AGG | + | chr2_2:13959093-13959112 | Msa0239510:CDS | 60.0% | |
| ! | TCCCAAAGGCATGACCCAGC+TGG | + | chr2_2:13959408-13959427 | Msa0239510:intron | 60.0% |
| GGCAGGAGAAGCTCAGCGTT+CGG | + | chr2_2:13960142-13960161 | Msa0239510:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 13958639 | 13961668 | 13958639 | ID=Msa0239510;Name=Msa0239510 |
| chr2_2 | mRNA | 13958639 | 13961668 | 13958639 | ID=Msa0239510-mRNA-1;Parent=Msa0239510;Name=Msa0239510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=314|1|1|1|0.5|0.33|3|353|581 |
| chr2_2 | exon | 13958639 | 13958920 | 13958639 | ID=Msa0239510-mRNA-1:exon:5764;Parent=Msa0239510-mRNA-1 |
| chr2_2 | exon | 13959024 | 13959226 | 13959024 | ID=Msa0239510-mRNA-1:exon:5765;Parent=Msa0239510-mRNA-1 |
| chr2_2 | exon | 13959741 | 13961668 | 13959741 | ID=Msa0239510-mRNA-1:exon:5766;Parent=Msa0239510-mRNA-1 |
| chr2_2 | five_prime_UTR | 13958639 | 13958920 | 13958639 | ID=Msa0239510-mRNA-1:five_prime_utr;Parent=Msa0239510-mRNA-1 |
| chr2_2 | five_prime_UTR | 13959024 | 13959055 | 13959024 | ID=Msa0239510-mRNA-1:five_prime_utr;Parent=Msa0239510-mRNA-1 |
| chr2_2 | CDS | 13959056 | 13959226 | 13959056 | ID=Msa0239510-mRNA-1:cds;Parent=Msa0239510-mRNA-1 |
| chr2_2 | CDS | 13959741 | 13961315 | 13959741 | ID=Msa0239510-mRNA-1:cds;Parent=Msa0239510-mRNA-1 |
| chr2_2 | three_prime_UTR | 13961316 | 13961668 | 13961316 | ID=Msa0239510-mRNA-1:three_prime_utr;Parent=Msa0239510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
