AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0933440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933440 MtrunA17_Chr6g0449931 93.697 476 30 0 1 476 1 476 0.0 923
Msa0933440 MtrunA17_Chr6g0449991 88.201 339 22 1 1 339 1 321 0.0 584
Msa0933440 MtrunA17_Chr7g0232391 53.165 474 214 5 1 471 1 469 6.75e-169 484
Msa0933440 MtrunA17_Chr7g0232411 51.266 474 223 5 1 471 1 469 9.48e-166 476
Msa0933440 MtrunA17_Chr7g0232401 50.000 480 226 5 1 473 1 473 1.68e-163 470
Msa0933440 MtrunA17_Chr7g0232341 49.476 477 228 6 1 471 1 470 4.11e-161 464
Msa0933440 MtrunA17_Chr7g0232331 48.842 475 234 6 1 471 1 470 2.20e-158 457
Msa0933440 MtrunA17_Chr1g0153451 49.578 474 227 5 1 470 1 466 1.61e-157 455
Msa0933440 MtrunA17_Chr8g0336741 49.467 469 230 4 4 470 11 474 7.00e-156 451
Msa0933440 MtrunA17_Chr8g0347281 50.323 465 222 5 7 470 19 475 1.08e-154 448
Msa0933440 MtrunA17_Chr8g0336651 52.026 469 218 5 6 470 781 1246 1.70e-154 471
Msa0933440 MtrunA17_Chr8g0336651 49.683 473 231 4 1 471 1 468 8.83e-148 453
Msa0933440 MtrunA17_Chr8g0336651 52.817 284 98 3 189 470 528 777 2.89e-88 293
Msa0933440 MtrunA17_Chr8g0334851 48.326 478 235 6 1 471 1 473 3.38e-154 447
Msa0933440 MtrunA17_Chr8g0334861 49.895 475 224 11 1 470 1 466 3.02e-151 439
Msa0933440 MtrunA17_Chr8g0336691 50.212 472 230 4 1 470 8 476 1.05e-149 461
Msa0933440 MtrunA17_Chr8g0336691 50.321 467 227 4 6 470 919 1382 1.44e-148 458
Msa0933440 MtrunA17_Chr8g0336691 48.394 467 208 5 6 470 480 915 9.23e-139 432
Msa0933440 MtrunA17_Chr8g0347271 49.032 465 228 5 7 470 20 476 1.02e-148 433
Msa0933440 MtrunA17_Chr8g0336731 47.974 469 236 5 6 471 31 494 1.37e-148 433
Msa0933440 MtrunA17_Chr8g0373301 46.835 474 238 9 2 469 3 468 2.93e-147 429
Msa0933440 MtrunA17_Chr7g0232311 48.408 471 237 4 1 470 1 466 2.02e-144 421
Msa0933440 MtrunA17_Chr7g0275511 46.220 463 244 5 7 467 16 475 8.89e-143 418
Msa0933440 MtrunA17_Chr8g0339631 48.117 478 233 8 1 470 1 471 3.69e-142 416
Msa0933440 MtrunA17_Chr6g0459311 46.398 472 242 8 1 468 8 472 1.53e-141 414
Msa0933440 MtrunA17_Chr8g0339451 47.312 465 235 7 9 466 1 462 1.02e-136 402
Msa0933440 MtrunA17_Chr8g0339461 46.331 477 246 7 1 470 1 474 4.39e-136 400
Msa0933440 MtrunA17_Chr6g0486251 44.915 472 249 7 1 468 1 465 6.01e-136 400
Msa0933440 MtrunA17_Chr6g0486201 44.915 472 249 7 1 468 1 465 6.01e-136 400
Msa0933440 MtrunA17_Chr8g0361371 44.538 476 248 8 2 468 3 471 2.00e-133 394
Msa0933440 MtrunA17_Chr8g0335161 45.912 477 235 12 1 466 1 465 5.58e-131 387
Msa0933440 MtrunA17_Chr8g0334831 44.330 485 247 10 1 468 1 479 1.79e-130 387
Msa0933440 MtrunA17_Chr8g0335141 45.493 477 244 10 1 470 4 471 5.68e-127 377
Msa0933440 MtrunA17_Chr8g0339441 43.710 469 208 9 1 460 1 422 1.10e-121 362
Msa0933440 MtrunA17_Chr7g0232351 49.347 383 187 5 1 381 1 378 1.23e-118 352
Msa0933440 MtrunA17_Chr8g0339601 49.848 329 161 4 142 466 1 329 1.41e-101 307
Msa0933440 MtrunA17_Chr8g0370941 40.206 485 259 12 5 464 7 485 8.53e-97 301
Msa0933440 MtrunA17_Chr6g0462521 36.876 461 258 11 17 468 15 451 3.32e-81 259
Msa0933440 MtrunA17_Chr1g0153461 55.963 218 92 2 254 470 1 215 1.23e-80 249
Msa0933440 MtrunA17_Chr5g0403641 35.865 474 260 10 4 464 57 499 1.63e-80 259
Msa0933440 MtrunA17_Chr6g0462541 37.947 419 239 6 58 472 67 468 1.68e-80 258
Msa0933440 MtrunA17_Chr6g0462571 36.175 481 273 12 8 472 4 466 3.15e-80 257
Msa0933440 MtrunA17_Chr6g0462551 34.698 464 274 7 13 472 31 469 4.84e-79 254
Msa0933440 MtrunA17_Chr6g0462531 37.740 416 237 8 58 468 67 465 5.11e-77 248
Msa0933440 MtrunA17_Chr3g0079731 33.814 485 298 12 1 467 1 480 1.95e-72 237
Msa0933440 MtrunA17_Chr5g0442521 32.106 489 283 16 4 463 3 471 1.48e-61 208
Msa0933440 MtrunA17_Chr5g0442491 30.417 480 302 13 4 463 3 470 7.42e-60 203
Msa0933440 MtrunA17_Chr5g0429681 32.851 484 277 19 1 463 39 495 1.15e-59 204
Msa0933440 MtrunA17_Chr5g0442541 29.202 476 304 12 4 463 3 461 1.70e-58 199
Msa0933440 MtrunA17_Chr5g0429711 31.458 480 276 20 5 463 10 457 2.22e-58 199
Msa0933440 MtrunA17_Chr2g0302961 31.470 483 286 16 3 463 2 461 2.83e-58 199
Msa0933440 MtrunA17_Chr5g0442601 30.642 483 299 13 4 463 402 871 3.12e-58 206
Msa0933440 MtrunA17_Chr5g0442601 30.211 331 188 11 86 404 34 333 2.62e-30 125
Msa0933440 MtrunA17_Chr2g0302991 31.458 480 287 18 3 463 2 458 2.90e-56 194
Msa0933440 MtrunA17_Chr5g0426431 32.665 499 260 20 5 463 11 473 6.15e-56 193
Msa0933440 MtrunA17_Chr3g0092641 31.818 506 253 21 6 463 12 473 1.31e-55 192
Msa0933440 MtrunA17_Chr5g0442581 29.668 482 305 14 4 463 3 472 4.11e-55 192
Msa0933440 MtrunA17_Chr5g0448521 30.000 480 297 17 4 463 3 463 2.03e-54 189
Msa0933440 MtrunA17_Chr2g0278711 30.409 513 257 21 4 464 9 473 2.50e-54 189
Msa0933440 MtrunA17_Chr8g0337381 63.077 130 46 1 341 470 1 128 1.50e-53 176
Msa0933440 MtrunA17_Chr5g0442561 28.992 476 312 12 4 463 3 468 1.99e-53 186
Msa0933440 MtrunA17_Chr8g0366391 35.311 354 190 9 141 474 150 484 2.00e-53 187
Msa0933440 MtrunA17_Chr3g0118671 30.754 504 259 19 1 456 1 462 2.40e-53 186
Msa0933440 MtrunA17_Chr8g0369341 29.839 496 304 15 3 476 4 477 2.34e-52 183
Msa0933440 MtrunA17_Chr4g0050341 30.664 512 273 20 3 468 16 491 3.15e-52 184
Msa0933440 MtrunA17_Chr5g0426401 38.264 311 151 11 170 463 20 306 7.54e-51 175
Msa0933440 MtrunA17_Chr3g0118771 30.400 500 274 16 4 463 19 484 1.10e-50 179
Msa0933440 MtrunA17_Chr8g0359821 28.770 504 275 20 2 460 6 470 4.75e-50 177
Msa0933440 MtrunA17_Chr3g0112771 35.083 362 196 10 117 472 128 456 5.09e-50 177
Msa0933440 MtrunA17_Chr6g0449971 94.186 86 5 0 391 476 1 86 5.57e-50 165
Msa0933440 MtrunA17_Chr5g0420801 28.834 489 298 16 3 471 4 462 8.16e-50 176
Msa0933440 MtrunA17_Chr5g0423981 29.098 488 263 19 1 460 5 437 9.19e-50 176
Msa0933440 MtrunA17_Chr4g0042931 30.290 482 297 16 5 469 6 465 1.24e-49 176
Msa0933440 MtrunA17_Chr3g0079711 47.059 187 96 3 283 467 3 188 1.88e-49 167
Msa0933440 MtrunA17_Chr1g0173121 30.591 474 276 15 7 460 15 455 1.88e-49 175
Msa0933440 MtrunA17_Chr6g0454341 28.346 508 274 20 4 463 8 473 2.76e-49 175
Msa0933440 MtrunA17_Chr3g0078841 28.370 497 284 19 3 460 7 470 5.01e-49 174
Msa0933440 MtrunA17_Chr6g0454401 29.259 499 278 17 4 460 8 473 5.14e-49 175
Msa0933440 MtrunA17_Chr6g0454201 35.738 305 159 9 170 460 192 473 9.04e-49 174
Msa0933440 MtrunA17_Chr1g0159551 30.407 467 271 17 13 460 21 452 1.48e-48 173
Msa0933440 MtrunA17_Chr7g0265141 30.266 489 284 17 4 456 7 474 1.79e-48 173
Msa0933440 MtrunA17_Chr5g0414331 27.812 489 270 14 6 463 13 449 1.88e-48 173
Msa0933440 MtrunA17_Chr6g0454191 29.134 508 267 22 4 460 8 473 2.12e-48 173
Msa0933440 MtrunA17_Chr6g0454151 34.323 303 164 8 170 460 191 470 2.78e-48 172
Msa0933440 MtrunA17_Chr7g0243771 31.673 502 287 18 1 470 1 478 2.82e-48 173
Msa0933440 MtrunA17_Chr4g0053501 27.079 469 308 11 2 457 7 454 3.45e-48 173
Msa0933440 MtrunA17_Chr7g0265051 28.512 484 298 14 4 456 7 473 4.29e-48 172
Msa0933440 MtrunA17_Chr7g0265041 32.105 380 219 9 107 463 121 484 7.01e-48 172
Msa0933440 MtrunA17_Chr6g0454301 28.770 504 277 20 4 463 261 726 9.76e-48 175
Msa0933440 MtrunA17_Chr6g0454301 34.583 240 126 6 233 460 2 222 3.87e-35 139
Msa0933440 MtrunA17_Chr7g0243781 30.785 497 298 14 1 470 1 478 1.17e-47 171
Msa0933440 MtrunA17_Chr8g0382021 30.244 410 236 13 69 460 104 481 1.24e-47 171
Msa0933440 MtrunA17_Chr7g0243801 38.757 338 166 12 154 470 162 479 2.00e-47 171
Msa0933440 MtrunA17_Chr3g0118691 28.257 499 278 14 1 456 10 471 2.48e-47 170
Msa0933440 MtrunA17_Chr5g0414321 27.459 488 267 16 6 460 11 444 6.57e-47 169
Msa0933440 MtrunA17_Chr7g0243631 30.604 513 272 20 6 470 13 489 6.60e-47 169
Msa0933440 MtrunA17_Chr3g0118701 28.257 499 278 15 1 456 10 471 7.39e-47 169
Msa0933440 MtrunA17_Chr7g0243871 35.987 314 174 6 169 470 177 475 8.63e-47 169
Msa0933440 MtrunA17_Chr6g0454291 27.621 496 293 16 2 460 3 469 2.39e-46 167
Msa0933440 MtrunA17_Chr6g0454181 28.317 505 274 19 4 460 8 472 2.49e-46 167
Msa0933440 MtrunA17_Chr7g0243681 29.860 499 289 18 6 470 11 482 3.68e-46 167
Msa0933440 MtrunA17_Chr3g0118721 36.149 296 144 8 176 456 13 278 6.71e-46 161
Msa0933440 MtrunA17_Chr6g0453961 28.458 506 273 19 4 460 17 482 8.22e-46 166
Msa0933440 MtrunA17_Chr4g0044501 33.333 354 194 10 141 474 151 482 9.57e-46 166
Msa0933440 MtrunA17_Chr3g0118711 28.827 503 268 16 2 456 9 469 1.15e-45 166
Msa0933440 MtrunA17_Chr7g0265101 28.862 492 288 17 4 456 7 475 1.52e-45 166
Msa0933440 MtrunA17_Chr7g0243931 38.485 330 150 13 173 470 185 493 1.74e-45 166
Msa0933440 MtrunA17_Chr6g0453951 28.257 499 282 20 4 460 55 519 2.05e-45 166
Msa0933440 MtrunA17_Chr5g0442511 27.615 478 293 15 4 463 47 489 2.12e-45 165
Msa0933440 MtrunA17_Chr4g0060511 35.530 349 166 14 154 470 169 490 2.26e-45 165
Msa0933440 MtrunA17_Chr4g0053321 34.091 308 168 9 166 457 181 469 2.30e-45 165
Msa0933440 MtrunA17_Chr4g0042891 32.425 367 225 9 114 469 113 467 2.39e-45 164
Msa0933440 MtrunA17_Chr7g0217881 34.576 295 156 10 180 460 183 454 5.41e-45 163
Msa0933440 MtrunA17_Chr2g0307961 29.675 492 272 17 6 463 13 464 7.13e-45 163
Msa0933440 MtrunA17_Chr6g0464881 27.696 473 280 14 6 456 11 443 7.73e-45 163
Msa0933440 MtrunA17_Chr8g0336331 27.579 504 276 21 4 460 8 469 9.70e-45 163
Msa0933440 MtrunA17_Chr7g0235051 35.890 326 165 10 155 456 137 442 1.21e-44 162
Msa0933440 MtrunA17_Chr8g0380531 31.016 374 213 8 112 468 113 458 1.94e-44 162
Msa0933440 MtrunA17_Chr6g0464841 28.602 472 279 15 5 456 10 443 3.35e-44 161
Msa0933440 MtrunA17_Chr5g0419761 29.412 510 294 18 6 476 9 491 7.14e-44 161
Msa0933440 MtrunA17_Chr6g0454331 26.719 509 283 17 2 460 3 471 8.32e-44 160
Msa0933440 MtrunA17_Chr6g0454261 28.400 500 284 20 2 460 6 472 1.07e-43 160
Msa0933440 MtrunA17_Chr6g0454321 27.310 487 282 19 4 451 8 461 1.70e-43 162
Msa0933440 MtrunA17_Chr7g0243711 42.241 232 108 6 251 470 102 319 4.16e-43 155
Msa0933440 MtrunA17_Chr5g0440421 28.169 497 295 15 2 456 6 482 4.79e-43 159
Msa0933440 MtrunA17_Chr7g0243951 29.842 506 288 19 4 470 9 486 6.20e-43 158
Msa0933440 MtrunA17_Chr6g0454351 27.835 485 277 18 4 456 10 453 6.99e-43 157
Msa0933440 MtrunA17_Chr6g0454271 33.898 295 158 9 180 460 8 279 7.09e-43 153
Msa0933440 MtrunA17_Chr6g0464921 26.543 486 285 15 1 456 1 444 1.31e-42 157
Msa0933440 MtrunA17_Chr7g0218811 28.814 472 281 16 6 463 15 445 1.39e-42 156
Msa0933440 MtrunA17_Chr7g0249961 36.214 243 122 5 234 463 33 255 1.52e-42 152
Msa0933440 MtrunA17_Chr7g0243761 35.294 289 150 8 154 422 166 437 1.80e-42 156
Msa0933440 MtrunA17_Chr7g0275681 29.975 397 228 12 90 463 107 476 1.83e-42 157
Msa0933440 MtrunA17_Chr6g0454171 34.848 264 147 7 198 460 63 302 3.37e-42 152
Msa0933440 MtrunA17_Chr4g0044511 32.295 353 199 13 136 469 175 506 3.67e-42 156
Msa0933440 MtrunA17_Chr6g0464871 28.243 478 282 15 2 456 16 455 3.79e-42 155
Msa0933440 MtrunA17_Chr6g0452771 35.484 279 145 9 194 460 217 472 4.86e-42 155
Msa0933440 MtrunA17_Chr8g0377941 37.452 259 130 7 209 460 221 454 5.56e-42 155
Msa0933440 MtrunA17_Chr6g0454141 28.200 500 285 22 2 460 6 472 6.92e-42 155
Msa0933440 MtrunA17_Chr7g0243861 29.842 506 295 17 6 475 14 495 7.55e-42 155
Msa0933440 MtrunA17_Chr4g0014061 35.644 303 154 11 182 463 186 468 7.81e-42 155
Msa0933440 MtrunA17_Chr5g0419771 28.970 466 231 17 42 463 99 508 9.53e-42 155
Msa0933440 MtrunA17_Chr4g0032331 30.848 389 218 13 84 450 83 442 1.28e-41 154
Msa0933440 MtrunA17_Chr7g0249981 26.653 484 273 15 4 456 23 455 1.46e-41 154
Msa0933440 MtrunA17_Chr4g0072761 34.700 317 169 8 154 463 163 448 1.54e-41 154
Msa0933440 MtrunA17_Chr2g0329111 28.151 476 298 16 1 451 1 457 2.20e-41 154
Msa0933440 MtrunA17_Chr6g0454211 27.016 496 296 17 2 460 293 759 2.23e-41 157
Msa0933440 MtrunA17_Chr3g0098111 35.612 278 146 8 209 472 216 474 6.44e-41 152
Msa0933440 MtrunA17_Chr7g0243851 35.608 337 150 14 173 470 137 445 6.55e-41 152
Msa0933440 MtrunA17_Chr7g0218841 27.872 470 292 16 1 460 1 433 6.88e-41 152
Msa0933440 MtrunA17_Chr6g0454361 33.688 282 152 8 194 463 218 476 9.33e-41 152
Msa0933440 MtrunA17_Chr7g0265151 28.205 507 292 20 1 463 1 479 1.05e-40 152
Msa0933440 MtrunA17_Chr6g0464861 28.814 472 275 15 6 456 11 442 1.08e-40 151
Msa0933440 MtrunA17_Chr6g0482061 28.310 491 305 15 5 468 10 480 1.55e-40 152
Msa0933440 MtrunA17_Chr3g0112761 32.778 360 200 12 122 472 128 454 1.70e-40 151
Msa0933440 MtrunA17_Chr7g0218831 26.923 468 288 15 6 460 6 432 1.84e-40 150
Msa0933440 MtrunA17_Chr4g0044521 34.169 319 159 11 166 456 160 455 3.96e-40 150
Msa0933440 MtrunA17_Chr3g0118661 28.831 496 272 18 4 456 11 468 4.16e-40 150
Msa0933440 MtrunA17_Chr3g0121991 34.251 327 177 12 157 460 227 538 5.29e-40 151
Msa0933440 MtrunA17_Chr6g0454221 36.100 241 122 8 233 460 2 223 5.84e-40 145
Msa0933440 MtrunA17_Chr3g0118751 28.088 502 260 17 1 463 1 440 5.96e-40 149
Msa0933440 MtrunA17_Chr7g0249931 27.812 489 275 17 1 456 29 472 2.74e-39 148
Msa0933440 MtrunA17_Chr7g0250001 27.308 509 284 16 1 476 1 456 3.49e-39 147
Msa0933440 MtrunA17_Chr6g0454121 30.820 305 174 8 170 460 190 471 5.28e-39 147
Msa0933440 MtrunA17_Chr7g0218791 27.912 455 276 13 6 442 5 425 6.62e-39 146
Msa0933440 MtrunA17_Chr8g0334841 52.518 139 64 2 170 307 1 138 8.28e-39 139
Msa0933440 MtrunA17_Chr4g0011051 27.255 499 294 18 1 456 4 476 8.34e-39 147
Msa0933440 MtrunA17_Chr8g0377921 34.242 330 170 9 157 460 148 456 8.40e-39 146
Msa0933440 MtrunA17_Chr3g0122001 26.962 497 300 16 1 463 481 948 1.04e-38 150
Msa0933440 MtrunA17_Chr3g0122001 27.054 499 298 16 1 463 1 469 2.86e-36 142
Msa0933440 MtrunA17_Chr1g0207981 29.620 368 215 10 107 456 120 461 1.13e-38 146
Msa0933440 MtrunA17_Chr8g0355221 41.333 225 108 7 257 470 278 489 1.34e-38 146
Msa0933440 MtrunA17_Chr7g0218821 27.178 482 287 16 6 463 5 446 3.69e-38 144
Msa0933440 MtrunA17_Chr1g0179901 29.661 354 195 11 141 463 159 489 5.56e-38 145
Msa0933440 MtrunA17_Chr7g0243911 41.089 202 97 4 251 442 16 205 7.06e-38 138
Msa0933440 MtrunA17_Chr8g0361411 29.116 498 261 21 4 463 6 449 8.44e-38 144
Msa0933440 MtrunA17_Chr6g0463861 36.364 253 127 8 223 463 239 469 1.80e-37 143
Msa0933440 MtrunA17_Chr1g0207931 34.137 249 139 4 236 472 267 502 1.95e-37 143
Msa0933440 MtrunA17_Chr5g0431441 27.660 470 288 14 6 456 18 454 3.41e-37 142
Msa0933440 MtrunA17_Chr1g0165701 38.667 225 112 5 257 470 277 486 3.72e-37 142
Msa0933440 MtrunA17_Chr7g0243611 47.239 163 70 2 251 411 130 278 3.81e-37 138
Msa0933440 MtrunA17_Chr5g0412111 27.912 498 283 22 1 463 1 457 4.27e-37 142
Msa0933440 MtrunA17_Chr6g0454131 31.148 305 173 9 170 460 190 471 5.90e-37 142
Msa0933440 MtrunA17_Chr4g0066221 29.443 377 222 13 112 463 119 476 1.72e-36 140
Msa0933440 MtrunA17_Chr4g0044481 34.538 249 140 5 170 410 170 403 2.28e-36 139
Msa0933440 MtrunA17_Chr4g0066151 29.381 388 198 12 112 461 124 473 2.59e-36 140
Msa0933440 MtrunA17_Chr4g0066131 30.052 386 198 15 112 461 119 468 3.16e-36 139
Msa0933440 MtrunA17_Chr5g0393591 33.468 248 120 6 209 456 222 424 8.56e-36 138
Msa0933440 MtrunA17_Chr5g0431361 32.131 305 164 9 170 460 171 446 1.57e-35 137
Msa0933440 MtrunA17_Chr4g0066201 29.243 383 221 12 112 470 121 477 1.61e-35 137
Msa0933440 MtrunA17_Chr4g0066281 29.356 419 221 16 90 474 96 473 1.77e-35 137
Msa0933440 MtrunA17_Chr5g0401851 28.270 474 282 16 33 470 35 486 1.87e-35 137
Msa0933440 MtrunA17_Chr1g0207971 31.818 264 143 5 209 460 208 446 2.01e-35 137
Msa0933440 MtrunA17_Chr4g0072771 32.323 297 159 10 170 457 192 455 3.65e-35 136
Msa0933440 MtrunA17_Chr1g0207951 34.848 264 135 7 209 460 863 1101 5.17e-35 139
Msa0933440 MtrunA17_Chr1g0207951 31.538 260 140 4 209 456 326 559 1.20e-34 138
Msa0933440 MtrunA17_Chr8g0374901 29.679 374 220 13 113 463 121 474 5.98e-35 136
Msa0933440 MtrunA17_Chr4g0066261 28.871 381 220 10 112 463 119 477 7.13e-35 136
Msa0933440 MtrunA17_Chr7g0265111 26.899 487 289 17 4 463 65 511 9.50e-35 136
Msa0933440 MtrunA17_Chr1g0161351 33.712 264 146 5 209 460 244 490 1.08e-34 135
Msa0933440 MtrunA17_Chr8g0365811 33.835 266 147 7 209 460 700 950 1.46e-34 137
Msa0933440 MtrunA17_Chr8g0365811 33.945 218 123 5 236 441 241 449 2.61e-29 122
Msa0933440 MtrunA17_Chr7g0243811 36.232 276 143 12 159 420 136 392 1.49e-34 133
Msa0933440 MtrunA17_Chr5g0412101 25.780 481 269 17 2 439 8 443 2.88e-34 134
Msa0933440 MtrunA17_Chr8g0336321 42.021 188 95 3 257 444 269 442 6.11e-34 133
Msa0933440 MtrunA17_Chr8g0355011 30.100 299 154 9 170 466 115 360 1.21e-33 130
Msa0933440 MtrunA17_Chr5g0412131 25.738 474 269 16 6 439 12 442 1.23e-33 132
Msa0933440 MtrunA17_Chr8g0374941 36.652 221 120 7 255 463 1201 1413 1.64e-33 135
Msa0933440 MtrunA17_Chr8g0374941 35.238 210 116 6 255 452 263 464 2.53e-31 128
Msa0933440 MtrunA17_Chr8g0374941 36.715 207 111 5 255 449 728 926 3.68e-30 124
Msa0933440 MtrunA17_Chr8g0374971 29.345 351 202 13 129 456 142 469 3.36e-33 131
Msa0933440 MtrunA17_Chr5g0431421 31.683 303 168 8 170 460 166 441 4.02e-33 130
Msa0933440 MtrunA17_Chr5g0416741 28.770 431 250 14 70 470 83 486 4.02e-33 131
Msa0933440 MtrunA17_Chr7g0218311 29.843 382 226 12 112 470 124 486 4.75e-33 130
Msa0933440 MtrunA17_Chr5g0431401 29.739 306 176 7 170 463 166 444 5.56e-33 130
Msa0933440 MtrunA17_Chr6g0463851 34.632 231 128 6 255 470 266 488 6.81e-33 130
Msa0933440 MtrunA17_Chr8g0336251 41.489 188 96 3 257 444 269 442 8.11e-33 130
Msa0933440 MtrunA17_Chr5g0427571 40.957 188 97 3 257 444 103 276 9.23e-33 126
Msa0933440 MtrunA17_Chr1g0207831 32.331 266 141 7 209 460 216 456 1.06e-32 129
Msa0933440 MtrunA17_Chr5g0431371 30.693 303 171 8 170 460 166 441 1.21e-32 129
Msa0933440 MtrunA17_Chr1g0207861 27.010 485 301 15 2 460 4 461 1.39e-32 129
Msa0933440 MtrunA17_Chr5g0401721 31.373 255 144 6 227 463 225 466 1.49e-32 129
Msa0933440 MtrunA17_Chr5g0432731 30.363 303 166 10 170 456 12 285 2.20e-32 125
Msa0933440 MtrunA17_Chr6g0463891 28.715 397 240 10 102 474 113 490 2.46e-32 129
Msa0933440 MtrunA17_Chr2g0294941 31.900 279 158 10 196 452 96 364 3.45e-32 126
Msa0933440 MtrunA17_Chr4g0066171 35.043 234 126 7 255 475 264 484 3.62e-32 128
Msa0933440 MtrunA17_Chr2g0294931 35.000 220 124 5 255 463 266 477 9.12e-32 127
Msa0933440 MtrunA17_Chr5g0410941 27.477 444 275 17 50 463 59 485 4.07e-31 125
Msa0933440 MtrunA17_Chr7g0241781 29.344 259 158 5 186 442 169 404 8.86e-31 123
Msa0933440 MtrunA17_Chr4g0029131 27.088 491 300 18 1 471 7 459 1.31e-30 125
Msa0933440 MtrunA17_Chr8g0367221 33.981 206 124 3 258 463 1547 1740 1.55e-30 126
Msa0933440 MtrunA17_Chr8g0367221 29.658 263 165 5 206 464 218 464 9.89e-29 120
Msa0933440 MtrunA17_Chr8g0367221 32.536 209 129 2 249 457 1048 1244 2.40e-27 116
Msa0933440 MtrunA17_Chr5g0448551 28.721 383 218 13 86 445 81 431 2.40e-30 122
Msa0933440 MtrunA17_Chr5g0428081 34.348 230 132 5 252 470 261 482 4.37e-30 122
Msa0933440 MtrunA17_Chr6g0454371 34.637 179 98 5 282 460 4 163 5.51e-30 115
Msa0933440 MtrunA17_Chr4g0040691 27.838 370 235 7 70 430 73 419 5.62e-30 121
Msa0933440 MtrunA17_Chr8g0350881 33.790 219 125 4 257 463 266 476 8.23e-30 121
Msa0933440 MtrunA17_Chr4g0040711 27.419 372 234 7 70 430 73 419 1.15e-29 120
Msa0933440 MtrunA17_Chr8g0374931 34.742 213 120 5 255 456 266 470 1.25e-29 121
Msa0933440 MtrunA17_Chr5g0409591 36.979 192 108 3 250 434 268 453 1.38e-29 120
Msa0933440 MtrunA17_Chr3g0106251 30.132 302 171 8 170 460 14 286 1.99e-29 117
Msa0933440 MtrunA17_Chr3g0106231 25.265 471 288 15 5 457 17 441 3.87e-29 119
Msa0933440 MtrunA17_Chr4g0029151 27.143 490 299 19 1 470 15 466 5.18e-29 119
Msa0933440 MtrunA17_Chr7g0241801 24.342 456 279 13 4 445 7 410 6.11e-29 118
Msa0933440 MtrunA17_Chr2g0294921 33.040 227 133 5 255 470 415 633 1.10e-28 119
Msa0933440 MtrunA17_Chr6g0454251 26.253 419 245 17 2 382 3 395 1.69e-28 116
Msa0933440 MtrunA17_Chr2g0278741 26.617 402 258 11 57 442 143 523 2.18e-28 118
Msa0933440 MtrunA17_Chr8g0336261 36.842 152 77 5 282 433 4 136 7.69e-28 107
Msa0933440 MtrunA17_Chr3g0092031 34.595 185 103 4 259 442 6 173 2.45e-27 108
Msa0933440 MtrunA17_Chr4g0069611 34.694 196 109 5 249 442 258 436 3.18e-27 114
Msa0933440 MtrunA17_Chr2g0278721 26.961 408 249 14 57 442 61 441 6.99e-27 114
Msa0933440 MtrunA17_Chr2g0278721 36.757 185 99 4 259 442 785 952 8.82e-26 111
Msa0933440 MtrunA17_Chr6g0454231 29.502 261 117 8 206 457 5 207 2.95e-26 111
Msa0933440 MtrunA17_Chr5g0416821 29.651 344 175 14 160 474 174 479 2.29e-25 108
Msa0933440 MtrunA17_Chr5g0442501 28.797 316 206 9 4 309 3 309 2.83e-25 105
Msa0933440 MtrunA17_Chr5g0431431 30.403 273 152 8 170 436 116 356 3.72e-25 106
Msa0933440 MtrunA17_Chr6g0466831 34.896 192 106 5 259 449 272 445 5.11e-25 107
Msa0933440 MtrunA17_Chr6g0466841 34.896 192 106 5 259 449 272 445 1.26e-24 106
Msa0933440 MtrunA17_Chr1g0196851 36.500 200 113 4 258 453 296 485 2.00e-24 105
Msa0933440 MtrunA17_Chr8g0357361 33.010 206 110 7 208 404 63 249 4.31e-24 101
Msa0933440 MtrunA17_Chr4g0039881 34.946 186 103 4 259 443 246 414 5.58e-24 104
Msa0933440 MtrunA17_Chr1g0207881 39.844 128 74 2 335 460 251 377 7.25e-23 100
Msa0933440 MtrunA17_Chr2g0283041 32.768 177 105 2 255 430 254 417 1.49e-22 100
Msa0933440 MtrunA17_Chr4g0066141 39.752 161 75 4 327 470 199 354 3.19e-22 97.8
Msa0933440 MtrunA17_Chr2g0302851 30.242 248 150 7 201 442 207 437 3.22e-22 99.4
Msa0933440 MtrunA17_Chr7g0231631 32.889 225 111 5 257 470 67 262 5.04e-22 95.5
Msa0933440 MtrunA17_Chr6g0464091 34.091 176 98 4 258 432 278 436 2.11e-21 96.7
Msa0933440 MtrunA17_Chr2g0319791 28.280 343 192 12 124 443 123 434 1.43e-20 94.0
Msa0933440 MtrunA17_Chr7g0243731 50.685 73 36 0 339 411 6 78 7.79e-19 80.9
Msa0933440 MtrunA17_Chr2g0319801 28.402 338 198 9 124 443 123 434 1.12e-18 88.6
Msa0933440 MtrunA17_Chr4g0029161 25.458 491 280 20 1 471 7 431 1.74e-18 87.4
Msa0933440 MtrunA17_Chr2g0319761 29.003 331 203 8 125 443 124 434 1.81e-18 87.8
Msa0933440 MtrunA17_Chr3g0079721 25.694 288 198 7 4 277 3 288 2.06e-18 85.5
Msa0933440 MtrunA17_Chr2g0321331 33.149 181 87 5 267 442 94 245 4.45e-18 84.3
Msa0933440 MtrunA17_Chr6g0469961 32.886 149 91 3 158 299 18 164 1.18e-17 80.5
Msa0933440 MtrunA17_Chr2g0319751 32.701 211 116 5 255 452 732 929 1.82e-17 85.5
Msa0933440 MtrunA17_Chr2g0319751 38.333 120 70 3 328 443 291 410 1.99e-14 76.3
Msa0933440 MtrunA17_Chr8g0339611 42.308 130 69 3 1 127 1 127 2.74e-17 78.2
Msa0933440 MtrunA17_Chr2g0319731 32.821 195 114 4 253 443 270 451 4.89e-15 77.4
Msa0933440 MtrunA17_Chr5g0442551 27.344 256 160 6 101 351 60 294 1.16e-13 71.6
Msa0933440 MtrunA17_Chr6g0454391 40.909 66 35 2 358 423 13 74 1.15e-12 64.7
Msa0933440 MtrunA17_Chr6g0453981 33.750 160 82 6 176 323 76 223 1.31e-12 67.4
Msa0933440 MtrunA17_Chr6g0469951 34.066 91 58 1 380 468 1 91 2.87e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0933440 AT4G01070.1 44.068 472 255 7 2 469 3 469 2.47e-133 394
Msa0933440 AT1G01420.1 43.683 467 254 7 6 469 8 468 7.10e-126 375
Msa0933440 AT1G01420.2 43.683 467 254 7 6 469 11 471 7.39e-126 375
Msa0933440 AT1G01390.1 43.737 471 249 7 6 469 8 469 1.64e-116 351
Msa0933440 AT1G01390.2 43.737 471 249 7 6 469 25 486 3.79e-116 350
Msa0933440 AT2G18570.1 37.605 476 271 13 4 466 3 465 1.44e-94 294
Msa0933440 AT5G66690.1 36.207 464 269 10 3 454 4 452 5.93e-89 280
Msa0933440 AT2G18560.1 41.534 378 201 9 96 464 7 373 1.90e-88 275
Msa0933440 AT3G50740.1 35.974 467 273 11 3 454 4 459 3.80e-88 278
Msa0933440 AT5G26310.1 34.341 463 285 10 3 457 4 455 1.75e-85 271
Msa0933440 AT4G36770.1 38.395 461 250 15 6 450 4 446 4.39e-85 269
Msa0933440 AT3G16520.3 36.170 376 223 6 95 467 98 459 8.60e-77 248
Msa0933440 AT3G16520.1 35.326 368 221 6 93 457 96 449 1.18e-72 237
Msa0933440 AT3G16520.2 35.635 362 216 6 95 453 98 445 1.48e-72 236
Msa0933440 AT4G01070.2 37.607 351 208 8 2 348 3 346 7.79e-66 216
Msa0933440 AT1G07250.1 32.041 490 284 18 1 463 1 468 1.53e-62 211
Msa0933440 AT1G07260.1 31.579 494 280 17 1 463 1 467 2.33e-60 205
Msa0933440 AT3G21800.1 31.185 481 292 12 4 460 3 468 6.60e-59 201
Msa0933440 AT1G78270.1 31.056 483 264 18 4 449 11 461 1.05e-54 190
Msa0933440 AT3G21780.1 30.000 480 299 13 4 463 2 464 3.63e-53 186
Msa0933440 AT2G29740.1 29.713 488 296 17 2 463 4 470 2.49e-52 184
Msa0933440 AT3G21750.1 30.297 472 302 13 4 460 2 461 3.69e-52 183
Msa0933440 AT2G31750.1 27.789 493 285 13 2 466 4 453 3.08e-51 180
Msa0933440 AT2G31750.2 27.789 493 285 13 2 466 4 453 8.49e-51 180
Msa0933440 AT1G73880.1 29.249 506 275 18 3 471 11 470 9.36e-51 179
Msa0933440 AT3G21790.1 28.690 481 308 14 4 460 2 471 1.60e-50 179
Msa0933440 AT2G15490.1 32.791 369 222 7 101 456 114 469 1.93e-50 179
Msa0933440 AT2G15490.3 33.062 369 218 7 101 456 114 466 2.26e-50 179
Msa0933440 AT1G07240.1 30.165 484 281 17 9 459 8 467 6.73e-50 177
Msa0933440 AT5G14860.1 29.065 492 295 16 6 472 8 470 9.38e-50 177
Msa0933440 AT4G15280.1 28.870 478 306 15 4 460 2 466 1.70e-49 176
Msa0933440 AT1G22400.1 28.373 504 288 20 4 467 11 481 1.73e-49 176
Msa0933440 AT4G15280.2 29.167 480 302 16 4 460 34 498 2.45e-49 176
Msa0933440 AT1G05680.1 30.075 399 231 7 85 464 80 449 2.61e-49 175
Msa0933440 AT1G22360.1 28.571 511 275 20 4 466 8 476 3.21e-49 176
Msa0933440 AT3G21760.1 33.244 373 220 13 106 460 112 473 3.91e-49 175
Msa0933440 AT2G29710.1 27.406 478 291 17 5 456 4 451 4.81e-49 175
Msa0933440 AT1G22380.1 29.109 505 284 21 2 466 9 479 5.03e-49 175
Msa0933440 AT2G29730.1 27.521 476 293 16 5 456 4 451 1.05e-48 174
Msa0933440 AT2G15480.1 33.065 372 214 10 101 456 117 469 3.59e-48 173
Msa0933440 AT4G15260.1 33.884 363 203 15 118 460 2 347 4.95e-48 169
Msa0933440 AT4G34131.1 32.527 372 219 11 99 456 115 468 6.96e-47 169
Msa0933440 AT2G29750.1 29.508 488 284 19 2 452 4 468 1.73e-46 168
Msa0933440 AT1G05675.1 27.273 484 281 13 1 456 1 441 2.36e-46 167
Msa0933440 AT2G15480.2 31.807 393 217 11 93 456 109 479 1.38e-45 166
Msa0933440 AT4G34138.1 33.714 350 172 11 141 463 158 474 1.41e-45 166
Msa0933440 AT3G46680.1 28.000 475 297 16 1 463 4 445 2.47e-45 164
Msa0933440 AT1G24100.1 26.915 483 297 16 2 463 7 454 3.74e-45 164
Msa0933440 AT2G36770.1 28.252 492 298 16 6 463 14 484 9.71e-45 164
Msa0933440 AT5G05870.1 39.163 263 135 8 206 463 208 450 1.21e-44 163
Msa0933440 AT1G22340.1 28.144 501 291 18 4 466 11 480 1.68e-44 163
Msa0933440 AT1G22370.2 29.200 500 281 20 4 466 11 474 2.45e-44 162
Msa0933440 AT1G10400.1 29.545 484 287 15 4 463 5 458 2.61e-44 162
Msa0933440 AT2G36970.1 31.579 361 209 9 110 456 123 459 4.23e-44 162
Msa0933440 AT2G36800.1 28.543 494 295 16 6 463 12 483 4.37e-44 162
Msa0933440 AT2G30140.2 29.274 468 281 13 6 460 13 443 9.97e-44 160
Msa0933440 AT2G30140.1 29.211 469 281 13 6 460 13 444 1.23e-43 160
Msa0933440 AT1G22360.2 27.397 511 269 20 4 466 8 464 1.49e-43 160
Msa0933440 AT3G53150.1 28.205 507 296 16 4 463 20 505 1.86e-43 160
Msa0933440 AT3G46670.1 28.964 473 278 18 6 460 9 441 1.98e-43 159
Msa0933440 AT5G59590.1 27.371 464 301 13 4 460 8 442 2.65e-43 159
Msa0933440 AT3G53160.1 33.156 377 184 13 124 463 133 478 3.73e-43 159
Msa0933440 AT3G11340.1 29.375 480 277 15 2 463 5 440 4.95e-43 158
Msa0933440 AT2G16890.2 29.365 378 229 8 103 466 112 465 5.65e-43 159
Msa0933440 AT3G55700.1 32.670 352 196 12 117 463 131 446 7.36e-43 158
Msa0933440 AT2G36780.1 34.706 340 186 9 146 463 159 484 1.16e-42 158
Msa0933440 AT2G31790.1 29.353 402 231 11 81 456 71 445 1.35e-42 157
Msa0933440 AT3G46690.1 28.571 476 287 17 4 463 7 445 2.09e-42 156
Msa0933440 AT5G59580.1 27.623 467 303 12 3 463 6 443 5.64e-42 155
Msa0933440 AT5G05880.1 37.647 255 136 7 214 463 208 444 7.23e-42 155
Msa0933440 AT2G30150.2 28.416 461 288 11 6 456 13 441 1.13e-40 152
Msa0933440 AT3G46650.1 28.172 465 275 17 1 455 5 420 1.42e-40 151
Msa0933440 AT1G22370.1 35.739 291 141 9 176 451 29 288 1.93e-40 147
Msa0933440 AT4G34135.1 29.480 346 211 7 99 429 116 443 2.21e-40 151
Msa0933440 AT2G43820.1 35.816 282 136 10 193 456 181 435 3.91e-40 150
Msa0933440 AT2G23260.1 27.917 480 282 15 4 460 8 446 7.14e-40 149
Msa0933440 AT2G30150.1 28.634 454 282 11 13 456 4 425 8.55e-40 149
Msa0933440 AT3G46700.1 32.895 304 159 12 175 464 169 441 1.08e-39 149
Msa0933440 AT3G46660.1 28.958 480 283 20 3 463 11 451 2.37e-39 148
Msa0933440 AT5G05890.1 35.294 289 153 8 179 463 190 448 4.94e-39 147
Msa0933440 AT2G26480.1 32.222 360 213 13 113 463 104 441 7.10e-39 147
Msa0933440 AT2G28080.1 29.855 345 204 11 125 457 142 460 7.47e-39 147
Msa0933440 AT5G38040.1 33.670 297 167 9 170 460 170 442 8.87e-39 146
Msa0933440 AT4G15480.1 33.459 266 154 6 209 466 227 477 9.58e-39 147
Msa0933440 AT5G03490.1 28.484 488 285 20 6 470 19 465 1.10e-38 146
Msa0933440 AT4G14090.1 30.892 314 169 9 165 460 165 448 1.80e-38 145
Msa0933440 AT2G43840.1 32.423 293 151 7 193 466 181 445 2.76e-38 145
Msa0933440 AT2G43840.2 32.414 290 155 7 193 466 181 445 3.58e-38 145
Msa0933440 AT2G36750.1 34.909 275 147 6 208 463 218 479 4.08e-38 145
Msa0933440 AT3G02100.1 26.166 493 283 15 4 463 11 455 6.13e-38 144
Msa0933440 AT4G15490.1 27.937 383 228 12 105 466 110 465 1.16e-37 144
Msa0933440 AT5G05900.1 38.272 243 119 6 226 463 227 443 1.52e-37 143
Msa0933440 AT2G36760.1 33.452 281 148 7 197 456 215 477 2.94e-37 143
Msa0933440 AT3G55710.1 31.831 355 201 12 117 463 129 450 4.00e-37 142
Msa0933440 AT5G12890.1 29.315 365 232 11 111 463 127 477 4.20e-37 142
Msa0933440 AT1G51210.1 29.158 463 256 18 4 442 18 432 4.78e-37 141
Msa0933440 AT2G16890.3 29.217 332 197 8 103 420 112 419 5.90e-37 141
Msa0933440 AT5G38010.1 32.595 316 176 10 162 463 157 449 1.20e-36 140
Msa0933440 AT2G36790.1 36.458 288 146 8 196 463 213 483 2.66e-36 140
Msa0933440 AT3G46720.1 26.964 471 292 16 4 463 7 436 4.41e-36 139
Msa0933440 AT4G15550.1 26.582 474 307 15 3 456 10 462 6.06e-36 139
Msa0933440 AT2G23250.1 29.191 346 206 7 131 460 106 428 8.67e-36 138
Msa0933440 AT5G49690.1 28.178 472 270 16 2 445 6 436 1.31e-35 138
Msa0933440 AT5G05860.1 31.420 331 158 11 168 464 149 444 3.05e-35 137
Msa0933440 AT1G05560.1 27.195 467 293 16 6 456 5 440 3.10e-35 137
Msa0933440 AT1G05560.2 27.195 467 293 16 6 456 55 490 6.08e-35 137
Msa0933440 AT4G15500.1 31.618 272 153 7 197 456 201 451 5.78e-33 130
Msa0933440 AT1G05530.1 27.119 472 296 18 3 456 2 443 8.53e-33 130
Msa0933440 AT3G21560.1 30.104 289 170 6 190 466 203 471 1.45e-32 130
Msa0933440 AT5G65550.1 25.105 474 287 15 4 445 7 444 3.34e-32 128
Msa0933440 AT1G30530.1 25.000 464 301 12 5 456 11 439 2.98e-30 122
Msa0933440 AT5G17040.1 26.096 479 273 16 5 456 4 428 7.15e-30 121
Msa0933440 AT1G06000.1 27.917 480 268 18 4 463 8 429 9.20e-30 121
Msa0933440 AT5G17050.1 30.620 258 156 5 206 463 218 452 4.93e-29 119
Msa0933440 AT5G17030.1 29.297 256 150 5 206 456 215 444 7.13e-27 113
Msa0933440 AT5G17040.2 32.843 204 107 4 257 456 149 326 1.19e-25 107
Msa0933440 AT5G37950.2 32.258 217 125 7 170 382 140 338 1.65e-25 107
Msa0933440 AT5G37950.1 32.258 217 125 7 170 382 146 344 1.71e-25 107
Msa0933440 AT2G22590.1 24.145 497 301 14 3 464 12 467 9.60e-25 107
Msa0933440 AT4G27570.1 33.526 173 102 1 255 427 246 405 2.70e-24 105
Msa0933440 AT5G54010.1 34.104 173 101 1 255 427 246 405 4.83e-24 104
Msa0933440 AT1G64910.1 29.524 210 133 2 236 443 221 417 9.01e-24 103
Msa0933440 AT4G27560.1 31.551 187 113 2 255 441 246 417 1.72e-23 103
Msa0933440 AT5G53990.1 32.161 199 118 3 249 443 232 417 1.64e-22 100
Msa0933440 AT3G22250.1 30.400 250 132 10 228 463 235 456 1.77e-22 100
Msa0933440 AT3G29630.1 32.057 209 124 4 240 443 225 420 3.27e-21 96.3
Msa0933440 AT3G29630.2 33.511 188 109 3 259 443 220 394 6.31e-21 95.1
Msa0933440 AT5G54060.1 29.808 208 129 4 236 441 244 436 3.81e-20 93.2
Msa0933440 AT2G22930.1 25.592 211 139 2 240 445 225 422 8.70e-20 92.0
Msa0933440 AT1G50580.1 30.288 208 129 3 238 443 225 418 3.97e-19 90.1
Msa0933440 AT1G64920.1 25.556 270 173 6 187 443 167 421 6.71e-19 89.4
Msa0933440 AT4G09500.1 28.042 189 118 2 259 442 219 394 2.13e-18 87.8
Msa0933440 AT4G09500.2 26.442 208 135 2 240 442 225 419 2.38e-18 87.8
Msa0933440 AT4G34135.2 25.701 214 147 4 99 303 116 326 3.30e-11 65.1

Find 85 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATAACACCGTGTTTATT+TGG 0.192473 6_3:-1913419 None:intergenic
GGTAAGTCTTCTAAATTTAT+TGG 0.211130 6_3:-1912714 None:intergenic
TGAGTGGCCAAAACTTTATA+TGG 0.213736 6_3:+1913384 Msa0933440:CDS
GGCATTAAAGTGGAAAAGTT+TGG 0.227048 6_3:+1913895 Msa0933440:CDS
ACACTTGAAAGTGTTGTAAA+TGG 0.230008 6_3:+1913614 Msa0933440:CDS
AGACCTATTAGAACCGTTAA+AGG 0.236257 6_3:+1912992 Msa0933440:CDS
TCAATTTGTGGTGCCCAATA+TGG 0.236971 6_3:-1913536 None:intergenic
AATTTAATGGTTGGTGAAAA+AGG 0.249509 6_3:+1913779 Msa0933440:CDS
CTATTTAGCTGATGGTATAT+TGG 0.254708 6_3:+1913115 Msa0933440:CDS
ATTGATGCTTTAAAGCAAAA+TGG 0.263650 6_3:+1913845 Msa0933440:CDS
AACATGTAGTTTATGTTTGA+TGG 0.271527 6_3:-1912684 None:intergenic
TGAGGTTGTAAAGAATTTAA+TGG 0.280412 6_3:+1913766 Msa0933440:CDS
AGACCTAAAGTTAAAGAAAA+TGG 0.287421 6_3:+1913719 Msa0933440:CDS
TTAAAACCCATATAAAGTTT+TGG 0.305742 6_3:-1913391 None:intergenic
GCACCACAAATTGAAATTCT+TGG 0.310276 6_3:+1913545 Msa0933440:CDS
CAAATAATTGAGCTTGCATT+TGG 0.324695 6_3:+1913353 Msa0933440:CDS
AAGAGTGGCCATGCTATTAT+TGG 0.327435 6_3:-1913641 None:intergenic
TTAGAACCGTTAAAGGTTCC+TGG 0.331011 6_3:+1912999 Msa0933440:CDS
GGCTAAAATATCGAGTTTCT+TGG 0.335608 6_3:-1912883 None:intergenic
AGGTTTAGTAGTTCCATATT+GGG 0.358786 6_3:+1913523 Msa0933440:CDS
GAACCTTTAACGGTTCTAAT+AGG 0.360570 6_3:-1912995 None:intergenic
AACTAAGGCTATGTGAGTTT+TGG 0.362459 6_3:-1912514 None:intergenic
AAGGTTTAGTAGTTCCATAT+TGG 0.367840 6_3:+1913522 Msa0933440:CDS
AACAATGACTCTTACCCATT+TGG 0.368014 6_3:+1913874 Msa0933440:CDS
CAAAATGTGTCATGTGATAA+TGG 0.370677 6_3:+1913236 Msa0933440:CDS
GCATTAAAGTGGAAAAGTTT+GGG 0.371076 6_3:+1913896 Msa0933440:CDS
ATCGCAGGGTGAATATCTTT+CGG 0.382078 6_3:-1912735 None:intergenic
ATTCTTGGTCATAGTTCAAT+TGG 0.387900 6_3:+1913560 Msa0933440:CDS
ACATGCATTAACCCCACATT+TGG 0.390914 6_3:+1912618 Msa0933440:CDS
ATTCCTTCTATTTACCCAAT+TGG 0.393476 6_3:+1913203 Msa0933440:CDS
TGACCAAGAATTTCAATTTG+TGG 0.408557 6_3:-1913548 None:intergenic
TTCTAATAGGTCTTTATTTG+TGG 0.420032 6_3:-1912982 None:intergenic
TTTGCACAAAAGGGCCAATT+GGG 0.420559 6_3:-1913217 None:intergenic
ATGCAACCAGGAACCTTTAA+CGG 0.420646 6_3:-1913005 None:intergenic
GAGTGGCCAAAACTTTATAT+GGG 0.430051 6_3:+1913385 Msa0933440:CDS
AATTGAGCTTGCATTTGGAT+TGG 0.431696 6_3:+1913358 Msa0933440:CDS
GGGCCAATTGGGTAAATAGA+AGG 0.432659 6_3:-1913206 None:intergenic
TTTCCACTTTAATGCCAAAT+GGG 0.447833 6_3:-1913888 None:intergenic
GATCGATCAAGCATAGGGTC+TGG 0.453009 6_3:-1913050 None:intergenic
TGCATGTGACATGAATGTTT+TGG 0.461808 6_3:-1912602 None:intergenic
GTGGCTTCCACTTTGATCGC+AGG 0.475136 6_3:-1912750 None:intergenic
AGTTAAAGAAAATGGTATAG+TGG 0.476943 6_3:+1913727 Msa0933440:CDS
TTACCCATTTGGCATTAAAG+TGG 0.480868 6_3:+1913885 Msa0933440:CDS
GTATACAGGAACTGTAACTA+AGG 0.483918 6_3:-1912529 None:intergenic
GTTATTGATGATCTTGATAG+TGG 0.484609 6_3:+1913434 Msa0933440:CDS
GAACGTAGGTGGCTGTATAC+AGG 0.491564 6_3:-1912543 None:intergenic
TTGTATGTTTCATTTGGAAG+TGG 0.492668 6_3:+1913311 Msa0933440:CDS
ATCGATCAAGCATAGGGTCT+GGG 0.500451 6_3:-1913049 None:intergenic
CTTGTTGCAGTTATTTCCGA+TGG 0.508108 6_3:+1912834 Msa0933440:CDS
CTTGGTCATAGTTCAATTGG+TGG 0.509267 6_3:+1913563 Msa0933440:CDS
TGATGGAAGAGTTTCAAAGA+GGG 0.510138 6_3:-1912667 None:intergenic
AAGCGATAGTAACATGGTTG+TGG 0.513688 6_3:-1912922 None:intergenic
ATAACACCGTGTTTATTTGG+TGG 0.515041 6_3:-1913416 None:intergenic
CACTTCGTTTATTAAACCAT+CGG 0.516777 6_3:-1912850 None:intergenic
GATAGATTCTATTTAGCTGA+TGG 0.521190 6_3:+1913107 Msa0933440:CDS
TTGGAAAGAACAAAAGGGAA+AGG 0.521399 6_3:+1913503 Msa0933440:CDS
AGGAATAGAACGGTGTATAG+TGG 0.531985 6_3:-1912769 None:intergenic
TATGTTTCATTTGGAAGTGG+TGG 0.533187 6_3:+1913314 Msa0933440:CDS
GGGAGATCAGTACTATGAAT+CGG 0.533329 6_3:-1913029 None:intergenic
CACTTGATCGATCAAGCATA+GGG 0.540091 6_3:-1913055 None:intergenic
TCTTGATAGTGGTGAATATG+AGG 0.544784 6_3:+1913445 Msa0933440:CDS
CAAATTGAAGAACCAAATGT+GGG 0.551300 6_3:-1912630 None:intergenic
TGGCTTCCACTTTGATCGCA+GGG 0.559028 6_3:-1912749 None:intergenic
AAGTCTTCTAAATTTATTGG+TGG 0.560596 6_3:-1912711 None:intergenic
GGAAAGAGAAGAGATAGCTG+AGG 0.563208 6_3:+1913748 Msa0933440:CDS
GTTGTAAAGAATTTAATGGT+TGG 0.564997 6_3:+1913770 Msa0933440:CDS
TCACTTGATCGATCAAGCAT+AGG 0.566683 6_3:-1913056 None:intergenic
TTCAATGCATCATAAATCGA+AGG 0.570701 6_3:-1912789 None:intergenic
GTTAAGTGATGGTTTGAAAG+TGG 0.578135 6_3:+1913691 Msa0933440:CDS
AAAAGTTTGGGATCACATCA+AGG 0.578754 6_3:+1913908 Msa0933440:CDS
GATAGTAACATGGTTGTGGA+AGG 0.592488 6_3:-1912918 None:intergenic
ATGGAATTCCAATAATAGCA+TGG 0.592775 6_3:+1913633 Msa0933440:CDS
GCATTTGGATTGGAATTGAG+TGG 0.599604 6_3:+1913368 Msa0933440:CDS
CAAACAAAGCGATAGTAACA+TGG 0.602671 6_3:-1912928 None:intergenic
GCAAATTGAAGAACCAAATG+TGG 0.603912 6_3:-1912631 None:intergenic
TGTGGAAGGAAAATATGAGT+AGG 0.608543 6_3:-1912904 None:intergenic
CTATGAATCGGTATGCAACC+AGG 0.610809 6_3:-1913017 None:intergenic
AATGCAGCTTTGTTAAGTGA+TGG 0.612130 6_3:+1913680 Msa0933440:CDS
TATTCACCCTGCGATCAAAG+TGG 0.621468 6_3:+1912743 Msa0933440:CDS
CATAAATCGAAGGAATAGAA+CGG 0.634660 6_3:-1912779 None:intergenic
TTGATGGAAGAGTTTCAAAG+AGG 0.638118 6_3:-1912668 None:intergenic
ATTCAAGAATTGAACGTAGG+TGG 0.648873 6_3:-1912554 None:intergenic
TGAATTCAAGAATTGAACGT+AGG 0.660974 6_3:-1912557 None:intergenic
TTAAGGCCACCAAATAAACA+CGG 0.693632 6_3:+1913410 Msa0933440:CDS
AAATTGAAGAACCAAATGTG+GGG 0.718366 6_3:-1912629 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGAATATTTGAGATTTT+TGG + chr6_3:1913265-1913284 Msa0933440:CDS 15.0%
!!! TTTTGAATATTTGAGATTTT+TGG + chr6_3:1913265-1913284 Msa0933440:CDS 15.0%
!!! TTAAAACCCATATAAAGTTT+TGG - chr6_3:1913394-1913413 None:intergenic 20.0%
!!! AAAACTTTATATGGGTTTTA+AGG + chr6_3:1913393-1913412 Msa0933440:CDS 20.0%
!!! TTTTTTACCAAATGAGTTTT+TGG + chr6_3:1913484-1913503 Msa0933440:CDS 20.0%
!!! ATACCATTTTCTTTAACTTT+AGG - chr6_3:1913725-1913744 None:intergenic 20.0%
!!! TTAAAACCCATATAAAGTTT+TGG - chr6_3:1913394-1913413 None:intergenic 20.0%
!!! AAAACTTTATATGGGTTTTA+AGG + chr6_3:1913393-1913412 Msa0933440:CDS 20.0%
!!! TTTTTTACCAAATGAGTTTT+TGG + chr6_3:1913484-1913503 Msa0933440:CDS 20.0%
!!! ATACCATTTTCTTTAACTTT+AGG - chr6_3:1913725-1913744 None:intergenic 20.0%
! TCTTGAATTCACCAAAAAAT+TGG + chr6_3:1912569-1912588 Msa0933440:CDS 25.0%
! AACATGTAGTTTATGTTTGA+TGG - chr6_3:1912687-1912706 None:intergenic 25.0%
! AAGTCTTCTAAATTTATTGG+TGG - chr6_3:1912714-1912733 None:intergenic 25.0%
! GGTAAGTCTTCTAAATTTAT+TGG - chr6_3:1912717-1912736 None:intergenic 25.0%
!! TTCTAATAGGTCTTTATTTG+TGG - chr6_3:1912985-1913004 None:intergenic 25.0%
!! TCTGTTTTGTATGTTTCATT+TGG + chr6_3:1913305-1913324 Msa0933440:CDS 25.0%
!!! AGTTTTTGGAAAGAACAAAA+GGG + chr6_3:1913498-1913517 Msa0933440:CDS 25.0%
! AGACCTAAAGTTAAAGAAAA+TGG + chr6_3:1913719-1913738 Msa0933440:CDS 25.0%
! AGTTAAAGAAAATGGTATAG+TGG + chr6_3:1913727-1913746 Msa0933440:CDS 25.0%
! TGAGGTTGTAAAGAATTTAA+TGG + chr6_3:1913766-1913785 Msa0933440:CDS 25.0%
! GTTGTAAAGAATTTAATGGT+TGG + chr6_3:1913770-1913789 Msa0933440:CDS 25.0%
!!! AATTTAATGGTTGGTGAAAA+AGG + chr6_3:1913779-1913798 Msa0933440:CDS 25.0%
!!! CTTTCAACTTTTTCATTCTT+TGG - chr6_3:1913817-1913836 None:intergenic 25.0%
! CAAAGAATGAAAAAGTTGAA+AGG + chr6_3:1913815-1913834 Msa0933440:CDS 25.0%
!!! ATTGATGCTTTAAAGCAAAA+TGG + chr6_3:1913845-1913864 Msa0933440:CDS 25.0%
! TCTTGAATTCACCAAAAAAT+TGG + chr6_3:1912569-1912588 Msa0933440:CDS 25.0%
! AACATGTAGTTTATGTTTGA+TGG - chr6_3:1912687-1912706 None:intergenic 25.0%
! AAGTCTTCTAAATTTATTGG+TGG - chr6_3:1912714-1912733 None:intergenic 25.0%
! GGTAAGTCTTCTAAATTTAT+TGG - chr6_3:1912717-1912736 None:intergenic 25.0%
!! TTCTAATAGGTCTTTATTTG+TGG - chr6_3:1912985-1913004 None:intergenic 25.0%
!! TCTGTTTTGTATGTTTCATT+TGG + chr6_3:1913305-1913324 Msa0933440:CDS 25.0%
!!! AGTTTTTGGAAAGAACAAAA+GGG + chr6_3:1913498-1913517 Msa0933440:CDS 25.0%
! AGACCTAAAGTTAAAGAAAA+TGG + chr6_3:1913719-1913738 Msa0933440:CDS 25.0%
! AGTTAAAGAAAATGGTATAG+TGG + chr6_3:1913727-1913746 Msa0933440:CDS 25.0%
! TGAGGTTGTAAAGAATTTAA+TGG + chr6_3:1913766-1913785 Msa0933440:CDS 25.0%
! GTTGTAAAGAATTTAATGGT+TGG + chr6_3:1913770-1913789 Msa0933440:CDS 25.0%
!!! AATTTAATGGTTGGTGAAAA+AGG + chr6_3:1913779-1913798 Msa0933440:CDS 25.0%
!!! CTTTCAACTTTTTCATTCTT+TGG - chr6_3:1913817-1913836 None:intergenic 25.0%
! CAAAGAATGAAAAAGTTGAA+AGG + chr6_3:1913815-1913834 Msa0933440:CDS 25.0%
!!! ATTGATGCTTTAAAGCAAAA+TGG + chr6_3:1913845-1913864 Msa0933440:CDS 25.0%
TGAATTCAAGAATTGAACGT+AGG - chr6_3:1912560-1912579 None:intergenic 30.0%
!!! GTCTAGATGAACCAATTTTT+TGG - chr6_3:1912583-1912602 None:intergenic 30.0%
AAATTGAAGAACCAAATGTG+GGG - chr6_3:1912632-1912651 None:intergenic 30.0%
CAAATTGAAGAACCAAATGT+GGG - chr6_3:1912633-1912652 None:intergenic 30.0%
CATAAATCGAAGGAATAGAA+CGG - chr6_3:1912782-1912801 None:intergenic 30.0%
TTCAATGCATCATAAATCGA+AGG - chr6_3:1912792-1912811 None:intergenic 30.0%
CACTTCGTTTATTAAACCAT+CGG - chr6_3:1912853-1912872 None:intergenic 30.0%
GATAGATTCTATTTAGCTGA+TGG + chr6_3:1913107-1913126 Msa0933440:CDS 30.0%
CTATTTAGCTGATGGTATAT+TGG + chr6_3:1913115-1913134 Msa0933440:CDS 30.0%
ATTCCTTCTATTTACCCAAT+TGG + chr6_3:1913203-1913222 Msa0933440:CDS 30.0%
! ATGACACATTTTGCACAAAA+GGG - chr6_3:1913229-1913248 None:intergenic 30.0%
CAAAATGTGTCATGTGATAA+TGG + chr6_3:1913236-1913255 Msa0933440:CDS 30.0%
TTGTATGTTTCATTTGGAAG+TGG + chr6_3:1913311-1913330 Msa0933440:CDS 30.0%
CAAATAATTGAGCTTGCATT+TGG + chr6_3:1913353-1913372 Msa0933440:CDS 30.0%
TCAATAACACCGTGTTTATT+TGG - chr6_3:1913422-1913441 None:intergenic 30.0%
! GTTATTGATGATCTTGATAG+TGG + chr6_3:1913434-1913453 Msa0933440:CDS 30.0%
GTTCTTTCCAAAAACTCATT+TGG - chr6_3:1913494-1913513 None:intergenic 30.0%
!! GAGTTTTTGGAAAGAACAAA+AGG + chr6_3:1913497-1913516 Msa0933440:CDS 30.0%
AAGGTTTAGTAGTTCCATAT+TGG + chr6_3:1913522-1913541 Msa0933440:CDS 30.0%
AGGTTTAGTAGTTCCATATT+GGG + chr6_3:1913523-1913542 Msa0933440:CDS 30.0%
TGACCAAGAATTTCAATTTG+TGG - chr6_3:1913551-1913570 None:intergenic 30.0%
ATTCTTGGTCATAGTTCAAT+TGG + chr6_3:1913560-1913579 Msa0933440:CDS 30.0%
!! GATTTTTAACTCATTGTGGT+TGG + chr6_3:1913585-1913604 Msa0933440:CDS 30.0%
!! ACACTTGAAAGTGTTGTAAA+TGG + chr6_3:1913614-1913633 Msa0933440:CDS 30.0%
ATGGAATTCCAATAATAGCA+TGG + chr6_3:1913633-1913652 Msa0933440:CDS 30.0%
TTTCCACTTTAATGCCAAAT+GGG - chr6_3:1913891-1913910 None:intergenic 30.0%
! TTTTCCACTTTAATGCCAAA+TGG - chr6_3:1913892-1913911 None:intergenic 30.0%
GCATTAAAGTGGAAAAGTTT+GGG + chr6_3:1913896-1913915 Msa0933440:CDS 30.0%
TGAATTCAAGAATTGAACGT+AGG - chr6_3:1912560-1912579 None:intergenic 30.0%
!!! GTCTAGATGAACCAATTTTT+TGG - chr6_3:1912583-1912602 None:intergenic 30.0%
AAATTGAAGAACCAAATGTG+GGG - chr6_3:1912632-1912651 None:intergenic 30.0%
CAAATTGAAGAACCAAATGT+GGG - chr6_3:1912633-1912652 None:intergenic 30.0%
CATAAATCGAAGGAATAGAA+CGG - chr6_3:1912782-1912801 None:intergenic 30.0%
TTCAATGCATCATAAATCGA+AGG - chr6_3:1912792-1912811 None:intergenic 30.0%
CACTTCGTTTATTAAACCAT+CGG - chr6_3:1912853-1912872 None:intergenic 30.0%
GATAGATTCTATTTAGCTGA+TGG + chr6_3:1913107-1913126 Msa0933440:CDS 30.0%
CTATTTAGCTGATGGTATAT+TGG + chr6_3:1913115-1913134 Msa0933440:CDS 30.0%
ATTCCTTCTATTTACCCAAT+TGG + chr6_3:1913203-1913222 Msa0933440:CDS 30.0%
! ATGACACATTTTGCACAAAA+GGG - chr6_3:1913229-1913248 None:intergenic 30.0%
CAAAATGTGTCATGTGATAA+TGG + chr6_3:1913236-1913255 Msa0933440:CDS 30.0%
TTGTATGTTTCATTTGGAAG+TGG + chr6_3:1913311-1913330 Msa0933440:CDS 30.0%
CAAATAATTGAGCTTGCATT+TGG + chr6_3:1913353-1913372 Msa0933440:CDS 30.0%
TCAATAACACCGTGTTTATT+TGG - chr6_3:1913422-1913441 None:intergenic 30.0%
! GTTATTGATGATCTTGATAG+TGG + chr6_3:1913434-1913453 Msa0933440:CDS 30.0%
GTTCTTTCCAAAAACTCATT+TGG - chr6_3:1913494-1913513 None:intergenic 30.0%
!! GAGTTTTTGGAAAGAACAAA+AGG + chr6_3:1913497-1913516 Msa0933440:CDS 30.0%
AAGGTTTAGTAGTTCCATAT+TGG + chr6_3:1913522-1913541 Msa0933440:CDS 30.0%
AGGTTTAGTAGTTCCATATT+GGG + chr6_3:1913523-1913542 Msa0933440:CDS 30.0%
TGACCAAGAATTTCAATTTG+TGG - chr6_3:1913551-1913570 None:intergenic 30.0%
ATTCTTGGTCATAGTTCAAT+TGG + chr6_3:1913560-1913579 Msa0933440:CDS 30.0%
!! GATTTTTAACTCATTGTGGT+TGG + chr6_3:1913585-1913604 Msa0933440:CDS 30.0%
!! ACACTTGAAAGTGTTGTAAA+TGG + chr6_3:1913614-1913633 Msa0933440:CDS 30.0%
ATGGAATTCCAATAATAGCA+TGG + chr6_3:1913633-1913652 Msa0933440:CDS 30.0%
TTTCCACTTTAATGCCAAAT+GGG - chr6_3:1913891-1913910 None:intergenic 30.0%
! TTTTCCACTTTAATGCCAAA+TGG - chr6_3:1913892-1913911 None:intergenic 30.0%
GCATTAAAGTGGAAAAGTTT+GGG + chr6_3:1913896-1913915 Msa0933440:CDS 30.0%
! AACTAAGGCTATGTGAGTTT+TGG - chr6_3:1912517-1912536 None:intergenic 35.0%
GTATACAGGAACTGTAACTA+AGG - chr6_3:1912532-1912551 None:intergenic 35.0%
ATTCAAGAATTGAACGTAGG+TGG - chr6_3:1912557-1912576 None:intergenic 35.0%
! TGCATGTGACATGAATGTTT+TGG - chr6_3:1912605-1912624 None:intergenic 35.0%
GCAAATTGAAGAACCAAATG+TGG - chr6_3:1912634-1912653 None:intergenic 35.0%
TGATGGAAGAGTTTCAAAGA+GGG - chr6_3:1912670-1912689 None:intergenic 35.0%
TTGATGGAAGAGTTTCAAAG+AGG - chr6_3:1912671-1912690 None:intergenic 35.0%
GGCTAAAATATCGAGTTTCT+TGG - chr6_3:1912886-1912905 None:intergenic 35.0%
TGTGGAAGGAAAATATGAGT+AGG - chr6_3:1912907-1912926 None:intergenic 35.0%
CAAACAAAGCGATAGTAACA+TGG - chr6_3:1912931-1912950 None:intergenic 35.0%
AGACCTATTAGAACCGTTAA+AGG + chr6_3:1912992-1913011 Msa0933440:CDS 35.0%
! GAACCTTTAACGGTTCTAAT+AGG - chr6_3:1912998-1913017 None:intergenic 35.0%
! TTTTTCTTGCAAGGCTCTTA+TGG - chr6_3:1913171-1913190 None:intergenic 35.0%
! TTCATCCTCTTTTTCTTGCA+AGG - chr6_3:1913180-1913199 None:intergenic 35.0%
TTGCAAGAAAAAGAGGATGA+AGG + chr6_3:1913179-1913198 Msa0933440:CDS 35.0%
! CATGACACATTTTGCACAAA+AGG - chr6_3:1913230-1913249 None:intergenic 35.0%
TATGTTTCATTTGGAAGTGG+TGG + chr6_3:1913314-1913333 Msa0933440:CDS 35.0%
AATTGAGCTTGCATTTGGAT+TGG + chr6_3:1913358-1913377 Msa0933440:CDS 35.0%
TGAGTGGCCAAAACTTTATA+TGG + chr6_3:1913384-1913403 Msa0933440:CDS 35.0%
GAGTGGCCAAAACTTTATAT+GGG + chr6_3:1913385-1913404 Msa0933440:CDS 35.0%
TTAAGGCCACCAAATAAACA+CGG + chr6_3:1913410-1913429 Msa0933440:CDS 35.0%
ATAACACCGTGTTTATTTGG+TGG - chr6_3:1913419-1913438 None:intergenic 35.0%
!! TCTTGATAGTGGTGAATATG+AGG + chr6_3:1913445-1913464 Msa0933440:CDS 35.0%
TTGGAAAGAACAAAAGGGAA+AGG + chr6_3:1913503-1913522 Msa0933440:CDS 35.0%
GCACCACAAATTGAAATTCT+TGG + chr6_3:1913545-1913564 Msa0933440:CDS 35.0%
!! GGTGGATTTTTAACTCATTG+TGG + chr6_3:1913581-1913600 Msa0933440:CDS 35.0%
! ATCTTTTGTTCAGCAAAGAG+TGG - chr6_3:1913659-1913678 None:intergenic 35.0%
!! AATGCAGCTTTGTTAAGTGA+TGG + chr6_3:1913680-1913699 Msa0933440:CDS 35.0%
GTTAAGTGATGGTTTGAAAG+TGG + chr6_3:1913691-1913710 Msa0933440:CDS 35.0%
!! AATGGTTGGTGAAAAAGGAA+AGG + chr6_3:1913784-1913803 Msa0933440:CDS 35.0%
AACAATGACTCTTACCCATT+TGG + chr6_3:1913874-1913893 Msa0933440:CDS 35.0%
TTACCCATTTGGCATTAAAG+TGG + chr6_3:1913885-1913904 Msa0933440:CDS 35.0%
GGCATTAAAGTGGAAAAGTT+TGG + chr6_3:1913895-1913914 Msa0933440:CDS 35.0%
! AAAAGTTTGGGATCACATCA+AGG + chr6_3:1913908-1913927 Msa0933440:CDS 35.0%
! AACTAAGGCTATGTGAGTTT+TGG - chr6_3:1912517-1912536 None:intergenic 35.0%
GTATACAGGAACTGTAACTA+AGG - chr6_3:1912532-1912551 None:intergenic 35.0%
ATTCAAGAATTGAACGTAGG+TGG - chr6_3:1912557-1912576 None:intergenic 35.0%
! TGCATGTGACATGAATGTTT+TGG - chr6_3:1912605-1912624 None:intergenic 35.0%
GCAAATTGAAGAACCAAATG+TGG - chr6_3:1912634-1912653 None:intergenic 35.0%
TGATGGAAGAGTTTCAAAGA+GGG - chr6_3:1912670-1912689 None:intergenic 35.0%
TTGATGGAAGAGTTTCAAAG+AGG - chr6_3:1912671-1912690 None:intergenic 35.0%
GGCTAAAATATCGAGTTTCT+TGG - chr6_3:1912886-1912905 None:intergenic 35.0%
TGTGGAAGGAAAATATGAGT+AGG - chr6_3:1912907-1912926 None:intergenic 35.0%
CAAACAAAGCGATAGTAACA+TGG - chr6_3:1912931-1912950 None:intergenic 35.0%
AGACCTATTAGAACCGTTAA+AGG + chr6_3:1912992-1913011 Msa0933440:CDS 35.0%
! GAACCTTTAACGGTTCTAAT+AGG - chr6_3:1912998-1913017 None:intergenic 35.0%
! TTTTTCTTGCAAGGCTCTTA+TGG - chr6_3:1913171-1913190 None:intergenic 35.0%
! TTCATCCTCTTTTTCTTGCA+AGG - chr6_3:1913180-1913199 None:intergenic 35.0%
TTGCAAGAAAAAGAGGATGA+AGG + chr6_3:1913179-1913198 Msa0933440:CDS 35.0%
! CATGACACATTTTGCACAAA+AGG - chr6_3:1913230-1913249 None:intergenic 35.0%
TATGTTTCATTTGGAAGTGG+TGG + chr6_3:1913314-1913333 Msa0933440:CDS 35.0%
AATTGAGCTTGCATTTGGAT+TGG + chr6_3:1913358-1913377 Msa0933440:CDS 35.0%
TGAGTGGCCAAAACTTTATA+TGG + chr6_3:1913384-1913403 Msa0933440:CDS 35.0%
GAGTGGCCAAAACTTTATAT+GGG + chr6_3:1913385-1913404 Msa0933440:CDS 35.0%
TTAAGGCCACCAAATAAACA+CGG + chr6_3:1913410-1913429 Msa0933440:CDS 35.0%
ATAACACCGTGTTTATTTGG+TGG - chr6_3:1913419-1913438 None:intergenic 35.0%
!! TCTTGATAGTGGTGAATATG+AGG + chr6_3:1913445-1913464 Msa0933440:CDS 35.0%
TTGGAAAGAACAAAAGGGAA+AGG + chr6_3:1913503-1913522 Msa0933440:CDS 35.0%
GCACCACAAATTGAAATTCT+TGG + chr6_3:1913545-1913564 Msa0933440:CDS 35.0%
!! GGTGGATTTTTAACTCATTG+TGG + chr6_3:1913581-1913600 Msa0933440:CDS 35.0%
! ATCTTTTGTTCAGCAAAGAG+TGG - chr6_3:1913659-1913678 None:intergenic 35.0%
!! AATGCAGCTTTGTTAAGTGA+TGG + chr6_3:1913680-1913699 Msa0933440:CDS 35.0%
GTTAAGTGATGGTTTGAAAG+TGG + chr6_3:1913691-1913710 Msa0933440:CDS 35.0%
!! AATGGTTGGTGAAAAAGGAA+AGG + chr6_3:1913784-1913803 Msa0933440:CDS 35.0%
AACAATGACTCTTACCCATT+TGG + chr6_3:1913874-1913893 Msa0933440:CDS 35.0%
TTACCCATTTGGCATTAAAG+TGG + chr6_3:1913885-1913904 Msa0933440:CDS 35.0%
GGCATTAAAGTGGAAAAGTT+TGG + chr6_3:1913895-1913914 Msa0933440:CDS 35.0%
! AAAAGTTTGGGATCACATCA+AGG + chr6_3:1913908-1913927 Msa0933440:CDS 35.0%
ACATGCATTAACCCCACATT+TGG + chr6_3:1912618-1912637 Msa0933440:CDS 40.0%
ATCGCAGGGTGAATATCTTT+CGG - chr6_3:1912738-1912757 None:intergenic 40.0%
AGGAATAGAACGGTGTATAG+TGG - chr6_3:1912772-1912791 None:intergenic 40.0%
! CTTGTTGCAGTTATTTCCGA+TGG + chr6_3:1912834-1912853 Msa0933440:CDS 40.0%
GATAGTAACATGGTTGTGGA+AGG - chr6_3:1912921-1912940 None:intergenic 40.0%
AAGCGATAGTAACATGGTTG+TGG - chr6_3:1912925-1912944 None:intergenic 40.0%
TTAGAACCGTTAAAGGTTCC+TGG + chr6_3:1912999-1913018 Msa0933440:CDS 40.0%
ATGCAACCAGGAACCTTTAA+CGG - chr6_3:1913008-1913027 None:intergenic 40.0%
GGGAGATCAGTACTATGAAT+CGG - chr6_3:1913032-1913051 None:intergenic 40.0%
CACTTGATCGATCAAGCATA+GGG - chr6_3:1913058-1913077 None:intergenic 40.0%
TCACTTGATCGATCAAGCAT+AGG - chr6_3:1913059-1913078 None:intergenic 40.0%
AAGAGCCTTGCAAGAAAAAG+AGG + chr6_3:1913172-1913191 Msa0933440:CDS 40.0%
TTTGCACAAAAGGGCCAATT+GGG - chr6_3:1913220-1913239 None:intergenic 40.0%
! TTTTGCACAAAAGGGCCAAT+TGG - chr6_3:1913221-1913240 None:intergenic 40.0%
! GCATTTGGATTGGAATTGAG+TGG + chr6_3:1913368-1913387 Msa0933440:CDS 40.0%
TCAATTTGTGGTGCCCAATA+TGG - chr6_3:1913539-1913558 None:intergenic 40.0%
CTTGGTCATAGTTCAATTGG+TGG + chr6_3:1913563-1913582 Msa0933440:CDS 40.0%
AAGAGTGGCCATGCTATTAT+TGG - chr6_3:1913644-1913663 None:intergenic 40.0%
ACATGCATTAACCCCACATT+TGG + chr6_3:1912618-1912637 Msa0933440:CDS 40.0%
ATCGCAGGGTGAATATCTTT+CGG - chr6_3:1912738-1912757 None:intergenic 40.0%
AGGAATAGAACGGTGTATAG+TGG - chr6_3:1912772-1912791 None:intergenic 40.0%
! CTTGTTGCAGTTATTTCCGA+TGG + chr6_3:1912834-1912853 Msa0933440:CDS 40.0%
GATAGTAACATGGTTGTGGA+AGG - chr6_3:1912921-1912940 None:intergenic 40.0%
AAGCGATAGTAACATGGTTG+TGG - chr6_3:1912925-1912944 None:intergenic 40.0%
TTAGAACCGTTAAAGGTTCC+TGG + chr6_3:1912999-1913018 Msa0933440:CDS 40.0%
ATGCAACCAGGAACCTTTAA+CGG - chr6_3:1913008-1913027 None:intergenic 40.0%
GGGAGATCAGTACTATGAAT+CGG - chr6_3:1913032-1913051 None:intergenic 40.0%
CACTTGATCGATCAAGCATA+GGG - chr6_3:1913058-1913077 None:intergenic 40.0%
TCACTTGATCGATCAAGCAT+AGG - chr6_3:1913059-1913078 None:intergenic 40.0%
AAGAGCCTTGCAAGAAAAAG+AGG + chr6_3:1913172-1913191 Msa0933440:CDS 40.0%
TTTGCACAAAAGGGCCAATT+GGG - chr6_3:1913220-1913239 None:intergenic 40.0%
! TTTTGCACAAAAGGGCCAAT+TGG - chr6_3:1913221-1913240 None:intergenic 40.0%
! GCATTTGGATTGGAATTGAG+TGG + chr6_3:1913368-1913387 Msa0933440:CDS 40.0%
TCAATTTGTGGTGCCCAATA+TGG - chr6_3:1913539-1913558 None:intergenic 40.0%
CTTGGTCATAGTTCAATTGG+TGG + chr6_3:1913563-1913582 Msa0933440:CDS 40.0%
AAGAGTGGCCATGCTATTAT+TGG - chr6_3:1913644-1913663 None:intergenic 40.0%
TATTCACCCTGCGATCAAAG+TGG + chr6_3:1912743-1912762 Msa0933440:CDS 45.0%
CTATGAATCGGTATGCAACC+AGG - chr6_3:1913020-1913039 None:intergenic 45.0%
ATCGATCAAGCATAGGGTCT+GGG - chr6_3:1913052-1913071 None:intergenic 45.0%
GGGCCAATTGGGTAAATAGA+AGG - chr6_3:1913209-1913228 None:intergenic 45.0%
GGAAAGAGAAGAGATAGCTG+AGG + chr6_3:1913748-1913767 Msa0933440:CDS 45.0%
TATTCACCCTGCGATCAAAG+TGG + chr6_3:1912743-1912762 Msa0933440:CDS 45.0%
CTATGAATCGGTATGCAACC+AGG - chr6_3:1913020-1913039 None:intergenic 45.0%
ATCGATCAAGCATAGGGTCT+GGG - chr6_3:1913052-1913071 None:intergenic 45.0%
GGGCCAATTGGGTAAATAGA+AGG - chr6_3:1913209-1913228 None:intergenic 45.0%
GGAAAGAGAAGAGATAGCTG+AGG + chr6_3:1913748-1913767 Msa0933440:CDS 45.0%
GAACGTAGGTGGCTGTATAC+AGG - chr6_3:1912546-1912565 None:intergenic 50.0%
TGGCTTCCACTTTGATCGCA+GGG - chr6_3:1912752-1912771 None:intergenic 50.0%
GATCGATCAAGCATAGGGTC+TGG - chr6_3:1913053-1913072 None:intergenic 50.0%
GAACGTAGGTGGCTGTATAC+AGG - chr6_3:1912546-1912565 None:intergenic 50.0%
TGGCTTCCACTTTGATCGCA+GGG - chr6_3:1912752-1912771 None:intergenic 50.0%
GATCGATCAAGCATAGGGTC+TGG - chr6_3:1913053-1913072 None:intergenic 50.0%
GTGGCTTCCACTTTGATCGC+AGG - chr6_3:1912753-1912772 None:intergenic 55.0%
GTGGCTTCCACTTTGATCGC+AGG - chr6_3:1912753-1912772 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 1912507 1913937 1912507 ID=Msa0933440;Name=Msa0933440
chr6_3 mRNA 1912507 1913937 1912507 ID=Msa0933440-mRNA-1;Parent=Msa0933440;Name=Msa0933440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|476
chr6_3 exon 1912507 1913937 1912507 ID=Msa0933440-mRNA-1:exon:743;Parent=Msa0933440-mRNA-1
chr6_3 CDS 1912507 1913937 1912507 ID=Msa0933440-mRNA-1:cds;Parent=Msa0933440-mRNA-1
Gene Sequence

>Msa0933440

ATGGAGACCAAAACTCACATAGCCTTAGTTACAGTTCCTGTATACAGCCACCTACGTTCAATTCTTGAATTCACCAAAAAATTGGTTCATCTAGACCAAAACATTCATGTCACATGCATTAACCCCACATTTGGTTCTTCAATTTGCAACAATGTCAAATCCCTCTTTGAAACTCTTCCATCAAACATAAACTACATGTTTCTTCCACCAATAAATTTAGAAGACTTACCGAAAGATATTCACCCTGCGATCAAAGTGGAAGCCACTATACACCGTTCTATTCCTTCGATTTATGATGCATTGAACACGTTACATTCTAGTTCAAAACTTGTTGCAGTTATTTCCGATGGTTTAATAAACGAAGTGTTGCGATTAACCAAGAAACTCGATATTTTAGCCTACTCATATTTTCCTTCCACAACCATGTTACTATCGCTTTGTTTGCATTCTTCAAATCTAGACAAAACAATTTCTTCCACAAATAAAGACCTATTAGAACCGTTAAAGGTTCCTGGTTGCATACCGATTCATAGTACTGATCTCCCAGACCCTATGCTTGATCGATCAAGTGAAGCGTACAAGATTTTTCTTGAAGCTAATGATAGATTCTATTTAGCTGATGGTATATTGGTTAATAGTTTTCTTGCGCTTGAAGAAACTACCATAAGAGCCTTGCAAGAAAAAGAGGATGAAGGAATTCCTTCTATTTACCCAATTGGCCCTTTTGTGCAAAATGTGTCATGTGATAATGGAAGTGATTTTGAATATTTGAGATTTTTGGACAAGCAAGAAAGAAAATCTGTTTTGTATGTTTCATTTGGAAGTGGTGGAACACTTTTTCATGAACAAATAATTGAGCTTGCATTTGGATTGGAATTGAGTGGCCAAAACTTTATATGGGTTTTAAGGCCACCAAATAAACACGGTGTTATTGATGATCTTGATAGTGGTGAATATGAGGATGATATTCTTTTTAATTTTTTACCAAATGAGTTTTTGGAAAGAACAAAAGGGAAAGGTTTAGTAGTTCCATATTGGGCACCACAAATTGAAATTCTTGGTCATAGTTCAATTGGTGGATTTTTAACTCATTGTGGTTGGAATTCAACACTTGAAAGTGTTGTAAATGGAATTCCAATAATAGCATGGCCACTCTTTGCTGAACAAAAGATGAATGCAGCTTTGTTAAGTGATGGTTTGAAAGTGGCTATCAGACCTAAAGTTAAAGAAAATGGTATAGTGGAAAGAGAAGAGATAGCTGAGGTTGTAAAGAATTTAATGGTTGGTGAAAAAGGAAAGGAAATTCACCAAAGAATGAAAAAGTTGAAAGGTAATGCTATTGATGCTTTAAAGCAAAATGGATCTTCAACAATGACTCTTACCCATTTGGCATTAAAGTGGAAAAGTTTGGGATCACATCAAGGAACTTAA

Protein sequence

>Msa0933440

METKTHIALVTVPVYSHLRSILEFTKKLVHLDQNIHVTCINPTFGSSICNNVKSLFETLPSNINYMFLPPINLEDLPKDIHPAIKVEATIHRSIPSIYDALNTLHSSSKLVAVISDGLINEVLRLTKKLDILAYSYFPSTTMLLSLCLHSSNLDKTISSTNKDLLEPLKVPGCIPIHSTDLPDPMLDRSSEAYKIFLEANDRFYLADGILVNSFLALEETTIRALQEKEDEGIPSIYPIGPFVQNVSCDNGSDFEYLRFLDKQERKSVLYVSFGSGGTLFHEQIIELAFGLELSGQNFIWVLRPPNKHGVIDDLDSGEYEDDILFNFLPNEFLERTKGKGLVVPYWAPQIEILGHSSIGGFLTHCGWNSTLESVVNGIPIIAWPLFAEQKMNAALLSDGLKVAIRPKVKENGIVEREEIAEVVKNLMVGEKGKEIHQRMKKLKGNAIDALKQNGSSTMTLTHLALKWKSLGSHQGT*