AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0356460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0356460 MtrunA17_Chr3g0093111 84.516 310 36 2 17 314 1 310 0.0 521
Msa0356460 MtrunA17_Chr2g0282741 44.412 340 145 4 16 314 2 338 5.81e-100 297
Msa0356460 MtrunA17_Chr2g0324921 45.210 334 147 4 16 314 2 334 1.42e-97 291
Msa0356460 MtrunA17_Chr4g0006391 42.478 339 153 3 16 314 2 338 1.87e-97 291
Msa0356460 MtrunA17_Chr4g0040501 41.329 346 152 5 16 314 2 343 6.56e-93 280
Msa0356460 MtrunA17_Chr3g0138471 41.543 337 146 4 16 314 2 325 1.13e-86 263
Msa0356460 MtrunA17_Chr2g0282761 40.173 346 146 7 16 308 2 339 4.45e-81 249
Msa0356460 MtrunA17_Chr5g0415751 49.007 151 76 1 165 314 10 160 2.73e-47 156
Msa0356460 MtrunA17_Chr2g0277721 40.437 183 107 2 135 315 78 260 1.98e-40 142
Msa0356460 MtrunA17_Chr7g0269841 29.674 337 176 7 19 314 27 343 1.24e-38 139
Msa0356460 MtrunA17_Chr3g0124801 38.418 177 108 1 140 315 116 292 1.52e-38 138
Msa0356460 MtrunA17_Chr3g0091351 64.000 100 35 1 200 298 2 101 3.24e-35 123
Msa0356460 MtrunA17_Chr8g0334811 26.431 367 180 10 19 314 15 362 7.86e-34 128
Msa0356460 MtrunA17_Chr2g0322181 31.915 141 94 1 176 314 218 358 2.09e-20 90.9
Msa0356460 MtrunA17_Chr3g0091361 50.000 84 40 2 15 98 2 83 1.12e-19 85.5
Msa0356460 MtrunA17_Chr4g0025401 31.915 141 94 1 176 314 216 356 2.07e-19 88.2
Msa0356460 MtrunA17_Chr5g0415731 32.911 158 61 4 18 166 5 126 7.13e-16 73.6
Msa0356460 MtrunA17_Chr6g0478651 34.667 150 85 5 18 163 68 208 6.71e-15 75.1
Msa0356460 MtrunA17_Chr3g0123861 46.575 73 36 1 18 90 82 151 1.04e-13 71.2
Msa0356460 MtrunA17_Chr2g0333221 36.667 120 57 4 9 128 61 161 4.27e-13 69.7
Msa0356460 MtrunA17_Chr4g0021141 43.056 72 39 1 14 85 18 87 1.16e-12 64.3
Msa0356460 MtrunA17_Chr3g0087741 22.443 352 207 9 9 307 80 418 2.22e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0356460 AT3G47940.1 43.909 353 136 5 16 314 2 346 4.01e-97 291
Msa0356460 AT2G20560.1 42.604 338 152 5 16 314 2 336 1.14e-96 289
Msa0356460 AT3G08910.1 45.988 324 145 4 16 314 2 320 8.96e-96 286
Msa0356460 AT4G28480.1 42.693 349 147 7 16 314 2 347 2.62e-94 283
Msa0356460 AT1G59725.1 44.343 327 154 2 16 314 2 328 4.29e-94 282
Msa0356460 AT5G01390.1 43.582 335 150 4 16 314 2 333 5.99e-94 282
Msa0356460 AT5G25530.2 43.188 345 141 5 16 314 2 337 2.23e-92 278
Msa0356460 AT5G25530.1 42.210 353 141 6 16 314 2 345 2.33e-89 271
Msa0356460 AT1G10350.1 41.210 347 154 5 16 314 2 346 6.03e-89 270
Msa0356460 AT4G28480.2 45.066 304 146 7 16 314 2 289 5.51e-86 260
Msa0356460 AT5G01390.2 43.813 299 143 4 16 314 2 275 1.01e-82 251
Msa0356460 AT2G20550.1 49.444 180 91 0 135 314 104 283 2.50e-61 197
Msa0356460 AT2G20550.2 49.444 180 91 0 135 314 104 283 2.50e-61 197
Msa0356460 AT5G01390.3 38.000 300 120 6 16 314 2 236 8.29e-57 184
Msa0356460 AT3G62600.1 29.745 353 189 9 4 314 10 345 1.88e-38 139
Msa0356460 AT1G11040.1 34.703 219 139 1 97 315 219 433 6.62e-38 140
Msa0356460 AT1G44160.1 39.665 179 108 0 137 315 176 354 7.67e-38 138
Msa0356460 AT5G01390.4 36.458 192 83 4 17 172 3 191 1.81e-32 120
Msa0356460 AT3G44110.1 34.043 141 91 1 176 314 218 358 5.29e-23 99.0
Msa0356460 AT5G22060.1 34.043 141 91 1 176 314 219 359 7.21e-22 95.5
Msa0356460 AT3G44110.2 32.432 111 73 1 176 284 218 328 1.16e-15 77.0
Msa0356460 AT4G39960.1 43.421 76 40 1 18 93 85 157 1.97e-13 70.9
Msa0356460 AT4G39960.2 43.421 76 40 1 18 93 85 157 1.97e-13 70.9
Msa0356460 AT2G22360.1 44.872 78 38 2 18 95 86 158 4.37e-13 69.7
Msa0356460 AT3G17830.1 45.205 73 37 1 18 90 63 132 7.41e-13 69.3
Msa0356460 AT1G80030.4 41.379 87 46 2 16 100 73 156 1.28e-12 68.6
Msa0356460 AT1G80030.2 41.379 87 46 2 16 100 73 156 1.33e-12 68.6
Msa0356460 AT1G80030.3 41.379 87 46 2 16 100 73 156 1.33e-12 68.6
Msa0356460 AT1G80030.1 41.379 87 46 2 16 100 73 156 1.33e-12 68.6
Msa0356460 AT2G41000.1 44.928 69 35 1 17 82 2 70 1.58e-12 65.5
Msa0356460 AT2G41000.2 44.928 69 35 1 17 82 2 70 3.80e-12 65.1
Msa0356460 AT2G35720.1 38.202 89 54 1 15 102 12 100 4.90e-12 67.0
Msa0356460 AT5G16650.1 41.667 72 40 1 14 85 7 76 3.84e-11 60.5
Msa0356460 AT5G16650.2 41.667 72 40 1 14 85 7 76 8.58e-11 60.1

Find 84 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTGGTTGTTTGGTTAT+TGG 0.105856 3_1:-35526492 None:intergenic
AGTCTGTTTATTTACTTATT+AGG 0.123589 3_1:+35526819 Msa0356460:three_prime_UTR
GTCTGTTTATTTACTTATTA+GGG 0.228541 3_1:+35526820 Msa0356460:three_prime_UTR
CATCTGCCACAGTTATCTTT+TGG 0.254427 3_1:-35526356 None:intergenic
GGTTATTGGCATCCCTTCAT+TGG 0.296706 3_1:-35526478 None:intergenic
TCCCTTCCTCCCTGGTTGTT+TGG 0.304363 3_1:-35526499 None:intergenic
CTTGTCACCCTTCTCTTTGA+AGG 0.307168 3_1:-35526241 None:intergenic
GGAAAGAGAACAAGGTGATT+TGG 0.319382 3_1:-35522625 None:intergenic
GTTATTGGCATCCCTTCATT+GGG 0.325745 3_1:-35526477 None:intergenic
AACATTGGAAATCCCTGCTT+TGG 0.339373 3_1:+35526392 Msa0356460:CDS
CAAAACAATGTTCTCACAAT+AGG 0.361461 3_1:-35523042 None:intergenic
AGGAATAGTGAGTTAGTGAT+AGG 0.395488 3_1:+35526703 Msa0356460:three_prime_UTR
GGGACTTTGTGCTCATAGTC+AGG 0.400832 3_1:-35526456 None:intergenic
GAATACCAGGGAAGCATACT+TGG 0.402833 3_1:+35526658 Msa0356460:three_prime_UTR
GGTGAAGAAGGCCTTCAATA+TGG 0.417472 3_1:+35522877 Msa0356460:CDS
TGCTGAGGAGTTAACCTTGA+GGG 0.426712 3_1:-35526552 None:intergenic
GAAGGCCTTCTTCACCGTAT+TGG 0.430873 3_1:-35522870 None:intergenic
TAGTCAGGTGTGACTACATT+TGG 0.447989 3_1:-35526441 None:intergenic
GTGTGACTACATTTGGCAAC+TGG 0.449709 3_1:-35526434 None:intergenic
AGCATAATTAACCACGGTTC+TGG 0.455043 3_1:-35523112 None:intergenic
CACCACATGCTCGTTATACT+AGG 0.458174 3_1:+35526310 Msa0356460:CDS
TGTACAATGGGAATAGTAGA+AGG 0.464128 3_1:+35523079 Msa0356460:CDS
TTTCAGGTGGGTGTTTGTCT+GGG 0.464672 3_1:-35522762 None:intergenic
TTTAAAGTTCCCTTCCTCCC+TGG 0.465519 3_1:-35526507 None:intergenic
ATGGTGGTGCCGCTCCTCCC+CGG 0.465593 3_1:+35522896 Msa0356460:CDS
AGAACCGTGGTTAATTATGC+TGG 0.469693 3_1:+35523114 Msa0356460:CDS
AGAACAAGAAGAAGAATGCC+GGG 0.473024 3_1:-35522914 None:intergenic
ATGTGAAGGGCTAGAATACC+AGG 0.478448 3_1:+35526645 Msa0356460:three_prime_UTR
AAATCCCTGCTTTGGATGGA+AGG 0.492818 3_1:+35526400 Msa0356460:CDS
TAAAACGTTGTAGTAATCCA+TGG 0.496047 3_1:-35522671 None:intergenic
GAGAAGGGTGACAAGAAGCC+TGG 0.498438 3_1:+35526249 Msa0356460:CDS
TTACGATATTCTCAGTAATC+CGG 0.499349 3_1:+35522828 Msa0356460:CDS
TTGGAAATCCCTGCTTTGGA+TGG 0.500318 3_1:+35526396 Msa0356460:CDS
GAGCACAAAGTCCCCAATGA+AGG 0.506226 3_1:+35526465 Msa0356460:CDS
AGAATCCTTCCATCCAAAGC+AGG 0.506880 3_1:-35526405 None:intergenic
GTCTTGAAGAATTGTACAAT+GGG 0.507150 3_1:+35523067 Msa0356460:CDS
GTATAGTAATATTGAGGAGG+AGG 0.510874 3_1:+35526170 Msa0356460:CDS
CATTCTTCTTCTTGTTCTCG+CGG 0.515285 3_1:+35522919 Msa0356460:CDS
TTTCAGGTATAGTAATATTG+AGG 0.516243 3_1:+35526164 Msa0356460:intron
AAAACCCAAGTATGCTTCCC+TGG 0.516917 3_1:-35526663 None:intergenic
ATATCAGCTGGGATGATGCC+AGG 0.518154 3_1:-35526267 None:intergenic
TATGACCAATACGGTGAAGA+AGG 0.519533 3_1:+35522865 Msa0356460:CDS
AACCAAACAACCAGGGAGGA+AGG 0.520867 3_1:+35526497 Msa0356460:CDS
CGAGGATTGTACTGATACGC+TGG 0.521499 3_1:-35522955 None:intergenic
TTGACTATTGATGTAAAAGC+TGG 0.525780 3_1:+35526195 Msa0356460:CDS
CATGCTCGTTATACTAGGAA+TGG 0.526336 3_1:+35526315 Msa0356460:CDS
CGGAAAATCTATGACCAATA+CGG 0.527877 3_1:+35522856 Msa0356460:CDS
GAGAACAAGAAGAAGAATGC+CGG 0.531740 3_1:-35522915 None:intergenic
TTGTACTGATACGCTGGAGA+TGG 0.534150 3_1:-35522949 None:intergenic
TGCTCTCACAAATAAAACAT+TGG 0.539708 3_1:+35526377 Msa0356460:CDS
AGAAGAATGCCGGGGAGGAG+CGG 0.541103 3_1:-35522905 None:intergenic
GAGCGGCACCACCATATTGA+AGG 0.549866 3_1:-35522888 None:intergenic
ATTCTTCTTCTTGTTCTCGC+GGG 0.551621 3_1:+35522920 Msa0356460:CDS
GGATTGCACTGACAGTGTAA+TGG 0.554005 3_1:-35522646 None:intergenic
ACCAAACAACCAGGGAGGAA+GGG 0.555678 3_1:+35526498 Msa0356460:CDS
CTGTCAGTGCAATCCATCCA+TGG 0.561575 3_1:+35522654 Msa0356460:CDS
AAAGGTTACCTTCAAAGAGA+AGG 0.563765 3_1:+35526233 Msa0356460:CDS
CAGGTATAGTAATATTGAGG+AGG 0.567400 3_1:+35526167 Msa0356460:intron
AGCACAAAGTCCCCAATGAA+GGG 0.568803 3_1:+35526466 Msa0356460:CDS
AGTCTTGAAGAATTGTACAA+TGG 0.574169 3_1:+35523066 Msa0356460:CDS
AAGGTTACCTTCAAAGAGAA+GGG 0.588105 3_1:+35526234 Msa0356460:CDS
GAACCGTGGTTAATTATGCT+GGG 0.592285 3_1:+35523115 Msa0356460:CDS
AATACCAGGGAAGCATACTT+GGG 0.597707 3_1:+35526659 Msa0356460:three_prime_UTR
TCTGTTTATTTACTTATTAG+GGG 0.600997 3_1:+35526821 Msa0356460:three_prime_UTR
CAAGAAGAAGAATGCCGGGG+AGG 0.603980 3_1:-35522910 None:intergenic
CTATTGATGTAAAAGCTGGA+TGG 0.604030 3_1:+35526199 Msa0356460:CDS
TTGACATCAAGTATCCCTCA+AGG 0.608887 3_1:+35526538 Msa0356460:CDS
TTCTCAGTAATCCGGTAAAG+CGG 0.617611 3_1:+35522836 Msa0356460:CDS
GAATCCTTCCATCCAAAGCA+GGG 0.617620 3_1:-35526404 None:intergenic
ATGCCAATAACCAAACAACC+AGG 0.618075 3_1:+35526489 Msa0356460:CDS
ACGTTGTAGTAATCCATGGA+TGG 0.620179 3_1:-35522667 None:intergenic
TTATTGGCATCCCTTCATTG+GGG 0.630031 3_1:-35526476 None:intergenic
AGTGTAATGGAAAGAGAACA+AGG 0.635085 3_1:-35522633 None:intergenic
TTCCTAGTATAACGAGCATG+TGG 0.663194 3_1:-35526312 None:intergenic
TAAATATCATCAGCAGAGCG+AGG 0.666127 3_1:-35522973 None:intergenic
GAACAAGAAGAAGAATGCCG+GGG 0.669092 3_1:-35522913 None:intergenic
GAAGAAGGCCTTCAATATGG+TGG 0.678088 3_1:+35522880 Msa0356460:CDS
TTGCTGAGGAGTTAACCTTG+AGG 0.687155 3_1:-35526553 None:intergenic
GATAAAGATTACCAGAACCG+TGG 0.703413 3_1:+35523101 Msa0356460:CDS
TGCCAATAACCAAACAACCA+GGG 0.704089 3_1:+35526490 Msa0356460:CDS
TTACCCAGCATAATTAACCA+CGG 0.705403 3_1:-35523118 None:intergenic
GATTATCCAAAAGATAACTG+TGG 0.729370 3_1:+35526350 Msa0356460:CDS
TGTGAAGGGCTAGAATACCA+GGG 0.742349 3_1:+35526646 Msa0356460:three_prime_UTR
CAATAACCAAACAACCAGGG+AGG 0.753546 3_1:+35526493 Msa0356460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAATAAAAAAAAGTT+AGG - chr3_1:35523160-35523179 None:intergenic 10.0%
!! TAATTACATAAATTTGTATT+TGG - chr3_1:35523515-35523534 None:intergenic 10.0%
!! AAATACAAATTTATGTAATT+AGG + chr3_1:35523514-35523533 Msa0356460:intron 10.0%
!! TATTAATAATAGATCAATAA+TGG + chr3_1:35525411-35525430 Msa0356460:intron 10.0%
!!! ATTTTTGTTGTAATTGATTA+GGG + chr3_1:35523217-35523236 Msa0356460:intron 15.0%
!! AAAAAAACATAAACCAAAAA+GGG - chr3_1:35523325-35523344 None:intergenic 15.0%
!! AAAAAAAACATAAACCAAAA+AGG - chr3_1:35523326-35523345 None:intergenic 15.0%
!! AATTGATAGAAAATCAAAAA+CGG - chr3_1:35524531-35524550 None:intergenic 15.0%
!! AATAATAGTGTAGTAATATA+TGG + chr3_1:35525469-35525488 Msa0356460:intron 15.0%
!!! GATTAGTAATTTTGTTTATT+GGG - chr3_1:35525860-35525879 None:intergenic 15.0%
!!! TGATTAGTAATTTTGTTTAT+TGG - chr3_1:35525861-35525880 None:intergenic 15.0%
!!! TTTTCTTTTGATTAAACTTA+TGG + chr3_1:35526750-35526769 Msa0356460:three_prime_UTR 15.0%
!!! GATTTTTGTTGTAATTGATT+AGG + chr3_1:35523216-35523235 Msa0356460:intron 20.0%
!! ATTCATGTTTATCAAATTGA+AGG + chr3_1:35523293-35523312 Msa0356460:intron 20.0%
!! TTCATGTTTATCAAATTGAA+GGG + chr3_1:35523294-35523313 Msa0356460:intron 20.0%
!! AAAAAACATAAACCAAAAAG+GGG - chr3_1:35523324-35523343 None:intergenic 20.0%
!! TCAACAAATCATAACTATAA+TGG + chr3_1:35523358-35523377 Msa0356460:intron 20.0%
!! AATTGAAACTACAAATTATC+AGG + chr3_1:35523393-35523412 Msa0356460:intron 20.0%
!! ATTGAAACTACAAATTATCA+GGG + chr3_1:35523394-35523413 Msa0356460:intron 20.0%
!! TGTATTTGGATTATCAATAT+GGG - chr3_1:35523501-35523520 None:intergenic 20.0%
!! TTGTATTTGGATTATCAATA+TGG - chr3_1:35523502-35523521 None:intergenic 20.0%
!! AGTGTTAAACATAACTATAA+TGG + chr3_1:35523612-35523631 Msa0356460:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+TGG - chr3_1:35523831-35523850 None:intergenic 20.0%
!! ATATCTGATTCTAATATGAT+AGG + chr3_1:35524357-35524376 Msa0356460:intron 20.0%
!!! AAATAACTAAACTGTTTTCA+GGG - chr3_1:35524677-35524696 None:intergenic 20.0%
!!! AAAATAACTAAACTGTTTTC+AGG - chr3_1:35524678-35524697 None:intergenic 20.0%
!!! TAGTTAATTTGTCACTTTTT+TGG + chr3_1:35524789-35524808 Msa0356460:intron 20.0%
!!! TTGTTTTTTTTGGCTAAAAT+CGG - chr3_1:35524987-35525006 None:intergenic 20.0%
!! CAAAAAAATAGATGAAGAAA+AGG + chr3_1:35525053-35525072 Msa0356460:intron 20.0%
!! TATAAACAAAATGTACACAA+TGG + chr3_1:35525291-35525310 Msa0356460:intron 20.0%
!! AATATTACTATACCTGAAAT+GGG - chr3_1:35526163-35526182 None:intergenic 20.0%
!!! GTTGAATTGTGTAAATTTTT+GGG + chr3_1:35526601-35526620 Msa0356460:exon 20.0%
!!! TTGAATTGTGTAAATTTTTG+GGG + chr3_1:35526602-35526621 Msa0356460:exon 20.0%
!!! ATTTTGAATATATGATGTGA+AGG + chr3_1:35526631-35526650 Msa0356460:three_prime_UTR 20.0%
!!! TTTTGAATATATGATGTGAA+GGG + chr3_1:35526632-35526651 Msa0356460:three_prime_UTR 20.0%
!! AAAAACTAGCTAGTAAAATT+TGG - chr3_1:35526734-35526753 None:intergenic 20.0%
! ATCAGGGTTAATTAAGTAAA+TGG + chr3_1:35523410-35523429 Msa0356460:intron 25.0%
!! GGACTAAACACTAAATATTT+TGG - chr3_1:35523449-35523468 None:intergenic 25.0%
! GTCCTACAAAATACAAAATT+CGG + chr3_1:35523465-35523484 Msa0356460:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG + chr3_1:35523856-35523875 Msa0356460:intron 25.0%
!! GAATATAAGTATTGCATATC+AGG - chr3_1:35524292-35524311 None:intergenic 25.0%
! TGCAATACTTATATTCTAGA+TGG + chr3_1:35524296-35524315 Msa0356460:intron 25.0%
! CTAATATGATAGGATAGTAT+AGG + chr3_1:35524367-35524386 Msa0356460:intron 25.0%
! TTGATTCAAAGATTATTTCC+AGG + chr3_1:35524489-35524508 Msa0356460:intron 25.0%
! AATCTTACTGAAAGTTTCAT+TGG + chr3_1:35524583-35524602 Msa0356460:intron 25.0%
!!! TTGTGCTTACTTTTTAGTTA+AGG + chr3_1:35524618-35524637 Msa0356460:intron 25.0%
!!! CTTTTTAGTTAAGGTTTAAG+TGG + chr3_1:35524627-35524646 Msa0356460:intron 25.0%
!!! ACTTTGTTTCCTATTTTTCT+AGG - chr3_1:35524721-35524740 None:intergenic 25.0%
! CAAATTAACTACAAACTTGA+GGG - chr3_1:35524780-35524799 None:intergenic 25.0%
! ACAAATTAACTACAAACTTG+AGG - chr3_1:35524781-35524800 None:intergenic 25.0%
!!! TGTCACTTTTTTGGTATATT+TGG + chr3_1:35524798-35524817 Msa0356460:intron 25.0%
! GCCAAAAAAAACAAAAAAAG+CGG + chr3_1:35524993-35525012 Msa0356460:intron 25.0%
!!! ACCGCTTTTTTTGTTTTTTT+TGG - chr3_1:35524997-35525016 None:intergenic 25.0%
! CAATAAGATACTATGAAAGT+GGG - chr3_1:35525181-35525200 None:intergenic 25.0%
! CACTTTCATAGTATCTTATT+GGG + chr3_1:35525180-35525199 Msa0356460:intron 25.0%
! TGAAAAAAAAAAGACCCAAT+AGG - chr3_1:35525211-35525230 None:intergenic 25.0%
! ATCAAAAAAGAAGAATGCAT+GGG - chr3_1:35525263-35525282 None:intergenic 25.0%
!!! TTATTTTATTGCTCAAGTAG+TGG - chr3_1:35525454-35525473 None:intergenic 25.0%
!!! TGAATTTTGAGTGATGTTTA+AGG + chr3_1:35525508-35525527 Msa0356460:intron 25.0%
!!! TAGTAATTTTGTTTATTGGG+TGG - chr3_1:35525857-35525876 None:intergenic 25.0%
! ATAATCTCATACAAACTGTA+TGG - chr3_1:35525949-35525968 None:intergenic 25.0%
! ACCAATTTATCTGTTATAGT+AGG + chr3_1:35525975-35525994 Msa0356460:intron 25.0%
! TCCTACTATAACAGATAAAT+TGG - chr3_1:35525979-35525998 None:intergenic 25.0%
! CTCTATTGAATAGAAGAATT+TGG + chr3_1:35526020-35526039 Msa0356460:intron 25.0%
! TTGAATAGAAGAATTTGGAA+AGG + chr3_1:35526025-35526044 Msa0356460:intron 25.0%
! CAATATTACTATACCTGAAA+TGG - chr3_1:35526164-35526183 None:intergenic 25.0%
!! TTTCAGGTATAGTAATATTG+AGG + chr3_1:35526164-35526183 Msa0356460:intron 25.0%
! TCACAAAAATAATATCAGCT+GGG - chr3_1:35526281-35526300 None:intergenic 25.0%
! ATCACAAAAATAATATCAGC+TGG - chr3_1:35526282-35526301 None:intergenic 25.0%
!! CGTTGAATTGTGTAAATTTT+TGG + chr3_1:35526600-35526619 Msa0356460:exon 25.0%
!!! AACTTATGGTTTTTGAGTTT+TGG + chr3_1:35526764-35526783 Msa0356460:three_prime_UTR 25.0%
TAAAACGTTGTAGTAATCCA+TGG - chr3_1:35522674-35522693 None:intergenic 30.0%
TTACGATATTCTCAGTAATC+CGG + chr3_1:35522828-35522847 Msa0356460:CDS 30.0%
!! TGAGAATAGTTTTGCAAAGA+AGG + chr3_1:35523014-35523033 Msa0356460:CDS 30.0%
CAAAACAATGTTCTCACAAT+AGG - chr3_1:35523045-35523064 None:intergenic 30.0%
AGTCTTGAAGAATTGTACAA+TGG + chr3_1:35523066-35523085 Msa0356460:CDS 30.0%
GTCTTGAAGAATTGTACAAT+GGG + chr3_1:35523067-35523086 Msa0356460:CDS 30.0%
GTTGTAATTGATTAGGGTTT+AGG + chr3_1:35523223-35523242 Msa0356460:intron 30.0%
! GTCCGAATTTTGTATTTTGT+AGG - chr3_1:35523470-35523489 None:intergenic 30.0%
TCAATAACTCCAAGCTAAAA+GGG - chr3_1:35523574-35523593 None:intergenic 30.0%
ATCAATAACTCCAAGCTAAA+AGG - chr3_1:35523575-35523594 None:intergenic 30.0%
ATCCCAATTTCATAAACTTG+GGG - chr3_1:35523689-35523708 None:intergenic 30.0%
GATCCCAATTTCATAAACTT+GGG - chr3_1:35523690-35523709 None:intergenic 30.0%
TGAATCACTCTAAGCAAAAA+GGG - chr3_1:35523756-35523775 None:intergenic 30.0%
ATGAATCACTCTAAGCAAAA+AGG - chr3_1:35523757-35523776 None:intergenic 30.0%
TCTCAAATTATTAGTGGAGT+CGG - chr3_1:35523825-35523844 None:intergenic 30.0%
TAAGAAGGTAGGATAAAAGA+AGG + chr3_1:35523938-35523957 Msa0356460:intron 30.0%
!! TTGATAATGTGCTTAGAACA+TGG + chr3_1:35524015-35524034 Msa0356460:intron 30.0%
! GTTTTTACATTTCTCTCGAT+AGG + chr3_1:35524418-35524437 Msa0356460:intron 30.0%
! ATTTTGCTCTTTTCTGATGA+TGG + chr3_1:35524555-35524574 Msa0356460:intron 30.0%
TGTGCAAATCCTAGAAAAAT+AGG + chr3_1:35524709-35524728 Msa0356460:intron 30.0%
!!! GCTTTTTTTGCTTCTATTTC+TGG - chr3_1:35525034-35525053 None:intergenic 30.0%
GATAGATGAAGAAGACAAAA+TGG + chr3_1:35525082-35525101 Msa0356460:intron 30.0%
CCAATAAGATACTATGAAAG+TGG - chr3_1:35525182-35525201 None:intergenic 30.0%
CCACTTTCATAGTATCTTAT+TGG + chr3_1:35525179-35525198 Msa0356460:intron 30.0%
GATCAAAAAAGAAGAATGCA+TGG - chr3_1:35525264-35525283 None:intergenic 30.0%
! TTATCATTCCACAGAACTTT+TGG + chr3_1:35525773-35525792 Msa0356460:intron 30.0%
!! TTTTGTTTATTGGGTGGATA+TGG - chr3_1:35525851-35525870 None:intergenic 30.0%
ATCAAATCAAAACTGAGAAG+TGG + chr3_1:35525877-35525896 Msa0356460:intron 30.0%
GTAAGGATATGTTGAACAAA+CGG + chr3_1:35525899-35525918 Msa0356460:intron 30.0%
TTGACTATTGATGTAAAAGC+TGG + chr3_1:35526195-35526214 Msa0356460:CDS 30.0%
TAAAAGCTGGATGGAAAAAA+GGG + chr3_1:35526208-35526227 Msa0356460:CDS 30.0%
GATTATCCAAAAGATAACTG+TGG + chr3_1:35526350-35526369 Msa0356460:CDS 30.0%
TGCTCTCACAAATAAAACAT+TGG + chr3_1:35526377-35526396 Msa0356460:CDS 30.0%
! AGTGTAATGGAAAGAGAACA+AGG - chr3_1:35522636-35522655 None:intergenic 35.0%
! TCATAGATTTTCCGCTTTAC+CGG - chr3_1:35522850-35522869 None:intergenic 35.0%
CGGAAAATCTATGACCAATA+CGG + chr3_1:35522856-35522875 Msa0356460:CDS 35.0%
TGTACAATGGGAATAGTAGA+AGG + chr3_1:35523079-35523098 Msa0356460:CDS 35.0%
TTACCCAGCATAATTAACCA+CGG - chr3_1:35523121-35523140 None:intergenic 35.0%
!! ACAACATTTCCCTTTTAGCT+TGG + chr3_1:35523562-35523581 Msa0356460:intron 35.0%
AGACCCCAAGTTTATGAAAT+TGG + chr3_1:35523683-35523702 Msa0356460:intron 35.0%
GACCCCAAGTTTATGAAATT+GGG + chr3_1:35523684-35523703 Msa0356460:intron 35.0%
CGATCCCAATTTCATAAACT+TGG - chr3_1:35523691-35523710 None:intergenic 35.0%
CTCCTAGTATTTGATTCTCA+TGG + chr3_1:35524098-35524117 Msa0356460:intron 35.0%
ATACACCCTCAATCTTAGAA+GGG + chr3_1:35524249-35524268 Msa0356460:intron 35.0%
TACATTTCTCTCGATAGGAT+TGG + chr3_1:35524423-35524442 Msa0356460:intron 35.0%
ACATTTCTCTCGATAGGATT+GGG + chr3_1:35524424-35524443 Msa0356460:intron 35.0%
TGTAACAGTGTGGTATCTAA+TGG + chr3_1:35524449-35524468 Msa0356460:intron 35.0%
GTTTAAGTGGAATTTGATCC+AGG + chr3_1:35524640-35524659 Msa0356460:intron 35.0%
ACAAAAAAAGCGGTCAAAAG+CGG + chr3_1:35525003-35525022 Msa0356460:intron 35.0%
AGATGAAGAAGACAAAATGG+TGG + chr3_1:35525085-35525104 Msa0356460:intron 35.0%
! AAGAAGACAAAATGGTGGAA+GGG + chr3_1:35525090-35525109 Msa0356460:intron 35.0%
GGAAGAAAGACAAATGAAGA+AGG + chr3_1:35525111-35525130 Msa0356460:intron 35.0%
AGAAAGACAAATGAAGAAGG+TGG + chr3_1:35525114-35525133 Msa0356460:intron 35.0%
TTCATAGTATCTTATTGGGC+TGG + chr3_1:35525184-35525203 Msa0356460:intron 35.0%
TCATAGTATCTTATTGGGCT+GGG + chr3_1:35525185-35525204 Msa0356460:intron 35.0%
TCTGCTAACAACTTAACCAA+TGG + chr3_1:35525817-35525836 Msa0356460:intron 35.0%
ATCAAAACTGAGAAGTGGTA+AGG + chr3_1:35525882-35525901 Msa0356460:intron 35.0%
CAGGTATAGTAATATTGAGG+AGG + chr3_1:35526167-35526186 Msa0356460:intron 35.0%
GTATAGTAATATTGAGGAGG+AGG + chr3_1:35526170-35526189 Msa0356460:CDS 35.0%
CTATTGATGTAAAAGCTGGA+TGG + chr3_1:35526199-35526218 Msa0356460:CDS 35.0%
GTAAAAGCTGGATGGAAAAA+AGG + chr3_1:35526207-35526226 Msa0356460:CDS 35.0%
AAAGGTTACCTTCAAAGAGA+AGG + chr3_1:35526233-35526252 Msa0356460:CDS 35.0%
AAGGTTACCTTCAAAGAGAA+GGG + chr3_1:35526234-35526253 Msa0356460:CDS 35.0%
! CTTAGATCAGATTTTTGCTG+AGG - chr3_1:35526570-35526589 None:intergenic 35.0%
CTCAGCAAAAATCTGATCTA+AGG + chr3_1:35526568-35526587 Msa0356460:CDS 35.0%
AGGAATAGTGAGTTAGTGAT+AGG + chr3_1:35526703-35526722 Msa0356460:three_prime_UTR 35.0%
GGAAAGAGAACAAGGTGATT+TGG - chr3_1:35522628-35522647 None:intergenic 40.0%
ACGTTGTAGTAATCCATGGA+TGG - chr3_1:35522670-35522689 None:intergenic 40.0%
!!! CCTCGATTCTTTTTTCAGGT+GGG - chr3_1:35522777-35522796 None:intergenic 40.0%
!!! TCAGCCTCGATTCTTTTTTC+AGG - chr3_1:35522781-35522800 None:intergenic 40.0%
TTCTCAGTAATCCGGTAAAG+CGG + chr3_1:35522836-35522855 Msa0356460:CDS 40.0%
TATGACCAATACGGTGAAGA+AGG + chr3_1:35522865-35522884 Msa0356460:CDS 40.0%
AGAACAAGAAGAAGAATGCC+GGG - chr3_1:35522917-35522936 None:intergenic 40.0%
GAGAACAAGAAGAAGAATGC+CGG - chr3_1:35522918-35522937 None:intergenic 40.0%
CATTCTTCTTCTTGTTCTCG+CGG + chr3_1:35522919-35522938 Msa0356460:CDS 40.0%
ATTCTTCTTCTTGTTCTCGC+GGG + chr3_1:35522920-35522939 Msa0356460:CDS 40.0%
TAAATATCATCAGCAGAGCG+AGG - chr3_1:35522976-35522995 None:intergenic 40.0%
GATAAAGATTACCAGAACCG+TGG + chr3_1:35523101-35523120 Msa0356460:CDS 40.0%
AGCATAATTAACCACGGTTC+TGG - chr3_1:35523115-35523134 None:intergenic 40.0%
AGAACCGTGGTTAATTATGC+TGG + chr3_1:35523114-35523133 Msa0356460:CDS 40.0%
GAACCGTGGTTAATTATGCT+GGG + chr3_1:35523115-35523134 Msa0356460:CDS 40.0%
!! CTTCCTTTGAAGCATGGATA+CGG + chr3_1:35523788-35523807 Msa0356460:intron 40.0%
!! TTCGTGCTTTGGTTCTGTTT+GGG + chr3_1:35523912-35523931 Msa0356460:intron 40.0%
GTTCTGTTTGGGAGTTAAGA+AGG + chr3_1:35523923-35523942 Msa0356460:intron 40.0%
TGTTTGGGAGTTAAGAAGGT+AGG + chr3_1:35523927-35523946 Msa0356460:intron 40.0%
CGCCATGAGAATCAAATACT+AGG - chr3_1:35524103-35524122 None:intergenic 40.0%
AGTATTTGATTCTCATGGCG+AGG + chr3_1:35524103-35524122 Msa0356460:intron 40.0%
CATACACCCTCAATCTTAGA+AGG + chr3_1:35524248-35524267 Msa0356460:intron 40.0%
TACACCCTCAATCTTAGAAG+GGG + chr3_1:35524250-35524269 Msa0356460:intron 40.0%
!! ATCACCCCTTCTAAGATTGA+GGG - chr3_1:35524257-35524276 None:intergenic 40.0%
TTTCCAGGCATAGTTGAGTT+TGG + chr3_1:35524504-35524523 Msa0356460:intron 40.0%
CTACAAACTTGAGGGATGTT+CGG - chr3_1:35524772-35524791 None:intergenic 40.0%
TGATTAAATGTGTGACCGAG+AGG + chr3_1:35524823-35524842 Msa0356460:intron 40.0%
GATTAAATGTGTGACCGAGA+GGG + chr3_1:35524824-35524843 Msa0356460:intron 40.0%
ATTAAATGTGTGACCGAGAG+GGG + chr3_1:35524825-35524844 Msa0356460:intron 40.0%
AACTATCACTTTACCCCTCT+CGG - chr3_1:35524841-35524860 None:intergenic 40.0%
AGCCAAAAAAACCGCTATCT+CGG - chr3_1:35524909-35524928 None:intergenic 40.0%
!!! TTTTGCTTCTATTTCTGGCG+CGG - chr3_1:35525029-35525048 None:intergenic 40.0%
! GAAGAAGACAAAATGGTGGA+AGG + chr3_1:35525089-35525108 Msa0356460:intron 40.0%
AGACAAATGAAGAAGGTGGT+TGG + chr3_1:35525118-35525137 Msa0356460:intron 40.0%
TAGTTGTCAAAGCGGAAATG+CGG - chr3_1:35525663-35525682 None:intergenic 40.0%
CTCAGTCATAGTTGTCAAAG+CGG - chr3_1:35525671-35525690 None:intergenic 40.0%
!! ATTCCACAGAACTTTTGGCT+TGG + chr3_1:35525778-35525797 Msa0356460:intron 40.0%
TATCCAAGCCAAAAGTTCTG+TGG - chr3_1:35525784-35525803 None:intergenic 40.0%
GTTTATTGGGTGGATATGGT+GGG - chr3_1:35525847-35525866 None:intergenic 40.0%
TGTTTATTGGGTGGATATGG+TGG - chr3_1:35525848-35525867 None:intergenic 40.0%
AACTTGTGCAATCCCATTTC+AGG + chr3_1:35526148-35526167 Msa0356460:intron 40.0%
TGGATGGAAAAAAGGGACAA+AGG + chr3_1:35526215-35526234 Msa0356460:CDS 40.0%
TTCCTAGTATAACGAGCATG+TGG - chr3_1:35526315-35526334 None:intergenic 40.0%
CATGCTCGTTATACTAGGAA+TGG + chr3_1:35526315-35526334 Msa0356460:CDS 40.0%
! CATCTGCCACAGTTATCTTT+TGG - chr3_1:35526359-35526378 None:intergenic 40.0%
AACATTGGAAATCCCTGCTT+TGG + chr3_1:35526392-35526411 Msa0356460:CDS 40.0%
TAGTCAGGTGTGACTACATT+TGG - chr3_1:35526444-35526463 None:intergenic 40.0%
TTATTGGCATCCCTTCATTG+GGG - chr3_1:35526479-35526498 None:intergenic 40.0%
GTTATTGGCATCCCTTCATT+GGG - chr3_1:35526480-35526499 None:intergenic 40.0%
ATGCCAATAACCAAACAACC+AGG + chr3_1:35526489-35526508 Msa0356460:CDS 40.0%
TGCCAATAACCAAACAACCA+GGG + chr3_1:35526490-35526509 Msa0356460:CDS 40.0%
TTGACATCAAGTATCCCTCA+AGG + chr3_1:35526538-35526557 Msa0356460:CDS 40.0%
! AATACCAGGGAAGCATACTT+GGG + chr3_1:35526659-35526678 Msa0356460:three_prime_UTR 40.0%
!! TGGGTTTTTGGACTATTTGC+AGG + chr3_1:35526678-35526697 Msa0356460:three_prime_UTR 40.0%
!! GGGTTTTTGGACTATTTGCA+GGG + chr3_1:35526679-35526698 Msa0356460:three_prime_UTR 40.0%
! TTTTGGACTATTTGCAGGGT+AGG + chr3_1:35526683-35526702 Msa0356460:three_prime_UTR 40.0%
! GGATTGCACTGACAGTGTAA+TGG - chr3_1:35522649-35522668 None:intergenic 45.0%
! TTTCAGGTGGGTGTTTGTCT+GGG - chr3_1:35522765-35522784 None:intergenic 45.0%
!!! TTTTCAGGTGGGTGTTTGTC+TGG - chr3_1:35522766-35522785 None:intergenic 45.0%
CCCACCTGAAAAAAGAATCG+AGG + chr3_1:35522774-35522793 Msa0356460:CDS 45.0%
!!! GCCTCGATTCTTTTTTCAGG+TGG - chr3_1:35522778-35522797 None:intergenic 45.0%
GGTGAAGAAGGCCTTCAATA+TGG + chr3_1:35522877-35522896 Msa0356460:CDS 45.0%
GAAGAAGGCCTTCAATATGG+TGG + chr3_1:35522880-35522899 Msa0356460:CDS 45.0%
GAACAAGAAGAAGAATGCCG+GGG - chr3_1:35522916-35522935 None:intergenic 45.0%
! TTGTACTGATACGCTGGAGA+TGG - chr3_1:35522952-35522971 None:intergenic 45.0%
!! CAGTTGCTTCCTTTGAAGCA+TGG + chr3_1:35523782-35523801 Msa0356460:intron 45.0%
TGTCCGTATCCATGCTTCAA+AGG - chr3_1:35523794-35523813 None:intergenic 45.0%
!! TATATGTGTCGGTGTCGTGT+CGG + chr3_1:35523867-35523886 Msa0356460:intron 45.0%
!! GTTCGTGCTTTGGTTCTGTT+TGG + chr3_1:35523911-35523930 Msa0356460:intron 45.0%
GGTAGGATAAAAGAAGGCTC+TGG + chr3_1:35523944-35523963 Msa0356460:intron 45.0%
! TAAAAGAAGGCTCTGGTGAG+AGG + chr3_1:35523951-35523970 Msa0356460:intron 45.0%
! AAAAGAAGGCTCTGGTGAGA+GGG + chr3_1:35523952-35523971 Msa0356460:intron 45.0%
TGATTCTCATGGCGAGGAAT+AGG + chr3_1:35524109-35524128 Msa0356460:intron 45.0%
GATTCTCATGGCGAGGAATA+GGG + chr3_1:35524110-35524129 Msa0356460:intron 45.0%
!! CATCACCCCTTCTAAGATTG+AGG - chr3_1:35524258-35524277 None:intergenic 45.0%
AGATGGTTCAAACCCCAAGA+TGG + chr3_1:35524313-35524332 Msa0356460:intron 45.0%
CAGCAGTATCTACCATCTTG+GGG - chr3_1:35524328-35524347 None:intergenic 45.0%
GCAGCAGTATCTACCATCTT+GGG - chr3_1:35524329-35524348 None:intergenic 45.0%
AGCAGCAGTATCTACCATCT+TGG - chr3_1:35524330-35524349 None:intergenic 45.0%
GATGGTAGATACTGCTGCTA+AGG + chr3_1:35524331-35524350 Msa0356460:intron 45.0%
GGATTGGGAATGTAACAGTG+TGG + chr3_1:35524439-35524458 Msa0356460:intron 45.0%
TTCAGGGACTTTCACAAACC+TGG - chr3_1:35524661-35524680 None:intergenic 45.0%
!!! GACCGAGATAGCGGTTTTTT+TGG + chr3_1:35524904-35524923 Msa0356460:intron 45.0%
CAAATGAAGAAGGTGGTTGG+CGG + chr3_1:35525121-35525140 Msa0356460:intron 45.0%
TGGCGGCTGCATAAAAAACT+AGG + chr3_1:35525138-35525157 Msa0356460:intron 45.0%
GGCGGCTGCATAAAAAACTA+GGG + chr3_1:35525139-35525158 Msa0356460:intron 45.0%
! GGATATGGTGGGATATCCAT+TGG - chr3_1:35525836-35525855 None:intergenic 45.0%
CTTGTCACCCTTCTCTTTGA+AGG - chr3_1:35526244-35526263 None:intergenic 45.0%
CACCACATGCTCGTTATACT+AGG + chr3_1:35526310-35526329 Msa0356460:CDS 45.0%
! TTGGAAATCCCTGCTTTGGA+TGG + chr3_1:35526396-35526415 Msa0356460:CDS 45.0%
! AAATCCCTGCTTTGGATGGA+AGG + chr3_1:35526400-35526419 Msa0356460:CDS 45.0%
GAATCCTTCCATCCAAAGCA+GGG - chr3_1:35526407-35526426 None:intergenic 45.0%
AGAATCCTTCCATCCAAAGC+AGG - chr3_1:35526408-35526427 None:intergenic 45.0%
GTGTGACTACATTTGGCAAC+TGG - chr3_1:35526437-35526456 None:intergenic 45.0%
AGCACAAAGTCCCCAATGAA+GGG + chr3_1:35526466-35526485 Msa0356460:CDS 45.0%
GGTTATTGGCATCCCTTCAT+TGG - chr3_1:35526481-35526500 None:intergenic 45.0%
CTCCCTGGTTGTTTGGTTAT+TGG - chr3_1:35526495-35526514 None:intergenic 45.0%
CAATAACCAAACAACCAGGG+AGG + chr3_1:35526493-35526512 Msa0356460:CDS 45.0%
! TTTAAAGTTCCCTTCCTCCC+TGG - chr3_1:35526510-35526529 None:intergenic 45.0%
TGCTGAGGAGTTAACCTTGA+GGG - chr3_1:35526555-35526574 None:intergenic 45.0%
TTGCTGAGGAGTTAACCTTG+AGG - chr3_1:35526556-35526575 None:intergenic 45.0%
ATGTGAAGGGCTAGAATACC+AGG + chr3_1:35526645-35526664 Msa0356460:three_prime_UTR 45.0%
TGTGAAGGGCTAGAATACCA+GGG + chr3_1:35526646-35526665 Msa0356460:three_prime_UTR 45.0%
! GAATACCAGGGAAGCATACT+TGG + chr3_1:35526658-35526677 Msa0356460:three_prime_UTR 45.0%
AAAACCCAAGTATGCTTCCC+TGG - chr3_1:35526666-35526685 None:intergenic 45.0%
!! GGGAAGCATACTTGGGTTTT+TGG + chr3_1:35526666-35526685 Msa0356460:three_prime_UTR 45.0%
!! AATAAAATAAAAAAAAGTTA+GGG - chr3_1:35523159-35523178 None:intergenic 5.0%
CTGTCAGTGCAATCCATCCA+TGG + chr3_1:35522654-35522673 Msa0356460:CDS 50.0%
GAAGGCCTTCTTCACCGTAT+TGG - chr3_1:35522873-35522892 None:intergenic 50.0%
! CGAGGATTGTACTGATACGC+TGG - chr3_1:35522958-35522977 None:intergenic 50.0%
! TTGAAGGGACGACCCCTTTT+TGG + chr3_1:35523309-35523328 Msa0356460:intron 50.0%
TATTAGTGGAGTCGGCGTGT+CGG - chr3_1:35523817-35523836 None:intergenic 50.0%
!! ATATGTGTCGGTGTCGTGTC+GGG + chr3_1:35523868-35523887 Msa0356460:intron 50.0%
ACCAAAGCACGAACACTCCT+CGG - chr3_1:35523905-35523924 None:intergenic 50.0%
! AAAGAAGGCTCTGGTGAGAG+GGG + chr3_1:35523953-35523972 Msa0356460:intron 50.0%
GGTCCAAACTCAACTATGCC+TGG - chr3_1:35524510-35524529 None:intergenic 50.0%
ATGGCCAATGCGGTCAAAAG+CGG + chr3_1:35524961-35524980 Msa0356460:intron 50.0%
! TCTTATTGGGCTGGGCCTAT+TGG + chr3_1:35525193-35525212 Msa0356460:intron 50.0%
! CTTATTGGGCTGGGCCTATT+GGG + chr3_1:35525194-35525213 Msa0356460:intron 50.0%
ATATCAGCTGGGATGATGCC+AGG - chr3_1:35526270-35526289 None:intergenic 50.0%
GGGACTTTGTGCTCATAGTC+AGG - chr3_1:35526459-35526478 None:intergenic 50.0%
GAGCACAAAGTCCCCAATGA+AGG + chr3_1:35526465-35526484 Msa0356460:CDS 50.0%
AACCAAACAACCAGGGAGGA+AGG + chr3_1:35526497-35526516 Msa0356460:CDS 50.0%
ACCAAACAACCAGGGAGGAA+GGG + chr3_1:35526498-35526517 Msa0356460:CDS 50.0%
GAGCGGCACCACCATATTGA+AGG - chr3_1:35522891-35522910 None:intergenic 55.0%
CAAGAAGAAGAATGCCGGGG+AGG - chr3_1:35522913-35522932 None:intergenic 55.0%
!! TATGTGTCGGTGTCGTGTCG+GGG + chr3_1:35523869-35523888 Msa0356460:intron 55.0%
GCACGAACACTCCTCGGATT+AGG - chr3_1:35523899-35523918 None:intergenic 55.0%
!! TCCGAGGAGTGTTCGTGCTT+TGG + chr3_1:35523901-35523920 Msa0356460:intron 55.0%
TGAGAGGGGAGGCAAAGGAA+TGG + chr3_1:35523967-35523986 Msa0356460:intron 55.0%
GAGAGGGGAGGCAAAGGAAT+GGG + chr3_1:35523968-35523987 Msa0356460:intron 55.0%
ATTGGCCATCAGACACGCAC+CGG - chr3_1:35524950-35524969 None:intergenic 55.0%
TGCGTGTCTGATGGCCAATG+CGG + chr3_1:35524951-35524970 Msa0356460:intron 55.0%
GCGGGCGATATTTCATGACG+CGG - chr3_1:35525590-35525609 None:intergenic 55.0%
GGCCACCCCAAAAATTGACG+CGG - chr3_1:35525632-35525651 None:intergenic 55.0%
GAGAAGGGTGACAAGAAGCC+TGG + chr3_1:35526249-35526268 Msa0356460:CDS 55.0%
TCCCTTCCTCCCTGGTTGTT+TGG - chr3_1:35526502-35526521 None:intergenic 55.0%
AGAAGAATGCCGGGGAGGAG+CGG - chr3_1:35522908-35522927 None:intergenic 60.0%
TCTGGTGAGAGGGGAGGCAA+AGG + chr3_1:35523962-35523981 Msa0356460:intron 60.0%
GGGGAGGCAAAGGAATGGGA+AGG + chr3_1:35523972-35523991 Msa0356460:intron 60.0%
TTCTCCGCGTTGAGCTGTGC+CGG + chr3_1:35524928-35524947 Msa0356460:intron 60.0%
!!! TCGGCCGCTTTTGACCGCAT+TGG - chr3_1:35524968-35524987 None:intergenic 60.0%
! TCCCGCGCCGCGTCAATTTT+TGG + chr3_1:35525622-35525641 Msa0356460:intron 60.0%
CCCAAAAATTGACGCGGCGC+GGG - chr3_1:35525626-35525645 None:intergenic 60.0%
! CCCGCGCCGCGTCAATTTTT+GGG + chr3_1:35525623-35525642 Msa0356460:intron 60.0%
CCCCAAAAATTGACGCGGCG+CGG - chr3_1:35525627-35525646 None:intergenic 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG + chr3_1:35525624-35525643 Msa0356460:intron 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG + chr3_1:35525627-35525646 Msa0356460:intron 60.0%
GTCAAAGCGGAAATGCGGCG+CGG - chr3_1:35525658-35525677 None:intergenic 60.0%
! GTCGGGGCACTCCTAATCCG+AGG + chr3_1:35523885-35523904 Msa0356460:intron 65.0%
! GAAGGCTCTGGTGAGAGGGG+AGG + chr3_1:35523956-35523975 Msa0356460:intron 65.0%
TATCTCGGTCGCGAAGCGGG+CGG - chr3_1:35524894-35524913 None:intergenic 65.0%
CGCTATCTCGGTCGCGAAGC+GGG - chr3_1:35524897-35524916 None:intergenic 65.0%
CCGCTATCTCGGTCGCGAAG+CGG - chr3_1:35524898-35524917 None:intergenic 65.0%
CCGCTTCGCGACCGAGATAG+CGG + chr3_1:35524895-35524914 Msa0356460:intron 65.0%
! CTGTGCCGGTGCGTGTCTGA+TGG + chr3_1:35524942-35524961 Msa0356460:intron 65.0%
AATTGACGCGGCGCGGGATG+CGG - chr3_1:35525620-35525639 None:intergenic 65.0%
!! ATGGTGGTGCCGCTCCTCCC+CGG + chr3_1:35522896-35522915 Msa0356460:CDS 70.0%
! CGCACCGGCACAGCTCAACG+CGG - chr3_1:35524935-35524954 None:intergenic 70.0%
ATTGACGCGGCGCGGGATGC+GGG - chr3_1:35525619-35525638 None:intergenic 70.0%
GCGGGATGCGGGAGCGAAGC+GGG - chr3_1:35525608-35525627 None:intergenic 75.0%
CGCGGGATGCGGGAGCGAAG+CGG - chr3_1:35525609-35525628 None:intergenic 75.0%
AGCGGAAATGCGGCGCGGCG+CGG - chr3_1:35525653-35525672 None:intergenic 75.0%
! CGGTCGCGAAGCGGGCGGCG+CGG - chr3_1:35524889-35524908 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 35522625 35526840 35522625 ID=Msa0356460;Name=Msa0356460
chr3_1 mRNA 35522625 35526840 35522625 ID=Msa0356460-mRNA-1;Parent=Msa0356460;Name=Msa0356460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|2|235|315
chr3_1 exon 35522625 35523136 35522625 ID=Msa0356460-mRNA-1:exon:6564;Parent=Msa0356460-mRNA-1
chr3_1 exon 35526170 35526840 35526170 ID=Msa0356460-mRNA-1:exon:6565;Parent=Msa0356460-mRNA-1
chr3_1 CDS 35522625 35523136 35522625 ID=Msa0356460-mRNA-1:cds;Parent=Msa0356460-mRNA-1
chr3_1 CDS 35526170 35526605 35526170 ID=Msa0356460-mRNA-1:cds;Parent=Msa0356460-mRNA-1
chr3_1 three_prime_UTR 35526606 35526840 35526606 ID=Msa0356460-mRNA-1:three_prime_utr;Parent=Msa0356460-mRNA-1
Gene Sequence

>Msa0356460

CCAAATCACCTTGTTCTCTTTCCATTACACTGTCAGTGCAATCCATCCATGGATTACTACAACGTTTTAAAAGTGAACAGAAACGCAACAGAAGAAGAATTAAGAACATCTTACAAAAGACTAGTTTTAATACATCACCCAGACAAACACCCACCTGAAAAAAGAATCGAGGCTGAACGCAGATTCATTCTCGTTTCTCAAGCTTACGATATTCTCAGTAATCCGGTAAAGCGGAAAATCTATGACCAATACGGTGAAGAAGGCCTTCAATATGGTGGTGCCGCTCCTCCCCGGCATTCTTCTTCTTGTTCTCGCGGGAAAGCTCCATCTCCAGCGTATCAGTACAATCCTCGCTCTGCTGATGATATTTATAATGATTTCTTTCGTCGTGAGAATAGTTTTGCAAAGAAGGATGATCCTATTGTGAGAACATTGTTTTGCAGTCTTGAAGAATTGTACAATGGGAATAGTAGAAGGATAAAGATTACCAGAACCGTGGTTAATTATGCTGGGTATAGTAATATTGAGGAGGAGGTGTTGACTATTGATGTAAAAGCTGGATGGAAAAAAGGGACAAAGGTTACCTTCAAAGAGAAGGGTGACAAGAAGCCTGGCATCATCCCAGCTGATATTATTTTTGTGATTGACGAGACACCACATGCTCGTTATACTAGGAATGGAAATGATCTTGTGATTATCCAAAAGATAACTGTGGCAGATGCTCTCACAAATAAAACATTGGAAATCCCTGCTTTGGATGGAAGGATTCTTTTTGTCCAGTTGCCAAATGTAGTCACACCTGACTATGAGCACAAAGTCCCCAATGAAGGGATGCCAATAACCAAACAACCAGGGAGGAAGGGAACTTTAAAAATCAAATTTGACATCAAGTATCCCTCAAGGTTAACTCCTCAGCAAAAATCTGATCTAAGGAGTGTCTTACGTTGA
Protein sequence

>Msa0356460

PNHLVLFPLHCQCNPSMDYYNVLKVNRNATEEELRTSYKRLVLIHHPDKHPPEKRIEAERRFILVSQAYDILSNPVKRKIYDQYGEEGLQYGGAAPPRHSSSCSRGKAPSPAYQYNPRSADDIYNDFFRRENSFAKKDDPIVRTLFCSLEELYNGNSRRIKITRTVVNYAGYSNIEEEVLTIDVKAGWKKGTKVTFKEKGDKKPGIIPADIIFVIDETPHARYTRNGNDLVIIQKITVADALTNKTLEIPALDGRILFVQLPNVVTPDYEHKVPNEGMPITKQPGRKGTLKIKFDIKYPSRLTPQQKSDLRSVLR*