Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366020 | XP_024633413.1 | 96.505 | 515 | 18 | 0 | 1 | 515 | 1 | 515 | 0.0 | 1006 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366020 | sp|F4I9E1|NFD4_ARATH | 39.015 | 528 | 291 | 11 | 7 | 511 | 43 | 562 | 6.84e-102 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366020 | A0A072UZ85 | 96.674 | 481 | 16 | 0 | 1 | 481 | 1 | 481 | 0.0 | 940 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026120 | Msa0366020 | 0.805304 | 1.424103e-49 | -8.615850e-47 |
| Msa0039200 | Msa0366020 | 0.808022 | 3.797974e-50 | -8.615850e-47 |
| Msa0046670 | Msa0366020 | 0.811773 | 5.921049e-51 | -8.615850e-47 |
| Msa0086820 | Msa0366020 | 0.802172 | 6.364200e-49 | -8.615850e-47 |
| Msa0112800 | Msa0366020 | 0.802805 | 4.712951e-49 | -8.615850e-47 |
| Msa0133670 | Msa0366020 | 0.803571 | 3.271497e-49 | -8.615850e-47 |
| Msa0133880 | Msa0366020 | 0.807605 | 4.658129e-50 | -8.615850e-47 |
| Msa0166580 | Msa0366020 | 0.801559 | 8.504279e-49 | -8.615850e-47 |
| Msa0184120 | Msa0366020 | 0.813668 | 2.277819e-51 | -8.615850e-47 |
| Msa0221940 | Msa0366020 | 0.808999 | 2.349640e-50 | -8.615850e-47 |
| Msa0366020 | Msa0377460 | 0.809997 | 1.434527e-50 | -8.615850e-47 |
| Msa0366020 | Msa0379720 | 0.808570 | 2.902955e-50 | -8.615850e-47 |
| Msa0366020 | Msa0414010 | 0.824159 | 9.386835e-54 | -8.615850e-47 |
| Msa0366020 | Msa0423110 | 0.800486 | 1.408818e-48 | -8.615850e-47 |
| Msa0366020 | Msa0427050 | 0.813301 | 2.742935e-51 | -8.615850e-47 |
| Msa0366020 | Msa0429130 | 0.807837 | 4.159527e-50 | -8.615850e-47 |
| Msa0366020 | Msa0459080 | 0.848078 | 7.705096e-60 | -8.615850e-47 |
| Msa0366020 | Msa0473320 | 0.814605 | 1.414749e-51 | -8.615850e-47 |
| Msa0366020 | Msa0473450 | 0.837723 | 4.391796e-57 | -8.615850e-47 |
| Msa0366020 | Msa0486860 | 0.802825 | 4.667736e-49 | -8.615850e-47 |
| Msa0366020 | Msa0505610 | 0.831400 | 1.705125e-55 | -8.615850e-47 |
| Msa0366020 | Msa0517400 | 0.809988 | 1.441041e-50 | -8.615850e-47 |
| Msa0366020 | Msa0549330 | 0.800059 | 1.721643e-48 | -8.615850e-47 |
| Msa0366020 | Msa0558890 | 0.806196 | 9.248624e-50 | -8.615850e-47 |
| Msa0366020 | Msa0568490 | 0.802760 | 4.813678e-49 | -8.615850e-47 |
| Msa0366020 | Msa0622400 | 0.810265 | 1.256143e-50 | -8.615850e-47 |
| Msa0366020 | Msa0646390 | 0.813844 | 2.083318e-51 | -8.615850e-47 |
| Msa0366020 | Msa0653710 | 0.818436 | 1.961703e-52 | -8.615850e-47 |
| Msa0366020 | Msa0654060 | 0.803781 | 2.959821e-49 | -8.615850e-47 |
| Msa0366020 | Msa0736930 | 0.805206 | 1.492699e-49 | -8.615850e-47 |
| Msa0366020 | Msa0755590 | 0.809427 | 1.902242e-50 | -8.615850e-47 |
| Msa0366020 | Msa0773290 | 0.804673 | 1.929548e-49 | -8.615850e-47 |
| Msa0366020 | Msa0797810 | 0.807885 | 4.062312e-50 | -8.615850e-47 |
| Msa0366020 | Msa0815950 | 0.800067 | 1.714571e-48 | -8.615850e-47 |
| Msa0366020 | Msa0861560 | 0.801976 | 6.983380e-49 | -8.615850e-47 |
| Msa0366020 | Msa0897390 | 0.804993 | 1.654232e-49 | -8.615850e-47 |
| Msa0366020 | Msa0927890 | 0.805001 | 1.648089e-49 | -8.615850e-47 |
| Msa0366020 | Msa0978000 | 0.828770 | 7.473617e-55 | -8.615850e-47 |
| Msa0366020 | Msa1008960 | 0.800049 | 1.729110e-48 | -8.615850e-47 |
| Msa0366020 | Msa1024580 | 0.806468 | 8.108267e-50 | -8.615850e-47 |
| Msa0366020 | Msa1071310 | 0.808084 | 3.685266e-50 | -8.615850e-47 |
| Msa0366020 | Msa1071460 | 0.801104 | 1.053948e-48 | -8.615850e-47 |
| Msa0366020 | Msa1124440 | 0.805793 | 1.124232e-49 | -8.615850e-47 |
| Msa0366020 | Msa1152500 | 0.814102 | 1.827535e-51 | -8.615850e-47 |
| Msa0366020 | Msa1168130 | 0.808619 | 2.832777e-50 | -8.615850e-47 |
| Msa0366020 | Msa1173410 | 0.803510 | 3.368733e-49 | -8.615850e-47 |
| Msa0366020 | Msa1195860 | 0.804762 | 1.848488e-49 | -8.615850e-47 |
| Msa0366020 | Msa1211370 | 0.810839 | 9.442674e-51 | -8.615850e-47 |
| Msa0366020 | Msa1218720 | 0.808377 | 3.191899e-50 | -8.615850e-47 |
| Msa0366020 | Msa1231520 | 0.807211 | 5.648152e-50 | -8.615850e-47 |
| Msa0366020 | Msa1246420 | 0.807175 | 5.747866e-50 | -8.615850e-47 |
| Msa0366020 | Msa1248400 | 0.803332 | 3.666130e-49 | -8.615850e-47 |
| Msa0366020 | Msa1287160 | 0.804893 | 1.735953e-49 | -8.615850e-47 |
| Msa0366020 | Msa1287340 | 0.814716 | 1.337443e-51 | -8.615850e-47 |
| Msa0366020 | Msa1289340 | 0.816561 | 5.190809e-52 | -8.615850e-47 |
| Msa0366020 | Msa1302920 | 0.801274 | 9.726623e-49 | -8.615850e-47 |
| Msa0366020 | Msa1309910 | 0.800225 | 1.592203e-48 | -8.615850e-47 |
| Msa0366020 | Msa1327820 | 0.809134 | 2.198337e-50 | -8.615850e-47 |
| Msa0366020 | Msa1381720 | 0.802382 | 5.761546e-49 | -8.615850e-47 |
| Msa0366020 | Msa1385940 | 0.830053 | 3.646580e-55 | -8.615850e-47 |
| Msa0366020 | Msa1397540 | 0.810997 | 8.725760e-51 | -8.615850e-47 |
| Msa0366020 | Msa1413880 | 0.805317 | 1.414847e-49 | -8.615850e-47 |
| Msa0366020 | Msa1415270 | 0.806556 | 7.768334e-50 | -8.615850e-47 |
| Msa0366020 | Msa1419040 | 0.809320 | 2.005874e-50 | -8.615850e-47 |
| Msa0366020 | Msa1452200 | 0.819497 | 1.126254e-52 | -8.615850e-47 |
| Msa0270610 | Msa0366020 | 0.814031 | 1.894963e-51 | -8.615850e-47 |
| Msa0301300 | Msa0366020 | 0.807726 | 4.390796e-50 | -8.615850e-47 |
| Msa0330270 | Msa0366020 | 0.807308 | 5.384662e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366020 | MtrunA17_Chr3g0106801 | 84.496 | 516 | 79 | 1 | 1 | 515 | 1 | 516 | 0.0 | 843 |
| Msa0366020 | MtrunA17_Chr3g0106821 | 96.809 | 376 | 12 | 0 | 1 | 376 | 1 | 376 | 0.0 | 733 |
| Msa0366020 | MtrunA17_Chr5g0408921 | 36.879 | 564 | 299 | 12 | 1 | 512 | 1 | 559 | 9.73e-110 | 338 |
| Msa0366020 | MtrunA17_Chr7g0251871 | 35.971 | 556 | 307 | 10 | 1 | 512 | 1 | 551 | 5.33e-105 | 325 |
| Msa0366020 | MtrunA17_Chr8g0369621 | 37.833 | 563 | 297 | 13 | 1 | 513 | 42 | 601 | 5.21e-101 | 316 |
| Msa0366020 | MtrunA17_Chr4g0037301 | 31.429 | 525 | 344 | 7 | 3 | 512 | 11 | 534 | 1.91e-78 | 256 |
| Msa0366020 | MtrunA17_Chr3g0106831 | 96.000 | 125 | 5 | 0 | 391 | 515 | 1 | 125 | 7.04e-73 | 227 |
| Msa0366020 | MtrunA17_Chr5g0405621 | 31.081 | 518 | 337 | 7 | 7 | 512 | 13 | 522 | 3.12e-63 | 215 |
| Msa0366020 | MtrunA17_Chr2g0304561 | 28.991 | 545 | 341 | 11 | 8 | 511 | 13 | 552 | 1.97e-58 | 203 |
| Msa0366020 | MtrunA17_Chr4g0064981 | 28.467 | 548 | 347 | 14 | 8 | 511 | 12 | 558 | 8.98e-54 | 191 |
| Msa0366020 | MtrunA17_Chr7g0225191 | 26.325 | 566 | 354 | 8 | 7 | 512 | 15 | 577 | 3.73e-44 | 164 |
| Msa0366020 | MtrunA17_Chr1g0174101 | 28.000 | 550 | 338 | 9 | 5 | 512 | 22 | 555 | 7.13e-43 | 160 |
| Msa0366020 | MtrunA17_Chr7g0264861 | 26.422 | 545 | 362 | 8 | 5 | 512 | 27 | 569 | 1.33e-38 | 149 |
| Msa0366020 | MtrunA17_Chr1g0171591 | 27.239 | 547 | 355 | 10 | 5 | 512 | 22 | 564 | 3.27e-38 | 147 |
| Msa0366020 | MtrunA17_Chr1g0210291 | 27.122 | 542 | 352 | 11 | 5 | 512 | 23 | 555 | 8.21e-38 | 146 |
| Msa0366020 | MtrunA17_Chr3g0132161 | 23.561 | 556 | 359 | 8 | 7 | 512 | 15 | 554 | 9.83e-35 | 137 |
| Msa0366020 | MtrunA17_Chr5g0442481 | 26.604 | 530 | 347 | 9 | 7 | 511 | 11 | 523 | 1.13e-34 | 137 |
| Msa0366020 | MtrunA17_Chr1g0210274 | 26.296 | 540 | 360 | 11 | 5 | 512 | 24 | 557 | 4.78e-34 | 135 |
| Msa0366020 | MtrunA17_Chr2g0330551 | 24.354 | 542 | 357 | 12 | 5 | 511 | 5 | 528 | 1.50e-33 | 133 |
| Msa0366020 | MtrunA17_Chr1g0210284 | 26.151 | 543 | 357 | 11 | 5 | 512 | 24 | 557 | 4.45e-33 | 132 |
| Msa0366020 | MtrunA17_Chr2g0333371 | 28.870 | 239 | 138 | 5 | 276 | 511 | 79 | 288 | 9.69e-21 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366020 | AT2G30300.1 | 50.667 | 525 | 222 | 8 | 1 | 514 | 1 | 499 | 2.43e-156 | 455 |
| Msa0366020 | AT5G45275.1 | 38.790 | 562 | 286 | 14 | 1 | 511 | 1 | 555 | 1.80e-112 | 345 |
| Msa0366020 | AT4G19450.1 | 39.292 | 565 | 281 | 14 | 1 | 511 | 1 | 557 | 1.34e-110 | 340 |
| Msa0366020 | AT1G31470.1 | 39.015 | 528 | 291 | 11 | 7 | 511 | 43 | 562 | 6.96e-103 | 320 |
| Msa0366020 | AT3G01630.1 | 36.059 | 538 | 294 | 12 | 7 | 511 | 23 | 543 | 3.80e-95 | 300 |
| Msa0366020 | AT3G01630.2 | 36.059 | 538 | 294 | 12 | 7 | 511 | 41 | 561 | 6.35e-95 | 300 |
| Msa0366020 | AT4G19450.2 | 38.756 | 418 | 204 | 11 | 1 | 373 | 1 | 411 | 7.22e-78 | 250 |
| Msa0366020 | AT4G34950.1 | 30.000 | 540 | 342 | 10 | 6 | 512 | 15 | 551 | 1.90e-70 | 235 |
| Msa0366020 | AT2G16660.1 | 31.041 | 538 | 328 | 9 | 2 | 512 | 9 | 530 | 1.28e-67 | 227 |
| Msa0366020 | AT1G80530.1 | 30.000 | 550 | 331 | 12 | 2 | 511 | 8 | 543 | 1.86e-63 | 216 |
| Msa0366020 | AT2G16660.2 | 31.910 | 398 | 232 | 8 | 2 | 376 | 9 | 390 | 6.60e-46 | 165 |
| Msa0366020 | AT5G50630.1 | 26.966 | 534 | 342 | 11 | 7 | 511 | 16 | 530 | 2.84e-44 | 164 |
| Msa0366020 | AT5G50520.1 | 26.966 | 534 | 342 | 11 | 7 | 511 | 16 | 530 | 2.84e-44 | 164 |
| Msa0366020 | AT2G28120.1 | 26.266 | 533 | 364 | 6 | 7 | 512 | 17 | 547 | 1.37e-43 | 163 |
| Msa0366020 | AT2G39210.1 | 26.306 | 555 | 358 | 11 | 1 | 512 | 10 | 556 | 4.21e-42 | 159 |
| Msa0366020 | AT5G14120.1 | 25.627 | 558 | 363 | 10 | 7 | 513 | 16 | 572 | 1.51e-41 | 157 |
| Msa0366020 | AT3G01930.2 | 25.755 | 563 | 359 | 10 | 7 | 512 | 16 | 576 | 2.66e-40 | 154 |
| Msa0366020 | AT1G74780.1 | 26.642 | 533 | 346 | 12 | 7 | 511 | 7 | 522 | 2.57e-38 | 147 |
| Msa0366020 | AT2G34355.1 | 25.981 | 535 | 338 | 12 | 7 | 511 | 7 | 513 | 4.37e-37 | 144 |
| Msa0366020 | AT1G18940.1 | 24.953 | 533 | 346 | 11 | 7 | 511 | 9 | 515 | 1.00e-34 | 137 |
| Msa0366020 | AT2G34350.1 | 23.845 | 541 | 358 | 10 | 1 | 512 | 1 | 516 | 1.28e-33 | 134 |
| Msa0366020 | AT2G34350.2 | 23.845 | 541 | 358 | 10 | 1 | 512 | 1 | 516 | 1.28e-33 | 134 |
| Msa0366020 | AT3G01930.3 | 25.679 | 405 | 254 | 8 | 7 | 366 | 16 | 418 | 4.25e-25 | 108 |
| Msa0366020 | AT2G34355.2 | 25.065 | 387 | 244 | 10 | 145 | 511 | 3 | 363 | 2.31e-21 | 96.3 |
| Msa0366020 | AT3G01930.1 | 24.406 | 463 | 291 | 10 | 107 | 512 | 3 | 463 | 2.81e-20 | 94.0 |
Find 94 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTATTTACCTTCCTTTA+TGG | 0.063933 | 3_1:+60429572 | Msa0366020:CDS |
| TCCTTAATCTTCACAGAAAT+TGG | 0.113544 | 3_1:-60430123 | None:intergenic |
| ATTTGTGTTTGTTCCATTTA+TGG | 0.143254 | 3_1:-60429434 | None:intergenic |
| TGTTGAGAAGAATAAATTTC+TGG | 0.186844 | 3_1:+60430310 | Msa0366020:CDS |
| GTGTCTTTGTCTTCTGCTTT+TGG | 0.192683 | 3_1:+60430438 | Msa0366020:CDS |
| TCCTCACTTGGTGTGCTTAT+TGG | 0.193854 | 3_1:+60430066 | Msa0366020:CDS |
| AATATGACATATAAGAAATT+TGG | 0.204019 | 3_1:-60429663 | None:intergenic |
| TTTGGTGTTTCTTAACAATT+TGG | 0.204315 | 3_1:+60430371 | Msa0366020:CDS |
| CTCATCATCGGTTCGTTTCT+CGG | 0.208698 | 3_1:+60429601 | Msa0366020:CDS |
| TTGTTGCCTTGGAACTTTAT+TGG | 0.215677 | 3_1:+60431558 | Msa0366020:CDS |
| TACACAAGCACTGCATTAAT+TGG | 0.219871 | 3_1:+60431310 | Msa0366020:CDS |
| CCCAATTTCTGTGAAGATTA+AGG | 0.220888 | 3_1:+60430122 | Msa0366020:CDS |
| TAAGCCTAGTTGGCATAATT+TGG | 0.232278 | 3_1:+60429404 | Msa0366020:CDS |
| TCCACAACAACTGAGCTATT+TGG | 0.249847 | 3_1:+60431367 | Msa0366020:CDS |
| AAACAAACACTAGAATGTTT+AGG | 0.266198 | 3_1:-60429964 | None:intergenic |
| ATTGGTGTTATGGAAGAAAT+TGG | 0.266375 | 3_1:+60430276 | Msa0366020:CDS |
| ATTTGGCTCCAAGCCATAAA+TGG | 0.278786 | 3_1:+60429421 | Msa0366020:CDS |
| AACAAACACTAGAATGTTTA+GGG | 0.279536 | 3_1:-60429963 | None:intergenic |
| ACGTCTCATTCCATCTCTTT+TGG | 0.289040 | 3_1:+60430470 | Msa0366020:CDS |
| TTCTTATTAACTTTCCTTGC+TGG | 0.290781 | 3_1:+60429694 | Msa0366020:CDS |
| TTGTTCTGCTACTTCATCTT+TGG | 0.300132 | 3_1:+60430416 | Msa0366020:CDS |
| AAATTTCTTATATGTCATAT+TGG | 0.330543 | 3_1:+60429665 | Msa0366020:CDS |
| AATTCAAGAGATTGGTGTTA+TGG | 0.341430 | 3_1:+60430266 | Msa0366020:CDS |
| TTTCTCGGACTAATCGGTTA+TGG | 0.348039 | 3_1:+60429616 | Msa0366020:CDS |
| TTGCTGGGAATAGCATTTGT+TGG | 0.369362 | 3_1:+60429710 | Msa0366020:CDS |
| AGAAATAAAAGCAACAATAT+TGG | 0.377396 | 3_1:-60429839 | None:intergenic |
| TAATGCAGTGCTTGTGTAAA+GGG | 0.381060 | 3_1:-60431305 | None:intergenic |
| TCTTATTAACTTTCCTTGCT+GGG | 0.386250 | 3_1:+60429695 | Msa0366020:CDS |
| TTGGTGTTTCTTAACAATTT+GGG | 0.387056 | 3_1:+60430372 | Msa0366020:CDS |
| TTTGTTATTACAATTGCAAC+TGG | 0.387762 | 3_1:+60429997 | Msa0366020:CDS |
| GGTTCGTTTCTCGGACTAAT+CGG | 0.394038 | 3_1:+60429610 | Msa0366020:CDS |
| GCATTAATTGGAGTTTCTAC+TGG | 0.394261 | 3_1:+60431322 | Msa0366020:CDS |
| TGGAAAGAAGTTGTTTCAGC+TGG | 0.401946 | 3_1:-60429474 | None:intergenic |
| AACTAAAACTTCTAAACTCT+TGG | 0.405485 | 3_1:-60429339 | None:intergenic |
| CCTTAATCTTCACAGAAATT+GGG | 0.415851 | 3_1:-60430122 | None:intergenic |
| ATTGAGCTCTACTTGTGAAA+TGG | 0.417219 | 3_1:-60429494 | None:intergenic |
| CATAGAGAATGAAGTGAAAG+AGG | 0.417366 | 3_1:+60430227 | Msa0366020:CDS |
| AGTTGTGAAATTCAAGAGAT+TGG | 0.423500 | 3_1:+60430258 | Msa0366020:CDS |
| TATTCTCCTCCATGGTGAAA+TGG | 0.428451 | 3_1:-60430191 | None:intergenic |
| TGTTTGTTCCATTTATGGCT+TGG | 0.449184 | 3_1:-60429429 | None:intergenic |
| GGATTAACAACTAGTTATCA+AGG | 0.460309 | 3_1:+60429796 | Msa0366020:CDS |
| CTTCAATGGCTAAGCCTAGT+TGG | 0.461205 | 3_1:+60429394 | Msa0366020:CDS |
| ACTATTATACCAACTACAAC+AGG | 0.461689 | 3_1:-60429907 | None:intergenic |
| ATGATGAGGACGAGCCATAA+AGG | 0.464353 | 3_1:-60429586 | None:intergenic |
| TGTCTTCTTCTACTCTTCAA+TGG | 0.465890 | 3_1:+60429380 | Msa0366020:CDS |
| AAGAAGAATGCAAATGTTGT+TGG | 0.467873 | 3_1:-60431259 | None:intergenic |
| TTCGATCGGCAAGTTGCCGT+TGG | 0.472775 | 3_1:+60429775 | Msa0366020:CDS |
| TGCCACTATAGTAGCAGTTA+TGG | 0.477489 | 3_1:+60431234 | Msa0366020:CDS |
| TTCACTATTATTCTCCTCCA+TGG | 0.479663 | 3_1:-60430199 | None:intergenic |
| TTATGGCTCGTCCTCATCAT+CGG | 0.493269 | 3_1:+60429589 | Msa0366020:CDS |
| TAAAGTTCCAAGGCAACAAA+AGG | 0.499408 | 3_1:-60431554 | None:intergenic |
| TTAAGGAACTCTTAGAATCA+TGG | 0.502848 | 3_1:+60430139 | Msa0366020:CDS |
| TCTCTTGTACCTGTTGTAGT+TGG | 0.504035 | 3_1:+60429898 | Msa0366020:CDS |
| GCACTTATTTACCGTGGTGA+AGG | 0.504829 | 3_1:+60431469 | Msa0366020:CDS |
| ACAGAAATTGGGAGTAAAAG+AGG | 0.514863 | 3_1:-60430111 | None:intergenic |
| TTAATGCAGTGCTTGTGTAA+AGG | 0.518439 | 3_1:-60431306 | None:intergenic |
| GCCAAATAGCTCAGTTGTTG+TGG | 0.519172 | 3_1:-60431368 | None:intergenic |
| CGTGGTGAAGGGAATGAACA+TGG | 0.521353 | 3_1:+60431481 | Msa0366020:CDS |
| TACGAAACTTTATATTCGAT+CGG | 0.522301 | 3_1:+60429761 | Msa0366020:CDS |
| TTCAGCTGGGAAGAGTAAGC+AGG | 0.524243 | 3_1:-60429460 | None:intergenic |
| CACTTATTTACCGTGGTGAA+GGG | 0.524996 | 3_1:+60431470 | Msa0366020:CDS |
| ATAGAGAATGAAGTGAAAGA+GGG | 0.533673 | 3_1:+60430228 | Msa0366020:CDS |
| GGAGCCAAATTATGCCAACT+AGG | 0.536045 | 3_1:-60429408 | None:intergenic |
| TGTAAATCATAATGTAGTTG+TGG | 0.538384 | 3_1:+60431405 | Msa0366020:CDS |
| TGACATATAAGAAATTTGGT+TGG | 0.540768 | 3_1:-60429659 | None:intergenic |
| TGCCATAACTGCTACTATAG+TGG | 0.544260 | 3_1:-60431236 | None:intergenic |
| GTTGTGGCAAATATTCCAAT+GGG | 0.544685 | 3_1:+60431421 | Msa0366020:CDS |
| GGAAAGAAGTTGTTTCAGCT+GGG | 0.546217 | 3_1:-60429473 | None:intergenic |
| ACCAATAAGCACACCAAGTG+AGG | 0.550160 | 3_1:-60430067 | None:intergenic |
| TAGAAGTAGTCCAAAAGAGA+TGG | 0.550728 | 3_1:-60430480 | None:intergenic |
| ACATGGGAAATGCATGGGTA+TGG | 0.552223 | 3_1:+60431498 | Msa0366020:CDS |
| ATCGAATATAAAGTTTCGTA+TGG | 0.555333 | 3_1:-60429758 | None:intergenic |
| ATAACTAGTTGTTAATCCAA+CGG | 0.572986 | 3_1:-60429791 | None:intergenic |
| AGTTGTGGCAAATATTCCAA+TGG | 0.576400 | 3_1:+60431420 | Msa0366020:CDS |
| ATAACTGCTACTATAGTGGC+AGG | 0.578194 | 3_1:-60431232 | None:intergenic |
| ACTTTAATTTCTCTTACTAG+AGG | 0.582711 | 3_1:-60429934 | None:intergenic |
| GAATGAACATGGGAAATGCA+TGG | 0.584360 | 3_1:+60431492 | Msa0366020:CDS |
| ACAAACAAAATATCCTCACT+TGG | 0.588126 | 3_1:+60430054 | Msa0366020:CDS |
| AATGAACATGGGAAATGCAT+GGG | 0.597152 | 3_1:+60431493 | Msa0366020:CDS |
| TCAAAGCCAATAAAGTTCCA+AGG | 0.602396 | 3_1:-60431564 | None:intergenic |
| AACAAATGCTATTCCCAGCA+AGG | 0.604864 | 3_1:-60429708 | None:intergenic |
| TATGGCGACGACATAACAAA+CGG | 0.608752 | 3_1:-60429740 | None:intergenic |
| CGAGAAACGAACCGATGATG+AGG | 0.622288 | 3_1:-60429600 | None:intergenic |
| GGACAAATAGCTGAATCAAG+AGG | 0.624039 | 3_1:+60430393 | Msa0366020:CDS |
| TCAGCTGGGAAGAGTAAGCA+GGG | 0.627009 | 3_1:-60429459 | None:intergenic |
| AGTTGTTGTGGAAATAGCAG+TGG | 0.639364 | 3_1:-60431356 | None:intergenic |
| TGAGGACGAGCCATAAAGGA+AGG | 0.648239 | 3_1:-60429582 | None:intergenic |
| CAGCATCAGATGCAAAAGCA+AGG | 0.659722 | 3_1:-60429519 | None:intergenic |
| CATGTTCATTCCCTTCACCA+CGG | 0.670222 | 3_1:-60431480 | None:intergenic |
| AAGGAAGGTAAATAGCAGCA+AGG | 0.673778 | 3_1:-60429567 | None:intergenic |
| TCAGCTGCACTTATTTACCG+TGG | 0.674454 | 3_1:+60431463 | Msa0366020:CDS |
| GTGGTGAAGGGAATGAACAT+GGG | 0.684893 | 3_1:+60431482 | Msa0366020:CDS |
| AATCTACCATTTCACCATGG+AGG | 0.703159 | 3_1:+60430185 | Msa0366020:CDS |
| AAGAATCTACCATTTCACCA+TGG | 0.716797 | 3_1:+60430182 | Msa0366020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAATTTTAATTTCAG+GGG | + | chr3_1:60431190-60431209 | Msa0366020:intron | 10.0% |
| !!! | AATAATAATTTTAATTTCAG+GGG | + | chr3_1:60431190-60431209 | Msa0366020:intron | 10.0% |
| !! | AATATGACATATAAGAAATT+TGG | - | chr3_1:60429666-60429685 | None:intergenic | 15.0% |
| !! | AAATTTCTTATATGTCATAT+TGG | + | chr3_1:60429665-60429684 | Msa0366020:CDS | 15.0% |
| !!! | TATTTCTTTGTGTATTTTTT+TGG | + | chr3_1:60430336-60430355 | Msa0366020:CDS | 15.0% |
| !! | AATATAAATAAAGAATCATG+TGG | - | chr3_1:60430541-60430560 | None:intergenic | 15.0% |
| !! | AAATTGTAAAAATTTAGTGT+CGG | - | chr3_1:60430703-60430722 | None:intergenic | 15.0% |
| !! | AAAAATTGTCTTGAAAATAT+AGG | - | chr3_1:60430894-60430913 | None:intergenic | 15.0% |
| !!! | TTCAAGACAATTTTTATTTA+AGG | + | chr3_1:60430899-60430918 | Msa0366020:intron | 15.0% |
| !!! | TTTTACTCATATAAACAATA+GGG | + | chr3_1:60431610-60431629 | Msa0366020:CDS | 15.0% |
| !! | AATATGACATATAAGAAATT+TGG | - | chr3_1:60429666-60429685 | None:intergenic | 15.0% |
| !! | AAATTTCTTATATGTCATAT+TGG | + | chr3_1:60429665-60429684 | Msa0366020:CDS | 15.0% |
| !!! | TATTTCTTTGTGTATTTTTT+TGG | + | chr3_1:60430336-60430355 | Msa0366020:CDS | 15.0% |
| !! | AATATAAATAAAGAATCATG+TGG | - | chr3_1:60430541-60430560 | None:intergenic | 15.0% |
| !! | AAATTGTAAAAATTTAGTGT+CGG | - | chr3_1:60430703-60430722 | None:intergenic | 15.0% |
| !! | AAAAATTGTCTTGAAAATAT+AGG | - | chr3_1:60430894-60430913 | None:intergenic | 15.0% |
| !!! | TTCAAGACAATTTTTATTTA+AGG | + | chr3_1:60430899-60430918 | Msa0366020:intron | 15.0% |
| !!! | TTTTACTCATATAAACAATA+GGG | + | chr3_1:60431610-60431629 | Msa0366020:CDS | 15.0% |
| !! | AGAAATAAAAGCAACAATAT+TGG | - | chr3_1:60429842-60429861 | None:intergenic | 20.0% |
| !! | CAAAATATTGACACTATATA+CGG | - | chr3_1:60430740-60430759 | None:intergenic | 20.0% |
| !!! | AATATCACTGCTTTTTTTAA+AGG | + | chr3_1:60430766-60430785 | Msa0366020:intron | 20.0% |
| !!! | GTTATGCTACATTTTAAAAA+AGG | - | chr3_1:60430961-60430980 | None:intergenic | 20.0% |
| !! | ATTTAATGCAATAATGACAA+TGG | + | chr3_1:60431011-60431030 | Msa0366020:intron | 20.0% |
| !!! | ATAGTAACACTTTTATCATT+TGG | + | chr3_1:60431527-60431546 | Msa0366020:CDS | 20.0% |
| !!! | TAGTAACACTTTTATCATTT+GGG | + | chr3_1:60431528-60431547 | Msa0366020:CDS | 20.0% |
| !!! | GTTTTACTCATATAAACAAT+AGG | + | chr3_1:60431609-60431628 | Msa0366020:CDS | 20.0% |
| !! | AGAAATAAAAGCAACAATAT+TGG | - | chr3_1:60429842-60429861 | None:intergenic | 20.0% |
| !! | CAAAATATTGACACTATATA+CGG | - | chr3_1:60430740-60430759 | None:intergenic | 20.0% |
| !!! | AATATCACTGCTTTTTTTAA+AGG | + | chr3_1:60430766-60430785 | Msa0366020:intron | 20.0% |
| !!! | GTTATGCTACATTTTAAAAA+AGG | - | chr3_1:60430961-60430980 | None:intergenic | 20.0% |
| !! | ATTTAATGCAATAATGACAA+TGG | + | chr3_1:60431011-60431030 | Msa0366020:intron | 20.0% |
| !!! | ATAGTAACACTTTTATCATT+TGG | + | chr3_1:60431527-60431546 | Msa0366020:CDS | 20.0% |
| !!! | TAGTAACACTTTTATCATTT+GGG | + | chr3_1:60431528-60431547 | Msa0366020:CDS | 20.0% |
| !!! | GTTTTACTCATATAAACAAT+AGG | + | chr3_1:60431609-60431628 | Msa0366020:CDS | 20.0% |
| ! | ATTTGTGTTTGTTCCATTTA+TGG | - | chr3_1:60429437-60429456 | None:intergenic | 25.0% |
| ! | TGACATATAAGAAATTTGGT+TGG | - | chr3_1:60429662-60429681 | None:intergenic | 25.0% |
| ! | ATCGAATATAAAGTTTCGTA+TGG | - | chr3_1:60429761-60429780 | None:intergenic | 25.0% |
| ! | TACGAAACTTTATATTCGAT+CGG | + | chr3_1:60429761-60429780 | Msa0366020:CDS | 25.0% |
| ! | ATAACTAGTTGTTAATCCAA+CGG | - | chr3_1:60429794-60429813 | None:intergenic | 25.0% |
| !!! | AATGTCTCAGCTTTTTTATT+TGG | - | chr3_1:60429865-60429884 | None:intergenic | 25.0% |
| !! | ACTTTAATTTCTCTTACTAG+AGG | - | chr3_1:60429937-60429956 | None:intergenic | 25.0% |
| ! | AACAAACACTAGAATGTTTA+GGG | - | chr3_1:60429966-60429985 | None:intergenic | 25.0% |
| ! | AAACAAACACTAGAATGTTT+AGG | - | chr3_1:60429967-60429986 | None:intergenic | 25.0% |
| !!! | TTTGTTATTACAATTGCAAC+TGG | + | chr3_1:60429997-60430016 | Msa0366020:CDS | 25.0% |
| ! | TGTTGAGAAGAATAAATTTC+TGG | + | chr3_1:60430310-60430329 | Msa0366020:CDS | 25.0% |
| !!! | TATTTTTTTGGTGCAACTAT+TGG | + | chr3_1:60430348-60430367 | Msa0366020:CDS | 25.0% |
| !!! | TTTGGTGTTTCTTAACAATT+TGG | + | chr3_1:60430371-60430390 | Msa0366020:CDS | 25.0% |
| !! | TTGGTGTTTCTTAACAATTT+GGG | + | chr3_1:60430372-60430391 | Msa0366020:CDS | 25.0% |
| ! | ACTCTAATGCAACTAATTTA+TGG | + | chr3_1:60430588-60430607 | Msa0366020:intron | 25.0% |
| !! | GAAAATTTTCGTTGCAATTT+AGG | - | chr3_1:60430646-60430665 | None:intergenic | 25.0% |
| ! | GGTTATTAAGCAACAAAATT+AGG | + | chr3_1:60430817-60430836 | Msa0366020:intron | 25.0% |
| !!! | ATAAATGCCATGATTTTAGT+TGG | - | chr3_1:60430985-60431004 | None:intergenic | 25.0% |
| !!! | GAAGAGGCTTTTAATTTTTT+TGG | - | chr3_1:60431074-60431093 | None:intergenic | 25.0% |
| ! | GCTAGTAACATTGAAAATAT+AGG | - | chr3_1:60431145-60431164 | None:intergenic | 25.0% |
| ! | TGTAAATCATAATGTAGTTG+TGG | + | chr3_1:60431405-60431424 | Msa0366020:CDS | 25.0% |
| !! | AGTAACACTTTTATCATTTG+GGG | + | chr3_1:60431529-60431548 | Msa0366020:CDS | 25.0% |
| !!! | TGGCTTTGATTCTATATTTT+AGG | + | chr3_1:60431578-60431597 | Msa0366020:CDS | 25.0% |
| ! | ATTTGTGTTTGTTCCATTTA+TGG | - | chr3_1:60429437-60429456 | None:intergenic | 25.0% |
| ! | TGACATATAAGAAATTTGGT+TGG | - | chr3_1:60429662-60429681 | None:intergenic | 25.0% |
| ! | ATCGAATATAAAGTTTCGTA+TGG | - | chr3_1:60429761-60429780 | None:intergenic | 25.0% |
| ! | TACGAAACTTTATATTCGAT+CGG | + | chr3_1:60429761-60429780 | Msa0366020:CDS | 25.0% |
| ! | ATAACTAGTTGTTAATCCAA+CGG | - | chr3_1:60429794-60429813 | None:intergenic | 25.0% |
| !!! | AATGTCTCAGCTTTTTTATT+TGG | - | chr3_1:60429865-60429884 | None:intergenic | 25.0% |
| !! | ACTTTAATTTCTCTTACTAG+AGG | - | chr3_1:60429937-60429956 | None:intergenic | 25.0% |
| ! | AACAAACACTAGAATGTTTA+GGG | - | chr3_1:60429966-60429985 | None:intergenic | 25.0% |
| ! | AAACAAACACTAGAATGTTT+AGG | - | chr3_1:60429967-60429986 | None:intergenic | 25.0% |
| !!! | TTTGTTATTACAATTGCAAC+TGG | + | chr3_1:60429997-60430016 | Msa0366020:CDS | 25.0% |
| ! | TGTTGAGAAGAATAAATTTC+TGG | + | chr3_1:60430310-60430329 | Msa0366020:CDS | 25.0% |
| !!! | TATTTTTTTGGTGCAACTAT+TGG | + | chr3_1:60430348-60430367 | Msa0366020:CDS | 25.0% |
| !!! | TTTGGTGTTTCTTAACAATT+TGG | + | chr3_1:60430371-60430390 | Msa0366020:CDS | 25.0% |
| !! | TTGGTGTTTCTTAACAATTT+GGG | + | chr3_1:60430372-60430391 | Msa0366020:CDS | 25.0% |
| ! | ACTCTAATGCAACTAATTTA+TGG | + | chr3_1:60430588-60430607 | Msa0366020:intron | 25.0% |
| !! | GAAAATTTTCGTTGCAATTT+AGG | - | chr3_1:60430646-60430665 | None:intergenic | 25.0% |
| ! | GGTTATTAAGCAACAAAATT+AGG | + | chr3_1:60430817-60430836 | Msa0366020:intron | 25.0% |
| !!! | ATAAATGCCATGATTTTAGT+TGG | - | chr3_1:60430985-60431004 | None:intergenic | 25.0% |
| !!! | GAAGAGGCTTTTAATTTTTT+TGG | - | chr3_1:60431074-60431093 | None:intergenic | 25.0% |
| ! | GCTAGTAACATTGAAAATAT+AGG | - | chr3_1:60431145-60431164 | None:intergenic | 25.0% |
| ! | TGTAAATCATAATGTAGTTG+TGG | + | chr3_1:60431405-60431424 | Msa0366020:CDS | 25.0% |
| !! | AGTAACACTTTTATCATTTG+GGG | + | chr3_1:60431529-60431548 | Msa0366020:CDS | 25.0% |
| !!! | TGGCTTTGATTCTATATTTT+AGG | + | chr3_1:60431578-60431597 | Msa0366020:CDS | 25.0% |
| !!! | AAACTTTTTGGTTGGTTTTC+TGG | + | chr3_1:60429544-60429563 | Msa0366020:CDS | 30.0% |
| TTCTTATTAACTTTCCTTGC+TGG | + | chr3_1:60429694-60429713 | Msa0366020:CDS | 30.0% | |
| TCTTATTAACTTTCCTTGCT+GGG | + | chr3_1:60429695-60429714 | Msa0366020:CDS | 30.0% | |
| GGATTAACAACTAGTTATCA+AGG | + | chr3_1:60429796-60429815 | Msa0366020:CDS | 30.0% | |
| ACTATTATACCAACTACAAC+AGG | - | chr3_1:60429910-60429929 | None:intergenic | 30.0% | |
| ACAAACAAAATATCCTCACT+TGG | + | chr3_1:60430054-60430073 | Msa0366020:CDS | 30.0% | |
| CCTTAATCTTCACAGAAATT+GGG | - | chr3_1:60430125-60430144 | None:intergenic | 30.0% | |
| TCCTTAATCTTCACAGAAAT+TGG | - | chr3_1:60430126-60430145 | None:intergenic | 30.0% | |
| TTAAGGAACTCTTAGAATCA+TGG | + | chr3_1:60430139-60430158 | Msa0366020:CDS | 30.0% | |
| ATAGAGAATGAAGTGAAAGA+GGG | + | chr3_1:60430228-60430247 | Msa0366020:CDS | 30.0% | |
| AGTTGTGAAATTCAAGAGAT+TGG | + | chr3_1:60430258-60430277 | Msa0366020:CDS | 30.0% | |
| !! | AATTCAAGAGATTGGTGTTA+TGG | + | chr3_1:60430266-60430285 | Msa0366020:CDS | 30.0% |
| !! | ATTGGTGTTATGGAAGAAAT+TGG | + | chr3_1:60430276-60430295 | Msa0366020:CDS | 30.0% |
| !! | TCTTCTGCTTTTGGATTTTT+TGG | + | chr3_1:60430447-60430466 | Msa0366020:CDS | 30.0% |
| GACTACTTCTATAGGTAATA+TGG | + | chr3_1:60430492-60430511 | Msa0366020:intron | 30.0% | |
| CATAACACCAACTAAAATCA+TGG | + | chr3_1:60430975-60430994 | Msa0366020:intron | 30.0% | |
| ! | AATAATGACAATGGTGATGT+TGG | + | chr3_1:60431020-60431039 | Msa0366020:intron | 30.0% |
| AAGAAGAATGCAAATGTTGT+TGG | - | chr3_1:60431262-60431281 | None:intergenic | 30.0% | |
| !!! | AAACTTTTTGGTTGGTTTTC+TGG | + | chr3_1:60429544-60429563 | Msa0366020:CDS | 30.0% |
| TTCTTATTAACTTTCCTTGC+TGG | + | chr3_1:60429694-60429713 | Msa0366020:CDS | 30.0% | |
| TCTTATTAACTTTCCTTGCT+GGG | + | chr3_1:60429695-60429714 | Msa0366020:CDS | 30.0% | |
| GGATTAACAACTAGTTATCA+AGG | + | chr3_1:60429796-60429815 | Msa0366020:CDS | 30.0% | |
| ACTATTATACCAACTACAAC+AGG | - | chr3_1:60429910-60429929 | None:intergenic | 30.0% | |
| ACAAACAAAATATCCTCACT+TGG | + | chr3_1:60430054-60430073 | Msa0366020:CDS | 30.0% | |
| CCTTAATCTTCACAGAAATT+GGG | - | chr3_1:60430125-60430144 | None:intergenic | 30.0% | |
| TCCTTAATCTTCACAGAAAT+TGG | - | chr3_1:60430126-60430145 | None:intergenic | 30.0% | |
| TTAAGGAACTCTTAGAATCA+TGG | + | chr3_1:60430139-60430158 | Msa0366020:CDS | 30.0% | |
| ATAGAGAATGAAGTGAAAGA+GGG | + | chr3_1:60430228-60430247 | Msa0366020:CDS | 30.0% | |
| AGTTGTGAAATTCAAGAGAT+TGG | + | chr3_1:60430258-60430277 | Msa0366020:CDS | 30.0% | |
| !! | AATTCAAGAGATTGGTGTTA+TGG | + | chr3_1:60430266-60430285 | Msa0366020:CDS | 30.0% |
| !! | ATTGGTGTTATGGAAGAAAT+TGG | + | chr3_1:60430276-60430295 | Msa0366020:CDS | 30.0% |
| !! | TCTTCTGCTTTTGGATTTTT+TGG | + | chr3_1:60430447-60430466 | Msa0366020:CDS | 30.0% |
| GACTACTTCTATAGGTAATA+TGG | + | chr3_1:60430492-60430511 | Msa0366020:intron | 30.0% | |
| CATAACACCAACTAAAATCA+TGG | + | chr3_1:60430975-60430994 | Msa0366020:intron | 30.0% | |
| ! | AATAATGACAATGGTGATGT+TGG | + | chr3_1:60431020-60431039 | Msa0366020:intron | 30.0% |
| AAGAAGAATGCAAATGTTGT+TGG | - | chr3_1:60431262-60431281 | None:intergenic | 30.0% | |
| TGTCTTCTTCTACTCTTCAA+TGG | + | chr3_1:60429380-60429399 | Msa0366020:CDS | 35.0% | |
| TAAGCCTAGTTGGCATAATT+TGG | + | chr3_1:60429404-60429423 | Msa0366020:CDS | 35.0% | |
| TGTTTGTTCCATTTATGGCT+TGG | - | chr3_1:60429432-60429451 | None:intergenic | 35.0% | |
| ATTGAGCTCTACTTGTGAAA+TGG | - | chr3_1:60429497-60429516 | None:intergenic | 35.0% | |
| ! | CTGCTATTTACCTTCCTTTA+TGG | + | chr3_1:60429572-60429591 | Msa0366020:CDS | 35.0% |
| ACAGAAATTGGGAGTAAAAG+AGG | - | chr3_1:60430114-60430133 | None:intergenic | 35.0% | |
| CCCAATTTCTGTGAAGATTA+AGG | + | chr3_1:60430122-60430141 | Msa0366020:CDS | 35.0% | |
| CATGGCACAAAAAAAGAGAA+AGG | + | chr3_1:60430157-60430176 | Msa0366020:CDS | 35.0% | |
| AAGAATCTACCATTTCACCA+TGG | + | chr3_1:60430182-60430201 | Msa0366020:CDS | 35.0% | |
| TTCACTATTATTCTCCTCCA+TGG | - | chr3_1:60430202-60430221 | None:intergenic | 35.0% | |
| CATAGAGAATGAAGTGAAAG+AGG | + | chr3_1:60430227-60430246 | Msa0366020:CDS | 35.0% | |
| !! | TTTTGGTGCAACTATTGGTT+TGG | + | chr3_1:60430353-60430372 | Msa0366020:CDS | 35.0% |
| ! | TTGTTCTGCTACTTCATCTT+TGG | + | chr3_1:60430416-60430435 | Msa0366020:CDS | 35.0% |
| TAGAAGTAGTCCAAAAGAGA+TGG | - | chr3_1:60430483-60430502 | None:intergenic | 35.0% | |
| ! | CTCTTTTGGACTACTTCTAT+AGG | + | chr3_1:60430484-60430503 | Msa0366020:CDS | 35.0% |
| AAAATGCTAACTAGTGCTCA+GGG | + | chr3_1:60430789-60430808 | Msa0366020:intron | 35.0% | |
| TAATGCAGTGCTTGTGTAAA+GGG | - | chr3_1:60431308-60431327 | None:intergenic | 35.0% | |
| TTAATGCAGTGCTTGTGTAA+AGG | - | chr3_1:60431309-60431328 | None:intergenic | 35.0% | |
| ! | TACACAAGCACTGCATTAAT+TGG | + | chr3_1:60431310-60431329 | Msa0366020:CDS | 35.0% |
| GCATTAATTGGAGTTTCTAC+TGG | + | chr3_1:60431322-60431341 | Msa0366020:CDS | 35.0% | |
| AGTTGTGGCAAATATTCCAA+TGG | + | chr3_1:60431420-60431439 | Msa0366020:CDS | 35.0% | |
| GTTGTGGCAAATATTCCAAT+GGG | + | chr3_1:60431421-60431440 | Msa0366020:CDS | 35.0% | |
| CCAAACAAAAATGATCCCAT+TGG | - | chr3_1:60431439-60431458 | None:intergenic | 35.0% | |
| !! | CCAATGGGATCATTTTTGTT+TGG | + | chr3_1:60431436-60431455 | Msa0366020:CDS | 35.0% |
| AATGAACATGGGAAATGCAT+GGG | + | chr3_1:60431493-60431512 | Msa0366020:CDS | 35.0% | |
| TAAAGTTCCAAGGCAACAAA+AGG | - | chr3_1:60431557-60431576 | None:intergenic | 35.0% | |
| TTGTTGCCTTGGAACTTTAT+TGG | + | chr3_1:60431558-60431577 | Msa0366020:CDS | 35.0% | |
| TCAAAGCCAATAAAGTTCCA+AGG | - | chr3_1:60431567-60431586 | None:intergenic | 35.0% | |
| TGTCTTCTTCTACTCTTCAA+TGG | + | chr3_1:60429380-60429399 | Msa0366020:CDS | 35.0% | |
| TAAGCCTAGTTGGCATAATT+TGG | + | chr3_1:60429404-60429423 | Msa0366020:CDS | 35.0% | |
| TGTTTGTTCCATTTATGGCT+TGG | - | chr3_1:60429432-60429451 | None:intergenic | 35.0% | |
| ATTGAGCTCTACTTGTGAAA+TGG | - | chr3_1:60429497-60429516 | None:intergenic | 35.0% | |
| ! | CTGCTATTTACCTTCCTTTA+TGG | + | chr3_1:60429572-60429591 | Msa0366020:CDS | 35.0% |
| ACAGAAATTGGGAGTAAAAG+AGG | - | chr3_1:60430114-60430133 | None:intergenic | 35.0% | |
| CCCAATTTCTGTGAAGATTA+AGG | + | chr3_1:60430122-60430141 | Msa0366020:CDS | 35.0% | |
| CATGGCACAAAAAAAGAGAA+AGG | + | chr3_1:60430157-60430176 | Msa0366020:CDS | 35.0% | |
| AAGAATCTACCATTTCACCA+TGG | + | chr3_1:60430182-60430201 | Msa0366020:CDS | 35.0% | |
| TTCACTATTATTCTCCTCCA+TGG | - | chr3_1:60430202-60430221 | None:intergenic | 35.0% | |
| CATAGAGAATGAAGTGAAAG+AGG | + | chr3_1:60430227-60430246 | Msa0366020:CDS | 35.0% | |
| !! | TTTTGGTGCAACTATTGGTT+TGG | + | chr3_1:60430353-60430372 | Msa0366020:CDS | 35.0% |
| ! | TTGTTCTGCTACTTCATCTT+TGG | + | chr3_1:60430416-60430435 | Msa0366020:CDS | 35.0% |
| TAGAAGTAGTCCAAAAGAGA+TGG | - | chr3_1:60430483-60430502 | None:intergenic | 35.0% | |
| ! | CTCTTTTGGACTACTTCTAT+AGG | + | chr3_1:60430484-60430503 | Msa0366020:CDS | 35.0% |
| AAAATGCTAACTAGTGCTCA+GGG | + | chr3_1:60430789-60430808 | Msa0366020:intron | 35.0% | |
| TAATGCAGTGCTTGTGTAAA+GGG | - | chr3_1:60431308-60431327 | None:intergenic | 35.0% | |
| TTAATGCAGTGCTTGTGTAA+AGG | - | chr3_1:60431309-60431328 | None:intergenic | 35.0% | |
| ! | TACACAAGCACTGCATTAAT+TGG | + | chr3_1:60431310-60431329 | Msa0366020:CDS | 35.0% |
| GCATTAATTGGAGTTTCTAC+TGG | + | chr3_1:60431322-60431341 | Msa0366020:CDS | 35.0% | |
| AGTTGTGGCAAATATTCCAA+TGG | + | chr3_1:60431420-60431439 | Msa0366020:CDS | 35.0% | |
| GTTGTGGCAAATATTCCAAT+GGG | + | chr3_1:60431421-60431440 | Msa0366020:CDS | 35.0% | |
| CCAAACAAAAATGATCCCAT+TGG | - | chr3_1:60431439-60431458 | None:intergenic | 35.0% | |
| !! | CCAATGGGATCATTTTTGTT+TGG | + | chr3_1:60431436-60431455 | Msa0366020:CDS | 35.0% |
| AATGAACATGGGAAATGCAT+GGG | + | chr3_1:60431493-60431512 | Msa0366020:CDS | 35.0% | |
| TAAAGTTCCAAGGCAACAAA+AGG | - | chr3_1:60431557-60431576 | None:intergenic | 35.0% | |
| TTGTTGCCTTGGAACTTTAT+TGG | + | chr3_1:60431558-60431577 | Msa0366020:CDS | 35.0% | |
| TCAAAGCCAATAAAGTTCCA+AGG | - | chr3_1:60431567-60431586 | None:intergenic | 35.0% | |
| ! | ATTTGGCTCCAAGCCATAAA+TGG | + | chr3_1:60429421-60429440 | Msa0366020:CDS | 40.0% |
| ! | GGAAAGAAGTTGTTTCAGCT+GGG | - | chr3_1:60429476-60429495 | None:intergenic | 40.0% |
| ! | TGGAAAGAAGTTGTTTCAGC+TGG | - | chr3_1:60429477-60429496 | None:intergenic | 40.0% |
| ! | TCTGATGCTGGCAAACTTTT+TGG | + | chr3_1:60429532-60429551 | Msa0366020:CDS | 40.0% |
| !! | ATGCTGGCAAACTTTTTGGT+TGG | + | chr3_1:60429536-60429555 | Msa0366020:CDS | 40.0% |
| AAGGAAGGTAAATAGCAGCA+AGG | - | chr3_1:60429570-60429589 | None:intergenic | 40.0% | |
| TTTCTCGGACTAATCGGTTA+TGG | + | chr3_1:60429616-60429635 | Msa0366020:CDS | 40.0% | |
| AACAAATGCTATTCCCAGCA+AGG | - | chr3_1:60429711-60429730 | None:intergenic | 40.0% | |
| TTGCTGGGAATAGCATTTGT+TGG | + | chr3_1:60429710-60429729 | Msa0366020:CDS | 40.0% | |
| TATGGCGACGACATAACAAA+CGG | - | chr3_1:60429743-60429762 | None:intergenic | 40.0% | |
| TCTCTTGTACCTGTTGTAGT+TGG | + | chr3_1:60429898-60429917 | Msa0366020:CDS | 40.0% | |
| AATCTACCATTTCACCATGG+AGG | + | chr3_1:60430185-60430204 | Msa0366020:CDS | 40.0% | |
| TATTCTCCTCCATGGTGAAA+TGG | - | chr3_1:60430194-60430213 | None:intergenic | 40.0% | |
| GGACAAATAGCTGAATCAAG+AGG | + | chr3_1:60430393-60430412 | Msa0366020:CDS | 40.0% | |
| ! | GTGTCTTTGTCTTCTGCTTT+TGG | + | chr3_1:60430438-60430457 | Msa0366020:CDS | 40.0% |
| ! | ACGTCTCATTCCATCTCTTT+TGG | + | chr3_1:60430470-60430489 | Msa0366020:CDS | 40.0% |
| CAATTTAGGCAGCAACTTCA+AGG | - | chr3_1:60430632-60430651 | None:intergenic | 40.0% | |
| GAAAATGCTAACTAGTGCTC+AGG | + | chr3_1:60430788-60430807 | Msa0366020:intron | 40.0% | |
| AAATGCTAACTAGTGCTCAG+GGG | + | chr3_1:60430790-60430809 | Msa0366020:intron | 40.0% | |
| GATTCCTTAACTAGTGCTTC+TGG | + | chr3_1:60430921-60430940 | Msa0366020:intron | 40.0% | |
| !! | TGTTCCAGAAGCACTAGTTA+AGG | - | chr3_1:60430928-60430947 | None:intergenic | 40.0% |
| ! | AGCCTCTTCTCTTATTGACT+TGG | + | chr3_1:60431085-60431104 | Msa0366020:intron | 40.0% |
| AGCCAAGTCAATAAGAGAAG+AGG | - | chr3_1:60431090-60431109 | None:intergenic | 40.0% | |
| ATAACTGCTACTATAGTGGC+AGG | - | chr3_1:60431235-60431254 | None:intergenic | 40.0% | |
| TGCCACTATAGTAGCAGTTA+TGG | + | chr3_1:60431234-60431253 | Msa0366020:CDS | 40.0% | |
| TGCCATAACTGCTACTATAG+TGG | - | chr3_1:60431239-60431258 | None:intergenic | 40.0% | |
| AGTTGTTGTGGAAATAGCAG+TGG | - | chr3_1:60431359-60431378 | None:intergenic | 40.0% | |
| TCCACAACAACTGAGCTATT+TGG | + | chr3_1:60431367-60431386 | Msa0366020:CDS | 40.0% | |
| CACTTATTTACCGTGGTGAA+GGG | + | chr3_1:60431470-60431489 | Msa0366020:CDS | 40.0% | |
| GAATGAACATGGGAAATGCA+TGG | + | chr3_1:60431492-60431511 | Msa0366020:CDS | 40.0% | |
| ! | ATTTGGCTCCAAGCCATAAA+TGG | + | chr3_1:60429421-60429440 | Msa0366020:CDS | 40.0% |
| ! | GGAAAGAAGTTGTTTCAGCT+GGG | - | chr3_1:60429476-60429495 | None:intergenic | 40.0% |
| ! | TGGAAAGAAGTTGTTTCAGC+TGG | - | chr3_1:60429477-60429496 | None:intergenic | 40.0% |
| ! | TCTGATGCTGGCAAACTTTT+TGG | + | chr3_1:60429532-60429551 | Msa0366020:CDS | 40.0% |
| !! | ATGCTGGCAAACTTTTTGGT+TGG | + | chr3_1:60429536-60429555 | Msa0366020:CDS | 40.0% |
| AAGGAAGGTAAATAGCAGCA+AGG | - | chr3_1:60429570-60429589 | None:intergenic | 40.0% | |
| TTTCTCGGACTAATCGGTTA+TGG | + | chr3_1:60429616-60429635 | Msa0366020:CDS | 40.0% | |
| AACAAATGCTATTCCCAGCA+AGG | - | chr3_1:60429711-60429730 | None:intergenic | 40.0% | |
| TTGCTGGGAATAGCATTTGT+TGG | + | chr3_1:60429710-60429729 | Msa0366020:CDS | 40.0% | |
| TATGGCGACGACATAACAAA+CGG | - | chr3_1:60429743-60429762 | None:intergenic | 40.0% | |
| TCTCTTGTACCTGTTGTAGT+TGG | + | chr3_1:60429898-60429917 | Msa0366020:CDS | 40.0% | |
| AATCTACCATTTCACCATGG+AGG | + | chr3_1:60430185-60430204 | Msa0366020:CDS | 40.0% | |
| TATTCTCCTCCATGGTGAAA+TGG | - | chr3_1:60430194-60430213 | None:intergenic | 40.0% | |
| GGACAAATAGCTGAATCAAG+AGG | + | chr3_1:60430393-60430412 | Msa0366020:CDS | 40.0% | |
| ! | GTGTCTTTGTCTTCTGCTTT+TGG | + | chr3_1:60430438-60430457 | Msa0366020:CDS | 40.0% |
| ! | ACGTCTCATTCCATCTCTTT+TGG | + | chr3_1:60430470-60430489 | Msa0366020:CDS | 40.0% |
| CAATTTAGGCAGCAACTTCA+AGG | - | chr3_1:60430632-60430651 | None:intergenic | 40.0% | |
| GAAAATGCTAACTAGTGCTC+AGG | + | chr3_1:60430788-60430807 | Msa0366020:intron | 40.0% | |
| AAATGCTAACTAGTGCTCAG+GGG | + | chr3_1:60430790-60430809 | Msa0366020:intron | 40.0% | |
| GATTCCTTAACTAGTGCTTC+TGG | + | chr3_1:60430921-60430940 | Msa0366020:intron | 40.0% | |
| !! | TGTTCCAGAAGCACTAGTTA+AGG | - | chr3_1:60430928-60430947 | None:intergenic | 40.0% |
| ! | AGCCTCTTCTCTTATTGACT+TGG | + | chr3_1:60431085-60431104 | Msa0366020:intron | 40.0% |
| AGCCAAGTCAATAAGAGAAG+AGG | - | chr3_1:60431090-60431109 | None:intergenic | 40.0% | |
| ATAACTGCTACTATAGTGGC+AGG | - | chr3_1:60431235-60431254 | None:intergenic | 40.0% | |
| TGCCACTATAGTAGCAGTTA+TGG | + | chr3_1:60431234-60431253 | Msa0366020:CDS | 40.0% | |
| TGCCATAACTGCTACTATAG+TGG | - | chr3_1:60431239-60431258 | None:intergenic | 40.0% | |
| AGTTGTTGTGGAAATAGCAG+TGG | - | chr3_1:60431359-60431378 | None:intergenic | 40.0% | |
| TCCACAACAACTGAGCTATT+TGG | + | chr3_1:60431367-60431386 | Msa0366020:CDS | 40.0% | |
| CACTTATTTACCGTGGTGAA+GGG | + | chr3_1:60431470-60431489 | Msa0366020:CDS | 40.0% | |
| GAATGAACATGGGAAATGCA+TGG | + | chr3_1:60431492-60431511 | Msa0366020:CDS | 40.0% | |
| CTTCAATGGCTAAGCCTAGT+TGG | + | chr3_1:60429394-60429413 | Msa0366020:CDS | 45.0% | |
| GGAGCCAAATTATGCCAACT+AGG | - | chr3_1:60429411-60429430 | None:intergenic | 45.0% | |
| CAGCATCAGATGCAAAAGCA+AGG | - | chr3_1:60429522-60429541 | None:intergenic | 45.0% | |
| !! | CTTGCTTTTGCATCTGATGC+TGG | + | chr3_1:60429520-60429539 | Msa0366020:CDS | 45.0% |
| ATGATGAGGACGAGCCATAA+AGG | - | chr3_1:60429589-60429608 | None:intergenic | 45.0% | |
| TTATGGCTCGTCCTCATCAT+CGG | + | chr3_1:60429589-60429608 | Msa0366020:CDS | 45.0% | |
| !! | CTCATCATCGGTTCGTTTCT+CGG | + | chr3_1:60429601-60429620 | Msa0366020:CDS | 45.0% |
| GGTTCGTTTCTCGGACTAAT+CGG | + | chr3_1:60429610-60429629 | Msa0366020:CDS | 45.0% | |
| !! | TCCTCACTTGGTGTGCTTAT+TGG | + | chr3_1:60430066-60430085 | Msa0366020:CDS | 45.0% |
| ACCAATAAGCACACCAAGTG+AGG | - | chr3_1:60430070-60430089 | None:intergenic | 45.0% | |
| GCCAAATAGCTCAGTTGTTG+TGG | - | chr3_1:60431371-60431390 | None:intergenic | 45.0% | |
| TCAGCTGCACTTATTTACCG+TGG | + | chr3_1:60431463-60431482 | Msa0366020:CDS | 45.0% | |
| GCACTTATTTACCGTGGTGA+AGG | + | chr3_1:60431469-60431488 | Msa0366020:CDS | 45.0% | |
| CATGTTCATTCCCTTCACCA+CGG | - | chr3_1:60431483-60431502 | None:intergenic | 45.0% | |
| GTGGTGAAGGGAATGAACAT+GGG | + | chr3_1:60431482-60431501 | Msa0366020:CDS | 45.0% | |
| ACATGGGAAATGCATGGGTA+TGG | + | chr3_1:60431498-60431517 | Msa0366020:CDS | 45.0% | |
| CTTCAATGGCTAAGCCTAGT+TGG | + | chr3_1:60429394-60429413 | Msa0366020:CDS | 45.0% | |
| GGAGCCAAATTATGCCAACT+AGG | - | chr3_1:60429411-60429430 | None:intergenic | 45.0% | |
| CAGCATCAGATGCAAAAGCA+AGG | - | chr3_1:60429522-60429541 | None:intergenic | 45.0% | |
| !! | CTTGCTTTTGCATCTGATGC+TGG | + | chr3_1:60429520-60429539 | Msa0366020:CDS | 45.0% |
| ATGATGAGGACGAGCCATAA+AGG | - | chr3_1:60429589-60429608 | None:intergenic | 45.0% | |
| TTATGGCTCGTCCTCATCAT+CGG | + | chr3_1:60429589-60429608 | Msa0366020:CDS | 45.0% | |
| !! | CTCATCATCGGTTCGTTTCT+CGG | + | chr3_1:60429601-60429620 | Msa0366020:CDS | 45.0% |
| GGTTCGTTTCTCGGACTAAT+CGG | + | chr3_1:60429610-60429629 | Msa0366020:CDS | 45.0% | |
| !! | TCCTCACTTGGTGTGCTTAT+TGG | + | chr3_1:60430066-60430085 | Msa0366020:CDS | 45.0% |
| ACCAATAAGCACACCAAGTG+AGG | - | chr3_1:60430070-60430089 | None:intergenic | 45.0% | |
| GCCAAATAGCTCAGTTGTTG+TGG | - | chr3_1:60431371-60431390 | None:intergenic | 45.0% | |
| TCAGCTGCACTTATTTACCG+TGG | + | chr3_1:60431463-60431482 | Msa0366020:CDS | 45.0% | |
| GCACTTATTTACCGTGGTGA+AGG | + | chr3_1:60431469-60431488 | Msa0366020:CDS | 45.0% | |
| CATGTTCATTCCCTTCACCA+CGG | - | chr3_1:60431483-60431502 | None:intergenic | 45.0% | |
| GTGGTGAAGGGAATGAACAT+GGG | + | chr3_1:60431482-60431501 | Msa0366020:CDS | 45.0% | |
| ACATGGGAAATGCATGGGTA+TGG | + | chr3_1:60431498-60431517 | Msa0366020:CDS | 45.0% | |
| !!! | TTAATAATAATTTTAATTTC+AGG | + | chr3_1:60431188-60431207 | Msa0366020:intron | 5.0% |
| !!! | TAATAATAATTTTAATTTCA+GGG | + | chr3_1:60431189-60431208 | Msa0366020:intron | 5.0% |
| !!! | TTAATAATAATTTTAATTTC+AGG | + | chr3_1:60431188-60431207 | Msa0366020:intron | 5.0% |
| !!! | TAATAATAATTTTAATTTCA+GGG | + | chr3_1:60431189-60431208 | Msa0366020:intron | 5.0% |
| TCAGCTGGGAAGAGTAAGCA+GGG | - | chr3_1:60429462-60429481 | None:intergenic | 50.0% | |
| TTCAGCTGGGAAGAGTAAGC+AGG | - | chr3_1:60429463-60429482 | None:intergenic | 50.0% | |
| TGAGGACGAGCCATAAAGGA+AGG | - | chr3_1:60429585-60429604 | None:intergenic | 50.0% | |
| CGAGAAACGAACCGATGATG+AGG | - | chr3_1:60429603-60429622 | None:intergenic | 50.0% | |
| ! | TAACTAGTGCTCAGGGGCAT+TGG | + | chr3_1:60430796-60430815 | Msa0366020:intron | 50.0% |
| CGTGGTGAAGGGAATGAACA+TGG | + | chr3_1:60431481-60431500 | Msa0366020:CDS | 50.0% | |
| ! | TGGGGTTCCTTTTGTTGCCT+TGG | + | chr3_1:60431547-60431566 | Msa0366020:CDS | 50.0% |
| TCAGCTGGGAAGAGTAAGCA+GGG | - | chr3_1:60429462-60429481 | None:intergenic | 50.0% | |
| TTCAGCTGGGAAGAGTAAGC+AGG | - | chr3_1:60429463-60429482 | None:intergenic | 50.0% | |
| TGAGGACGAGCCATAAAGGA+AGG | - | chr3_1:60429585-60429604 | None:intergenic | 50.0% | |
| CGAGAAACGAACCGATGATG+AGG | - | chr3_1:60429603-60429622 | None:intergenic | 50.0% | |
| ! | TAACTAGTGCTCAGGGGCAT+TGG | + | chr3_1:60430796-60430815 | Msa0366020:intron | 50.0% |
| CGTGGTGAAGGGAATGAACA+TGG | + | chr3_1:60431481-60431500 | Msa0366020:CDS | 50.0% | |
| ! | TGGGGTTCCTTTTGTTGCCT+TGG | + | chr3_1:60431547-60431566 | Msa0366020:CDS | 50.0% |
| TTCGATCGGCAAGTTGCCGT+TGG | + | chr3_1:60429775-60429794 | Msa0366020:CDS | 55.0% | |
| TTCGATCGGCAAGTTGCCGT+TGG | + | chr3_1:60429775-60429794 | Msa0366020:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 60429341 | 60431677 | 60429341 | ID=Msa0366020;Name=Msa0366020 |
| chr3_1 | mRNA | 60429341 | 60431677 | 60429341 | ID=Msa0366020-mRNA-1;Parent=Msa0366020;Name=Msa0366020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=38|1|1|1|1|1|2|47|515 |
| chr3_1 | exon | 60429341 | 60430505 | 60429341 | ID=Msa0366020-mRNA-1:exon:11645;Parent=Msa0366020-mRNA-1 |
| chr3_1 | exon | 60431210 | 60431677 | 60431210 | ID=Msa0366020-mRNA-1:exon:11646;Parent=Msa0366020-mRNA-1 |
| chr3_1 | five_prime_UTR | 60429341 | 60429378 | 60429341 | ID=Msa0366020-mRNA-1:five_prime_utr;Parent=Msa0366020-mRNA-1 |
| chr3_1 | CDS | 60429379 | 60430505 | 60429379 | ID=Msa0366020-mRNA-1:cds;Parent=Msa0366020-mRNA-1 |
| chr3_1 | CDS | 60431210 | 60431630 | 60431210 | ID=Msa0366020-mRNA-1:cds;Parent=Msa0366020-mRNA-1 |
| chr3_1 | three_prime_UTR | 60431631 | 60431677 | 60431631 | ID=Msa0366020-mRNA-1:three_prime_utr;Parent=Msa0366020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
