AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0486860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0486860 MtrunA17_Chr3g0102541 76.404 89 2 1 1 70 1 89 1.59e-39 137
Msa0486860 MtrunA17_Chr3g0102531 71.910 89 6 1 1 70 1 89 5.96e-37 130
Msa0486860 MtrunA17_Chr3g0102551 48.958 96 22 2 2 70 4 99 3.81e-22 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 25 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTTGTGAAAGTCTTTC+AGG 0.152461 3_4:-4907369 None:intergenic
TACCCAAAGATGATGGAAAA+TGG 0.210935 3_4:+4907250 Msa0486860:CDS
GGGAAGGGTTGCCTGAAAAT+AGG 0.232701 3_4:-4907348 None:intergenic
TGAAAATAGGGTTCCATCTA+AGG 0.252001 3_4:-4907335 None:intergenic
TCCTTCGTCAAGCCCTTAGA+TGG 0.335267 3_4:+4907322 Msa0486860:CDS
GATTGCTTTGTGCTGAACTA+TGG 0.350824 3_4:+4907283 Msa0486860:CDS
CTTTGTGCTGAACTATGGTT+TGG 0.397394 3_4:+4907288 Msa0486860:CDS
AAGATGATGGAAAATGGGTT+TGG 0.398362 3_4:+4907256 Msa0486860:CDS
GGAAGGGTTGCCTGAAAATA+GGG 0.418014 3_4:-4907347 None:intergenic
TTTGAGACAAGGAGAGGGAA+GGG 0.431324 3_4:+4907150 Msa0486860:CDS
ACCCAAAGATGATGGAAAAT+GGG 0.457309 3_4:+4907251 Msa0486860:CDS
GATGGAAAATGGGTTTGGAT+TGG 0.463337 3_4:+4907261 Msa0486860:CDS
ATTAACAAAGATGGGGAAAG+AGG 0.477757 3_4:+4907113 None:intergenic
CCTCTCCTTGTCTCAAACAA+TGG 0.489487 3_4:-4907144 None:intergenic
ACCTTTGTGAAAGTCTTTCA+GGG 0.501356 3_4:-4907368 None:intergenic
AGTTACATACCCAAAGATGA+TGG 0.521445 3_4:+4907243 Msa0486860:CDS
TTGTGAAAGTCTTTCAGGGA+AGG 0.525415 3_4:-4907364 None:intergenic
TGTGAAAGTCTTTCAGGGAA+GGG 0.533479 3_4:-4907363 None:intergenic
GTTTGAGACAAGGAGAGGGA+AGG 0.575519 3_4:+4907149 Msa0486860:CDS
CATTGTTTGAGACAAGGAGA+GGG 0.612024 3_4:+4907145 Msa0486860:CDS
CCATTGTTTGAGACAAGGAG+AGG 0.612659 3_4:+4907144 Msa0486860:CDS
ATTATCCATTGTTTGAGACA+AGG 0.617883 3_4:+4907139 Msa0486860:CDS
GAAAATAGGGTTCCATCTAA+GGG 0.618382 3_4:-4907334 None:intergenic
TCCATCTAAGGGCTTGACGA+AGG 0.624315 3_4:-4907323 None:intergenic
TCCCTGAAAGACTTTCACAA+AGG 0.699837 3_4:+4907367 Msa0486860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTACTATGTATAAAATA+AGG + chr3_4:4907441-4907460 Msa0486860:intron 10.0%
!! CAATTTATTAATTCATTAAA+AGG + chr3_4:4908041-4908060 Msa0486860:intron 10.0%
!!! TTTATTGTTTGTTTTTAATT+AGG - chr3_4:4909925-4909944 None:intergenic 10.0%
!!! ATTATTTTAACATATGATTG+CGG + chr3_4:4907591-4907610 Msa0486860:intron 15.0%
!!! AAATATTTTGATGAAAGATA+TGG + chr3_4:4908244-4908263 Msa0486860:intron 15.0%
!!! AAATATTTTGGTTAACTTTT+AGG + chr3_4:4908724-4908743 Msa0486860:intron 15.0%
!!! TTTTATGGTGTTTATTTTTT+GGG - chr3_4:4908863-4908882 None:intergenic 15.0%
!!! TTTTTATGGTGTTTATTTTT+TGG - chr3_4:4908864-4908883 None:intergenic 15.0%
!! ATTATTACGAATAAAATTTG+CGG + chr3_4:4909553-4909572 Msa0486860:intron 15.0%
!!! TTTAATTTCATATGATTAAG+TGG - chr3_4:4909895-4909914 None:intergenic 15.0%
!! TTAATTTCTTATTATGTTTG+AGG + chr3_4:4910093-4910112 Msa0486860:intron 15.0%
!!! AAAATATCACAAAGCTTTTT+AGG - chr3_4:4907878-4907897 None:intergenic 20.0%
!!! TTTCAACTCAGATTTAAAAT+AGG - chr3_4:4907963-4907982 None:intergenic 20.0%
!!! TGATTTTGAATGAAAATTGA+TGG + chr3_4:4908011-4908030 Msa0486860:intron 20.0%
!!! ATTGAAGGTAATTTTAATTG+AGG - chr3_4:4909688-4909707 None:intergenic 20.0%
!! ATTAAAATTACCTTCAATGA+TGG + chr3_4:4909690-4909709 Msa0486860:intron 20.0%
!! AAAAAGTTTGCAATGAAAAT+TGG + chr3_4:4909787-4909806 Msa0486860:intron 20.0%
!! AGATTGTTTAATAACGAAAT+TGG + chr3_4:4909996-4910015 Msa0486860:intron 20.0%
!! TTGAAATCACTAAGAAATAA+CGG - chr3_4:4910051-4910070 None:intergenic 20.0%
!!! AACTATGGTTTGGTTTTTAT+TGG + chr3_4:4907298-4907317 Msa0486860:CDS 25.0%
! AACATGTAAACATGTATTAC+TGG - chr3_4:4907565-4907584 None:intergenic 25.0%
! CTCAATCACTTAATTCATAA+AGG - chr3_4:4907670-4907689 None:intergenic 25.0%
!! TTAAATCTGAGTTGAAACTA+TGG + chr3_4:4907966-4907985 Msa0486860:intron 25.0%
!! TAAATCTGAGTTGAAACTAT+GGG + chr3_4:4907967-4907986 Msa0486860:intron 25.0%
!! TACATTTTATGCTCTTTTAG+AGG + chr3_4:4908458-4908477 Msa0486860:intron 25.0%
! ATAGCTCTTTAGCATTATTA+GGG - chr3_4:4908578-4908597 None:intergenic 25.0%
! AATAGCTCTTTAGCATTATT+AGG - chr3_4:4908579-4908598 None:intergenic 25.0%
! TAATAATGCTAAAGAGCTAT+TGG + chr3_4:4908578-4908597 Msa0486860:intron 25.0%
! TCTAGATATGTAAATGTCTT+TGG + chr3_4:4908631-4908650 Msa0486860:intron 25.0%
! CTAGATATGTAAATGTCTTT+GGG + chr3_4:4908632-4908651 Msa0486860:intron 25.0%
! ACCTATAAAGATGGATATAA+AGG + chr3_4:4908686-4908705 Msa0486860:intron 25.0%
! ACCTTTATATCCATCTTTAT+AGG - chr3_4:4908690-4908709 None:intergenic 25.0%
!! GCTCTTTGGTTAAAATATTT+TGG + chr3_4:4908712-4908731 Msa0486860:intron 25.0%
!!! GTTAATTTTGATTCAAGATC+GGG - chr3_4:4909275-4909294 None:intergenic 25.0%
!!! GGTTAATTTTGATTCAAGAT+CGG - chr3_4:4909276-4909295 None:intergenic 25.0%
! GATCTTGAATCAAAATTAAC+CGG + chr3_4:4909275-4909294 Msa0486860:intron 25.0%
! AAACATCAAAACAGATCAAA+AGG + chr3_4:4909354-4909373 Msa0486860:intron 25.0%
! ATTAACCTAAAAGTTAACCT+CGG - chr3_4:4909479-4909498 None:intergenic 25.0%
!!! AAGGTAATTTTAATTGAGGT+GGG - chr3_4:4909684-4909703 None:intergenic 25.0%
! ATATATGTTTCCATCATTGA+AGG - chr3_4:4909703-4909722 None:intergenic 25.0%
!!! ACTTTTTCAGCTAAAAGATT+GGG - chr3_4:4909774-4909793 None:intergenic 25.0%
!!! AACTTTTTCAGCTAAAAGAT+TGG - chr3_4:4909775-4909794 None:intergenic 25.0%
! AATTGGTTATAGAACAATTG+TGG + chr3_4:4909804-4909823 Msa0486860:intron 25.0%
! TGAAATCACTAAGAAATAAC+GGG - chr3_4:4910050-4910069 None:intergenic 25.0%
! ATTATCCATTGTTTGAGACA+AGG + chr3_4:4907139-4907158 Msa0486860:CDS 30.0%
! TTCTCTTTCACTTTGTTTGT+AGG + chr3_4:4907192-4907211 Msa0486860:intron 30.0%
AGAGCAAGTCAATATGAAAT+TGG + chr3_4:4907715-4907734 Msa0486860:intron 30.0%
!!! TCACAAAGCTTTTTAGGTAT+GGG - chr3_4:4907872-4907891 None:intergenic 30.0%
!!! ATCACAAAGCTTTTTAGGTA+TGG - chr3_4:4907873-4907892 None:intergenic 30.0%
!!! CTCTAGTTTTCAAATGAATG+GGG - chr3_4:4908088-4908107 None:intergenic 30.0%
!!! CCTCTAGTTTTCAAATGAAT+GGG - chr3_4:4908089-4908108 None:intergenic 30.0%
CCATTCATTTGAAAACTAGA+GGG + chr3_4:4908087-4908106 Msa0486860:intron 30.0%
! ATTATTGGTGGTTCAATATC+TGG - chr3_4:4908348-4908367 None:intergenic 30.0%
AGATATTGAACCACCAATAA+TGG + chr3_4:4908347-4908366 Msa0486860:intron 30.0%
ACTGTGTTAATCACCATTAT+TGG - chr3_4:4908363-4908382 None:intergenic 30.0%
TAACACAGTATTATCTGTGA+TGG + chr3_4:4908374-4908393 Msa0486860:intron 30.0%
!! CTTCTAAATTTGCTAAGCAT+TGG + chr3_4:4908481-4908500 Msa0486860:intron 30.0%
ATTATTAGGGTAAGTGTCTA+AGG - chr3_4:4908565-4908584 None:intergenic 30.0%
TGATTACTTTGTTACCTTGA+TGG - chr3_4:4908604-4908623 None:intergenic 30.0%
CTCATATCAACCTATAAAGA+TGG + chr3_4:4908677-4908696 Msa0486860:intron 30.0%
! TGAATGAGAGTACAAACAAA+AGG + chr3_4:4908817-4908836 Msa0486860:intron 30.0%
! CTTTTTATGGTTTCTTTCAG+TGG - chr3_4:4909094-4909113 None:intergenic 30.0%
!!! TTATGGTTTTGGGCTTTTTA+TGG - chr3_4:4909107-4909126 None:intergenic 30.0%
! TTTGGATCAGTTATGGTTTT+GGG - chr3_4:4909117-4909136 None:intergenic 30.0%
TTAACCTAAAAGTTAACCTC+GGG - chr3_4:4909478-4909497 None:intergenic 30.0%
!!! GAAGGTAATTTTAATTGAGG+TGG - chr3_4:4909685-4909704 None:intergenic 30.0%
TAGTTCATAAGATCTACCAT+TGG + chr3_4:4909748-4909767 Msa0486860:intron 30.0%
!!! ACACTTGTTCTTTGTTTTTC+AGG - chr3_4:4909838-4909857 None:intergenic 30.0%
! TTGTAGGAATTTGCTCCATT+TGG + chr3_4:4907208-4907227 Msa0486860:intron 35.0%
! TGTAGGAATTTGCTCCATTT+GGG + chr3_4:4907209-4907228 Msa0486860:intron 35.0%
ACTCACTCTATAAACCCAAA+TGG - chr3_4:4907226-4907245 None:intergenic 35.0%
AGTTACATACCCAAAGATGA+TGG + chr3_4:4907243-4907262 Msa0486860:CDS 35.0%
!! TACCCAAAGATGATGGAAAA+TGG + chr3_4:4907250-4907269 Msa0486860:CDS 35.0%
!! ACCCAAAGATGATGGAAAAT+GGG + chr3_4:4907251-4907270 Msa0486860:CDS 35.0%
! ACCCATTTTCCATCATCTTT+GGG - chr3_4:4907255-4907274 None:intergenic 35.0%
! AACCCATTTTCCATCATCTT+TGG - chr3_4:4907256-4907275 None:intergenic 35.0%
!! AAGATGATGGAAAATGGGTT+TGG + chr3_4:4907256-4907275 Msa0486860:CDS 35.0%
GAAAATAGGGTTCCATCTAA+GGG - chr3_4:4907337-4907356 None:intergenic 35.0%
TGAAAATAGGGTTCCATCTA+AGG - chr3_4:4907338-4907357 None:intergenic 35.0%
! TTAGATGGAACCCTATTTTC+AGG + chr3_4:4907337-4907356 Msa0486860:CDS 35.0%
ACCTTTGTGAAAGTCTTTCA+GGG - chr3_4:4907371-4907390 None:intergenic 35.0%
TACCTTTGTGAAAGTCTTTC+AGG - chr3_4:4907372-4907391 None:intergenic 35.0%
TATTACTGGTGTTTGTCGAT+CGG - chr3_4:4907551-4907570 None:intergenic 35.0%
TGTGCAATGGGAAAATCTAA+CGG - chr3_4:4907797-4907816 None:intergenic 35.0%
! ATTTTCCCATTGCACAATAC+CGG + chr3_4:4907801-4907820 Msa0486860:intron 35.0%
CCCATTCATTTGAAAACTAG+AGG + chr3_4:4908086-4908105 Msa0486860:intron 35.0%
!!! CCCTCTAGTTTTCAAATGAA+TGG - chr3_4:4908090-4908109 None:intergenic 35.0%
CACACAAATATGTCCACTTT+GGG - chr3_4:4908315-4908334 None:intergenic 35.0%
ACACACAAATATGTCCACTT+TGG - chr3_4:4908316-4908335 None:intergenic 35.0%
AGTGGACATATTTGTGTGTA+CGG + chr3_4:4908317-4908336 Msa0486860:intron 35.0%
GTGTTAATCACCATTATTGG+TGG - chr3_4:4908360-4908379 None:intergenic 35.0%
TTGTTTGTACTCTCATTCAC+CGG - chr3_4:4908816-4908835 None:intergenic 35.0%
!! AAACAAAAGGCGCTGTATAT+AGG + chr3_4:4908830-4908849 Msa0486860:intron 35.0%
!! GTTGGATATCGTTTTTACAG+TGG - chr3_4:4908955-4908974 None:intergenic 35.0%
! TCTTTCGGATAGGAACTTTT+CGG - chr3_4:4909038-4909057 None:intergenic 35.0%
! CTTTGGATCAGTTATGGTTT+TGG - chr3_4:4909118-4909137 None:intergenic 35.0%
TCAGTTCTTTGGATCAGTTA+TGG - chr3_4:4909124-4909143 None:intergenic 35.0%
!! GATCACTTTTGATTCGAGAT+CGG - chr3_4:4909149-4909168 None:intergenic 35.0%
GATCTCGAATCAAAAGTGAT+CGG + chr3_4:4909148-4909167 Msa0486860:intron 35.0%
!! ACTTTAGGACCAAAACAGAA+GGG + chr3_4:4909179-4909198 Msa0486860:intron 35.0%
CAACCAGCACATAAAAAGTA+TGG + chr3_4:4909306-4909325 Msa0486860:intron 35.0%
!! TTGCCATACTTTTTATGTGC+TGG - chr3_4:4909312-4909331 None:intergenic 35.0%
AAGGAAATAGCTCAACACAA+CGG + chr3_4:4909373-4909392 Msa0486860:intron 35.0%
! GTTTAGGTGTTTAGGATGTT+TGG - chr3_4:4909411-4909430 None:intergenic 35.0%
!! AGCTCTTGTTTGTGGTTTTT+GGG - chr3_4:4909437-4909456 None:intergenic 35.0%
!! TAGCTCTTGTTTGTGGTTTT+TGG - chr3_4:4909438-4909457 None:intergenic 35.0%
! CATTGTTTGAGACAAGGAGA+GGG + chr3_4:4907145-4907164 Msa0486860:CDS 40.0%
! GATGGAAAATGGGTTTGGAT+TGG + chr3_4:4907261-4907280 Msa0486860:CDS 40.0%
GATTGCTTTGTGCTGAACTA+TGG + chr3_4:4907283-4907302 Msa0486860:CDS 40.0%
CTTTGTGCTGAACTATGGTT+TGG + chr3_4:4907288-4907307 Msa0486860:CDS 40.0%
TGTGAAAGTCTTTCAGGGAA+GGG - chr3_4:4907366-4907385 None:intergenic 40.0%
TTGTGAAAGTCTTTCAGGGA+AGG - chr3_4:4907367-4907386 None:intergenic 40.0%
TCCCTGAAAGACTTTCACAA+AGG + chr3_4:4907367-4907386 Msa0486860:CDS 40.0%
CGGTGAATAGCATATATGGT+TGG - chr3_4:4907531-4907550 None:intergenic 40.0%
CGATCGGTGAATAGCATATA+TGG - chr3_4:4907535-4907554 None:intergenic 40.0%
! ATCTGAGTTGAAACTATGGG+TGG + chr3_4:4907970-4907989 Msa0486860:intron 40.0%
TACACACTAAGCTTCTCTTG+TGG - chr3_4:4908411-4908430 None:intergenic 40.0%
GTGTATCTTTCAGATGATGC+TGG + chr3_4:4908426-4908445 Msa0486860:intron 40.0%
ACCTTGAATCTCTTGCAGAA+TGG - chr3_4:4908510-4908529 None:intergenic 40.0%
AGAGATTCAAGGTTGAACCT+AGG + chr3_4:4908517-4908536 Msa0486860:intron 40.0%
AAGGTCTTGAAATACGCACT+TGG - chr3_4:4908546-4908565 None:intergenic 40.0%
TAAAGAGCTATTGGCCATCA+AGG + chr3_4:4908587-4908606 Msa0486860:intron 40.0%
GGATATAAAGGTGAGCTCTT+TGG + chr3_4:4908698-4908717 Msa0486860:intron 40.0%
!! TTAGGTGGTGATGCGTATTT+TGG - chr3_4:4908909-4908928 None:intergenic 40.0%
GTGTAGGAGTCAAATTTAGG+TGG - chr3_4:4908924-4908943 None:intergenic 40.0%
CTCGTGTAGGAGTCAAATTT+AGG - chr3_4:4908927-4908946 None:intergenic 40.0%
AGCTGAATGATCTTTCGGAT+AGG - chr3_4:4909048-4909067 None:intergenic 40.0%
GTGGAAGCTGAATGATCTTT+CGG - chr3_4:4909053-4909072 None:intergenic 40.0%
! TTTTGGTCCTAAAGTCTGGT+GGG - chr3_4:4909174-4909193 None:intergenic 40.0%
!!! TCTGTTTTGGTCCTAAAGTC+TGG - chr3_4:4909178-4909197 None:intergenic 40.0%
!! GACTTTAGGACCAAAACAGA+AGG + chr3_4:4909178-4909197 Msa0486860:intron 40.0%
GTATTTCTCTGGTGTACTGA+GGG - chr3_4:4909214-4909233 None:intergenic 40.0%
!!! CAGTTTTGTTTGGCGTGATT+TGG - chr3_4:4909236-4909255 None:intergenic 40.0%
!!! TGTCTAGCTGCAGTTTTGTT+TGG - chr3_4:4909246-4909265 None:intergenic 40.0%
TTTGATTCAAGATCGGGAGT+TGG - chr3_4:4909269-4909288 None:intergenic 40.0%
!!! ACTTTTTATGTGCTGGTTGC+CGG - chr3_4:4909305-4909324 None:intergenic 40.0%
ATGGCAAACGACATGATATG+AGG + chr3_4:4909325-4909344 Msa0486860:intron 40.0%
AGGAAATAGCTCAACACAAC+GGG + chr3_4:4909374-4909393 Msa0486860:intron 40.0%
! TTTAGGATGTTTGGAGGAAG+CGG - chr3_4:4909402-4909421 None:intergenic 40.0%
! TAGGTGTTTAGGATGTTTGG+AGG - chr3_4:4909408-4909427 None:intergenic 40.0%
TTGGGGTTGTTTAGGTGTTT+AGG - chr3_4:4909419-4909438 None:intergenic 40.0%
!!! TGTGGTTTTTGGGGTTGTTT+AGG - chr3_4:4909427-4909446 None:intergenic 40.0%
!! GCTCTTGTTTGTGGTTTTTG+GGG - chr3_4:4909436-4909455 None:intergenic 40.0%
TGTACTACACTCAACCCTAT+TGG - chr3_4:4909587-4909606 None:intergenic 40.0%
ATAGGGTTGAGTGTAGTACA+AGG + chr3_4:4909587-4909606 Msa0486860:intron 40.0%
TAGGGTTGAGTGTAGTACAA+GGG + chr3_4:4909588-4909607 Msa0486860:intron 40.0%
GTGGGTCAGATACTAAATGT+GGG - chr3_4:4909666-4909685 None:intergenic 40.0%
CCTCTCCTTGTCTCAAACAA+TGG - chr3_4:4907147-4907166 None:intergenic 45.0%
! CCATTGTTTGAGACAAGGAG+AGG + chr3_4:4907144-4907163 Msa0486860:CDS 45.0%
! TTTGAGACAAGGAGAGGGAA+GGG + chr3_4:4907150-4907169 Msa0486860:CDS 45.0%
GGAAGGGTTGCCTGAAAATA+GGG - chr3_4:4907350-4907369 None:intergenic 45.0%
AGTTGGCAGCATTCATGAGT+GGG + chr3_4:4907845-4907864 Msa0486860:intron 45.0%
!! TATCGCGAAGCATTTTCTCG+TGG - chr3_4:4907928-4907947 None:intergenic 45.0%
TGAGAACATGCTACCCAAAG+TGG + chr3_4:4908299-4908318 Msa0486860:intron 45.0%
GCCATTCTGCAAGAGATTCA+AGG + chr3_4:4908506-4908525 Msa0486860:intron 45.0%
!! GGTCTTGTTCGTCTTGAACA+GGG - chr3_4:4908795-4908814 None:intergenic 45.0%
CTGTTCAAGACGAACAAGAC+CGG + chr3_4:4908794-4908813 Msa0486860:intron 45.0%
!! CAAAAGGCGCTGTATATAGG+CGG + chr3_4:4908833-4908852 Msa0486860:intron 45.0%
CACCATAAAAAACACCCCTG+AGG + chr3_4:4908873-4908892 Msa0486860:intron 45.0%
!!! GTCCTCAGGGGTGTTTTTTA+TGG - chr3_4:4908878-4908897 None:intergenic 45.0%
!!! GTGGTGATGCGTATTTTGGT+GGG - chr3_4:4908905-4908924 None:intergenic 45.0%
!! TGGTGGGTGTTTTTCTTTGG+GGG - chr3_4:4908998-4909017 None:intergenic 45.0%
!!! GTGGTGGGTGTTTTTCTTTG+GGG - chr3_4:4908999-4909018 None:intergenic 45.0%
!!! GGTGGTGGGTGTTTTTCTTT+GGG - chr3_4:4909000-4909019 None:intergenic 45.0%
!!! TGGTGGTGGGTGTTTTTCTT+TGG - chr3_4:4909001-4909020 None:intergenic 45.0%
! GGATAGGAACTTTTCGGATG+TGG - chr3_4:4909032-4909051 None:intergenic 45.0%
TTTCAGTGGATCAGAGGTTG+AGG - chr3_4:4909080-4909099 None:intergenic 45.0%
GGTTTCTTTCAGTGGATCAG+AGG - chr3_4:4909086-4909105 None:intergenic 45.0%
!! GTTTTGGTCCTAAAGTCTGG+TGG - chr3_4:4909175-4909194 None:intergenic 45.0%
GGTATTTCTCTGGTGTACTG+AGG - chr3_4:4909215-4909234 None:intergenic 45.0%
!! GGCGTGATTTGGTATTTCTC+TGG - chr3_4:4909225-4909244 None:intergenic 45.0%
ATCAAAATTAACCGGCCCAC+CGG + chr3_4:4909283-4909302 Msa0486860:intron 45.0%
GCAAACGACATGATATGAGG+TGG + chr3_4:4909328-4909347 Msa0486860:intron 45.0%
TTAGGATGTTTGGAGGAAGC+GGG - chr3_4:4909401-4909420 None:intergenic 45.0%
! TCGTCACTAGCTCTTGTTTG+TGG - chr3_4:4909445-4909464 None:intergenic 45.0%
! TGGACCCGAGGTTAACTTTT+AGG + chr3_4:4909471-4909490 Msa0486860:intron 45.0%
AGGGTTGAGTGTAGTACAAG+GGG + chr3_4:4909589-4909608 Msa0486860:intron 45.0%
! CTAGAGTGCCACAACATCAA+TGG + chr3_4:4909612-4909631 Msa0486860:intron 45.0%
CGATTCGACCATTGATGTTG+TGG - chr3_4:4909623-4909642 None:intergenic 45.0%
GGTGGGTCAGATACTAAATG+TGG - chr3_4:4909667-4909686 None:intergenic 45.0%
CAGCTAAAAGATTGGGCCAA+TGG - chr3_4:4909767-4909786 None:intergenic 45.0%
!! TAATTAATTAAATATAGTTA+TGG - chr3_4:4907427-4907446 None:intergenic 5.0%
! GTTTGAGACAAGGAGAGGGA+AGG + chr3_4:4907149-4907168 Msa0486860:CDS 50.0%
TCCTTCGTCAAGCCCTTAGA+TGG + chr3_4:4907322-4907341 Msa0486860:CDS 50.0%
TCCATCTAAGGGCTTGACGA+AGG - chr3_4:4907326-4907345 None:intergenic 50.0%
GGGAAGGGTTGCCTGAAAAT+AGG - chr3_4:4907351-4907370 None:intergenic 50.0%
GTGCACAATACAGGAGCAGT+TGG + chr3_4:4907828-4907847 Msa0486860:intron 50.0%
CAGTTGGCAGCATTCATGAG+TGG + chr3_4:4907844-4907863 Msa0486860:intron 50.0%
TGGAAGAACGCGAATTGGGT+TGG - chr3_4:4907908-4907927 None:intergenic 50.0%
CTCGTGGAAGAACGCGAATT+GGG - chr3_4:4907912-4907931 None:intergenic 50.0%
TCTCGTGGAAGAACGCGAAT+TGG - chr3_4:4907913-4907932 None:intergenic 50.0%
AAATACGCACTTGGCGACCT+AGG - chr3_4:4908537-4908556 None:intergenic 50.0%
GTTCGTCTTGAACAGGGATC+TGG - chr3_4:4908789-4908808 None:intergenic 50.0%
!! CGGTCTTGTTCGTCTTGAAC+AGG - chr3_4:4908796-4908815 None:intergenic 50.0%
! TTTGGTGGGTGTTGTCCTCA+GGG - chr3_4:4908891-4908910 None:intergenic 50.0%
!! TTTTGGTGGGTGTTGTCCTC+AGG - chr3_4:4908892-4908911 None:intergenic 50.0%
!! GGTGGTGATGCGTATTTTGG+TGG - chr3_4:4908906-4908925 None:intergenic 50.0%
TACAGTGGTCGTTCTCGTGT+AGG - chr3_4:4908940-4908959 None:intergenic 50.0%
TTTGGGGGGAGTAGTGACAA+CGG - chr3_4:4908983-4909002 None:intergenic 50.0%
! GGTGGGTGTTTTTCTTTGGG+GGG - chr3_4:4908997-4909016 None:intergenic 50.0%
TTTCGGATGTGGCTCAGCTT+TGG - chr3_4:4909021-4909040 None:intergenic 50.0%
CGAGATCGGAGTCAGTTCTT+TGG - chr3_4:4909135-4909154 None:intergenic 50.0%
!! TTTATGTGCTGGTTGCCGGT+GGG - chr3_4:4909301-4909320 None:intergenic 50.0%
!!! TTTTATGTGCTGGTTGCCGG+TGG - chr3_4:4909302-4909321 None:intergenic 50.0%
AGAGCTAGTGACGACGAACA+TGG + chr3_4:4909451-4909470 Msa0486860:intron 50.0%
TTTGCGGCATAGCAGCCAAT+AGG + chr3_4:4909569-4909588 Msa0486860:intron 50.0%
TTGCGGCATAGCAGCCAATA+GGG + chr3_4:4909570-4909589 Msa0486860:intron 50.0%
CCGCTCCGGTATTGTGCAAT+GGG - chr3_4:4907809-4907828 None:intergenic 55.0%
CCCATTGCACAATACCGGAG+CGG + chr3_4:4907806-4907825 Msa0486860:intron 55.0%
ACCGCTCCGGTATTGTGCAA+TGG - chr3_4:4907810-4907829 None:intergenic 55.0%
TCCTGTATTGTGCACCGCTC+CGG - chr3_4:4907823-4907842 None:intergenic 55.0%
! TTGGTGGGTGTTGTCCTCAG+GGG - chr3_4:4908890-4908909 None:intergenic 55.0%
GTAGTGACAACGGGTGGTGT+TGG - chr3_4:4908973-4908992 None:intergenic 55.0%
TTGGGGGGAGTAGTGACAAC+GGG - chr3_4:4908982-4909001 None:intergenic 55.0%
! TGTGGCTCAGCTTTGGTGGT+GGG - chr3_4:4909014-4909033 None:intergenic 55.0%
! ATGTGGCTCAGCTTTGGTGG+TGG - chr3_4:4909015-4909034 None:intergenic 55.0%
GATCAGAGGTTGAGGAGTGG+TGG - chr3_4:4909072-4909091 None:intergenic 55.0%
GTGGATCAGAGGTTGAGGAG+TGG - chr3_4:4909075-4909094 None:intergenic 55.0%
TGATCGGCCCACCAGACTTT+AGG + chr3_4:4909164-4909183 Msa0486860:intron 55.0%
!!! TGAGGGGTGCCCTTCTGTTT+TGG - chr3_4:4909191-4909210 None:intergenic 55.0%
TCTGGTGTACTGAGGGTGAG+GGG - chr3_4:4909207-4909226 None:intergenic 55.0%
CTCTGGTGTACTGAGGGTGA+GGG - chr3_4:4909208-4909227 None:intergenic 55.0%
TCTCTGGTGTACTGAGGGTG+AGG - chr3_4:4909209-4909228 None:intergenic 55.0%
ACCGGAGCGGTGCACAATAC+AGG + chr3_4:4907819-4907838 Msa0486860:intron 60.0%
! CGGATGTGGCTCAGCTTTGG+TGG - chr3_4:4909018-4909037 None:intergenic 60.0%
TGACGACGAACATGGACCCG+AGG + chr3_4:4909459-4909478 Msa0486860:intron 60.0%
GGGGGAGTAGTGACAACGGG+TGG - chr3_4:4908979-4908998 None:intergenic 65.0%
!! TGTGCTGGTTGCCGGTGGGC+CGG - chr3_4:4909297-4909316 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 4907123 4910136 4907123 ID=Msa0486860;Name=Msa0486860
chr3_4 mRNA 4907123 4910136 4907123 ID=Msa0486860-mRNA-1;Parent=Msa0486860;Name=Msa0486860-mRNA-1;_AED=0.49;_eAED=0.54;_QI=0|0|0|1|0|0|3|0|76
chr3_4 exon 4907123 4907181 4907123 ID=Msa0486860-mRNA-1:exon:1935;Parent=Msa0486860-mRNA-1
chr3_4 exon 4907239 4907388 4907239 ID=Msa0486860-mRNA-1:exon:1936;Parent=Msa0486860-mRNA-1
chr3_4 exon 4910115 4910136 4910115 ID=Msa0486860-mRNA-1:exon:1937;Parent=Msa0486860-mRNA-1
chr3_4 CDS 4907123 4907181 4907123 ID=Msa0486860-mRNA-1:cds;Parent=Msa0486860-mRNA-1
chr3_4 CDS 4907239 4907388 4907239 ID=Msa0486860-mRNA-1:cds;Parent=Msa0486860-mRNA-1
chr3_4 CDS 4910115 4910136 4910115 ID=Msa0486860-mRNA-1:cds;Parent=Msa0486860-mRNA-1
Gene Sequence

>Msa0486860

ATGGGGAAAGAGGAGTATTATCCATTGTTTGAGACAAGGAGAGGGAAGGGAAGACTCATAGTGAGTTACATACCCAAAGATGATGGAAAATGGGTTTGGATTGGATTGCTTTGTGCTGAACTATGGTTTGGTTTTTATTGGTTCCTTCGTCAAGCCCTTAGATGGAACCCTATTTTCAGGCAACCCTTCCCTGAAAGACTTTCACAAAGGATTTTATCTTCAAAAAGATAA

Protein sequence

>Msa0486860

MGKEEYYPLFETRRGKGRLIVSYIPKDDGKWVWIGLLCAELWFGFYWFLRQALRWNPIFRQPFPERLSQRILSSKR*