AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0773290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0773290 MtrunA17_Chr5g0426921 98.634 366 3 1 1 366 1 364 0.0 729
Msa0773290 MtrunA17_Chr3g0132551 63.760 367 123 4 7 365 4 368 2.00e-169 477
Msa0773290 MtrunA17_Chr3g0132561 54.795 365 121 5 9 365 5 333 1.47e-136 392
Msa0773290 MtrunA17_Chr4g0055041 35.312 337 209 3 27 360 42 372 5.22e-65 211
Msa0773290 MtrunA17_Chr2g0296491 35.345 348 198 7 12 358 65 386 2.79e-63 207
Msa0773290 MtrunA17_Chr2g0283381 33.134 335 216 2 22 356 44 370 7.49e-59 195
Msa0773290 MtrunA17_Chr3g0102091 32.520 369 234 5 3 366 30 388 1.11e-56 189
Msa0773290 MtrunA17_Chr7g0249781 34.111 343 213 4 14 355 23 353 8.59e-56 186
Msa0773290 MtrunA17_Chr8g0346091 32.344 337 201 3 20 350 53 368 2.49e-52 177
Msa0773290 MtrunA17_Chr2g0296481 34.579 321 189 7 41 355 72 377 2.58e-52 178
Msa0773290 MtrunA17_Chr6g0483671 32.653 147 99 0 198 344 5 151 6.13e-23 94.4
Msa0773290 MtrunA17_Chr2g0313931 36.719 128 68 2 22 148 34 149 1.56e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0773290 AT2G33750.2 58.721 344 135 2 17 360 3 339 2.10e-141 405
Msa0773290 AT1G28220.1 55.490 337 143 2 17 353 1 330 8.15e-138 396
Msa0773290 AT2G33750.1 56.901 355 135 3 17 360 3 350 1.06e-137 396
Msa0773290 AT1G28230.1 58.621 348 138 3 17 359 1 347 4.98e-136 392
Msa0773290 AT4G18220.1 35.404 322 194 5 41 361 66 374 1.01e-56 190
Msa0773290 AT4G18210.1 32.964 361 221 5 7 361 31 376 5.28e-53 180
Msa0773290 AT4G18205.1 34.891 321 192 4 41 357 61 368 1.98e-51 176
Msa0773290 AT4G18197.1 32.722 327 203 4 41 363 64 377 4.42e-46 162
Msa0773290 AT1G30840.2 33.628 339 207 6 8 342 12 336 8.16e-45 158
Msa0773290 AT1G30840.1 33.628 339 207 6 8 342 12 336 8.16e-45 158
Msa0773290 AT1G44750.6 32.231 363 224 6 3 355 6 356 1.82e-44 157
Msa0773290 AT1G44750.2 32.231 363 224 6 3 355 6 356 1.82e-44 157
Msa0773290 AT1G44750.1 32.231 363 224 6 3 355 18 368 2.68e-44 157
Msa0773290 AT4G18195.1 32.492 317 201 3 41 355 67 372 3.93e-44 157
Msa0773290 AT1G44750.7 35.600 250 159 2 107 355 44 292 2.87e-43 152
Msa0773290 AT1G44750.5 35.600 250 159 2 107 355 44 292 2.87e-43 152
Msa0773290 AT1G44750.4 35.600 250 159 2 107 355 44 292 2.87e-43 152
Msa0773290 AT1G44750.8 35.600 250 159 2 107 355 44 292 2.87e-43 152
Msa0773290 AT1G44750.3 35.600 250 159 2 107 355 44 292 2.87e-43 152
Msa0773290 AT4G18190.1 32.329 365 228 6 3 361 20 371 1.88e-42 152
Msa0773290 AT2G24220.1 33.535 331 205 3 7 337 25 340 2.84e-41 149
Msa0773290 AT2G24220.2 33.535 331 205 3 7 337 43 358 3.23e-41 149
Msa0773290 AT4G08700.1 27.246 345 235 4 14 357 30 359 7.08e-37 137
Msa0773290 AT5G41160.1 26.776 366 243 7 5 357 9 362 3.26e-35 132
Msa0773290 AT1G19770.1 27.419 310 207 5 51 349 88 390 9.54e-25 104
Msa0773290 AT1G57943.2 28.399 331 204 9 49 365 84 395 9.83e-24 101
Msa0773290 AT1G57943.1 28.399 331 204 9 49 365 85 396 1.00e-23 101
Msa0773290 AT1G57980.1 27.576 330 207 8 49 365 82 392 7.77e-21 93.2
Msa0773290 AT1G57990.1 25.688 327 217 8 49 365 78 388 8.52e-20 90.1
Msa0773290 AT1G47603.1 26.879 346 215 10 26 350 53 381 3.97e-18 85.5
Msa0773290 AT1G09860.1 27.492 331 201 13 49 357 69 382 9.91e-15 75.1
Msa0773290 AT1G75470.1 20.902 244 179 4 124 355 144 385 1.11e-12 68.9

Find 82 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTGGTGCTCTCACTTT+GGG 0.109096 5_2:+48130671 Msa0773290:CDS
GTTAAGGGAATGAGAATTAT+TGG 0.202075 5_2:-48128815 None:intergenic
TGTGCCTCTTCATTGCTATC+TGG 0.276545 5_2:+48130564 Msa0773290:CDS
AATTAAAACAAAATGAAAAT+AGG 0.291059 5_2:-48130938 None:intergenic
TGTTGTTGCCGTTAGGGTTT+TGG 0.296547 5_2:-48128874 None:intergenic
GACCCTTGGGAGTGTTGTTT+TGG 0.297124 5_2:+48129123 Msa0773290:CDS
AACAGCTAAGATTTCAGTTA+TGG 0.309424 5_2:-48130610 None:intergenic
TTGGCTTCTGCTGCTTTGTA+TGG 0.317318 5_2:+48129220 Msa0773290:CDS
TTGCTTTGGTGCTCTCACTT+TGG 0.319968 5_2:+48130670 Msa0773290:CDS
GGATTGAGTTTAGTATTAGA+AGG 0.332698 5_2:-48128688 None:intergenic
TCTTAACATGTAAAGAAGTA+TGG 0.337721 5_2:-48128546 None:intergenic
TATTACTTATTCTCTTGTTA+TGG 0.358957 5_2:+48129291 Msa0773290:CDS
TCTACTAAGGATTATGTGAT+TGG 0.363277 5_2:+48129184 Msa0773290:CDS
AGCAGAGAAAGGGGTTGCTT+TGG 0.380450 5_2:+48130656 Msa0773290:CDS
TTATTATTGTTGTTGCCGTT+AGG 0.386452 5_2:-48128881 None:intergenic
TTGTGGTCATTCCTCAAGTT+GGG 0.393893 5_2:-48130865 None:intergenic
ACAGCTAAGATTTCAGTTAT+GGG 0.401537 5_2:-48130609 None:intergenic
TTAAGGGAATGAGAATTATT+GGG 0.403587 5_2:-48128814 None:intergenic
AGAAATTTCAAGCAGAGAAA+GGG 0.404504 5_2:+48130646 Msa0773290:CDS
TATTATTGTTGTTGCCGTTA+GGG 0.409224 5_2:-48128880 None:intergenic
ACCACCTTTGTTTATCGCTT+CGG 0.421218 5_2:+48128922 Msa0773290:CDS
GAGAAATTTCAAGCAGAGAA+AGG 0.424086 5_2:+48130645 Msa0773290:CDS
TTTGTGGTCATTCCTCAAGT+TGG 0.431393 5_2:-48130866 None:intergenic
TTGAAATCCCTTGCTTCCCT+TGG 0.436924 5_2:-48130453 None:intergenic
AGCGGTAACGGTAACGGTTG+TGG 0.438617 5_2:-48128850 None:intergenic
GAAGCAAGGGATTTCAAGCT+TGG 0.447995 5_2:+48130459 Msa0773290:CDS
ATTATTCTTTCCACCATGGC+TGG 0.459579 5_2:-48128623 None:intergenic
GCCATACACGTTTGCCGCCA+TGG 0.460981 5_2:-48128763 None:intergenic
AAGCAAGGGATTTCAAGCTT+GGG 0.461079 5_2:+48130460 Msa0773290:CDS
TCCATGGCGGCAAACGTGTA+TGG 0.467259 5_2:+48128762 Msa0773290:CDS
AAAATAGGATAAAATTTGAC+GGG 0.470242 5_2:-48130923 None:intergenic
ACTTGTTGGTGAGTCTACTA+AGG 0.477683 5_2:+48129171 Msa0773290:CDS
GTGATTGAATGAAGACTTTG+AGG 0.480812 5_2:-48130762 None:intergenic
TTGGGAAGGCAGATGTTTCA+AGG 0.487413 5_2:-48128796 None:intergenic
CGATTTCGCAGGTGATTCCA+AGG 0.488583 5_2:+48130436 Msa0773290:intron
TGGTCCACCACATGTTCCTA+TGG 0.488999 5_2:-48128717 None:intergenic
TTTGGTAGCGGTAACGGTAA+CGG 0.493276 5_2:-48128856 None:intergenic
GTGGATGTGAGAAATGGTTA+AGG 0.494562 5_2:-48128831 None:intergenic
GCTAATTATTCTTTCCACCA+TGG 0.494814 5_2:-48128627 None:intergenic
GATGGTGGAGATAGACTTGT+TGG 0.502081 5_2:+48129157 Msa0773290:CDS
TTTATCGCTTCGGCAGTCAT+CGG 0.508139 5_2:+48128932 Msa0773290:CDS
CACATGTTCCTATGGCTAAG+AGG 0.511689 5_2:-48128709 None:intergenic
AGCAAATAATTAACCAGCCA+TGG 0.520477 5_2:+48128610 Msa0773290:exon
GTAGAGGTAGTCGTCTAAAC+CGG 0.524198 5_2:-48128963 None:intergenic
GAAAATAGGATAAAATTTGA+CGG 0.529918 5_2:-48130924 None:intergenic
TTATAAACCAACTCCAACAA+CGG 0.529943 5_2:-48129253 None:intergenic
ACGGTTGTGGATGTGAGAAA+TGG 0.530168 5_2:-48128837 None:intergenic
GAAATTTCAAGCAGAGAAAG+GGG 0.546511 5_2:+48130647 Msa0773290:CDS
GCTTTGGTGCTCTCACTTTG+GGG 0.547915 5_2:+48130672 Msa0773290:CDS
TGGATGTGAGAAATGGTTAA+GGG 0.553222 5_2:-48128830 None:intergenic
AGGTGATTCCAAGGGAAGCA+AGG 0.563127 5_2:+48130445 Msa0773290:intron
TTAATTATTTGCTAGAGTAG+AGG 0.564550 5_2:-48128600 None:intergenic
CGGTAGACGCTTTATGCCGC+AGG 0.567407 5_2:-48128987 None:intergenic
CTGCGGCATAAAGCGTCTAC+CGG 0.571271 5_2:+48128988 Msa0773290:CDS
GCAGTCATCGGAGTTCTCAC+CGG 0.580044 5_2:+48128944 Msa0773290:CDS
ATGCGTTTATACTTCATCCA+TGG 0.581468 5_2:+48128746 Msa0773290:CDS
AGCAAGGGATTTCAAGCTTG+GGG 0.584822 5_2:+48130461 Msa0773290:CDS
AGTACTATGTTGTGCTAGTG+TGG 0.588131 5_2:+48130490 Msa0773290:CDS
CTCTTAGCCATAGGAACATG+TGG 0.591598 5_2:+48128710 Msa0773290:CDS
CTAGCTTTGTACCCAACTTG+AGG 0.592540 5_2:+48130854 Msa0773290:three_prime_UTR
AACTCAATCCTCTTAGCCAT+AGG 0.604730 5_2:+48128701 Msa0773290:CDS
AATACCAGATAGCAATGAAG+AGG 0.606353 5_2:-48130568 None:intergenic
GTGCCAAAACAACACTCCCA+AGG 0.608152 5_2:-48129126 None:intergenic
TGCCAAAACAACACTCCCAA+GGG 0.608894 5_2:-48129125 None:intergenic
GGGAATGAGAATTATTGGGA+AGG 0.610936 5_2:-48128810 None:intergenic
GGTGATTCCAAGGGAAGCAA+GGG 0.617537 5_2:+48130446 Msa0773290:intron
CGCGGTGAAAGCTAAGTGTG+AGG 0.632940 5_2:-48129035 None:intergenic
AAGTATAAACGCATTACTAG+TGG 0.641109 5_2:-48128737 None:intergenic
TACCGCTACCAAAACCCTAA+CGG 0.646649 5_2:+48128866 Msa0773290:CDS
GCTTTATGCCGCAGGCGTAG+AGG 0.652914 5_2:-48128979 None:intergenic
TTGGCACTGAATTCTGATGG+TGG 0.661099 5_2:+48129142 Msa0773290:CDS
GATTTCGCAGGTGATTCCAA+GGG 0.661936 5_2:+48130437 Msa0773290:intron
GACGACTACCTCTACGCCTG+CGG 0.669034 5_2:+48128971 Msa0773290:CDS
CGTTTATACTTCATCCATGG+CGG 0.677695 5_2:+48128749 Msa0773290:CDS
TTAGCCATAGGAACATGTGG+TGG 0.677866 5_2:+48128713 Msa0773290:CDS
AAATAATTAACCAGCCATGG+TGG 0.679882 5_2:+48128613 Msa0773290:exon
ACTGCCGAAGCGATAAACAA+AGG 0.695167 5_2:-48128926 None:intergenic
ATTAACGAAGAAGTTGACAC+CGG 0.698512 5_2:-48129007 None:intergenic
GCCGAAGCGATAAACAAAGG+TGG 0.698965 5_2:-48128923 None:intergenic
AAATAGGATAAAATTTGACG+GGG 0.721060 5_2:-48130922 None:intergenic
TAGTGTGGAGTGCTATAATG+TGG 0.749239 5_2:+48130505 Msa0773290:CDS
CTCACACTTAGCTTTCACCG+CGG 0.755684 5_2:+48129036 Msa0773290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTAATTCTATTTTATTT+TGG - chr5_2:48129854-48129873 None:intergenic 10.0%
!! AATAAAATAGAATTAGAATA+AGG + chr5_2:48129855-48129874 Msa0773290:intron 10.0%
!! ATTAATAATTCAATATCAAT+GGG - chr5_2:48129942-48129961 None:intergenic 10.0%
!!! TTTCTTTTAATTCTTTATTT+AGG + chr5_2:48130091-48130110 Msa0773290:intron 10.0%
!! AATTAAAACAAAATGAAAAT+AGG - chr5_2:48130941-48130960 None:intergenic 10.0%
!!! TTTTCATTTTGTTTTAATTT+TGG + chr5_2:48130942-48130961 Msa0773290:three_prime_UTR 10.0%
!!! TTTCATTTTGTTTTAATTTT+GGG + chr5_2:48130943-48130962 Msa0773290:three_prime_UTR 10.0%
!! TTAGATTTATTTATTGTATG+TGG - chr5_2:48129650-48129669 None:intergenic 15.0%
!! CATTAATAATTCAATATCAA+TGG - chr5_2:48129943-48129962 None:intergenic 15.0%
!!! TAAATTTCTTTTGATTCTAT+TGG + chr5_2:48130117-48130136 Msa0773290:intron 15.0%
!!! ATCTAAAACATTTTTTCTAT+TGG + chr5_2:48130212-48130231 Msa0773290:intron 15.0%
!!! TTTTTTTTTTAGATAACAAG+AGG + chr5_2:48130315-48130334 Msa0773290:intron 15.0%
!!! TTTTTTTTTAGATAACAAGA+GGG + chr5_2:48130316-48130335 Msa0773290:intron 15.0%
!! GTAATAAATAATTTCTCTAT+TGG - chr5_2:48130397-48130416 None:intergenic 15.0%
!! AAAAATGAAAAATAGAGAAA+TGG + chr5_2:48130734-48130753 Msa0773290:CDS 15.0%
!! TATTACTTATTCTCTTGTTA+TGG + chr5_2:48129291-48129310 Msa0773290:CDS 20.0%
!!! TTTTTGTTTATAACAGTGAT+TGG - chr5_2:48129576-48129595 None:intergenic 20.0%
!! ATAGTAGAATTAGAATATTG+TGG + chr5_2:48129826-48129845 Msa0773290:intron 20.0%
!! AATAAAAAGAGAGCAATATT+CGG - chr5_2:48129899-48129918 None:intergenic 20.0%
!!! TTTTTATTTCTCAAAACTTG+TGG + chr5_2:48129911-48129930 Msa0773290:intron 20.0%
!! CTAAGAATAGTTATTACATT+TGG + chr5_2:48129998-48130017 Msa0773290:intron 20.0%
!! AAACTTAAAACCTAAATTGT+GGG - chr5_2:48130074-48130093 None:intergenic 20.0%
!!! ACCAATTCTATTTTTCTATT+TGG + chr5_2:48130148-48130167 Msa0773290:intron 20.0%
!! ACCAAATAGAAAAATAGAAT+TGG - chr5_2:48130152-48130171 None:intergenic 20.0%
!!! GTAATGATGTTATTTTTGTT+TGG + chr5_2:48130795-48130814 Msa0773290:three_prime_UTR 20.0%
!!! TTTTGAATTGTCAATATTGT+AGG + chr5_2:48130831-48130850 Msa0773290:three_prime_UTR 20.0%
!! AAAATAGGATAAAATTTGAC+GGG - chr5_2:48130926-48130945 None:intergenic 20.0%
!! GAAAATAGGATAAAATTTGA+CGG - chr5_2:48130927-48130946 None:intergenic 20.0%
! TCTTAACATGTAAAGAAGTA+TGG - chr5_2:48128549-48128568 None:intergenic 25.0%
!! TTAATTATTTGCTAGAGTAG+AGG - chr5_2:48128603-48128622 None:intergenic 25.0%
! TTAAGGGAATGAGAATTATT+GGG - chr5_2:48128817-48128836 None:intergenic 25.0%
!!! GATTGGTTTTGTTATGATAT+TGG + chr5_2:48129201-48129220 Msa0773290:CDS 25.0%
!! GATCATAGACAATGATTTTA+AGG + chr5_2:48129366-48129385 Msa0773290:CDS 25.0%
! ATAAAAAGAGAGCAATATTC+GGG - chr5_2:48129898-48129917 None:intergenic 25.0%
! ATTCCAATTCAATTTACGTA+AGG + chr5_2:48130032-48130051 Msa0773290:intron 25.0%
! AATCCTTACGTAAATTGAAT+TGG - chr5_2:48130038-48130057 None:intergenic 25.0%
! GAAACTTAAAACCTAAATTG+TGG - chr5_2:48130075-48130094 None:intergenic 25.0%
!! CAAAATGTCTTAATCTTTTG+TGG - chr5_2:48130885-48130904 None:intergenic 25.0%
! AAATAGGATAAAATTTGACG+GGG - chr5_2:48130925-48130944 None:intergenic 25.0%
GGATTGAGTTTAGTATTAGA+AGG - chr5_2:48128691-48128710 None:intergenic 30.0%
AAGTATAAACGCATTACTAG+TGG - chr5_2:48128740-48128759 None:intergenic 30.0%
GTTAAGGGAATGAGAATTAT+TGG - chr5_2:48128818-48128837 None:intergenic 30.0%
! TATTATTGTTGTTGCCGTTA+GGG - chr5_2:48128883-48128902 None:intergenic 30.0%
! TTATTATTGTTGTTGCCGTT+AGG - chr5_2:48128884-48128903 None:intergenic 30.0%
TCTACTAAGGATTATGTGAT+TGG + chr5_2:48129184-48129203 Msa0773290:CDS 30.0%
TTATAAACCAACTCCAACAA+CGG - chr5_2:48129256-48129275 None:intergenic 30.0%
AATTGTGAGTGTACAAAGTA+TGG - chr5_2:48129434-48129453 None:intergenic 30.0%
AATTGTGAGTGTACAAAGTA+TGG - chr5_2:48129434-48129453 None:intergenic 30.0%
TGTTTATAACAGTGATTGGA+GGG - chr5_2:48129572-48129591 None:intergenic 30.0%
TTGTTTATAACAGTGATTGG+AGG - chr5_2:48129573-48129592 None:intergenic 30.0%
! CATTCTAAAGACACACTTAA+TGG - chr5_2:48129753-48129772 None:intergenic 30.0%
TAAAAAGAGAGCAATATTCG+GGG - chr5_2:48129897-48129916 None:intergenic 30.0%
CTATTCTTAGATTCAATACG+TGG - chr5_2:48129988-48130007 None:intergenic 30.0%
! ATGTGGCAATTTTTCTTCTT+AGG + chr5_2:48130522-48130541 Msa0773290:CDS 30.0%
ACAGCTAAGATTTCAGTTAT+GGG - chr5_2:48130612-48130631 None:intergenic 30.0%
AACAGCTAAGATTTCAGTTA+TGG - chr5_2:48130613-48130632 None:intergenic 30.0%
AGAAATTTCAAGCAGAGAAA+GGG + chr5_2:48130646-48130665 Msa0773290:CDS 30.0%
AGCAAATAATTAACCAGCCA+TGG + chr5_2:48128610-48128629 Msa0773290:exon 35.0%
AAATAATTAACCAGCCATGG+TGG + chr5_2:48128613-48128632 Msa0773290:exon 35.0%
GCTAATTATTCTTTCCACCA+TGG - chr5_2:48128630-48128649 None:intergenic 35.0%
ATGCGTTTATACTTCATCCA+TGG + chr5_2:48128746-48128765 Msa0773290:CDS 35.0%
TGGATGTGAGAAATGGTTAA+GGG - chr5_2:48128833-48128852 None:intergenic 35.0%
ATTAACGAAGAAGTTGACAC+CGG - chr5_2:48129010-48129029 None:intergenic 35.0%
!! TCTATTGTTTTGTTGACCCT+TGG + chr5_2:48129109-48129128 Msa0773290:CDS 35.0%
!! CTATTGTTTTGTTGACCCTT+GGG + chr5_2:48129110-48129129 Msa0773290:CDS 35.0%
!!! TGGATTTGTTTTACCGTTGT+TGG + chr5_2:48129240-48129259 Msa0773290:CDS 35.0%
!!! CTACTTTGTTTTGCGTTGTT+GGG + chr5_2:48129341-48129360 Msa0773290:CDS 35.0%
TGAGACACAGTACATTTGTT+TGG - chr5_2:48129723-48129742 None:intergenic 35.0%
AAAAAGAGAGCAATATTCGG+GGG - chr5_2:48129896-48129915 None:intergenic 35.0%
CTAAATTGTGGGACTAAGAT+TGG - chr5_2:48130063-48130082 None:intergenic 35.0%
CAATCTTAGTCCCACAATTT+AGG + chr5_2:48130061-48130080 Msa0773290:intron 35.0%
! TTTTTCTTCTTAGGAGCGAT+TGG + chr5_2:48130531-48130550 Msa0773290:CDS 35.0%
AATACCAGATAGCAATGAAG+AGG - chr5_2:48130571-48130590 None:intergenic 35.0%
GAGAAATTTCAAGCAGAGAA+AGG + chr5_2:48130645-48130664 Msa0773290:CDS 35.0%
GAAATTTCAAGCAGAGAAAG+GGG + chr5_2:48130647-48130666 Msa0773290:CDS 35.0%
GTGATTGAATGAAGACTTTG+AGG - chr5_2:48130765-48130784 None:intergenic 35.0%
ATTATTCTTTCCACCATGGC+TGG - chr5_2:48128626-48128645 None:intergenic 40.0%
AACTCAATCCTCTTAGCCAT+AGG + chr5_2:48128701-48128720 Msa0773290:CDS 40.0%
CGTTTATACTTCATCCATGG+CGG + chr5_2:48128749-48128768 Msa0773290:CDS 40.0%
GGGAATGAGAATTATTGGGA+AGG - chr5_2:48128813-48128832 None:intergenic 40.0%
GTGGATGTGAGAAATGGTTA+AGG - chr5_2:48128834-48128853 None:intergenic 40.0%
! ACCACCTTTGTTTATCGCTT+CGG + chr5_2:48128922-48128941 Msa0773290:CDS 40.0%
AAGAAAAAACGCGAAAACCG+CGG - chr5_2:48129056-48129075 None:intergenic 40.0%
!! GTTTTGGCACTGAATTCTGA+TGG + chr5_2:48129139-48129158 Msa0773290:CDS 40.0%
! ACTTGTTGGTGAGTCTACTA+AGG + chr5_2:48129171-48129190 Msa0773290:CDS 40.0%
! TGTTTTACCGTTGTTGGAGT+TGG + chr5_2:48129246-48129265 Msa0773290:CDS 40.0%
!!! GCTACTTTGTTTTGCGTTGT+TGG + chr5_2:48129340-48129359 Msa0773290:CDS 40.0%
AAAAGAGAGCAATATTCGGG+GGG - chr5_2:48129895-48129914 None:intergenic 40.0%
!!! GGTAGTTCTCTCTTTTTTCC+GGG - chr5_2:48130348-48130367 None:intergenic 40.0%
!!! GGGTAGTTCTCTCTTTTTTC+CGG - chr5_2:48130349-48130368 None:intergenic 40.0%
AACTACCCCTTAACAAAACG+CGG + chr5_2:48130361-48130380 Msa0773290:intron 40.0%
! AATGAGTATTGCGATTTCGC+AGG + chr5_2:48130425-48130444 Msa0773290:intron 40.0%
AAGCAAGGGATTTCAAGCTT+GGG + chr5_2:48130460-48130479 Msa0773290:CDS 40.0%
AGTACTATGTTGTGCTAGTG+TGG + chr5_2:48130490-48130509 Msa0773290:CDS 40.0%
! TAGTGTGGAGTGCTATAATG+TGG + chr5_2:48130505-48130524 Msa0773290:CDS 40.0%
TTGTGGTCATTCCTCAAGTT+GGG - chr5_2:48130868-48130887 None:intergenic 40.0%
TTTGTGGTCATTCCTCAAGT+TGG - chr5_2:48130869-48130888 None:intergenic 40.0%
CACATGTTCCTATGGCTAAG+AGG - chr5_2:48128712-48128731 None:intergenic 45.0%
CTCTTAGCCATAGGAACATG+TGG + chr5_2:48128710-48128729 Msa0773290:CDS 45.0%
TTAGCCATAGGAACATGTGG+TGG + chr5_2:48128713-48128732 Msa0773290:CDS 45.0%
TTGGGAAGGCAGATGTTTCA+AGG - chr5_2:48128799-48128818 None:intergenic 45.0%
ACGGTTGTGGATGTGAGAAA+TGG - chr5_2:48128840-48128859 None:intergenic 45.0%
!! TTTGGTAGCGGTAACGGTAA+CGG - chr5_2:48128859-48128878 None:intergenic 45.0%
!!! TAGGGTTTTGGTAGCGGTAA+CGG - chr5_2:48128865-48128884 None:intergenic 45.0%
TACCGCTACCAAAACCCTAA+CGG + chr5_2:48128866-48128885 Msa0773290:CDS 45.0%
! TGTTGTTGCCGTTAGGGTTT+TGG - chr5_2:48128877-48128896 None:intergenic 45.0%
ACTGCCGAAGCGATAAACAA+AGG - chr5_2:48128929-48128948 None:intergenic 45.0%
TTTATCGCTTCGGCAGTCAT+CGG + chr5_2:48128932-48128951 Msa0773290:CDS 45.0%
GTAGAGGTAGTCGTCTAAAC+CGG - chr5_2:48128966-48128985 None:intergenic 45.0%
TGCCAAAACAACACTCCCAA+GGG - chr5_2:48129128-48129147 None:intergenic 45.0%
! TTGGCACTGAATTCTGATGG+TGG + chr5_2:48129142-48129161 Msa0773290:CDS 45.0%
!! GATGGTGGAGATAGACTTGT+TGG + chr5_2:48129157-48129176 Msa0773290:CDS 45.0%
!! TTGGCTTCTGCTGCTTTGTA+TGG + chr5_2:48129220-48129239 Msa0773290:CDS 45.0%
!!! TCTCTCTTTTTTCCGGGCTA+GGG - chr5_2:48130342-48130361 None:intergenic 45.0%
!!! TTCTCTCTTTTTTCCGGGCT+AGG - chr5_2:48130343-48130362 None:intergenic 45.0%
!! TCGACTCCGCGTTTTGTTAA+GGG - chr5_2:48130370-48130389 None:intergenic 45.0%
!! TTCGACTCCGCGTTTTGTTA+AGG - chr5_2:48130371-48130390 None:intergenic 45.0%
GATTTCGCAGGTGATTCCAA+GGG + chr5_2:48130437-48130456 Msa0773290:intron 45.0%
TTGAAATCCCTTGCTTCCCT+TGG - chr5_2:48130456-48130475 None:intergenic 45.0%
GAAGCAAGGGATTTCAAGCT+TGG + chr5_2:48130459-48130478 Msa0773290:CDS 45.0%
AGCAAGGGATTTCAAGCTTG+GGG + chr5_2:48130461-48130480 Msa0773290:CDS 45.0%
TGTGCCTCTTCATTGCTATC+TGG + chr5_2:48130564-48130583 Msa0773290:CDS 45.0%
!! TTGCTTTGGTGCTCTCACTT+TGG + chr5_2:48130670-48130689 Msa0773290:CDS 45.0%
!! TGCTTTGGTGCTCTCACTTT+GGG + chr5_2:48130671-48130690 Msa0773290:CDS 45.0%
!! CTAGCTTTGTACCCAACTTG+AGG + chr5_2:48130854-48130873 Msa0773290:three_prime_UTR 45.0%
!! ATGTTTAATTAATATTTAAT+TGG - chr5_2:48130247-48130266 None:intergenic 5.0%
TGGTCCACCACATGTTCCTA+TGG - chr5_2:48128720-48128739 None:intergenic 50.0%
!! TGCCGTTAGGGTTTTGGTAG+CGG - chr5_2:48128871-48128890 None:intergenic 50.0%
GCCGAAGCGATAAACAAAGG+TGG - chr5_2:48128926-48128945 None:intergenic 50.0%
! CTCACACTTAGCTTTCACCG+CGG + chr5_2:48129036-48129055 Msa0773290:CDS 50.0%
!!! GACCCTTGGGAGTGTTGTTT+TGG + chr5_2:48129123-48129142 Msa0773290:CDS 50.0%
GTGCCAAAACAACACTCCCA+AGG - chr5_2:48129129-48129148 None:intergenic 50.0%
!! CGACTCCGCGTTTTGTTAAG+GGG - chr5_2:48130369-48130388 None:intergenic 50.0%
CGATTTCGCAGGTGATTCCA+AGG + chr5_2:48130436-48130455 Msa0773290:intron 50.0%
AGGTGATTCCAAGGGAAGCA+AGG + chr5_2:48130445-48130464 Msa0773290:intron 50.0%
GGTGATTCCAAGGGAAGCAA+GGG + chr5_2:48130446-48130465 Msa0773290:intron 50.0%
AGCAGAGAAAGGGGTTGCTT+TGG + chr5_2:48130656-48130675 Msa0773290:CDS 50.0%
!! GCTTTGGTGCTCTCACTTTG+GGG + chr5_2:48130672-48130691 Msa0773290:CDS 50.0%
TCCATGGCGGCAAACGTGTA+TGG + chr5_2:48128762-48128781 Msa0773290:CDS 55.0%
! AGCGGTAACGGTAACGGTTG+TGG - chr5_2:48128853-48128872 None:intergenic 55.0%
GCAGTCATCGGAGTTCTCAC+CGG + chr5_2:48128944-48128963 Msa0773290:CDS 55.0%
! CTGCGGCATAAAGCGTCTAC+CGG + chr5_2:48128988-48129007 Msa0773290:CDS 55.0%
CGCGGTGAAAGCTAAGTGTG+AGG - chr5_2:48129038-48129057 None:intergenic 55.0%
ATAACAAGAGGGCCCTAGCC+CGG + chr5_2:48130327-48130346 Msa0773290:intron 55.0%
GCCATACACGTTTGCCGCCA+TGG - chr5_2:48128766-48128785 None:intergenic 60.0%
GACGACTACCTCTACGCCTG+CGG + chr5_2:48128971-48128990 Msa0773290:CDS 60.0%
GCTTTATGCCGCAGGCGTAG+AGG - chr5_2:48128982-48129001 None:intergenic 60.0%
CGGTAGACGCTTTATGCCGC+AGG - chr5_2:48128990-48129009 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 48128515 48130979 48128515 ID=Msa0773290;Name=Msa0773290
chr5_2 mRNA 48128515 48130979 48128515 ID=Msa0773290-mRNA-1;Parent=Msa0773290;Name=Msa0773290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=114|1|1|1|1|1|2|191|366
chr5_2 exon 48128515 48129387 48128515 ID=Msa0773290-mRNA-1:exon:14397;Parent=Msa0773290-mRNA-1
chr5_2 exon 48130447 48130979 48130447 ID=Msa0773290-mRNA-1:exon:14398;Parent=Msa0773290-mRNA-1
chr5_2 five_prime_UTR 48128515 48128628 48128515 ID=Msa0773290-mRNA-1:five_prime_utr;Parent=Msa0773290-mRNA-1
chr5_2 CDS 48128629 48129387 48128629 ID=Msa0773290-mRNA-1:cds;Parent=Msa0773290-mRNA-1
chr5_2 CDS 48130447 48130788 48130447 ID=Msa0773290-mRNA-1:cds;Parent=Msa0773290-mRNA-1
chr5_2 three_prime_UTR 48130789 48130979 48130789 ID=Msa0773290-mRNA-1:three_prime_utr;Parent=Msa0773290-mRNA-1
Gene Sequence

>Msa0773290

ATGGTGGAAAGAATAATTAGCAAAGAAGAAGAAAGCAAAAAAAGAAGCATGAAGAAACTCCTTCTAATACTAAACTCAATCCTCTTAGCCATAGGAACATGTGGTGGACCACTAGTAATGCGTTTATACTTCATCCATGGCGGCAAACGTGTATGGCTCTCAAGCTTCCTTGAAACATCTGCCTTCCCAATAATTCTCATTCCCTTAACCATTTCTCACATCCACAACCGTTACCGTTACCGCTACCAAAACCCTAACGGCAACAACAATAATAACAACTTTGTCTCAATGAAACCACCTTTGTTTATCGCTTCGGCAGTCATCGGAGTTCTCACCGGTTTAGACGACTACCTCTACGCCTGCGGCATAAAGCGTCTACCGGTGTCAACTTCTTCGTTAATTCAATCCTCACACTTAGCTTTCACCGCGGTTTTCGCGTTTTTTCTTGTGAAGCATAAGTTCACAGCTTATTCTGTTAACTCTATTGTTTTGTTGACCCTTGGGAGTGTTGTTTTGGCACTGAATTCTGATGGTGGAGATAGACTTGTTGGTGAGTCTACTAAGGATTATGTGATTGGTTTTGTTATGATATTGGCTTCTGCTGCTTTGTATGGATTTGTTTTACCGTTGTTGGAGTTGGTTTATAAAAAGAGTAAACAAGCTATTACTTATTCTCTTGTTATGGAGATTCAGCTTGTTATGTGCTTCTTTGCTACTTTGTTTTGCGTTGTTGGGATGATCATAGACAATGATTTTAAGGTGATTCCAAGGGAAGCAAGGGATTTCAAGCTTGGGGAAACAAAGTACTATGTTGTGCTAGTGTGGAGTGCTATAATGTGGCAATTTTTCTTCTTAGGAGCGATTGGAGTTATCTTTTGTGCCTCTTCATTGCTATCTGGTATTATAATTGCTGCATTTCTTCCCATAACTGAAATCTTAGCTGTTATTGTTTACAAAGAGAAATTTCAAGCAGAGAAAGGGGTTGCTTTGGTGCTCTCACTTTGGGGCTTTGTGTCTTACTTTTATGATGAGATTAAAGAAGCAAAAAAAATGAAAAATAGAGAAATGGAACTGCCTCAAAGTCTTCATTCAATCACATGA

Protein sequence

>Msa0773290

MVERIISKEEESKKRSMKKLLLILNSILLAIGTCGGPLVMRLYFIHGGKRVWLSSFLETSAFPIILIPLTISHIHNRYRYRYQNPNGNNNNNNFVSMKPPLFIASAVIGVLTGLDDYLYACGIKRLPVSTSSLIQSSHLAFTAVFAFFLVKHKFTAYSVNSIVLLTLGSVVLALNSDGGDRLVGESTKDYVIGFVMILASAALYGFVLPLLELVYKKSKQAITYSLVMEIQLVMCFFATLFCVVGMIIDNDFKVIPREARDFKLGETKYYVVLVWSAIMWQFFFLGAIGVIFCASSLLSGIIIAAFLPITEILAVIVYKEKFQAEKGVALVLSLWGFVSYFYDEIKEAKKMKNREMELPQSLHSIT*