AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1415270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415270 MtrunA17_Chr5g0426921 98.634 366 3 1 1 366 1 364 0.0 729
Msa1415270 MtrunA17_Chr3g0132551 63.760 367 123 4 7 365 4 368 2.00e-169 477
Msa1415270 MtrunA17_Chr3g0132561 54.795 365 121 5 9 365 5 333 1.47e-136 392
Msa1415270 MtrunA17_Chr4g0055041 35.312 337 209 3 27 360 42 372 5.22e-65 211
Msa1415270 MtrunA17_Chr2g0296491 35.345 348 198 7 12 358 65 386 2.79e-63 207
Msa1415270 MtrunA17_Chr2g0283381 33.134 335 216 2 22 356 44 370 7.49e-59 195
Msa1415270 MtrunA17_Chr3g0102091 32.520 369 234 5 3 366 30 388 1.11e-56 189
Msa1415270 MtrunA17_Chr7g0249781 34.111 343 213 4 14 355 23 353 8.59e-56 186
Msa1415270 MtrunA17_Chr8g0346091 32.344 337 201 3 20 350 53 368 2.49e-52 177
Msa1415270 MtrunA17_Chr2g0296481 34.579 321 189 7 41 355 72 377 2.58e-52 178
Msa1415270 MtrunA17_Chr6g0483671 32.653 147 99 0 198 344 5 151 6.13e-23 94.4
Msa1415270 MtrunA17_Chr2g0313931 36.719 128 68 2 22 148 34 149 1.56e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415270 AT2G33750.2 58.721 344 135 2 17 360 3 339 2.10e-141 405
Msa1415270 AT1G28220.1 55.490 337 143 2 17 353 1 330 8.15e-138 396
Msa1415270 AT2G33750.1 56.901 355 135 3 17 360 3 350 1.06e-137 396
Msa1415270 AT1G28230.1 58.621 348 138 3 17 359 1 347 4.98e-136 392
Msa1415270 AT4G18220.1 35.404 322 194 5 41 361 66 374 1.01e-56 190
Msa1415270 AT4G18210.1 32.964 361 221 5 7 361 31 376 5.28e-53 180
Msa1415270 AT4G18205.1 34.891 321 192 4 41 357 61 368 1.98e-51 176
Msa1415270 AT4G18197.1 32.722 327 203 4 41 363 64 377 4.42e-46 162
Msa1415270 AT1G30840.2 33.628 339 207 6 8 342 12 336 8.16e-45 158
Msa1415270 AT1G30840.1 33.628 339 207 6 8 342 12 336 8.16e-45 158
Msa1415270 AT1G44750.6 32.231 363 224 6 3 355 6 356 1.82e-44 157
Msa1415270 AT1G44750.2 32.231 363 224 6 3 355 6 356 1.82e-44 157
Msa1415270 AT1G44750.1 32.231 363 224 6 3 355 18 368 2.68e-44 157
Msa1415270 AT4G18195.1 32.492 317 201 3 41 355 67 372 3.93e-44 157
Msa1415270 AT1G44750.7 35.600 250 159 2 107 355 44 292 2.87e-43 152
Msa1415270 AT1G44750.5 35.600 250 159 2 107 355 44 292 2.87e-43 152
Msa1415270 AT1G44750.4 35.600 250 159 2 107 355 44 292 2.87e-43 152
Msa1415270 AT1G44750.8 35.600 250 159 2 107 355 44 292 2.87e-43 152
Msa1415270 AT1G44750.3 35.600 250 159 2 107 355 44 292 2.87e-43 152
Msa1415270 AT4G18190.1 32.329 365 228 6 3 361 20 371 1.88e-42 152
Msa1415270 AT2G24220.1 33.535 331 205 3 7 337 25 340 2.84e-41 149
Msa1415270 AT2G24220.2 33.535 331 205 3 7 337 43 358 3.23e-41 149
Msa1415270 AT4G08700.1 27.246 345 235 4 14 357 30 359 7.08e-37 137
Msa1415270 AT5G41160.1 26.776 366 243 7 5 357 9 362 3.26e-35 132
Msa1415270 AT1G19770.1 27.419 310 207 5 51 349 88 390 9.54e-25 104
Msa1415270 AT1G57943.2 28.399 331 204 9 49 365 84 395 9.83e-24 101
Msa1415270 AT1G57943.1 28.399 331 204 9 49 365 85 396 1.00e-23 101
Msa1415270 AT1G57980.1 27.576 330 207 8 49 365 82 392 7.77e-21 93.2
Msa1415270 AT1G57990.1 25.688 327 217 8 49 365 78 388 8.52e-20 90.1
Msa1415270 AT1G47603.1 26.879 346 215 10 26 350 53 381 3.97e-18 85.5
Msa1415270 AT1G09860.1 27.492 331 201 13 49 357 69 382 9.91e-15 75.1
Msa1415270 AT1G75470.1 20.902 244 179 4 124 355 144 385 1.11e-12 68.9

Find 82 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTGGTGCTCTCACTTT+GGG 0.109096 tig0024199:+13194 Msa1415270:CDS
GTTAAGGGAATGAGAATTAT+TGG 0.202075 tig0024199:-11338 None:intergenic
TGTGCCTCTTCATTGCTATC+TGG 0.276545 tig0024199:+13087 Msa1415270:CDS
AATTAAAACAAAATGAAAAT+AGG 0.291059 tig0024199:-13461 None:intergenic
TGTTGTTGCCGTTAGGGTTT+TGG 0.296547 tig0024199:-11397 None:intergenic
GACCCTTGGGAGTGTTGTTT+TGG 0.297124 tig0024199:+11646 Msa1415270:CDS
AACAGCTAAGATTTCAGTTA+TGG 0.309424 tig0024199:-13133 None:intergenic
TTGGCTTCTGCTGCTTTGTA+TGG 0.317318 tig0024199:+11743 Msa1415270:CDS
TTGCTTTGGTGCTCTCACTT+TGG 0.319968 tig0024199:+13193 Msa1415270:CDS
GGATTGAGTTTAGTATTAGA+AGG 0.332698 tig0024199:-11211 None:intergenic
TCTTAACATGTAAAGAAGTA+TGG 0.337721 tig0024199:-11069 None:intergenic
TATTACTTATTCTCTTGTTA+TGG 0.358957 tig0024199:+11814 Msa1415270:CDS
TCTACTAAGGATTATGTGAT+TGG 0.363277 tig0024199:+11707 Msa1415270:CDS
AGCAGAGAAAGGGGTTGCTT+TGG 0.380450 tig0024199:+13179 Msa1415270:CDS
TTATTATTGTTGTTGCCGTT+AGG 0.386452 tig0024199:-11404 None:intergenic
TTGTGGTCATTCCTCAAGTT+GGG 0.393893 tig0024199:-13388 None:intergenic
ACAGCTAAGATTTCAGTTAT+GGG 0.401537 tig0024199:-13132 None:intergenic
TTAAGGGAATGAGAATTATT+GGG 0.403587 tig0024199:-11337 None:intergenic
AGAAATTTCAAGCAGAGAAA+GGG 0.404504 tig0024199:+13169 Msa1415270:CDS
TATTATTGTTGTTGCCGTTA+GGG 0.409224 tig0024199:-11403 None:intergenic
ACCACCTTTGTTTATCGCTT+CGG 0.421218 tig0024199:+11445 Msa1415270:CDS
GAGAAATTTCAAGCAGAGAA+AGG 0.424086 tig0024199:+13168 Msa1415270:CDS
TTTGTGGTCATTCCTCAAGT+TGG 0.431393 tig0024199:-13389 None:intergenic
TTGAAATCCCTTGCTTCCCT+TGG 0.436924 tig0024199:-12976 None:intergenic
AGCGGTAACGGTAACGGTTG+TGG 0.438617 tig0024199:-11373 None:intergenic
GAAGCAAGGGATTTCAAGCT+TGG 0.447995 tig0024199:+12982 Msa1415270:CDS
ATTATTCTTTCCACCATGGC+TGG 0.459579 tig0024199:-11146 None:intergenic
GCCATACACGTTTGCCGCCA+TGG 0.460981 tig0024199:-11286 None:intergenic
AAGCAAGGGATTTCAAGCTT+GGG 0.461079 tig0024199:+12983 Msa1415270:CDS
TCCATGGCGGCAAACGTGTA+TGG 0.467259 tig0024199:+11285 Msa1415270:CDS
AAAATAGGATAAAATTTGAC+GGG 0.470242 tig0024199:-13446 None:intergenic
ACTTGTTGGTGAGTCTACTA+AGG 0.477683 tig0024199:+11694 Msa1415270:CDS
GTGATTGAATGAAGACTTTG+AGG 0.480812 tig0024199:-13285 None:intergenic
TTGGGAAGGCAGATGTTTCA+AGG 0.487413 tig0024199:-11319 None:intergenic
CGATTTCGCAGGTGATTCCA+AGG 0.488583 tig0024199:+12959 Msa1415270:intron
TGGTCCACCACATGTTCCTA+TGG 0.488999 tig0024199:-11240 None:intergenic
TTTGGTAGCGGTAACGGTAA+CGG 0.493276 tig0024199:-11379 None:intergenic
GTGGATGTGAGAAATGGTTA+AGG 0.494562 tig0024199:-11354 None:intergenic
GCTAATTATTCTTTCCACCA+TGG 0.494814 tig0024199:-11150 None:intergenic
GATGGTGGAGATAGACTTGT+TGG 0.502081 tig0024199:+11680 Msa1415270:CDS
TTTATCGCTTCGGCAGTCAT+CGG 0.508139 tig0024199:+11455 Msa1415270:CDS
CACATGTTCCTATGGCTAAG+AGG 0.511689 tig0024199:-11232 None:intergenic
AGCAAATAATTAACCAGCCA+TGG 0.520477 tig0024199:+11133 Msa1415270:exon
GTAGAGGTAGTCGTCTAAAC+CGG 0.524198 tig0024199:-11486 None:intergenic
GAAAATAGGATAAAATTTGA+CGG 0.529918 tig0024199:-13447 None:intergenic
TTATAAACCAACTCCAACAA+CGG 0.529943 tig0024199:-11776 None:intergenic
ACGGTTGTGGATGTGAGAAA+TGG 0.530168 tig0024199:-11360 None:intergenic
GAAATTTCAAGCAGAGAAAG+GGG 0.546511 tig0024199:+13170 Msa1415270:CDS
GCTTTGGTGCTCTCACTTTG+GGG 0.547915 tig0024199:+13195 Msa1415270:CDS
TGGATGTGAGAAATGGTTAA+GGG 0.553222 tig0024199:-11353 None:intergenic
AGGTGATTCCAAGGGAAGCA+AGG 0.563127 tig0024199:+12968 Msa1415270:intron
TTAATTATTTGCTAGAGTAG+AGG 0.564550 tig0024199:-11123 None:intergenic
CGGTAGACGCTTTATGCCGC+AGG 0.567407 tig0024199:-11510 None:intergenic
CTGCGGCATAAAGCGTCTAC+CGG 0.571271 tig0024199:+11511 Msa1415270:CDS
GCAGTCATCGGAGTTCTCAC+CGG 0.580044 tig0024199:+11467 Msa1415270:CDS
ATGCGTTTATACTTCATCCA+TGG 0.581468 tig0024199:+11269 Msa1415270:CDS
AGCAAGGGATTTCAAGCTTG+GGG 0.584822 tig0024199:+12984 Msa1415270:CDS
AGTACTATGTTGTGCTAGTG+TGG 0.588131 tig0024199:+13013 Msa1415270:CDS
CTCTTAGCCATAGGAACATG+TGG 0.591598 tig0024199:+11233 Msa1415270:CDS
CTAGCTTTGTACCCAACTTG+AGG 0.592540 tig0024199:+13377 Msa1415270:three_prime_UTR
AACTCAATCCTCTTAGCCAT+AGG 0.604730 tig0024199:+11224 Msa1415270:CDS
AATACCAGATAGCAATGAAG+AGG 0.606353 tig0024199:-13091 None:intergenic
GTGCCAAAACAACACTCCCA+AGG 0.608152 tig0024199:-11649 None:intergenic
TGCCAAAACAACACTCCCAA+GGG 0.608894 tig0024199:-11648 None:intergenic
GGGAATGAGAATTATTGGGA+AGG 0.610936 tig0024199:-11333 None:intergenic
GGTGATTCCAAGGGAAGCAA+GGG 0.617537 tig0024199:+12969 Msa1415270:intron
CGCGGTGAAAGCTAAGTGTG+AGG 0.632940 tig0024199:-11558 None:intergenic
AAGTATAAACGCATTACTAG+TGG 0.641109 tig0024199:-11260 None:intergenic
TACCGCTACCAAAACCCTAA+CGG 0.646649 tig0024199:+11389 Msa1415270:CDS
GCTTTATGCCGCAGGCGTAG+AGG 0.652914 tig0024199:-11502 None:intergenic
TTGGCACTGAATTCTGATGG+TGG 0.661099 tig0024199:+11665 Msa1415270:CDS
GATTTCGCAGGTGATTCCAA+GGG 0.661936 tig0024199:+12960 Msa1415270:intron
GACGACTACCTCTACGCCTG+CGG 0.669034 tig0024199:+11494 Msa1415270:CDS
CGTTTATACTTCATCCATGG+CGG 0.677695 tig0024199:+11272 Msa1415270:CDS
TTAGCCATAGGAACATGTGG+TGG 0.677866 tig0024199:+11236 Msa1415270:CDS
AAATAATTAACCAGCCATGG+TGG 0.679882 tig0024199:+11136 Msa1415270:exon
ACTGCCGAAGCGATAAACAA+AGG 0.695167 tig0024199:-11449 None:intergenic
ATTAACGAAGAAGTTGACAC+CGG 0.698512 tig0024199:-11530 None:intergenic
GCCGAAGCGATAAACAAAGG+TGG 0.698965 tig0024199:-11446 None:intergenic
AAATAGGATAAAATTTGACG+GGG 0.721060 tig0024199:-13445 None:intergenic
TAGTGTGGAGTGCTATAATG+TGG 0.749239 tig0024199:+13028 Msa1415270:CDS
CTCACACTTAGCTTTCACCG+CGG 0.755684 tig0024199:+11559 Msa1415270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTAATTCTATTTTATTT+TGG - tig0024199:12377-12396 None:intergenic 10.0%
!! AATAAAATAGAATTAGAATA+AGG + tig0024199:12378-12397 Msa1415270:intron 10.0%
!! ATTAATAATTCAATATCAAT+GGG - tig0024199:12465-12484 None:intergenic 10.0%
!!! TTTCTTTTAATTCTTTATTT+AGG + tig0024199:12614-12633 Msa1415270:intron 10.0%
!! AATTAAAACAAAATGAAAAT+AGG - tig0024199:13464-13483 None:intergenic 10.0%
!!! TTTTCATTTTGTTTTAATTT+TGG + tig0024199:13465-13484 Msa1415270:three_prime_UTR 10.0%
!!! TTTCATTTTGTTTTAATTTT+GGG + tig0024199:13466-13485 Msa1415270:three_prime_UTR 10.0%
!! TTAGATTTATTTATTGTATG+TGG - tig0024199:12173-12192 None:intergenic 15.0%
!! CATTAATAATTCAATATCAA+TGG - tig0024199:12466-12485 None:intergenic 15.0%
!!! TAAATTTCTTTTGATTCTAT+TGG + tig0024199:12640-12659 Msa1415270:intron 15.0%
!!! ATCTAAAACATTTTTTCTAT+TGG + tig0024199:12735-12754 Msa1415270:intron 15.0%
!!! TTTTTTTTTTAGATAACAAG+AGG + tig0024199:12838-12857 Msa1415270:intron 15.0%
!!! TTTTTTTTTAGATAACAAGA+GGG + tig0024199:12839-12858 Msa1415270:intron 15.0%
!! GTAATAAATAATTTCTCTAT+TGG - tig0024199:12920-12939 None:intergenic 15.0%
!! AAAAATGAAAAATAGAGAAA+TGG + tig0024199:13257-13276 Msa1415270:CDS 15.0%
!! TATTACTTATTCTCTTGTTA+TGG + tig0024199:11814-11833 Msa1415270:CDS 20.0%
!!! TTTTTGTTTATAACAGTGAT+TGG - tig0024199:12099-12118 None:intergenic 20.0%
!! ATAGTAGAATTAGAATATTG+TGG + tig0024199:12349-12368 Msa1415270:intron 20.0%
!! AATAAAAAGAGAGCAATATT+CGG - tig0024199:12422-12441 None:intergenic 20.0%
!!! TTTTTATTTCTCAAAACTTG+TGG + tig0024199:12434-12453 Msa1415270:intron 20.0%
!! CTAAGAATAGTTATTACATT+TGG + tig0024199:12521-12540 Msa1415270:intron 20.0%
!! AAACTTAAAACCTAAATTGT+GGG - tig0024199:12597-12616 None:intergenic 20.0%
!!! ACCAATTCTATTTTTCTATT+TGG + tig0024199:12671-12690 Msa1415270:intron 20.0%
!! ACCAAATAGAAAAATAGAAT+TGG - tig0024199:12675-12694 None:intergenic 20.0%
!!! GTAATGATGTTATTTTTGTT+TGG + tig0024199:13318-13337 Msa1415270:three_prime_UTR 20.0%
!!! TTTTGAATTGTCAATATTGT+AGG + tig0024199:13354-13373 Msa1415270:three_prime_UTR 20.0%
!! AAAATAGGATAAAATTTGAC+GGG - tig0024199:13449-13468 None:intergenic 20.0%
!! GAAAATAGGATAAAATTTGA+CGG - tig0024199:13450-13469 None:intergenic 20.0%
! TCTTAACATGTAAAGAAGTA+TGG - tig0024199:11072-11091 None:intergenic 25.0%
!! TTAATTATTTGCTAGAGTAG+AGG - tig0024199:11126-11145 None:intergenic 25.0%
! TTAAGGGAATGAGAATTATT+GGG - tig0024199:11340-11359 None:intergenic 25.0%
!!! GATTGGTTTTGTTATGATAT+TGG + tig0024199:11724-11743 Msa1415270:CDS 25.0%
!! GATCATAGACAATGATTTTA+AGG + tig0024199:11889-11908 Msa1415270:CDS 25.0%
! ATAAAAAGAGAGCAATATTC+GGG - tig0024199:12421-12440 None:intergenic 25.0%
! ATTCCAATTCAATTTACGTA+AGG + tig0024199:12555-12574 Msa1415270:intron 25.0%
! AATCCTTACGTAAATTGAAT+TGG - tig0024199:12561-12580 None:intergenic 25.0%
! GAAACTTAAAACCTAAATTG+TGG - tig0024199:12598-12617 None:intergenic 25.0%
!! CAAAATGTCTTAATCTTTTG+TGG - tig0024199:13408-13427 None:intergenic 25.0%
! AAATAGGATAAAATTTGACG+GGG - tig0024199:13448-13467 None:intergenic 25.0%
GGATTGAGTTTAGTATTAGA+AGG - tig0024199:11214-11233 None:intergenic 30.0%
AAGTATAAACGCATTACTAG+TGG - tig0024199:11263-11282 None:intergenic 30.0%
GTTAAGGGAATGAGAATTAT+TGG - tig0024199:11341-11360 None:intergenic 30.0%
! TATTATTGTTGTTGCCGTTA+GGG - tig0024199:11406-11425 None:intergenic 30.0%
! TTATTATTGTTGTTGCCGTT+AGG - tig0024199:11407-11426 None:intergenic 30.0%
TCTACTAAGGATTATGTGAT+TGG + tig0024199:11707-11726 Msa1415270:CDS 30.0%
TTATAAACCAACTCCAACAA+CGG - tig0024199:11779-11798 None:intergenic 30.0%
AATTGTGAGTGTACAAAGTA+TGG - tig0024199:11957-11976 None:intergenic 30.0%
AATTGTGAGTGTACAAAGTA+TGG - tig0024199:11957-11976 None:intergenic 30.0%
TGTTTATAACAGTGATTGGA+GGG - tig0024199:12095-12114 None:intergenic 30.0%
TTGTTTATAACAGTGATTGG+AGG - tig0024199:12096-12115 None:intergenic 30.0%
! CATTCTAAAGACACACTTAA+TGG - tig0024199:12276-12295 None:intergenic 30.0%
TAAAAAGAGAGCAATATTCG+GGG - tig0024199:12420-12439 None:intergenic 30.0%
CTATTCTTAGATTCAATACG+TGG - tig0024199:12511-12530 None:intergenic 30.0%
! ATGTGGCAATTTTTCTTCTT+AGG + tig0024199:13045-13064 Msa1415270:CDS 30.0%
ACAGCTAAGATTTCAGTTAT+GGG - tig0024199:13135-13154 None:intergenic 30.0%
AACAGCTAAGATTTCAGTTA+TGG - tig0024199:13136-13155 None:intergenic 30.0%
AGAAATTTCAAGCAGAGAAA+GGG + tig0024199:13169-13188 Msa1415270:CDS 30.0%
AGCAAATAATTAACCAGCCA+TGG + tig0024199:11133-11152 Msa1415270:exon 35.0%
AAATAATTAACCAGCCATGG+TGG + tig0024199:11136-11155 Msa1415270:exon 35.0%
GCTAATTATTCTTTCCACCA+TGG - tig0024199:11153-11172 None:intergenic 35.0%
ATGCGTTTATACTTCATCCA+TGG + tig0024199:11269-11288 Msa1415270:CDS 35.0%
TGGATGTGAGAAATGGTTAA+GGG - tig0024199:11356-11375 None:intergenic 35.0%
ATTAACGAAGAAGTTGACAC+CGG - tig0024199:11533-11552 None:intergenic 35.0%
!! TCTATTGTTTTGTTGACCCT+TGG + tig0024199:11632-11651 Msa1415270:CDS 35.0%
!! CTATTGTTTTGTTGACCCTT+GGG + tig0024199:11633-11652 Msa1415270:CDS 35.0%
!!! TGGATTTGTTTTACCGTTGT+TGG + tig0024199:11763-11782 Msa1415270:CDS 35.0%
!!! CTACTTTGTTTTGCGTTGTT+GGG + tig0024199:11864-11883 Msa1415270:CDS 35.0%
TGAGACACAGTACATTTGTT+TGG - tig0024199:12246-12265 None:intergenic 35.0%
AAAAAGAGAGCAATATTCGG+GGG - tig0024199:12419-12438 None:intergenic 35.0%
CTAAATTGTGGGACTAAGAT+TGG - tig0024199:12586-12605 None:intergenic 35.0%
CAATCTTAGTCCCACAATTT+AGG + tig0024199:12584-12603 Msa1415270:intron 35.0%
! TTTTTCTTCTTAGGAGCGAT+TGG + tig0024199:13054-13073 Msa1415270:CDS 35.0%
AATACCAGATAGCAATGAAG+AGG - tig0024199:13094-13113 None:intergenic 35.0%
GAGAAATTTCAAGCAGAGAA+AGG + tig0024199:13168-13187 Msa1415270:CDS 35.0%
GAAATTTCAAGCAGAGAAAG+GGG + tig0024199:13170-13189 Msa1415270:CDS 35.0%
GTGATTGAATGAAGACTTTG+AGG - tig0024199:13288-13307 None:intergenic 35.0%
ATTATTCTTTCCACCATGGC+TGG - tig0024199:11149-11168 None:intergenic 40.0%
AACTCAATCCTCTTAGCCAT+AGG + tig0024199:11224-11243 Msa1415270:CDS 40.0%
CGTTTATACTTCATCCATGG+CGG + tig0024199:11272-11291 Msa1415270:CDS 40.0%
GGGAATGAGAATTATTGGGA+AGG - tig0024199:11336-11355 None:intergenic 40.0%
GTGGATGTGAGAAATGGTTA+AGG - tig0024199:11357-11376 None:intergenic 40.0%
! ACCACCTTTGTTTATCGCTT+CGG + tig0024199:11445-11464 Msa1415270:CDS 40.0%
AAGAAAAAACGCGAAAACCG+CGG - tig0024199:11579-11598 None:intergenic 40.0%
!! GTTTTGGCACTGAATTCTGA+TGG + tig0024199:11662-11681 Msa1415270:CDS 40.0%
! ACTTGTTGGTGAGTCTACTA+AGG + tig0024199:11694-11713 Msa1415270:CDS 40.0%
! TGTTTTACCGTTGTTGGAGT+TGG + tig0024199:11769-11788 Msa1415270:CDS 40.0%
!!! GCTACTTTGTTTTGCGTTGT+TGG + tig0024199:11863-11882 Msa1415270:CDS 40.0%
AAAAGAGAGCAATATTCGGG+GGG - tig0024199:12418-12437 None:intergenic 40.0%
!!! GGTAGTTCTCTCTTTTTTCC+GGG - tig0024199:12871-12890 None:intergenic 40.0%
!!! GGGTAGTTCTCTCTTTTTTC+CGG - tig0024199:12872-12891 None:intergenic 40.0%
AACTACCCCTTAACAAAACG+CGG + tig0024199:12884-12903 Msa1415270:intron 40.0%
! AATGAGTATTGCGATTTCGC+AGG + tig0024199:12948-12967 Msa1415270:intron 40.0%
AAGCAAGGGATTTCAAGCTT+GGG + tig0024199:12983-13002 Msa1415270:CDS 40.0%
AGTACTATGTTGTGCTAGTG+TGG + tig0024199:13013-13032 Msa1415270:CDS 40.0%
! TAGTGTGGAGTGCTATAATG+TGG + tig0024199:13028-13047 Msa1415270:CDS 40.0%
TTGTGGTCATTCCTCAAGTT+GGG - tig0024199:13391-13410 None:intergenic 40.0%
TTTGTGGTCATTCCTCAAGT+TGG - tig0024199:13392-13411 None:intergenic 40.0%
CACATGTTCCTATGGCTAAG+AGG - tig0024199:11235-11254 None:intergenic 45.0%
CTCTTAGCCATAGGAACATG+TGG + tig0024199:11233-11252 Msa1415270:CDS 45.0%
TTAGCCATAGGAACATGTGG+TGG + tig0024199:11236-11255 Msa1415270:CDS 45.0%
TTGGGAAGGCAGATGTTTCA+AGG - tig0024199:11322-11341 None:intergenic 45.0%
ACGGTTGTGGATGTGAGAAA+TGG - tig0024199:11363-11382 None:intergenic 45.0%
!! TTTGGTAGCGGTAACGGTAA+CGG - tig0024199:11382-11401 None:intergenic 45.0%
!!! TAGGGTTTTGGTAGCGGTAA+CGG - tig0024199:11388-11407 None:intergenic 45.0%
TACCGCTACCAAAACCCTAA+CGG + tig0024199:11389-11408 Msa1415270:CDS 45.0%
! TGTTGTTGCCGTTAGGGTTT+TGG - tig0024199:11400-11419 None:intergenic 45.0%
ACTGCCGAAGCGATAAACAA+AGG - tig0024199:11452-11471 None:intergenic 45.0%
TTTATCGCTTCGGCAGTCAT+CGG + tig0024199:11455-11474 Msa1415270:CDS 45.0%
GTAGAGGTAGTCGTCTAAAC+CGG - tig0024199:11489-11508 None:intergenic 45.0%
TGCCAAAACAACACTCCCAA+GGG - tig0024199:11651-11670 None:intergenic 45.0%
! TTGGCACTGAATTCTGATGG+TGG + tig0024199:11665-11684 Msa1415270:CDS 45.0%
!! GATGGTGGAGATAGACTTGT+TGG + tig0024199:11680-11699 Msa1415270:CDS 45.0%
!! TTGGCTTCTGCTGCTTTGTA+TGG + tig0024199:11743-11762 Msa1415270:CDS 45.0%
!!! TCTCTCTTTTTTCCGGGCTA+GGG - tig0024199:12865-12884 None:intergenic 45.0%
!!! TTCTCTCTTTTTTCCGGGCT+AGG - tig0024199:12866-12885 None:intergenic 45.0%
!! TCGACTCCGCGTTTTGTTAA+GGG - tig0024199:12893-12912 None:intergenic 45.0%
!! TTCGACTCCGCGTTTTGTTA+AGG - tig0024199:12894-12913 None:intergenic 45.0%
GATTTCGCAGGTGATTCCAA+GGG + tig0024199:12960-12979 Msa1415270:intron 45.0%
TTGAAATCCCTTGCTTCCCT+TGG - tig0024199:12979-12998 None:intergenic 45.0%
GAAGCAAGGGATTTCAAGCT+TGG + tig0024199:12982-13001 Msa1415270:CDS 45.0%
AGCAAGGGATTTCAAGCTTG+GGG + tig0024199:12984-13003 Msa1415270:CDS 45.0%
TGTGCCTCTTCATTGCTATC+TGG + tig0024199:13087-13106 Msa1415270:CDS 45.0%
!! TTGCTTTGGTGCTCTCACTT+TGG + tig0024199:13193-13212 Msa1415270:CDS 45.0%
!! TGCTTTGGTGCTCTCACTTT+GGG + tig0024199:13194-13213 Msa1415270:CDS 45.0%
!! CTAGCTTTGTACCCAACTTG+AGG + tig0024199:13377-13396 Msa1415270:three_prime_UTR 45.0%
!! ATGTTTAATTAATATTTAAT+TGG - tig0024199:12770-12789 None:intergenic 5.0%
TGGTCCACCACATGTTCCTA+TGG - tig0024199:11243-11262 None:intergenic 50.0%
!! TGCCGTTAGGGTTTTGGTAG+CGG - tig0024199:11394-11413 None:intergenic 50.0%
GCCGAAGCGATAAACAAAGG+TGG - tig0024199:11449-11468 None:intergenic 50.0%
! CTCACACTTAGCTTTCACCG+CGG + tig0024199:11559-11578 Msa1415270:CDS 50.0%
!!! GACCCTTGGGAGTGTTGTTT+TGG + tig0024199:11646-11665 Msa1415270:CDS 50.0%
GTGCCAAAACAACACTCCCA+AGG - tig0024199:11652-11671 None:intergenic 50.0%
!! CGACTCCGCGTTTTGTTAAG+GGG - tig0024199:12892-12911 None:intergenic 50.0%
CGATTTCGCAGGTGATTCCA+AGG + tig0024199:12959-12978 Msa1415270:intron 50.0%
AGGTGATTCCAAGGGAAGCA+AGG + tig0024199:12968-12987 Msa1415270:intron 50.0%
GGTGATTCCAAGGGAAGCAA+GGG + tig0024199:12969-12988 Msa1415270:intron 50.0%
AGCAGAGAAAGGGGTTGCTT+TGG + tig0024199:13179-13198 Msa1415270:CDS 50.0%
!! GCTTTGGTGCTCTCACTTTG+GGG + tig0024199:13195-13214 Msa1415270:CDS 50.0%
TCCATGGCGGCAAACGTGTA+TGG + tig0024199:11285-11304 Msa1415270:CDS 55.0%
! AGCGGTAACGGTAACGGTTG+TGG - tig0024199:11376-11395 None:intergenic 55.0%
GCAGTCATCGGAGTTCTCAC+CGG + tig0024199:11467-11486 Msa1415270:CDS 55.0%
! CTGCGGCATAAAGCGTCTAC+CGG + tig0024199:11511-11530 Msa1415270:CDS 55.0%
CGCGGTGAAAGCTAAGTGTG+AGG - tig0024199:11561-11580 None:intergenic 55.0%
ATAACAAGAGGGCCCTAGCC+CGG + tig0024199:12850-12869 Msa1415270:intron 55.0%
GCCATACACGTTTGCCGCCA+TGG - tig0024199:11289-11308 None:intergenic 60.0%
GACGACTACCTCTACGCCTG+CGG + tig0024199:11494-11513 Msa1415270:CDS 60.0%
GCTTTATGCCGCAGGCGTAG+AGG - tig0024199:11505-11524 None:intergenic 60.0%
CGGTAGACGCTTTATGCCGC+AGG - tig0024199:11513-11532 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0024199 gene 11038 13502 11038 ID=Msa1415270;Name=Msa1415270
tig0024199 mRNA 11038 13502 11038 ID=Msa1415270-mRNA-1;Parent=Msa1415270;Name=Msa1415270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=114|1|1|1|1|1|2|191|366
tig0024199 exon 11038 11910 11038 ID=Msa1415270-mRNA-1:exon:22279;Parent=Msa1415270-mRNA-1
tig0024199 exon 12970 13502 12970 ID=Msa1415270-mRNA-1:exon:22280;Parent=Msa1415270-mRNA-1
tig0024199 five_prime_UTR 11038 11151 11038 ID=Msa1415270-mRNA-1:five_prime_utr;Parent=Msa1415270-mRNA-1
tig0024199 CDS 11152 11910 11152 ID=Msa1415270-mRNA-1:cds;Parent=Msa1415270-mRNA-1
tig0024199 CDS 12970 13311 12970 ID=Msa1415270-mRNA-1:cds;Parent=Msa1415270-mRNA-1
tig0024199 three_prime_UTR 13312 13502 13312 ID=Msa1415270-mRNA-1:three_prime_utr;Parent=Msa1415270-mRNA-1
Gene Sequence

>Msa1415270

ATGGTGGAAAGAATAATTAGCAAAGAAGAAGAAAGCAAAAAAAGAAGCATGAAGAAACTCCTTCTAATACTAAACTCAATCCTCTTAGCCATAGGAACATGTGGTGGACCACTAGTAATGCGTTTATACTTCATCCATGGCGGCAAACGTGTATGGCTCTCAAGCTTCCTTGAAACATCTGCCTTCCCAATAATTCTCATTCCCTTAACCATTTCTCACATCCACAACCGTTACCGTTACCGCTACCAAAACCCTAACGGCAACAACAATAATAACAACTTTGTCTCAATGAAACCACCTTTGTTTATCGCTTCGGCAGTCATCGGAGTTCTCACCGGTTTAGACGACTACCTCTACGCCTGCGGCATAAAGCGTCTACCGGTGTCAACTTCTTCGTTAATTCAATCCTCACACTTAGCTTTCACCGCGGTTTTCGCGTTTTTTCTTGTGAAGCATAAGTTCACAGCTTATTCTGTTAACTCTATTGTTTTGTTGACCCTTGGGAGTGTTGTTTTGGCACTGAATTCTGATGGTGGAGATAGACTTGTTGGTGAGTCTACTAAGGATTATGTGATTGGTTTTGTTATGATATTGGCTTCTGCTGCTTTGTATGGATTTGTTTTACCGTTGTTGGAGTTGGTTTATAAAAAGAGTAAACAAGCTATTACTTATTCTCTTGTTATGGAGATTCAGCTTGTTATGTGCTTCTTTGCTACTTTGTTTTGCGTTGTTGGGATGATCATAGACAATGATTTTAAGGTGATTCCAAGGGAAGCAAGGGATTTCAAGCTTGGGGAAACAAAGTACTATGTTGTGCTAGTGTGGAGTGCTATAATGTGGCAATTTTTCTTCTTAGGAGCGATTGGAGTTATCTTTTGTGCCTCTTCATTGCTATCTGGTATTATAATTGCTGCATTTCTTCCCATAACTGAAATCTTAGCTGTTATTGTTTACAAAGAGAAATTTCAAGCAGAGAAAGGGGTTGCTTTGGTGCTCTCACTTTGGGGCTTTGTGTCTTACTTTTATGATGAGATTAAAGAAGCAAAAAAAATGAAAAATAGAGAAATGGAACTGCCTCAAAGTCTTCATTCAATCACATGA

Protein sequence

>Msa1415270

MVERIISKEEESKKRSMKKLLLILNSILLAIGTCGGPLVMRLYFIHGGKRVWLSSFLETSAFPIILIPLTISHIHNRYRYRYQNPNGNNNNNNFVSMKPPLFIASAVIGVLTGLDDYLYACGIKRLPVSTSSLIQSSHLAFTAVFAFFLVKHKFTAYSVNSIVLLTLGSVVLALNSDGGDRLVGESTKDYVIGFVMILASAALYGFVLPLLELVYKKSKQAITYSLVMEIQLVMCFFATLFCVVGMIIDNDFKVIPREARDFKLGETKYYVVLVWSAIMWQFFFLGAIGVIFCASSLLSGIIIAAFLPITEILAVIVYKEKFQAEKGVALVLSLWGFVSYFYDEIKEAKKMKNREMELPQSLHSIT*