AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1152500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152500 MtrunA17_Chr7g0242691 88.247 519 37 1 3 497 1 519 0.0 956
Msa1152500 MtrunA17_Chr7g0242681 69.866 521 132 2 1 497 6 525 0.0 744
Msa1152500 MtrunA17_Chr4g0006971 64.008 489 152 1 32 496 26 514 0.0 664
Msa1152500 MtrunA17_Chr1g0195611 56.442 489 185 4 34 497 28 513 0.0 557
Msa1152500 MtrunA17_Chr5g0428831 56.122 490 186 5 34 497 28 514 0.0 550
Msa1152500 MtrunA17_Chr1g0195641 55.990 384 141 4 35 393 29 409 3.55e-150 435
Msa1152500 MtrunA17_Chr4g0043091 41.616 495 250 6 15 472 10 502 5.65e-139 410
Msa1152500 MtrunA17_Chr2g0329191 43.841 479 230 6 32 473 33 509 1.33e-134 399
Msa1152500 MtrunA17_Chr2g0329201 42.829 509 251 6 3 473 1 507 8.42e-134 397
Msa1152500 MtrunA17_Chr4g0033271 42.209 507 250 8 5 473 10 511 1.10e-133 396
Msa1152500 MtrunA17_Chr3g0087261 42.688 506 240 10 11 471 7 507 4.08e-133 395
Msa1152500 MtrunA17_Chr6g0482131 44.906 481 225 7 32 474 35 513 1.01e-132 394
Msa1152500 MtrunA17_Chr4g0033311 43.867 481 230 7 32 474 38 516 2.61e-131 391
Msa1152500 MtrunA17_Chr6g0482081 44.075 481 230 6 32 474 35 514 5.71e-130 387
Msa1152500 MtrunA17_Chr4g0033191 42.916 487 222 8 33 473 43 519 3.20e-129 385
Msa1152500 MtrunA17_Chr2g0317841 41.529 484 244 5 33 480 32 512 1.47e-128 384
Msa1152500 MtrunA17_Chr3g0087271 42.941 510 236 11 12 473 8 510 2.72e-128 383
Msa1152500 MtrunA17_Chr2g0329321 43.983 482 252 8 5 473 12 488 7.17e-128 381
Msa1152500 MtrunA17_Chr2g0317821 41.116 484 246 5 33 480 32 512 9.53e-128 382
Msa1152500 MtrunA17_Chr4g0033201 40.509 511 255 8 9 473 5 512 1.01e-127 381
Msa1152500 MtrunA17_Chr4g0033321 42.094 487 242 7 23 471 23 507 1.27e-126 379
Msa1152500 MtrunA17_Chr3g0088441 40.856 514 256 9 1 474 10 515 1.90e-126 379
Msa1152500 MtrunA17_Chr4g0033341 42.531 482 231 10 32 473 68 543 3.15e-126 379
Msa1152500 MtrunA17_Chr4g0010501 42.276 492 246 7 16 473 7 494 3.88e-126 377
Msa1152500 MtrunA17_Chr4g0033401 40.848 519 263 9 3 483 6 518 4.60e-126 377
Msa1152500 MtrunA17_Chr6g0482071 41.487 511 253 9 2 474 12 514 7.14e-126 377
Msa1152500 MtrunA17_Chr4g0033331 41.633 490 243 8 32 483 38 522 9.43e-124 371
Msa1152500 MtrunA17_Chr4g0042171 40.039 507 264 8 17 486 8 511 6.19e-120 361
Msa1152500 MtrunA17_Chr4g0074551 37.333 525 281 9 1 488 25 538 3.20e-116 353
Msa1152500 MtrunA17_Chr2g0288021 38.994 477 251 6 32 471 34 507 2.30e-115 350
Msa1152500 MtrunA17_Chr4g0074561 38.819 474 247 8 38 471 40 510 2.49e-115 350
Msa1152500 MtrunA17_Chr5g0430451 43.534 464 237 8 32 473 38 498 4.97e-115 348
Msa1152500 MtrunA17_Chr3g0090131 39.623 477 237 8 33 472 21 483 5.54e-115 348
Msa1152500 MtrunA17_Chr6g0482951 39.419 482 243 7 32 474 42 513 6.47e-114 346
Msa1152500 MtrunA17_Chr4g0033261 40.041 482 223 8 32 474 40 494 8.67e-114 345
Msa1152500 MtrunA17_Chr3g0090111 39.130 483 242 8 27 472 13 480 9.53e-114 345
Msa1152500 MtrunA17_Chr2g0288071 39.831 472 243 8 40 473 74 542 1.71e-113 346
Msa1152500 MtrunA17_Chr4g0033231 38.000 500 244 8 13 473 21 493 3.55e-112 341
Msa1152500 MtrunA17_Chr6g0482941 39.212 482 244 7 32 474 42 513 4.26e-111 338
Msa1152500 MtrunA17_Chr5g0418871 47.003 317 143 2 52 343 2 318 3.15e-100 305
Msa1152500 MtrunA17_Chr4g0006131 34.055 508 264 7 11 473 20 501 8.27e-94 294
Msa1152500 MtrunA17_Chr4g0006111 34.263 502 256 8 19 473 51 525 5.22e-92 290
Msa1152500 MtrunA17_Chr7g0234091 35.897 468 262 10 34 473 76 533 2.74e-85 273
Msa1152500 MtrunA17_Chr7g0234111 36.207 464 262 9 34 471 76 531 9.83e-85 271
Msa1152500 MtrunA17_Chr7g0234131 34.958 472 258 9 34 471 76 532 5.37e-83 266
Msa1152500 MtrunA17_Chr3g0087201 40.785 331 186 4 150 473 17 344 6.27e-79 250
Msa1152500 MtrunA17_Chr2g0301231 37.179 390 203 6 99 473 30 392 2.41e-77 247
Msa1152500 MtrunA17_Chr7g0230651 38.037 326 182 5 98 416 63 375 8.73e-67 219
Msa1152500 MtrunA17_Chr8g0352881 73.016 126 24 1 220 335 35 160 2.37e-57 187
Msa1152500 MtrunA17_Chr8g0352881 52.632 133 51 2 40 172 5 125 2.85e-32 121
Msa1152500 MtrunA17_Chr7g0236731 40.486 247 140 2 98 343 31 271 1.14e-54 185
Msa1152500 MtrunA17_Chr3g0087191 49.359 156 52 2 21 149 10 165 2.40e-41 145
Msa1152500 MtrunA17_Chr7g0227561 36.111 252 144 8 34 280 47 286 2.25e-40 147
Msa1152500 MtrunA17_Chr1g0195651 53.947 76 35 0 422 497 1 76 1.35e-19 83.2
Msa1152500 MtrunA17_Chr2g0288031 57.377 61 25 1 158 218 4 63 9.00e-18 77.4
Msa1152500 MtrunA17_Chr5g0418861 48.718 78 38 2 395 471 14 90 5.56e-17 76.3
Msa1152500 MtrunA17_Chr4g0068871 24.866 374 226 10 98 471 214 532 2.83e-16 81.6
Msa1152500 MtrunA17_Chr7g0227591 50.000 54 26 1 418 471 13 65 1.13e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152500 AT1G02850.2 55.864 469 178 4 29 472 22 486 0.0 551
Msa1152500 AT1G02850.5 53.252 492 178 5 29 472 22 509 0.0 540
Msa1152500 AT1G02850.4 53.144 493 178 6 29 472 22 510 0.0 536
Msa1152500 AT1G02850.1 53.305 469 163 5 29 472 22 459 4.72e-179 511
Msa1152500 AT4G27830.1 50.103 487 210 6 14 471 2 484 3.11e-172 495
Msa1152500 AT1G60090.2 49.016 508 217 10 12 486 1 499 2.88e-168 485
Msa1152500 AT4G22100.1 48.317 505 217 8 16 485 3 498 1.31e-167 483
Msa1152500 AT1G45191.2 48.509 503 210 9 12 475 1 493 1.21e-165 478
Msa1152500 AT1G60090.1 47.876 518 215 11 12 486 1 506 2.13e-164 475
Msa1152500 AT1G45191.4 47.904 501 210 9 12 475 1 487 5.02e-164 474
Msa1152500 AT1G45191.6 47.835 508 211 9 12 475 1 498 1.13e-163 473
Msa1152500 AT4G27820.1 50.535 467 198 4 32 471 22 482 3.30e-163 472
Msa1152500 AT1G45191.1 47.481 516 213 10 12 475 1 510 3.42e-163 473
Msa1152500 AT3G62750.1 48.240 483 202 8 20 471 8 473 3.51e-159 461
Msa1152500 AT3G62750.2 48.240 483 202 8 20 471 34 499 1.29e-158 461
Msa1152500 AT1G02850.3 52.826 407 140 5 29 387 22 424 2.27e-152 442
Msa1152500 AT3G62740.1 45.283 477 228 5 21 471 9 478 2.87e-148 434
Msa1152500 AT4G27830.2 52.910 378 174 2 96 471 21 396 3.00e-146 426
Msa1152500 AT4G27820.2 53.298 379 172 2 96 471 21 397 1.15e-140 411
Msa1152500 AT4G27820.3 53.298 379 172 2 96 471 21 397 1.15e-140 411
Msa1152500 AT1G26560.1 42.138 477 236 7 33 471 32 506 2.49e-134 398
Msa1152500 AT3G62750.4 47.564 431 178 8 20 419 34 447 1.17e-132 392
Msa1152500 AT3G62750.6 49.869 381 173 5 96 471 21 388 1.43e-130 385
Msa1152500 AT3G62750.5 49.869 381 173 5 96 471 21 388 1.43e-130 385
Msa1152500 AT2G44480.1 41.841 478 237 7 32 471 34 508 3.36e-127 380
Msa1152500 AT2G44480.3 41.841 478 237 7 32 471 65 539 1.04e-126 380
Msa1152500 AT1G45191.5 48.837 387 155 7 12 361 1 381 4.92e-125 371
Msa1152500 AT3G62740.2 45.024 422 199 5 21 416 9 423 5.27e-125 371
Msa1152500 AT1G45191.3 49.731 372 144 7 12 348 1 364 2.11e-124 370
Msa1152500 AT1G60270.1 50.278 360 142 6 21 348 6 360 8.15e-121 359
Msa1152500 AT3G62750.7 49.580 357 134 6 20 345 8 349 2.47e-120 357
Msa1152500 AT3G62750.8 49.580 357 134 6 20 345 8 349 2.47e-120 357
Msa1152500 AT3G62750.3 49.444 360 136 6 20 348 34 378 6.15e-120 359
Msa1152500 AT1G61820.1 39.489 509 263 9 7 473 1 506 8.62e-120 361
Msa1152500 AT5G44640.1 40.675 504 259 8 8 474 4 504 6.13e-119 359
Msa1152500 AT3G18080.1 39.375 480 243 6 33 473 39 509 1.06e-117 356
Msa1152500 AT5G42260.1 40.717 474 243 7 29 467 27 497 7.54e-116 351
Msa1152500 AT2G25630.1 40.771 493 247 8 12 474 9 486 8.51e-116 350
Msa1152500 AT2G44450.1 39.130 483 257 6 29 477 27 506 6.58e-114 346
Msa1152500 AT5G24550.1 38.723 501 262 8 29 486 28 526 1.59e-112 343
Msa1152500 AT3G18070.3 39.375 480 235 8 33 473 30 492 6.16e-111 338
Msa1152500 AT3G18070.1 39.375 480 241 8 33 473 30 498 3.19e-110 336
Msa1152500 AT5G54570.1 38.923 483 252 9 29 471 26 505 3.84e-110 337
Msa1152500 AT3G60140.1 38.776 490 242 9 32 473 25 504 7.63e-110 338
Msa1152500 AT2G44480.2 43.490 384 203 5 99 471 26 406 1.32e-109 332
Msa1152500 AT1G61810.1 39.158 475 247 9 38 473 38 509 1.89e-109 335
Msa1152500 AT2G44470.3 36.471 510 282 8 10 479 6 513 8.25e-109 335
Msa1152500 AT4G21760.2 36.481 466 261 7 38 471 59 521 9.34e-108 331
Msa1152500 AT3G60130.1 39.368 475 250 7 33 472 30 501 1.63e-107 330
Msa1152500 AT5G24540.1 40.283 494 244 10 29 476 28 516 1.87e-106 328
Msa1152500 AT5G26000.1 38.320 488 252 9 33 478 38 518 3.95e-106 327
Msa1152500 AT4G21760.1 36.957 460 257 8 38 471 59 511 1.90e-105 325
Msa1152500 AT5G25980.2 39.228 492 247 13 33 481 50 532 1.20e-104 323
Msa1152500 AT2G32860.2 37.822 505 266 12 22 483 84 583 2.20e-104 325
Msa1152500 AT1G51470.1 38.302 483 248 10 29 473 41 511 3.12e-103 318
Msa1152500 AT5G36890.1 38.750 480 237 9 34 472 17 480 3.36e-103 318
Msa1152500 AT5G36890.2 38.750 480 237 9 34 472 17 480 3.78e-103 318
Msa1152500 AT1G47600.2 38.174 482 249 10 29 473 41 510 3.88e-103 318
Msa1152500 AT1G61810.3 36.874 499 273 9 38 497 38 533 4.39e-103 319
Msa1152500 AT1G47600.1 38.095 483 249 10 29 473 41 511 5.00e-103 318
Msa1152500 AT2G32860.1 37.747 506 264 13 22 483 84 582 8.00e-102 318
Msa1152500 AT3G60120.1 37.143 490 261 10 26 473 7 491 7.19e-101 313
Msa1152500 AT2G44490.1 36.660 491 261 10 27 472 8 493 2.14e-100 313
Msa1152500 AT3G09260.1 37.014 489 263 9 26 473 28 512 3.13e-100 311
Msa1152500 AT2G44460.1 37.205 508 270 9 10 474 6 507 1.64e-98 308
Msa1152500 AT1G61810.5 40.827 387 213 5 99 472 25 408 1.29e-97 301
Msa1152500 AT2G44480.4 46.914 324 140 5 32 325 65 386 1.63e-97 300
Msa1152500 AT1G75940.1 37.190 484 256 11 33 471 37 517 2.20e-97 304
Msa1152500 AT1G66280.1 36.634 505 270 12 10 471 13 510 3.62e-97 303
Msa1152500 AT3G21370.1 36.561 506 263 12 28 483 28 525 1.35e-96 302
Msa1152500 AT5G54570.2 41.176 391 212 7 96 471 21 408 1.73e-96 299
Msa1152500 AT1G60270.2 54.150 253 112 3 96 346 21 271 1.19e-94 289
Msa1152500 AT5G28510.1 37.247 494 262 10 32 480 38 528 1.62e-94 296
Msa1152500 AT3G03640.1 35.067 519 283 13 4 475 5 516 2.16e-94 296
Msa1152500 AT1G66270.1 36.735 490 258 12 28 473 31 512 1.08e-93 294
Msa1152500 AT5G54570.3 38.084 428 224 7 29 417 26 451 1.24e-93 292
Msa1152500 AT3G60140.2 40.051 392 197 5 33 389 26 414 2.12e-93 291
Msa1152500 AT1G61820.3 40.599 367 202 5 120 473 4 367 2.17e-93 289
Msa1152500 AT1G52400.3 36.345 498 255 12 37 484 43 528 4.82e-93 293
Msa1152500 AT1G52400.1 36.345 498 255 12 37 484 43 528 4.82e-93 293
Msa1152500 AT5G26000.2 38.498 426 214 8 33 417 38 456 9.60e-92 287
Msa1152500 AT2G44470.1 35.650 446 247 6 10 416 6 450 3.93e-91 285
Msa1152500 AT1G66270.2 36.327 490 258 13 28 473 31 510 3.59e-90 285
Msa1152500 AT3G18070.2 36.623 456 210 10 33 473 30 421 4.29e-89 279
Msa1152500 AT3G60130.2 39.426 383 221 5 98 472 70 449 2.22e-88 278
Msa1152500 AT3G60130.3 39.418 378 217 5 98 472 70 438 2.71e-88 278
Msa1152500 AT5G24540.2 39.211 431 215 7 29 416 28 454 4.72e-88 278
Msa1152500 AT2G44470.2 39.710 345 181 2 10 327 6 350 1.19e-87 275
Msa1152500 AT5G25980.3 39.202 426 210 11 33 417 50 467 1.49e-87 276
Msa1152500 AT5G25980.1 39.202 426 210 11 33 417 50 467 1.49e-87 276
Msa1152500 AT1G61810.4 38.974 390 204 7 33 389 33 421 1.14e-84 268
Msa1152500 AT3G18070.4 41.194 335 170 3 33 343 30 361 3.39e-84 265
Msa1152500 AT2G44450.2 37.709 358 213 4 127 477 1 355 3.11e-82 259
Msa1152500 AT5G16580.1 46.975 281 136 6 152 427 27 299 5.64e-73 233
Msa1152500 AT1G52400.2 35.891 404 206 9 37 398 43 435 7.62e-73 238
Msa1152500 AT2G44460.2 40.054 367 197 8 125 474 1 361 2.20e-72 236
Msa1152500 AT5G48375.1 35.945 434 189 11 33 436 38 412 1.49e-71 234
Msa1152500 AT3G18070.7 39.748 317 167 6 172 473 2 309 1.44e-70 228
Msa1152500 AT2G44480.5 38.361 305 174 6 178 471 1 302 7.81e-68 220
Msa1152500 AT3G18070.5 35.422 367 164 8 32 387 29 333 6.39e-65 214
Msa1152500 AT1G61810.2 42.697 267 126 5 33 273 33 298 6.52e-65 213
Msa1152500 AT1G51490.1 38.318 321 152 9 41 330 28 333 1.83e-56 194
Msa1152500 AT3G18070.6 39.207 227 120 4 172 387 2 221 1.35e-46 162
Msa1152500 AT3G06510.2 22.581 403 249 11 98 479 191 551 5.20e-15 78.2
Msa1152500 AT3G06510.1 23.969 388 228 11 98 479 191 517 2.11e-13 73.2

Find 120 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATGCAACATGGATTTAT+TGG 0.188121 7_4:-38197354 Msa1152500:CDS
CATGTATAATTTCATCTCTT+TGG 0.196414 7_4:+38199343 None:intergenic
CATACTCATTATTGTGCTTA+TGG 0.203177 7_4:+38199277 None:intergenic
GCTACCATGTAAATGAATTA+AGG 0.218966 7_4:-38195875 Msa1152500:three_prime_UTR
GGGTTTAATCTTCTTACTTT+TGG 0.226899 7_4:-38197333 Msa1152500:CDS
CCAATTTACATACATGAAAA+TGG 0.227583 7_4:-38196484 Msa1152500:intron
TAGCACCTCTTGAAAATTCT+TGG 0.231909 7_4:+38196537 None:intergenic
TATTACTTGAAGAATGATTA+TGG 0.244024 7_4:-38196514 Msa1152500:CDS
TTCTTCAACTGAGCCATATT+TGG 0.244204 7_4:-38197559 Msa1152500:CDS
TCCTCCATGTTCAGGCTTGC+AGG 0.244360 7_4:+38196913 None:intergenic
GCAATGTTTGGCTATGATAT+TGG 0.252000 7_4:-38197639 Msa1152500:CDS
TTGTAATATTGTAGTCCTTT+AGG 0.270990 7_4:+38198074 None:intergenic
AAGAACTCAATTGACTTCTT+AGG 0.276518 7_4:-38196973 Msa1152500:CDS
TGAAAATTCTTGGTTGTAAT+CGG 0.280116 7_4:+38196547 None:intergenic
GGATAATCACCAAATGTTAA+TGG 0.283735 7_4:+38197063 None:intergenic
CGCCTTGTAATATCAAGTTT+GGG 0.286042 7_4:-38195918 Msa1152500:three_prime_UTR
ACGCCTTGTAATATCAAGTT+TGG 0.288208 7_4:-38195919 Msa1152500:three_prime_UTR
ATATGATGAGCTGCCAAATA+TGG 0.293208 7_4:+38197546 None:intergenic
GTCAATATTTATGCAATGTT+TGG 0.295176 7_4:-38197651 Msa1152500:CDS
TATGGACTCAAAGATTATTA+TGG 0.302914 7_4:-38195988 Msa1152500:CDS
GCAATTCATCCTTGAATGAT+TGG 0.325758 7_4:-38196343 Msa1152500:CDS
AGGAGTGGATCGAATATAAA+AGG 0.329006 7_4:-38196164 Msa1152500:CDS
TTCCCTTCTGACTTTGTGTT+TGG 0.340012 7_4:-38199152 Msa1152500:CDS
AACCTAAGCTCTCTGCTAAA+TGG 0.340098 7_4:-38196037 Msa1152500:CDS
AGTGGATATGAAGAAAGTTT+TGG 0.348235 7_4:-38196101 Msa1152500:CDS
GATGTGTGCTTCAAAGAATT+TGG 0.353470 7_4:-38197708 Msa1152500:CDS
CACATGTTACATTACATCAT+TGG 0.353709 7_4:-38197937 Msa1152500:CDS
GTATGCAACATGGATTTATT+GGG 0.354904 7_4:-38197353 Msa1152500:CDS
CATAAGCACAATAATGAGTA+TGG 0.359508 7_4:-38199276 Msa1152500:exon
GGACCATAGCTAATGAAATA+AGG 0.360367 7_4:-38196289 Msa1152500:intron
TTGTAGTCCTTTAGGATTGA+TGG 0.365010 7_4:+38198082 None:intergenic
ACCTTTGCCCATGGTGGAAA+TGG 0.365475 7_4:-38198746 Msa1152500:intron
GTTCTAAATCCATTAACATT+TGG 0.377842 7_4:-38197072 Msa1152500:CDS
CCTTGAGCAGTTAGCTAGAA+AGG 0.388723 7_4:+38197587 None:intergenic
CATCCTTGAATGATTGGTCT+AGG 0.400119 7_4:-38196337 Msa1152500:CDS
AATCTCTATCCTCCATGTTC+AGG 0.412420 7_4:+38196905 None:intergenic
CAATCACTTGAGGATGAGTA+TGG 0.413167 7_4:-38197905 Msa1152500:CDS
ATGGCAGGAAACCAAGCATA+TGG 0.425229 7_4:-38198772 Msa1152500:CDS
ACATGTTACATTACATCATT+GGG 0.438409 7_4:-38197936 Msa1152500:CDS
TAGAGATTACATGCAAGATA+TGG 0.438663 7_4:-38196890 Msa1152500:CDS
AACTATAAGCACTAGGGAAA+AGG 0.440558 7_4:+38199189 None:intergenic
CACCCTAGACCAATCATTCA+AGG 0.449983 7_4:+38196334 None:intergenic
CATTCATATCTATGTAGTAT+AGG 0.450480 7_4:+38196078 None:intergenic
ACCACCCCATCATGAAGTCT+TGG 0.455704 7_4:+38197259 None:intergenic
GTACCTTATTTCATTAGCTA+TGG 0.466073 7_4:+38196286 None:intergenic
ATTGTACAGGAAGAAATATA+AGG 0.468830 7_4:-38197496 Msa1152500:intron
CCACCCCATCATGAAGTCTT+GGG 0.477044 7_4:+38197260 None:intergenic
GCTTCCTTCCTTCACAGTAA+AGG 0.481084 7_4:-38197010 Msa1152500:CDS
CCTTTCTAGCTAACTGCTCA+AGG 0.483493 7_4:-38197587 Msa1152500:CDS
TGTAGTCCTTTAGGATTGAT+GGG 0.486907 7_4:+38198083 None:intergenic
TACCATTTAGCAGAGAGCTT+AGG 0.487228 7_4:+38196035 None:intergenic
TAATGGTATTGGAAGTTTGA+AGG 0.498314 7_4:-38198809 Msa1152500:intron
TTGGCGATCGAGTTAAGTAC+TGG 0.498355 7_4:-38197689 Msa1152500:CDS
TCTTCAATAGTATTTGTAAG+TGG 0.501287 7_4:+38197303 None:intergenic
AGGAAATATGAGAAGGCAAA+GGG 0.505224 7_4:+38195949 None:intergenic
AAGATATAATTGCCACTCAA+AGG 0.508182 7_4:-38197284 Msa1152500:CDS
GACAATACCATTTCCACCAT+GGG 0.514101 7_4:+38198739 None:intergenic
ATAATAATCTTTGAGTCCAT+AGG 0.526124 7_4:+38195990 None:intergenic
AGTACTTGCATAAATACATT+GGG 0.526639 7_4:-38196310 Msa1152500:CDS
ATCCTTGAATGATTGGTCTA+GGG 0.527356 7_4:-38196336 Msa1152500:CDS
AGATATAATTGCCACTCAAA+GGG 0.530461 7_4:-38197283 Msa1152500:CDS
CAATCCTGCAAGCCTGAACA+TGG 0.535121 7_4:-38196917 Msa1152500:CDS
TTGTTCAAACTATAAGCACT+AGG 0.539164 7_4:+38199182 None:intergenic
ATTTGATTCCTTTACTGTGA+AGG 0.542853 7_4:+38197002 None:intergenic
ATGTAAATGAATTAAGGATG+TGG 0.543047 7_4:-38195869 Msa1152500:three_prime_UTR
ACATCCTTAATTCATTTACA+TGG 0.543442 7_4:+38195871 None:intergenic
GATGTAATGTAACATGTGCT+TGG 0.543711 7_4:+38197942 None:intergenic
CTTCAGCTGCAAGATTGTAC+AGG 0.549650 7_4:-38197509 Msa1152500:CDS
AAAGGACCCATCAATCCTAA+AGG 0.554693 7_4:-38198089 Msa1152500:CDS
GTGCAGCAAATGAAGATGGC+AGG 0.555499 7_4:-38198787 Msa1152500:CDS
GCAAAGGTATCCCATATGCT+TGG 0.555595 7_4:+38198761 None:intergenic
TGGCAGGAAACCAAGCATAT+GGG 0.560662 7_4:-38198771 Msa1152500:CDS
CGATGGATATCACAAATACA+AGG 0.562182 7_4:-38198586 Msa1152500:CDS
AGGGCCCAAGACTTCATGAT+GGG 0.562999 7_4:-38197264 Msa1152500:CDS
CTTTCTAGCTAACTGCTCAA+GGG 0.564017 7_4:-38197586 Msa1152500:CDS
AAGTACTTGCATAAATACAT+TGG 0.567174 7_4:-38196311 Msa1152500:CDS
GAGCAGTTAGCTAGAAAGGA+AGG 0.568345 7_4:+38197591 None:intergenic
TACTCATCCTCAAGTGATTG+TGG 0.568481 7_4:+38197908 None:intergenic
GACGGAGATATTGCATGCGA+TGG 0.570077 7_4:-38198603 Msa1152500:CDS
GTACTGGACCACGGTGAATG+AGG 0.570570 7_4:-38197673 Msa1152500:CDS
GATTCCTTTACTGTGAAGGA+AGG 0.570998 7_4:+38197006 None:intergenic
GAAGTCTTGGGCCCTTTGAG+TGG 0.571906 7_4:+38197272 None:intergenic
GAAGGTGCAGCAAATGAAGA+TGG 0.573414 7_4:-38198791 Msa1152500:CDS
ACCATTTCCACCATGGGCAA+AGG 0.574344 7_4:+38198745 None:intergenic
TGAGGATGAGTATGGAGGAT+GGG 0.579691 7_4:-38197897 Msa1152500:CDS
ACACCAAACACAAAGTCAGA+AGG 0.580548 7_4:+38199149 None:intergenic
ATGTATTTACCAGATGGTAA+AGG 0.581242 7_4:-38198107 Msa1152500:intron
TATTACAAGGCGTTATAGCA+AGG 0.582965 7_4:+38195929 None:intergenic
GCCTTGTAATATCAAGTTTG+GGG 0.592909 7_4:-38195917 Msa1152500:three_prime_UTR
GCGAATATGTACAAGGGTGA+CGG 0.593362 7_4:-38198621 Msa1152500:CDS
TTGAGGATGAGTATGGAGGA+TGG 0.595097 7_4:-38197898 Msa1152500:CDS
GGACAATACCATTTCCACCA+TGG 0.595529 7_4:+38198738 None:intergenic
TGTTCAAACTATAAGCACTA+GGG 0.596146 7_4:+38199183 None:intergenic
CACCAAACACAAAGTCAGAA+GGG 0.600461 7_4:+38199150 None:intergenic
TATAGCAAGGAAATATGAGA+AGG 0.601057 7_4:+38195942 None:intergenic
AAGGGCCCAAGACTTCATGA+TGG 0.602550 7_4:-38197265 Msa1152500:CDS
TTTCTAGCTAACTGCTCAAG+GGG 0.603830 7_4:-38197585 Msa1152500:CDS
CCCAAGACTTCATGATGGGG+TGG 0.613603 7_4:-38197260 Msa1152500:intron
AAAGTGCAGGGTATGCAACA+TGG 0.615675 7_4:-38197363 Msa1152500:intron
GTTTGGCTATGATATTGGAA+TGG 0.622668 7_4:-38197634 Msa1152500:CDS
AAGGAAATATGAGAAGGCAA+AGG 0.622977 7_4:+38195948 None:intergenic
TGGGATACCTTTGCCCATGG+TGG 0.626698 7_4:-38198752 Msa1152500:CDS
TTACATGCAAGATATGGCAG+TGG 0.628249 7_4:-38196884 Msa1152500:CDS
TTGGAATGGCACCGCCTCAG+AGG 0.629344 7_4:-38197620 Msa1152500:CDS
ATATGGGATACCTTTGCCCA+TGG 0.631693 7_4:-38198755 Msa1152500:CDS
ATAAATGAACTGATAAGCCA+CGG 0.631869 7_4:-38198044 Msa1152500:intron
ATGGGTAAGAAATCAACACT+TGG 0.633373 7_4:-38199426 None:intergenic
AAATGATACATCAATAGATG+AGG 0.637241 7_4:-38196658 Msa1152500:intron
GGATCTACCACAATCACTTG+AGG 0.639081 7_4:-38197915 Msa1152500:CDS
GAAGGAGAACACCTCTGAGG+CGG 0.652236 7_4:+38197609 None:intergenic
CCTTGTAATATCAAGTTTGG+GGG 0.667605 7_4:-38195916 Msa1152500:three_prime_UTR
TCACTTGAGGATGAGTATGG+AGG 0.676589 7_4:-38197902 Msa1152500:CDS
GGGCCCAAGACTTCATGATG+GGG 0.691282 7_4:-38197263 Msa1152500:CDS
GGAAATATGAGAAGGCAAAG+GGG 0.692319 7_4:+38195950 None:intergenic
TATTTCAAGCACATCCACGA+AGG 0.708970 7_4:+38196127 None:intergenic
TCCTGCAAGCCTGAACATGG+AGG 0.718680 7_4:-38196914 Msa1152500:CDS
AAGGAAGGAGAACACCTCTG+AGG 0.721271 7_4:+38197606 None:intergenic
TCGAGTTAAGTACTGGACCA+CGG 0.736198 7_4:-38197682 Msa1152500:CDS
GATGTGCTTGAAATACTGAG+TGG 0.763343 7_4:-38196119 Msa1152500:CDS
AATATTGACCTCATTCACCG+TGG 0.768238 7_4:+38197665 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTAATTTATTTATGTATT+TGG - chr7_4:38198651-38198670 Msa1152500:intron 10.0%
!! ATATATGTTTGTTTACAATA+AGG + chr7_4:38196341-38196360 None:intergenic 15.0%
!! TTCATTCTTAATTAAAATAC+AGG - chr7_4:38196553-38196572 Msa1152500:CDS 15.0%
!! AAATACACAAAATTAAGAAA+TGG - chr7_4:38197460-38197479 Msa1152500:intron 15.0%
!!! TTTGTTTTAACTTGTTAAAA+GGG + chr7_4:38198480-38198499 None:intergenic 15.0%
!!! TTTTGTTTTAACTTGTTAAA+AGG + chr7_4:38198481-38198500 None:intergenic 15.0%
!! ATACATAAATAAATTACAAG+AGG + chr7_4:38198650-38198669 None:intergenic 15.0%
!! CAAATATAATAGTGTTATAA+AGG - chr7_4:38199006-38199025 Msa1152500:intron 15.0%
!!! ATATAAAAGGTTATTTTGTA+TGG - chr7_4:38199103-38199122 Msa1152500:intron 15.0%
!! TGCATCTTATACATATAAAT+TGG - chr7_4:38196745-38196764 Msa1152500:intron 20.0%
!! TCTAATATATTTCATCTTCT+AGG - chr7_4:38197286-38197305 Msa1152500:CDS 20.0%
!! TTATTTCAATCTATGACAAT+AGG + chr7_4:38197435-38197454 None:intergenic 20.0%
!!! TTAAGAAATGGTTTTTATTG+TGG - chr7_4:38197472-38197491 Msa1152500:intron 20.0%
!! AAATTAGATTGTAAGTAAAG+TGG + chr7_4:38197805-38197824 None:intergenic 20.0%
!! ATTTCTAAACTTTGCATTAT+GGG - chr7_4:38198064-38198083 Msa1152500:CDS 20.0%
!!! ACATTCTTTTTCATTATATC+AGG + chr7_4:38198215-38198234 None:intergenic 20.0%
!! GATATAATGAAAAAGAATGT+TGG - chr7_4:38198215-38198234 Msa1152500:intron 20.0%
!!! TTGTTTTAACTTGTTAAAAG+GGG + chr7_4:38198479-38198498 None:intergenic 20.0%
!! TATTACTTGAAGAATGATTA+TGG - chr7_4:38198740-38198759 Msa1152500:intron 20.0%
!!! AATATTGTGAAGATTTTGAA+AGG + chr7_4:38198837-38198856 None:intergenic 20.0%
!! TAAAGGATGTATAATGTATA+AGG - chr7_4:38199023-38199042 Msa1152500:intron 20.0%
! CATGTATAATTTCATCTCTT+TGG + chr7_4:38195914-38195933 None:intergenic 25.0%
!! AAATGCAAAAGCATAACATT+AGG + chr7_4:38196181-38196200 None:intergenic 25.0%
!!! GTACAATGTGTTATTTCATT+TGG + chr7_4:38196229-38196248 None:intergenic 25.0%
!! TTTTCAGACTATAATAAGTC+TGG - chr7_4:38196286-38196305 Msa1152500:intron 25.0%
! CATCATACTTATGACTATAA+TGG - chr7_4:38196428-38196447 Msa1152500:intron 25.0%
! ACTTATGACTATAATGGTAT+TGG - chr7_4:38196434-38196453 Msa1152500:intron 25.0%
! GAATGAAGTATATGTTAGTT+TGG + chr7_4:38196540-38196559 None:intergenic 25.0%
! ATAACAAAAGAATGTATGTG+TGG - chr7_4:38196716-38196735 Msa1152500:intron 25.0%
! CCATGATATTGAAAATCTAT+AGG + chr7_4:38196873-38196892 None:intergenic 25.0%
!! CCTATAGATTTTCAATATCA+TGG - chr7_4:38196870-38196889 Msa1152500:intron 25.0%
! TTGTAATATTGTAGTCCTTT+AGG + chr7_4:38197183-38197202 None:intergenic 25.0%
! ACATGTTACATTACATCATT+GGG - chr7_4:38197318-38197337 Msa1152500:CDS 25.0%
! GTCAATATTTATGCAATGTT+TGG - chr7_4:38197603-38197622 Msa1152500:CDS 25.0%
! ATTGTACAGGAAGAAATATA+AGG - chr7_4:38197758-38197777 Msa1152500:intron 25.0%
! TCTTCAATAGTATTTGTAAG+TGG + chr7_4:38197954-38197973 None:intergenic 25.0%
! ACATTGAAAAGAAAGATAAC+AGG + chr7_4:38198036-38198055 None:intergenic 25.0%
! CATTTCTAAACTTTGCATTA+TGG - chr7_4:38198063-38198082 Msa1152500:CDS 25.0%
! ATAGGACTAACTCTTAAAAT+AGG - chr7_4:38198092-38198111 Msa1152500:CDS 25.0%
! ATAGGAAATGTTAATGCATA+TGG - chr7_4:38198110-38198129 Msa1152500:intron 25.0%
!!! TGTTTATCATTTGTTATTGC+AGG - chr7_4:38198159-38198178 Msa1152500:intron 25.0%
!!! GTTTATCATTTGTTATTGCA+GGG - chr7_4:38198160-38198179 Msa1152500:intron 25.0%
!! GTTCTAAATCCATTAACATT+TGG - chr7_4:38198182-38198201 Msa1152500:intron 25.0%
!! GTTTTTCTGACATTTTCTAA+TGG - chr7_4:38198415-38198434 Msa1152500:intron 25.0%
! TTGTTTCAGTTTCTTGAAAA+TGG + chr7_4:38198540-38198559 None:intergenic 25.0%
! AAATGATACATCAATAGATG+AGG - chr7_4:38198596-38198615 Msa1152500:CDS 25.0%
! TGAAAATTCTTGGTTGTAAT+CGG + chr7_4:38198710-38198729 None:intergenic 25.0%
!! CCATTTTCATGTATGTAAAT+TGG + chr7_4:38198773-38198792 None:intergenic 25.0%
! CCAATTTACATACATGAAAA+TGG - chr7_4:38198770-38198789 Msa1152500:CDS 25.0%
!! TATGACAATTTTCCAACATA+TGG - chr7_4:38198793-38198812 Msa1152500:CDS 25.0%
! AAGTACTTGCATAAATACAT+TGG - chr7_4:38198943-38198962 Msa1152500:intron 25.0%
! AGTACTTGCATAAATACATT+GGG - chr7_4:38198944-38198963 Msa1152500:intron 25.0%
! TTTCAACGAGTCAAAAATAA+AGG + chr7_4:38199071-38199090 None:intergenic 25.0%
!!! TTTATTTTTGACTCGTTGAA+AGG - chr7_4:38199070-38199089 Msa1152500:intron 25.0%
! CATTCATATCTATGTAGTAT+AGG + chr7_4:38199179-38199198 None:intergenic 25.0%
! ATAATAATCTTTGAGTCCAT+AGG + chr7_4:38199267-38199286 None:intergenic 25.0%
! TATGGACTCAAAGATTATTA+TGG - chr7_4:38199266-38199285 Msa1152500:CDS 25.0%
! ACATCCTTAATTCATTTACA+TGG + chr7_4:38199386-38199405 None:intergenic 25.0%
! ATGTAAATGAATTAAGGATG+TGG - chr7_4:38199385-38199404 Msa1152500:five_prime_UTR 25.0%
CATACTCATTATTGTGCTTA+TGG + chr7_4:38195980-38195999 None:intergenic 30.0%
CATAAGCACAATAATGAGTA+TGG - chr7_4:38195978-38195997 Msa1152500:CDS 30.0%
TGTTCAAACTATAAGCACTA+GGG + chr7_4:38196074-38196093 None:intergenic 30.0%
TTGTTCAAACTATAAGCACT+AGG + chr7_4:38196075-38196094 None:intergenic 30.0%
AAAAGAGAGAAGAACAAACT+TGG + chr7_4:38196146-38196165 None:intergenic 30.0%
! TAATGGTATTGGAAGTTTGA+AGG - chr7_4:38196445-38196464 Msa1152500:intron 30.0%
! ATTTTCAGCGAATATGTACA+AGG - chr7_4:38196626-38196645 Msa1152500:intron 30.0%
! TTTTCAGCGAATATGTACAA+GGG - chr7_4:38196627-38196646 Msa1152500:intron 30.0%
! ATTTGCTTAGTGCGATTTTT+AGG + chr7_4:38196791-38196810 None:intergenic 30.0%
GTAAATACATAGGGATAAGA+TGG + chr7_4:38197137-38197156 None:intergenic 30.0%
TACCATCTGGTAAATACATA+GGG + chr7_4:38197146-38197165 None:intergenic 30.0%
TTACCATCTGGTAAATACAT+AGG + chr7_4:38197147-38197166 None:intergenic 30.0%
ATGTATTTACCAGATGGTAA+AGG - chr7_4:38197147-38197166 Msa1152500:intron 30.0%
ATAAATGAACTGATAAGCCA+CGG - chr7_4:38197210-38197229 Msa1152500:intron 30.0%
CACATGTTACATTACATCAT+TGG - chr7_4:38197317-38197336 Msa1152500:CDS 30.0%
GTTAGCGAAAAAATTGTGTA+TGG - chr7_4:38197379-38197398 Msa1152500:intron 30.0%
ATAGGTAACTCAAACAGAAT+GGG + chr7_4:38197417-38197436 None:intergenic 30.0%
AATAGGTAACTCAAACAGAA+TGG + chr7_4:38197418-38197437 None:intergenic 30.0%
ATCTATATATGTATGCTTGC+AGG - chr7_4:38197502-38197521 Msa1152500:CDS 30.0%
!! AAACAATCTTTCTAAAGTGC+AGG - chr7_4:38197878-38197897 Msa1152500:intron 30.0%
!! AACAATCTTTCTAAAGTGCA+GGG - chr7_4:38197879-38197898 Msa1152500:intron 30.0%
GTATGCAACATGGATTTATT+GGG - chr7_4:38197901-38197920 Msa1152500:CDS 30.0%
! GGGTTTAATCTTCTTACTTT+TGG - chr7_4:38197921-38197940 Msa1152500:CDS 30.0%
AAGATATAATTGCCACTCAA+AGG - chr7_4:38197970-38197989 Msa1152500:intron 30.0%
AGATATAATTGCCACTCAAA+GGG - chr7_4:38197971-38197990 Msa1152500:intron 30.0%
TTTGCATTATGGGATTTCAT+AGG - chr7_4:38198074-38198093 Msa1152500:CDS 30.0%
GGATAATCACCAAATGTTAA+TGG + chr7_4:38198194-38198213 None:intergenic 30.0%
TGAAAAAGAATGTTGGATCA+AGG - chr7_4:38198222-38198241 Msa1152500:intron 30.0%
ATTTGATTCCTTTACTGTGA+AGG + chr7_4:38198255-38198274 None:intergenic 30.0%
! AAGAACTCAATTGACTTCTT+AGG - chr7_4:38198281-38198300 Msa1152500:intron 30.0%
TAGAGATTACATGCAAGATA+TGG - chr7_4:38198364-38198383 Msa1152500:intron 30.0%
TTCTTGAAAATGGAGTAAAG+TGG + chr7_4:38198530-38198549 None:intergenic 30.0%
!! TACAACCAAGAATTTTCAAG+AGG - chr7_4:38198712-38198731 Msa1152500:intron 30.0%
! GTACCTTATTTCATTAGCTA+TGG + chr7_4:38198971-38198990 None:intergenic 30.0%
! AGTGGATATGAAGAAAGTTT+TGG - chr7_4:38199153-38199172 Msa1152500:CDS 30.0%
!! GGTACTCAAATTTTCTGAAA+AGG - chr7_4:38199238-38199257 Msa1152500:CDS 30.0%
!! TTTTCTGAAAAGGAAACCTA+TGG - chr7_4:38199248-38199267 Msa1152500:CDS 30.0%
TATAGCAAGGAAATATGAGA+AGG + chr7_4:38199315-38199334 None:intergenic 30.0%
GCTACCATGTAAATGAATTA+AGG - chr7_4:38199379-38199398 Msa1152500:five_prime_UTR 30.0%
AACTATAAGCACTAGGGAAA+AGG + chr7_4:38196068-38196087 None:intergenic 35.0%
CGATGGATATCACAAATACA+AGG - chr7_4:38196668-38196687 Msa1152500:CDS 35.0%
GTATCATTTCAGATCTTACC+TGG + chr7_4:38196908-38196927 None:intergenic 35.0%
! CATTTTACATCTGTCTTCGA+GGG - chr7_4:38196932-38196951 Msa1152500:CDS 35.0%
TGTATTCGACTCACTTGATT+TGG - chr7_4:38197034-38197053 Msa1152500:CDS 35.0%
!! CTTGATTTGGTTTAAGTGCA+TGG - chr7_4:38197047-38197066 Msa1152500:CDS 35.0%
ATCCCTATGTATTTACCAGA+TGG - chr7_4:38197141-38197160 Msa1152500:intron 35.0%
!! TGTAGTCCTTTAGGATTGAT+GGG + chr7_4:38197174-38197193 None:intergenic 35.0%
!! TTGTAGTCCTTTAGGATTGA+TGG + chr7_4:38197175-38197194 None:intergenic 35.0%
AATATAGTCTTCACAAACCG+TGG + chr7_4:38197230-38197249 None:intergenic 35.0%
GATGTAATGTAACATGTGCT+TGG + chr7_4:38197315-38197334 None:intergenic 35.0%
CAAACAGAATGGGAAAGTTT+GGG + chr7_4:38197407-38197426 None:intergenic 35.0%
TCAAACAGAATGGGAAAGTT+TGG + chr7_4:38197408-38197427 None:intergenic 35.0%
GATGTGTGCTTCAAAGAATT+TGG - chr7_4:38197546-38197565 Msa1152500:CDS 35.0%
GCAATGTTTGGCTATGATAT+TGG - chr7_4:38197615-38197634 Msa1152500:CDS 35.0%
GTTTGGCTATGATATTGGAA+TGG - chr7_4:38197620-38197639 Msa1152500:CDS 35.0%
TTCTTCAACTGAGCCATATT+TGG - chr7_4:38197695-38197714 Msa1152500:CDS 35.0%
ATATGATGAGCTGCCAAATA+TGG + chr7_4:38197711-38197730 None:intergenic 35.0%
GGTATGCAACATGGATTTAT+TGG - chr7_4:38197900-38197919 Msa1152500:CDS 35.0%
GTTAAAGCTCCGTAAAGAAT+TGG + chr7_4:38198446-38198465 None:intergenic 35.0%
!! TAACTTGTTAAAAGGGGTCT+AGG + chr7_4:38198473-38198492 None:intergenic 35.0%
GGTTTAACCAATTGATCATC+TGG - chr7_4:38198672-38198691 Msa1152500:intron 35.0%
TAACCAATTGATCATCTGGT+TGG - chr7_4:38198676-38198695 Msa1152500:intron 35.0%
AAACCAACCAGATGATCAAT+TGG + chr7_4:38198682-38198701 None:intergenic 35.0%
TAGCACCTCTTGAAAATTCT+TGG + chr7_4:38198720-38198739 None:intergenic 35.0%
!! GAAGATTTTGAAAGGAAGCA+TGG + chr7_4:38198829-38198848 None:intergenic 35.0%
GCAATTCATCCTTGAATGAT+TGG - chr7_4:38198911-38198930 Msa1152500:intron 35.0%
!! ATCCTTGAATGATTGGTCTA+GGG - chr7_4:38198918-38198937 Msa1152500:intron 35.0%
GGACCATAGCTAATGAAATA+AGG - chr7_4:38198965-38198984 Msa1152500:intron 35.0%
AGGAGTGGATCGAATATAAA+AGG - chr7_4:38199090-38199109 Msa1152500:intron 35.0%
!! TTATTTTGTATGGTCCTTCG+TGG - chr7_4:38199113-38199132 Msa1152500:intron 35.0%
AGGAAATATGAGAAGGCAAA+GGG + chr7_4:38199308-38199327 None:intergenic 35.0%
AAGGAAATATGAGAAGGCAA+AGG + chr7_4:38199309-38199328 None:intergenic 35.0%
! TATTACAAGGCGTTATAGCA+AGG + chr7_4:38199328-38199347 None:intergenic 35.0%
ACGCCTTGTAATATCAAGTT+TGG - chr7_4:38199335-38199354 Msa1152500:five_prime_UTR 35.0%
CGCCTTGTAATATCAAGTTT+GGG - chr7_4:38199336-38199355 Msa1152500:five_prime_UTR 35.0%
GCCTTGTAATATCAAGTTTG+GGG - chr7_4:38199337-38199356 Msa1152500:five_prime_UTR 35.0%
CCTTGTAATATCAAGTTTGG+GGG - chr7_4:38199338-38199357 Msa1152500:five_prime_UTR 35.0%
TTCCCTTCTGACTTTGTGTT+TGG - chr7_4:38196102-38196121 Msa1152500:CDS 40.0%
CACCAAACACAAAGTCAGAA+GGG + chr7_4:38196107-38196126 None:intergenic 40.0%
ACACCAAACACAAAGTCAGA+AGG + chr7_4:38196108-38196127 None:intergenic 40.0%
GACAATACCATTTCCACCAT+GGG + chr7_4:38196518-38196537 None:intergenic 40.0%
CCTCGAAGACAGATGTAAAA+TGG + chr7_4:38196934-38196953 None:intergenic 40.0%
! CCATTTTACATCTGTCTTCG+AGG - chr7_4:38196931-38196950 Msa1152500:CDS 40.0%
! TCTTCGAGGGAATTTGAAGT+CGG - chr7_4:38196945-38196964 Msa1152500:CDS 40.0%
AAAGGACCCATCAATCCTAA+AGG - chr7_4:38197165-38197184 Msa1152500:intron 40.0%
TACTCATCCTCAAGTGATTG+TGG + chr7_4:38197349-38197368 None:intergenic 40.0%
CAATCACTTGAGGATGAGTA+TGG - chr7_4:38197349-38197368 Msa1152500:CDS 40.0%
AATATTGACCTCATTCACCG+TGG + chr7_4:38197592-38197611 None:intergenic 40.0%
!! CTTTCTAGCTAACTGCTCAA+GGG - chr7_4:38197668-38197687 Msa1152500:CDS 40.0%
!! TTTCTAGCTAACTGCTCAAG+GGG - chr7_4:38197669-38197688 Msa1152500:CDS 40.0%
GATTCCTTTACTGTGAAGGA+AGG + chr7_4:38198251-38198270 None:intergenic 40.0%
AATCTCTATCCTCCATGTTC+AGG + chr7_4:38198352-38198371 None:intergenic 40.0%
TTACATGCAAGATATGGCAG+TGG - chr7_4:38198370-38198389 Msa1152500:intron 40.0%
ATGGCAGTGCCAATTCTTTA+CGG - chr7_4:38198434-38198453 Msa1152500:intron 40.0%
GGTAACATAGTGCAGTAACA+AGG - chr7_4:38198617-38198636 Msa1152500:CDS 40.0%
GGAATGATCATGCCATATGT+TGG + chr7_4:38198808-38198827 None:intergenic 40.0%
!! CATCCTTGAATGATTGGTCT+AGG - chr7_4:38198917-38198936 Msa1152500:intron 40.0%
!! TTTTGACTCGTTGAAAGGAG+TGG - chr7_4:38199075-38199094 Msa1152500:intron 40.0%
TATTTCAAGCACATCCACGA+AGG + chr7_4:38199130-38199149 None:intergenic 40.0%
GATGTGCTTGAAATACTGAG+TGG - chr7_4:38199135-38199154 Msa1152500:CDS 40.0%
AACCTAAGCTCTCTGCTAAA+TGG - chr7_4:38199217-38199236 Msa1152500:CDS 40.0%
TACCATTTAGCAGAGAGCTT+AGG + chr7_4:38199222-38199241 None:intergenic 40.0%
GGAAATATGAGAAGGCAAAG+GGG + chr7_4:38199307-38199326 None:intergenic 40.0%
CCCCCAAACTTGATATTACA+AGG + chr7_4:38199341-38199360 None:intergenic 40.0%
! GAAGGTGCAGCAAATGAAGA+TGG - chr7_4:38196463-38196482 Msa1152500:intron 45.0%
ATGGCAGGAAACCAAGCATA+TGG - chr7_4:38196482-38196501 Msa1152500:intron 45.0%
TGGCAGGAAACCAAGCATAT+GGG - chr7_4:38196483-38196502 Msa1152500:intron 45.0%
!! GCAAAGGTATCCCATATGCT+TGG + chr7_4:38196496-38196515 None:intergenic 45.0%
ATATGGGATACCTTTGCCCA+TGG - chr7_4:38196499-38196518 Msa1152500:CDS 45.0%
GGACAATACCATTTCCACCA+TGG + chr7_4:38196519-38196538 None:intergenic 45.0%
GCGAATATGTACAAGGGTGA+CGG - chr7_4:38196633-38196652 Msa1152500:intron 45.0%
ATAGGCATCTAAGCCCATGT+TGG + chr7_4:38196855-38196874 None:intergenic 45.0%
! TTGATGGGTCCTTTACCATC+TGG + chr7_4:38197159-38197178 None:intergenic 45.0%
GGATCTACCACAATCACTTG+AGG - chr7_4:38197339-38197358 Msa1152500:CDS 45.0%
TCACTTGAGGATGAGTATGG+AGG - chr7_4:38197352-38197371 Msa1152500:CDS 45.0%
TTGAGGATGAGTATGGAGGA+TGG - chr7_4:38197356-38197375 Msa1152500:CDS 45.0%
TGAGGATGAGTATGGAGGAT+GGG - chr7_4:38197357-38197376 Msa1152500:CDS 45.0%
TTGGCGATCGAGTTAAGTAC+TGG - chr7_4:38197565-38197584 Msa1152500:CDS 45.0%
!! TCGAGTTAAGTACTGGACCA+CGG - chr7_4:38197572-38197591 Msa1152500:CDS 45.0%
GAGCAGTTAGCTAGAAAGGA+AGG + chr7_4:38197666-38197685 None:intergenic 45.0%
CCTTGAGCAGTTAGCTAGAA+AGG + chr7_4:38197670-38197689 None:intergenic 45.0%
!! CCTTTCTAGCTAACTGCTCA+AGG - chr7_4:38197667-38197686 Msa1152500:CDS 45.0%
CTTCAGCTGCAAGATTGTAC+AGG - chr7_4:38197745-38197764 Msa1152500:intron 45.0%
AAAGTGCAGGGTATGCAACA+TGG - chr7_4:38197891-38197910 Msa1152500:CDS 45.0%
GCTTCCTTCCTTCACAGTAA+AGG - chr7_4:38198244-38198263 Msa1152500:intron 45.0%
!! AGCCTTCGAGTTCATTTTGC+AGG - chr7_4:38198874-38198893 Msa1152500:intron 45.0%
AGCCTGCAAAATGAACTCGA+AGG + chr7_4:38198879-38198898 None:intergenic 45.0%
CACCCTAGACCAATCATTCA+AGG + chr7_4:38198923-38198942 None:intergenic 45.0%
GTGCAGCAAATGAAGATGGC+AGG - chr7_4:38196467-38196486 Msa1152500:intron 50.0%
! ACCTTTGCCCATGGTGGAAA+TGG - chr7_4:38196508-38196527 Msa1152500:CDS 50.0%
ACCATTTCCACCATGGGCAA+AGG + chr7_4:38196512-38196531 None:intergenic 50.0%
GACGGAGATATTGCATGCGA+TGG - chr7_4:38196651-38196670 Msa1152500:intron 50.0%
ACAAGACCTCGATTTCCTGC+AGG - chr7_4:38196811-38196830 Msa1152500:intron 50.0%
CATCTTCCTGCAGGAAATCG+AGG + chr7_4:38196820-38196839 None:intergenic 50.0%
TGAGTTCGACATCTTCCTGC+AGG + chr7_4:38196829-38196848 None:intergenic 50.0%
GCAGGAAGATGTCGAACTCA+TGG - chr7_4:38196829-38196848 Msa1152500:intron 50.0%
TGTCGAACTCATGGCCAACA+TGG - chr7_4:38196838-38196857 Msa1152500:intron 50.0%
GTCGAACTCATGGCCAACAT+GGG - chr7_4:38196839-38196858 Msa1152500:intron 50.0%
TCATGGTCGCGACTTATTCC+AGG - chr7_4:38196887-38196906 Msa1152500:CDS 50.0%
AAGGAAGGAGAACACCTCTG+AGG + chr7_4:38197651-38197670 None:intergenic 50.0%
AAGGGCCCAAGACTTCATGA+TGG - chr7_4:38197989-38198008 Msa1152500:intron 50.0%
AGGGCCCAAGACTTCATGAT+GGG - chr7_4:38197990-38198009 Msa1152500:intron 50.0%
CCACCCCATCATGAAGTCTT+GGG + chr7_4:38197997-38198016 None:intergenic 50.0%
ACCACCCCATCATGAAGTCT+TGG + chr7_4:38197998-38198017 None:intergenic 50.0%
CAATCCTGCAAGCCTGAACA+TGG - chr7_4:38198337-38198356 Msa1152500:intron 50.0%
TGGGATACCTTTGCCCATGG+TGG - chr7_4:38196502-38196521 Msa1152500:CDS 55.0%
GTACTGGACCACGGTGAATG+AGG - chr7_4:38197581-38197600 Msa1152500:CDS 55.0%
! GAAGGAGAACACCTCTGAGG+CGG + chr7_4:38197648-38197667 None:intergenic 55.0%
GAAGTCTTGGGCCCTTTGAG+TGG + chr7_4:38197985-38198004 None:intergenic 55.0%
GGGCCCAAGACTTCATGATG+GGG - chr7_4:38197991-38198010 Msa1152500:intron 55.0%
! CCCAAGACTTCATGATGGGG+TGG - chr7_4:38197994-38198013 Msa1152500:intron 55.0%
TCCTGCAAGCCTGAACATGG+AGG - chr7_4:38198340-38198359 Msa1152500:intron 55.0%
TCCTCCATGTTCAGGCTTGC+AGG + chr7_4:38198344-38198363 None:intergenic 55.0%
TTGGAATGGCACCGCCTCAG+AGG - chr7_4:38197634-38197653 Msa1152500:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 38195833 38199443 38195833 ID=Msa1152500;Name=Msa1152500
chr7_4 mRNA 38195833 38199443 38195833 ID=Msa1152500-mRNA-1;Parent=Msa1152500;Name=Msa1152500-mRNA-1;_AED=0.38;_eAED=0.38;_QI=158|0.90|0.91|1|0.90|0.91|12|108|497
chr7_4 exon 38195833 38196184 38195833 ID=Msa1152500-mRNA-1:exon:9181;Parent=Msa1152500-mRNA-1
chr7_4 exon 38196290 38196380 38196290 ID=Msa1152500-mRNA-1:exon:9180;Parent=Msa1152500-mRNA-1
chr7_4 exon 38196485 38196572 38196485 ID=Msa1152500-mRNA-1:exon:9179;Parent=Msa1152500-mRNA-1
chr7_4 exon 38196659 38196690 38196659 ID=Msa1152500-mRNA-1:exon:9178;Parent=Msa1152500-mRNA-1
chr7_4 exon 38196875 38197095 38196875 ID=Msa1152500-mRNA-1:exon:9177;Parent=Msa1152500-mRNA-1
chr7_4 exon 38197261 38197376 38197261 ID=Msa1152500-mRNA-1:exon:9176;Parent=Msa1152500-mRNA-1
chr7_4 exon 38197497 38197752 38197497 ID=Msa1152500-mRNA-1:exon:9175;Parent=Msa1152500-mRNA-1
chr7_4 exon 38197881 38197968 38197881 ID=Msa1152500-mRNA-1:exon:9174;Parent=Msa1152500-mRNA-1
chr7_4 exon 38198045 38198116 38198045 ID=Msa1152500-mRNA-1:exon:9173;Parent=Msa1152500-mRNA-1
chr7_4 exon 38198583 38198642 38198583 ID=Msa1152500-mRNA-1:exon:9172;Parent=Msa1152500-mRNA-1
chr7_4 exon 38198747 38198816 38198747 ID=Msa1152500-mRNA-1:exon:9171;Parent=Msa1152500-mRNA-1
chr7_4 exon 38199130 38199443 38199130 ID=Msa1152500-mRNA-1:exon:9170;Parent=Msa1152500-mRNA-1
chr7_4 five_prime_UTR 38199286 38199443 38199286 ID=Msa1152500-mRNA-1:five_prime_utr;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38199130 38199285 38199130 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38198747 38198816 38198747 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38198583 38198642 38198583 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38198045 38198116 38198045 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38197881 38197968 38197881 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38197497 38197752 38197497 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38197261 38197376 38197261 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38196875 38197095 38196875 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38196659 38196690 38196659 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38196485 38196572 38196485 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38196290 38196380 38196290 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 CDS 38195941 38196184 38195941 ID=Msa1152500-mRNA-1:cds;Parent=Msa1152500-mRNA-1
chr7_4 three_prime_UTR 38195833 38195940 38195833 ID=Msa1152500-mRNA-1:three_prime_utr;Parent=Msa1152500-mRNA-1
Gene Sequence

>Msa1152500

ATGAGTATGGCTTTGATCTTGAAGAATTTTTCTTTGACAGAATTATTAACTGCTGCAGCAGTGTTAGTAGTAATCCTTTTCCCTAGTGCTTATAGTTTGAACAAAGATGACTTCCCTTCTGACTTTGTGTTTGGTGTATCAACTTCAGCTTACCAATTTGAAGGTGCAGCAAATGAAGATGGCAGGAAACCAAGCATATGGGATACCTTTGCCCATGGTGGAAATGCGAATATGTACAAGGGTGACGGAGATATTGCATGCGATGGATATCACAAATACAAGGTCAATGGTAAAGGACCCATCAATCCTAAAGGACTACAATATTACAACAATCTCATAAATGAACTGATAAGCCACGGAATCCAAGCACATGTTACATTACATCATTGGGATCTACCACAATCACTTGAGGATGAGTATGGAGGATGGGTTAGCGAAAAAATTGTGAAAGATTTCACATCATATGCTGATGTGTGCTTCAAAGAATTTGGCGATCGAGTTAAGTACTGGACCACGGTGAATGAGGTCAATATTTATGCAATGTTTGGCTATGATATTGGAATGGCACCGCCTCAGAGGTGTTCTCCTTCCTTTCTAGCTAACTGCTCAAGGGGAAATTCTTCAACTGAGCCATATTTGGCAGCTCATCATATGTTGTTAGCACATGCTTCAGCTGCAAGATTGTACAGGAAGAAATATAAGGGTATGCAACATGGATTTATTGGGTTTAATCTTCTTACTTTTGGTTTTGTTCCACTTACAAATACTATTGAAGATATAATTGCCACTCAAAGGGCCCAAGACTTCATGATGGGGTGGGTTCTAAATCCATTAACATTTGGTGATTATCCTGATATAATGAAAAAGAATGTTGGATCAAGGCTTCCTTCCTTCACAGTAAAGGAATCAAATCTGATCAAGAACTCAATTGACTTCTTAGGAGTAAACTTTTACAACTTAATATATGTTCAGAACAATCCTGCAAGCCTGAACATGGAGGATAGAGATTACATGCAAGATATGGCAGTGGAAATTACAATCATGATAGAAAATGATACATCAATAGATGAGTTTCCGATTACAACCAAGAATTTTCAAGAGGTGCTATATTACTTGAAGAATGATTATGGAAATTTTCCAATTTACATACATGAAAATGGCTACAGAACACTTCGCAATTCATCCTTGAATGATTGGTCTAGGGTGAAGTACTTGCATAAATACATTGGGACCATAGCTAATGAAATAAGGAGTGGATCGAATATAAAAGGTTATTTTGTATGGTCCTTCGTGGATGTGCTTGAAATACTGAGTGGATATGAAGAAAGTTTTGGCCTATACTACATAGATATGAATGATGCAAACTTGCAGAGACAACCTAAGCTCTCTGCTAAATGGTACTCAAATTTTCTGAAAAGGAAACCTATGGACTCAAAGATTATTATGGAATTTGAGAATGATTCCCCTTTGCCTTCTCATATTTCCTTGCTATAA

Protein sequence

>Msa1152500

MSMALILKNFSLTELLTAAAVLVVILFPSAYSLNKDDFPSDFVFGVSTSAYQFEGAANEDGRKPSIWDTFAHGGNANMYKGDGDIACDGYHKYKVNGKGPINPKGLQYYNNLINELISHGIQAHVTLHHWDLPQSLEDEYGGWVSEKIVKDFTSYADVCFKEFGDRVKYWTTVNEVNIYAMFGYDIGMAPPQRCSPSFLANCSRGNSSTEPYLAAHHMLLAHASAARLYRKKYKGMQHGFIGFNLLTFGFVPLTNTIEDIIATQRAQDFMMGWVLNPLTFGDYPDIMKKNVGSRLPSFTVKESNLIKNSIDFLGVNFYNLIYVQNNPASLNMEDRDYMQDMAVEITIMIENDTSIDEFPITTKNFQEVLYYLKNDYGNFPIYIHENGYRTLRNSSLNDWSRVKYLHKYIGTIANEIRSGSNIKGYFVWSFVDVLEILSGYEESFGLYYIDMNDANLQRQPKLSAKWYSNFLKRKPMDSKIIMEFENDSPLPSHISLL*