AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0605620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605620 MtrunA17_Chr4g0034981 97.731 617 14 0 1 617 1 617 0.0 1244
Msa0605620 MtrunA17_Chr5g0428941 28.169 355 247 4 235 587 136 484 4.39e-37 145
Msa0605620 MtrunA17_Chr1g0212691 25.424 354 254 4 235 585 104 450 7.86e-34 135
Msa0605620 MtrunA17_Chr6g0448821 28.037 321 227 4 266 585 39 356 1.25e-32 129
Msa0605620 MtrunA17_Chr4g0043941 26.032 315 193 6 275 586 42 319 1.59e-30 122
Msa0605620 MtrunA17_Chr2g0294671 27.402 281 167 5 349 595 215 492 6.82e-25 108
Msa0605620 MtrunA17_Chr2g0294671 24.153 236 167 5 271 504 244 469 2.99e-17 85.1
Msa0605620 MtrunA17_Chr2g0311181 29.457 258 168 7 347 602 71 316 3.21e-24 103
Msa0605620 MtrunA17_Chr8g0391881 24.719 267 196 2 298 562 111 374 4.67e-24 104
Msa0605620 MtrunA17_Chr2g0304101 28.448 232 160 5 361 590 82 309 2.54e-20 92.4
Msa0605620 MtrunA17_Chr5g0445491 23.746 299 186 6 274 566 187 449 6.76e-19 90.1
Msa0605620 MtrunA17_Chr5g0445491 23.529 272 198 6 198 462 182 450 8.18e-12 67.8
Msa0605620 MtrunA17_Chr5g0417641 28.511 235 160 5 357 587 64 294 5.89e-18 85.1
Msa0605620 MtrunA17_Chr7g0250261 27.670 206 142 5 384 585 77 279 5.02e-15 75.9
Msa0605620 MtrunA17_Chr0c29g0494001 27.670 206 142 5 384 585 77 279 5.02e-15 75.9
Msa0605620 MtrunA17_Chr3g0127891 21.340 403 253 13 210 564 83 469 8.54e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605620 AT2G21710.1 60.034 593 222 3 32 609 24 616 0.0 751
Msa0605620 AT2G21710.2 60.788 533 194 3 32 549 24 556 0.0 680
Msa0605620 AT2G21710.3 60.902 532 193 3 32 548 24 555 0.0 677
Msa0605620 AT4G02990.2 27.966 354 247 4 236 587 145 492 2.01e-35 140
Msa0605620 AT4G02990.1 27.966 354 247 4 236 587 145 492 2.01e-35 140
Msa0605620 AT2G44020.1 24.737 380 266 5 235 611 109 471 1.98e-33 134
Msa0605620 AT1G78930.1 29.577 355 240 7 234 585 227 574 2.35e-33 135
Msa0605620 AT1G78930.1 23.774 265 196 3 203 462 260 523 7.93e-15 78.2
Msa0605620 AT4G38160.4 27.070 314 185 8 279 586 46 321 6.46e-31 124
Msa0605620 AT4G38160.1 27.070 314 185 8 279 586 46 321 6.46e-31 124
Msa0605620 AT4G38160.2 27.070 314 185 8 279 586 46 321 1.28e-30 124
Msa0605620 AT4G38160.3 26.488 336 203 8 257 586 24 321 1.96e-30 123
Msa0605620 AT4G14605.2 24.206 252 183 5 336 585 222 467 5.69e-22 100
Msa0605620 AT4G14605.2 25.824 182 128 2 274 455 268 442 4.74e-14 75.5
Msa0605620 AT4G14605.1 24.206 252 183 5 336 585 222 467 5.69e-22 100
Msa0605620 AT4G14605.1 25.824 182 128 2 274 455 268 442 4.74e-14 75.5
Msa0605620 AT2G34620.1 27.600 250 172 6 344 591 54 296 9.71e-21 93.6
Msa0605620 AT5G55580.2 27.863 262 140 7 349 567 82 337 2.37e-20 94.0
Msa0605620 AT5G55580.2 24.468 282 203 6 198 472 69 347 8.33e-12 67.8
Msa0605620 AT5G55580.1 27.863 262 140 7 349 567 188 443 3.15e-20 94.7
Msa0605620 AT5G55580.1 25.177 282 201 5 198 472 175 453 5.33e-12 68.9
Msa0605620 AT2G36000.2 28.800 250 158 9 348 590 76 312 9.95e-19 88.2
Msa0605620 AT2G36000.1 28.800 250 158 9 348 590 76 312 1.10e-18 88.2
Msa0605620 AT2G03050.1 27.984 243 165 6 348 587 35 270 2.52e-17 83.2
Msa0605620 AT2G03050.2 27.984 243 165 6 348 587 36 271 2.95e-17 83.2
Msa0605620 AT5G54180.1 24.848 330 194 11 269 592 214 495 5.47e-17 84.7
Msa0605620 AT5G55580.3 29.688 192 122 7 349 533 188 373 4.46e-15 78.2
Msa0605620 AT5G55580.3 23.267 202 152 3 277 476 187 387 9.58e-13 70.9
Msa0605620 AT5G55580.3 23.295 176 128 4 276 446 221 394 6.81e-12 68.2
Msa0605620 AT3G46950.1 25.000 368 227 11 275 604 85 441 1.24e-14 77.0
Msa0605620 AT3G18870.1 26.471 204 143 5 385 585 69 268 2.91e-14 73.9
Msa0605620 AT1G79220.1 23.438 256 187 5 320 575 91 337 4.36e-13 72.0
Msa0605620 AT1G62110.1 24.047 341 220 11 266 585 112 434 6.65e-11 65.5

Find 163 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATAGCCATGTTATTTA+TGG 0.081418 4_2:+51557216 None:intergenic
GTTGATTACTTGAAAGAATT+TGG 0.111467 4_2:-51559509 Msa0605620:CDS
GTTAAGTATCTGTACTATTA+TGG 0.143456 4_2:-51559401 Msa0605620:CDS
CTTCATCATCACACCGAAAA+AGG 0.150541 4_2:+51561016 None:intergenic
TGACAGTAGATTGAAGTTTA+TGG 0.164656 4_2:+51558308 None:intergenic
GTTGATTATTTAGAGTTTAA+TGG 0.191787 4_2:-51559849 Msa0605620:CDS
GGTTTAGATGCGAAGGATTT+TGG 0.193478 4_2:-51559723 Msa0605620:CDS
GCACTGTCTAAGATGGTTTA+AGG 0.204913 4_2:-51557886 Msa0605620:intron
AATTACTTATACTGGTAATT+TGG 0.209026 4_2:-51560905 Msa0605620:CDS
TGTGCAGTTCTATCTGGATA+TGG 0.253475 4_2:-51559745 Msa0605620:CDS
CGGCATACGTCTTCGGCAAC+TGG 0.256271 4_2:-51558710 Msa0605620:CDS
TTGACGATGGTGGTGAGTTT+TGG 0.269650 4_2:+51561312 None:intergenic
AATTTGAGCGTTGATCTTTC+AGG 0.275922 4_2:+51557374 None:intergenic
TTCTGGGAATTGGTTGGTTT+TGG 0.280150 4_2:+51561265 None:intergenic
GCAATGCGGAAGGGTAAATT+TGG 0.282919 4_2:-51560928 Msa0605620:CDS
CTCAAGTTGTGCCACTTATC+AGG 0.283792 4_2:-51560765 Msa0605620:intron
TCGTTAAGGGAGAGTTTATT+GGG 0.287908 4_2:-51559935 Msa0605620:CDS
TTAAGTATCTGTACTATTAT+GGG 0.290110 4_2:-51559400 Msa0605620:CDS
ATTGGGGATGCAATGTTAAA+AGG 0.291192 4_2:-51559918 Msa0605620:CDS
TTACGTCTGGGCTGTAGATT+GGG 0.307230 4_2:+51558264 None:intergenic
TTTACGTCTGGGCTGTAGAT+TGG 0.307874 4_2:+51558263 None:intergenic
AAATTTGGAATTACTTATAC+TGG 0.310485 4_2:-51560913 Msa0605620:CDS
TATATCTTGCAAATTATCTT+AGG 0.317543 4_2:+51557265 None:intergenic
GGTAATTTGGTTGATAGGTT+GGG 0.326740 4_2:-51560892 Msa0605620:CDS
TGAAGAAGAGGGAATGATTA+TGG 0.327848 4_2:-51560998 Msa0605620:CDS
ATACTGGTAATTTGGTTGAT+AGG 0.329853 4_2:-51560897 Msa0605620:CDS
AAAGTCGAATTTGAATATTC+CGG 0.331125 4_2:+51560820 None:intergenic
GTATAGTGACCGAGAGCTTT+AGG 0.334085 4_2:+51559681 None:intergenic
ATTTAGAGTTTAATGGAGTC+AGG 0.343191 4_2:-51559842 Msa0605620:CDS
GGTTCGTGTGCAGTTCTATC+TGG 0.345234 4_2:-51559751 Msa0605620:CDS
TTGATTACTTGAAAGAATTT+GGG 0.348366 4_2:-51559508 Msa0605620:CDS
AGAATTTGGGCTTGAAAGTA+AGG 0.349816 4_2:-51559495 Msa0605620:CDS
TTCGTTAAGGGAGAGTTTAT+TGG 0.350638 4_2:-51559936 Msa0605620:CDS
TGTCTCTCGGCATACGTCTT+CGG 0.352299 4_2:-51558717 Msa0605620:CDS
TGCTAATTTGAAAAGATTGC+CGG 0.361400 4_2:-51560839 Msa0605620:CDS
ATTCCAAAGGTTATAGCTCT+TGG 0.363130 4_2:-51558799 Msa0605620:CDS
GAGGGAAACTTGAGTCTATA+AGG 0.365728 4_2:-51559986 Msa0605620:CDS
AGCTCTTGGACCTGAGCTCT+TGG 0.369738 4_2:-51558785 Msa0605620:CDS
AAAAGAACCCCACAGTTTCC+AGG 0.379101 4_2:-51561102 Msa0605620:CDS
TGCATTTCGGCCACAATTGA+TGG 0.381846 4_2:-51559456 Msa0605620:CDS
GGTGTTGTTCGTTTGGGTTT+TGG 0.381963 4_2:+51561286 None:intergenic
GCATTGTGTCTTCTGGGAAT+TGG 0.382568 4_2:+51561255 None:intergenic
TCTTACTGTATTAACTTCAT+TGG 0.384451 4_2:-51558171 Msa0605620:three_prime_UTR
GGTCCAAGAGCTATAACCTT+TGG 0.387818 4_2:+51558796 None:intergenic
CAGAAACTCAGTTGAGGAAA+AGG 0.390472 4_2:-51558064 Msa0605620:three_prime_UTR
GTCTCCGCAATTCTATTCAT+TGG 0.394501 4_2:+51557927 None:intergenic
ATAGCCTTTACAAGAAGATT+AGG 0.395908 4_2:-51559027 Msa0605620:CDS
TATTCCAAGACACAAGGTTC+TGG 0.399312 4_2:-51558422 Msa0605620:CDS
TTCTTCAGTGACTCCAGCCT+TGG 0.412260 4_2:+51558825 None:intergenic
TTGAAATCGGTGTTCGTTAA+GGG 0.416014 4_2:-51559948 Msa0605620:CDS
GTGCAGTTCTATCTGGATAT+GGG 0.421836 4_2:-51559744 Msa0605620:CDS
GTTGAAATCGGTGTTCGTTA+AGG 0.427423 4_2:-51559949 Msa0605620:CDS
TTGGTAAGTTGCTTGCATTT+CGG 0.429654 4_2:-51559469 Msa0605620:CDS
TCCACCAGAACCTTGTGTCT+TGG 0.429802 4_2:+51558418 None:intergenic
TGGAGTCAGGAGGGAATGGA+TGG 0.438671 4_2:-51559829 Msa0605620:CDS
GCTCTTGGACCTGAGCTCTT+GGG 0.443260 4_2:-51558784 Msa0605620:CDS
ACTTGCAATTTATCATCCGC+TGG 0.450052 4_2:-51558011 Msa0605620:three_prime_UTR
TTGCGCAAATAAGTATACTT+AGG 0.455182 4_2:+51558631 None:intergenic
TGGTAATTTGGTTGATAGGT+TGG 0.459689 4_2:-51560893 Msa0605620:CDS
GTAAAGTATTATTTGTCTCT+CGG 0.471517 4_2:-51558730 Msa0605620:CDS
TTACCTTGAGCCGTCTATCC+CGG 0.471958 4_2:-51557424 Msa0605620:three_prime_UTR
CAATGACATCGTGCAAAGTT+CGG 0.479808 4_2:+51558599 None:intergenic
ACTTCTTGCACTGTCTAAGA+TGG 0.480138 4_2:-51557893 Msa0605620:three_prime_UTR
AGCTCTCGGTCACTATACTT+TGG 0.485000 4_2:-51559676 Msa0605620:CDS
TTAATGGAGTCAGGAGGGAA+TGG 0.490995 4_2:-51559833 Msa0605620:CDS
AGGCTATAAGTGAGTAGAGT+GGG 0.491093 4_2:+51559043 None:intergenic
CGGTGTGATGATGAAGAAGA+GGG 0.493695 4_2:-51561009 Msa0605620:CDS
TATTGTATCTGAGCAGCATT+GGG 0.494643 4_2:+51558668 None:intergenic
GGGCTTGAAAGTAAGGATGT+TGG 0.497791 4_2:-51559488 Msa0605620:CDS
AGAGTTTAATGGAGTCAGGA+GGG 0.498246 4_2:-51559838 Msa0605620:CDS
CAATTGCTAAAGAGTGTGCT+TGG 0.499143 4_2:-51557972 Msa0605620:three_prime_UTR
GTTGGGTCTTGTAGTGAAGT+TGG 0.500264 4_2:+51561171 None:intergenic
TGTGTCTTCTGGGAATTGGT+TGG 0.500366 4_2:+51561259 None:intergenic
CCGTGTTGAGTGGTTGAAAT+CGG 0.501842 4_2:-51559961 Msa0605620:CDS
GGAAGTGAAGAACCCACATC+AGG 0.503162 4_2:+51561051 None:intergenic
TGAATCTGCTGATACTCAGC+CGG 0.506642 4_2:+51557405 None:intergenic
GACCTAGGGGTTCGAAATGA+CGG 0.512080 4_2:-51559091 Msa0605620:CDS
GAAGTTGTTATCTTACAGCT+TGG 0.512987 4_2:-51559784 Msa0605620:CDS
GTGCAAGAAGTACACGGGTC+AGG 0.513217 4_2:+51557905 None:intergenic
GCTGCGGAGTGACGGGGAGT+TGG 0.513594 4_2:-51559880 Msa0605620:CDS
TCAATCTACTGTCATGAAAG+AGG 0.513691 4_2:-51558299 Msa0605620:CDS
GAATCTGCTGATACTCAGCC+GGG 0.517649 4_2:+51557406 None:intergenic
TAACCATAATACCTGATAAG+TGG 0.519346 4_2:+51560754 None:intergenic
CATTCTCCTCATCCCATCTC+GGG 0.520803 4_2:+51559373 None:intergenic
GCATTCTCCTCATCCCATCT+CGG 0.523104 4_2:+51559372 None:intergenic
ACGATGTCATTGAGTTTCCC+AGG 0.527231 4_2:-51558588 Msa0605620:intron
AGCATAGTACATAAGCTTGA+AGG 0.532239 4_2:-51558757 Msa0605620:CDS
ATATTCTTGATGACCAAGGC+TGG 0.532993 4_2:-51558838 Msa0605620:CDS
GGATTACCCGAGATGGGATG+AGG 0.534187 4_2:-51559379 Msa0605620:CDS
CAGGCCTAATCTTCTTGTAA+AGG 0.535894 4_2:+51559023 None:intergenic
CGTTAACAGCGATGATATGT+CGG 0.537424 4_2:+51557450 None:intergenic
GAGAATGATATCTTGCAGCT+TGG 0.538041 4_2:+51557311 None:intergenic
ATCTCCAAGTGATCCTGATG+TGG 0.539338 4_2:-51561064 Msa0605620:CDS
AATTTGGTTGATAGGTTGGG+TGG 0.539654 4_2:-51560889 Msa0605620:CDS
ATGCTGCATCCCAAGAGCTC+AGG 0.539681 4_2:+51558775 None:intergenic
ACCTAGGGGTTCGAAATGAC+GGG 0.539793 4_2:-51559090 Msa0605620:CDS
GATGGTTGGGAATTAACAAA+TGG 0.545838 4_2:+51561414 None:intergenic
GAACCCACATCAGGATCACT+TGG 0.546534 4_2:+51561060 None:intergenic
TATTATGGGATTACCCGAGA+TGG 0.548665 4_2:-51559386 Msa0605620:CDS
TCGTAGGAAGGTTACTGAAG+AGG 0.548898 4_2:-51560962 Msa0605620:CDS
GGCATACGTCTTCGGCAACT+GGG 0.551380 4_2:-51558709 Msa0605620:CDS
ATATTGTATCTGAGCAGCAT+TGG 0.552053 4_2:+51558667 None:intergenic
AGCTATTGAGATTCGTAGGA+AGG 0.552352 4_2:-51560974 Msa0605620:CDS
GAGTCATTTAACACCCGCCT+TGG 0.552566 4_2:+51558109 None:intergenic
ATGCTGCACGCCATCAATTG+TGG 0.553984 4_2:+51559446 None:intergenic
TCGGTGTGATGATGAAGAAG+AGG 0.554684 4_2:-51561010 Msa0605620:CDS
TCCAAGACACAAGGTTCTGG+TGG 0.555314 4_2:-51558419 Msa0605620:CDS
TGTGGATAGAAGAATGAGGA+AGG 0.560659 4_2:+51561346 None:intergenic
CTTGCAATTTATCATCCGCT+GGG 0.560833 4_2:-51558010 Msa0605620:three_prime_UTR
CGTTAAGGGAGAGTTTATTG+GGG 0.561027 4_2:-51559934 Msa0605620:CDS
ATCATAACTGTTCTTCTCCA+AGG 0.561726 4_2:-51558126 Msa0605620:three_prime_UTR
TAGAGTTTAATGGAGTCAGG+AGG 0.565616 4_2:-51559839 Msa0605620:CDS
ATTATGGGATTACCCGAGAT+GGG 0.565768 4_2:-51559385 Msa0605620:CDS
GGATATGGGTTTAGATGCGA+AGG 0.566566 4_2:-51559730 Msa0605620:CDS
TAGTGAAGTTGGTGAAGGAT+TGG 0.570435 4_2:+51561182 None:intergenic
TGGAAGCTATTGAGATTCGT+AGG 0.571096 4_2:-51560978 Msa0605620:CDS
TACTTATTTGCGCAAAACCA+TGG 0.571905 4_2:-51558623 Msa0605620:CDS
AAGGCTATAAGTGAGTAGAG+TGG 0.574897 4_2:+51559042 None:intergenic
TTACAGCTTGGAAGAAGTGA+AGG 0.575349 4_2:-51559772 Msa0605620:CDS
TACGTCTGGGCTGTAGATTG+GGG 0.575774 4_2:+51558265 None:intergenic
TAAATTGAACCTGGAAACTG+TGG 0.577201 4_2:+51561093 None:intergenic
TAACTGTTCTTCTCCAAGGC+GGG 0.582270 4_2:-51558122 Msa0605620:three_prime_UTR
AATGCTTACAATTAAACCAA+TGG 0.584764 4_2:-51559354 Msa0605620:CDS
TAGTACAGATACTTAACAAG+AGG 0.586183 4_2:+51559407 None:intergenic
AAGTCAACACAAAAGACCAT+TGG 0.586719 4_2:+51559338 None:intergenic
GGAGATGACTATTGTGCCAA+AGG 0.586961 4_2:-51559315 Msa0605620:intron
GATTGAGCGTAAATTGAACC+TGG 0.592608 4_2:+51561084 None:intergenic
TGGAATAATTCGACCCTCGA+GGG 0.595008 4_2:+51558438 None:intergenic
GGGGATGCAATGTTAAAAGG+TGG 0.598215 4_2:-51559915 Msa0605620:CDS
CCGATTTCAACCACTCAACA+CGG 0.598988 4_2:+51559961 None:intergenic
AGGGTGTGGATAGAAGAATG+AGG 0.600685 4_2:+51561342 None:intergenic
TTACAAGAAGATTAGGCCTG+TGG 0.602463 4_2:-51559020 Msa0605620:intron
CAGCCGGGATAGACGGCTCA+AGG 0.602682 4_2:+51557421 None:intergenic
GGATGGGTTATGTTGTGAGT+CGG 0.603970 4_2:-51559812 Msa0605620:CDS
CGTGCAGCATTGAAGAACAA+TGG 0.604478 4_2:-51559433 Msa0605620:CDS
TCTCCAAGTGATCCTGATGT+GGG 0.605585 4_2:-51561063 Msa0605620:CDS
GGAGTCAGGAGGGAATGGAT+GGG 0.605621 4_2:-51559828 Msa0605620:CDS
CACTGAAGAAAATATTCCAA+AGG 0.608783 4_2:-51558812 Msa0605620:CDS
GCTGCAAGATATCATTCTCA+AGG 0.609933 4_2:-51557307 Msa0605620:three_prime_UTR
TAGACAGTGCAAGAAGTACA+CGG 0.614958 4_2:+51557899 None:intergenic
TGATACTCAGCCGGGATAGA+CGG 0.615627 4_2:+51557414 None:intergenic
ATCGTGCAAAGTTCGGACCA+TGG 0.622950 4_2:+51558606 None:intergenic
TTTAAAGAAGCAATGCGGAA+GGG 0.624488 4_2:-51560937 Msa0605620:CDS
AAAATGAGCTTAGCTATCTG+AGG 0.626607 4_2:+51560017 None:intergenic
AAGCTGTAAGATAACAACTT+CGG 0.628272 4_2:+51559786 None:intergenic
TCTTGTAGTGAAGTTGGTGA+AGG 0.630250 4_2:+51561177 None:intergenic
AAATTGAACCTGGAAACTGT+GGG 0.637519 4_2:+51561094 None:intergenic
CTATAAGGAACCGTGTTGAG+TGG 0.637525 4_2:-51559971 Msa0605620:CDS
TCGAATTATTCCAAGACACA+AGG 0.638216 4_2:-51558428 Msa0605620:CDS
TTGGAATAATTCGACCCTCG+AGG 0.648302 4_2:+51558437 None:intergenic
GTGCAGCAGAAACTCAGTTG+AGG 0.649477 4_2:-51558070 Msa0605620:three_prime_UTR
TTTGGAAGAAATGAGCCGAA+AGG 0.661203 4_2:-51559658 Msa0605620:intron
TGTGCCAATGAATAGAATTG+CGG 0.666692 4_2:-51557931 Msa0605620:three_prime_UTR
GGTCATATTCTTGATGACCA+AGG 0.669719 4_2:-51558842 Msa0605620:CDS
AGATGAAGAATTTAACAACA+TGG 0.681193 4_2:-51558353 Msa0605620:CDS
TCCCGTCATTTCGAACCCCT+AGG 0.681388 4_2:+51559089 None:intergenic
AATACAGTAAGATTAATATG+CGG 0.681460 4_2:+51558182 None:intergenic
AGACAGTGCAAGAAGTACAC+GGG 0.687306 4_2:+51557900 None:intergenic
ATAACTGTTCTTCTCCAAGG+CGG 0.694901 4_2:-51558123 Msa0605620:three_prime_UTR
TATCTTCACAAGTGACCCAG+CGG 0.704700 4_2:+51557995 None:intergenic
TTCATTGGCACATTCCACAG+TGG 0.731153 4_2:+51557942 None:intergenic
AATTGAACCTGGAAACTGTG+GGG 0.731440 4_2:+51561095 None:intergenic
TGCTTGGAAACATGCCACTG+TGG 0.736217 4_2:-51557956 Msa0605620:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCGACTTTTAATTTAA+GGG - chr4_2:51557793-51557812 Msa0605620:intron 15.0%
!!! TAATTTTTGACAAACTTTAT+AGG - chr4_2:51558972-51558991 Msa0605620:intron 15.0%
!!! AATTTTTGACAAACTTTATA+GGG - chr4_2:51558973-51558992 Msa0605620:intron 15.0%
!! TAAAAAAATTTACATACCTT+TGG + chr4_2:51559306-51559325 None:intergenic 15.0%
!! TTCATAAATAAAATTTCCAA+TGG - chr4_2:51559412-51559431 Msa0605620:CDS 15.0%
!!! TTTTAAAAATTGTGTATCTA+TGG + chr4_2:51560057-51560076 None:intergenic 15.0%
!!! AAGTTTCATTTTTGTTTAAT+AGG + chr4_2:51560575-51560594 None:intergenic 15.0%
!!! ATTTTAATCCATAAATAACA+TGG - chr4_2:51561378-51561397 Msa0605620:CDS 15.0%
!!! AAATTTGGAATTACTTATAC+TGG - chr4_2:51557689-51557708 Msa0605620:intron 20.0%
!! AATTACTTATACTGGTAATT+TGG - chr4_2:51557697-51557716 Msa0605620:intron 20.0%
!!! CAAATTCGACTTTTAATTTA+AGG - chr4_2:51557792-51557811 Msa0605620:intron 20.0%
!!! GTTGATTATTTAGAGTTTAA+TGG - chr4_2:51558753-51558772 Msa0605620:CDS 20.0%
!! TCAAAAATTAATGTACCTTT+CGG + chr4_2:51558962-51558981 None:intergenic 20.0%
!! TTGATTACTTGAAAGAATTT+GGG - chr4_2:51559094-51559113 Msa0605620:CDS 20.0%
!! TTAAGTATCTGTACTATTAT+GGG - chr4_2:51559202-51559221 Msa0605620:intron 20.0%
!!! TGTTACATATTTTATCATGA+AGG - chr4_2:51559474-51559493 Msa0605620:CDS 20.0%
!!! ATTTAAAGTTGAATATGCAA+TGG + chr4_2:51560106-51560125 None:intergenic 20.0%
!! AATACAGTAAGATTAATATG+CGG + chr4_2:51560423-51560442 None:intergenic 20.0%
!! TATATCTTGCAAATTATCTT+AGG + chr4_2:51561340-51561359 None:intergenic 20.0%
!!! AGTTTAATTTTTTCTTCGTG+AGG + chr4_2:51557458-51557477 None:intergenic 25.0%
! AAAGTCGAATTTGAATATTC+CGG + chr4_2:51557785-51557804 None:intergenic 25.0%
! TTATGAATTGAGATTAGTGT+TGG - chr4_2:51557868-51557887 Msa0605620:intron 25.0%
! AGAATTATTTGAATGTAACC+AGG - chr4_2:51557967-51557986 Msa0605620:three_prime_UTR 25.0%
! CAAAATATGCACTGAAAATT+TGG + chr4_2:51558220-51558239 None:intergenic 25.0%
! TTTAGGAAAATCAAAAACCA+TGG + chr4_2:51558907-51558926 None:intergenic 25.0%
! ATGCAACAATTGTAAATTTC+AGG - chr4_2:51559071-51559090 Msa0605620:CDS 25.0%
! GTTGATTACTTGAAAGAATT+TGG - chr4_2:51559093-51559112 Msa0605620:CDS 25.0%
! GTTAAGTATCTGTACTATTA+TGG - chr4_2:51559201-51559220 Msa0605620:intron 25.0%
! AATGCTTACAATTAAACCAA+TGG - chr4_2:51559248-51559267 Msa0605620:intron 25.0%
!! ATTGTCAGTATTTTATCATC+AGG + chr4_2:51559452-51559471 None:intergenic 25.0%
!! AATGGTAACAAATTTTGTAG+CGG + chr4_2:51559625-51559644 None:intergenic 25.0%
! GCTTCAGAAAAATTACTTAA+TGG + chr4_2:51559643-51559662 None:intergenic 25.0%
!! GTAAAGTATTATTTGTCTCT+CGG - chr4_2:51559872-51559891 Msa0605620:CDS 25.0%
! TCTAAATATCATTGATACCT+GGG + chr4_2:51560034-51560053 None:intergenic 25.0%
! AGATGAAGAATTTAACAACA+TGG - chr4_2:51560249-51560268 Msa0605620:intron 25.0%
! TCTTACTGTATTAACTTCAT+TGG - chr4_2:51560431-51560450 Msa0605620:intron 25.0%
!!! ATTTTTGTTTAATAGGACAG+AGG + chr4_2:51560568-51560587 None:intergenic 25.0%
!!! TTTTTGTGTTGTTGATGGTT+GGG + chr4_2:51557204-51557223 None:intergenic 30.0%
!!! TTTTTTGTGTTGTTGATGGT+TGG + chr4_2:51557205-51557224 None:intergenic 30.0%
!!! AGCATTTTTTGTGTTGTTGA+TGG + chr4_2:51557209-51557228 None:intergenic 30.0%
!!! TGTTCGTGTTTTTTTGTGTA+AGG + chr4_2:51557400-51557419 None:intergenic 30.0%
!! AGGTTTTTAAAGAAGCAATG+CGG - chr4_2:51557660-51557679 Msa0605620:intron 30.0%
ATACTGGTAATTTGGTTGAT+AGG - chr4_2:51557705-51557724 Msa0605620:intron 30.0%
TGCTAATTTGAAAAGATTGC+CGG - chr4_2:51557763-51557782 Msa0605620:intron 30.0%
TAACCATAATACCTGATAAG+TGG + chr4_2:51557851-51557870 None:intergenic 30.0%
ACATCTTTGATTAGAGTTGT+CGG - chr4_2:51558014-51558033 Msa0605620:three_prime_UTR 30.0%
CATTTCTTCAATTCTCTAGA+TGG - chr4_2:51558538-51558557 Msa0605620:intron 30.0%
! ATTTAGAGTTTAATGGAGTC+AGG - chr4_2:51558760-51558779 Msa0605620:CDS 30.0%
AAGCTGTAAGATAACAACTT+CGG + chr4_2:51558819-51558838 None:intergenic 30.0%
!! TTTGATTTTCCTAAAGCTCT+CGG - chr4_2:51558912-51558931 Msa0605620:intron 30.0%
TAGTACAGATACTTAACAAG+AGG + chr4_2:51559198-51559217 None:intergenic 30.0%
!!! CATGAAGGTAAAGTTTTTTC+AGG - chr4_2:51559489-51559508 Msa0605620:CDS 30.0%
!!! TAAAGTTTTTTCAGGACCTA+GGG - chr4_2:51559497-51559516 Msa0605620:CDS 30.0%
ATAGCCTTTACAAGAAGATT+AGG - chr4_2:51559575-51559594 Msa0605620:intron 30.0%
AAAGAAAAAAGACATACCAC+AGG + chr4_2:51559601-51559620 None:intergenic 30.0%
AATCAGAGTGATAAACTTTG+TGG + chr4_2:51559673-51559692 None:intergenic 30.0%
TTATAAACTGTCTGATCAAG+AGG - chr4_2:51559697-51559716 Msa0605620:CDS 30.0%
!! TGAGTTTGCTTGTTGTATAT+AGG - chr4_2:51559739-51559758 Msa0605620:CDS 30.0%
CACTGAAGAAAATATTCCAA+AGG - chr4_2:51559790-51559809 Msa0605620:CDS 30.0%
TTGCGCAAATAAGTATACTT+AGG + chr4_2:51559974-51559993 None:intergenic 30.0%
GTCTAAATATCATTGATACC+TGG + chr4_2:51560035-51560054 None:intergenic 30.0%
TGACAGTAGATTGAAGTTTA+TGG + chr4_2:51560297-51560316 None:intergenic 30.0%
!! TCAAAGTACCCCTTTTATTA+AGG - chr4_2:51560815-51560834 Msa0605620:CDS 30.0%
!! CAAAGTACCCCTTTTATTAA+GGG - chr4_2:51560816-51560835 Msa0605620:CDS 30.0%
! AGAGATAGCCATGTTATTTA+TGG + chr4_2:51561389-51561408 None:intergenic 30.0%
GATGGTTGGGAATTAACAAA+TGG + chr4_2:51557191-51557210 None:intergenic 35.0%
! GATTTTGCATTGTGTCTTCT+GGG + chr4_2:51557356-51557375 None:intergenic 35.0%
! TGATTTTGCATTGTGTCTTC+TGG + chr4_2:51557357-51557376 None:intergenic 35.0%
!!! TCGTGTTTTTTTGTGTAAGG+TGG + chr4_2:51557397-51557416 None:intergenic 35.0%
!!! TTTTTTCTTCGTGAGGTGTT+GGG + chr4_2:51557451-51557470 None:intergenic 35.0%
!!! ATTTTTTCTTCGTGAGGTGT+TGG + chr4_2:51557452-51557471 None:intergenic 35.0%
! TGGGGTTCTTTTTCTTACTA+AGG + chr4_2:51557492-51557511 None:intergenic 35.0%
AAATTGAACCTGGAAACTGT+GGG + chr4_2:51557511-51557530 None:intergenic 35.0%
TAAATTGAACCTGGAAACTG+TGG + chr4_2:51557512-51557531 None:intergenic 35.0%
TTCATCATCACACCGAAAAA+GGG + chr4_2:51557588-51557607 None:intergenic 35.0%
TGAAGAAGAGGGAATGATTA+TGG - chr4_2:51557604-51557623 Msa0605620:intron 35.0%
!! TTTTAAAGAAGCAATGCGGA+AGG - chr4_2:51557664-51557683 Msa0605620:intron 35.0%
TTTAAAGAAGCAATGCGGAA+GGG - chr4_2:51557665-51557684 Msa0605620:intron 35.0%
!! TGGTAATTTGGTTGATAGGT+TGG - chr4_2:51557709-51557728 Msa0605620:intron 35.0%
!! GGTAATTTGGTTGATAGGTT+GGG - chr4_2:51557710-51557729 Msa0605620:intron 35.0%
ACTCTAATCAAAGATGTGTC+TGG + chr4_2:51558011-51558030 None:intergenic 35.0%
!! TAGAGTTGTCGGTGTTAAAA+AGG - chr4_2:51558025-51558044 Msa0605620:three_prime_UTR 35.0%
ACACAACACAACAAGTAAGT+TGG + chr4_2:51558110-51558129 None:intergenic 35.0%
TGTTGTGTTGTGTGTATTGT+TGG - chr4_2:51558117-51558136 Msa0605620:three_prime_UTR 35.0%
GTTGTGTGTATTGTTGGAAA+TGG - chr4_2:51558123-51558142 Msa0605620:three_prime_UTR 35.0%
ATGAGTGAATGCCTCATTAT+TGG + chr4_2:51558159-51558178 None:intergenic 35.0%
! TAATGAGGCATTCACTCATT+CGG - chr4_2:51558160-51558179 Msa0605620:three_prime_UTR 35.0%
TCATTGGAATGAAATCTGGT+GGG - chr4_2:51558194-51558213 Msa0605620:three_prime_UTR 35.0%
! TTATTCGGTGAAACACATGT+GGG + chr4_2:51558346-51558365 None:intergenic 35.0%
AGTGAACACTTTCTCGAAAT+CGG + chr4_2:51558455-51558474 None:intergenic 35.0%
AAAATGAGCTTAGCTATCTG+AGG + chr4_2:51558588-51558607 None:intergenic 35.0%
!! AAGCTCATTTTGATGTCAAG+AGG - chr4_2:51558597-51558616 Msa0605620:CDS 35.0%
!! AGCTCATTTTGATGTCAAGA+GGG - chr4_2:51558598-51558617 Msa0605620:CDS 35.0%
! TTGAAATCGGTGTTCGTTAA+GGG - chr4_2:51558654-51558673 Msa0605620:CDS 35.0%
TTCGTTAAGGGAGAGTTTAT+TGG - chr4_2:51558666-51558685 Msa0605620:CDS 35.0%
TCGTTAAGGGAGAGTTTATT+GGG - chr4_2:51558667-51558686 Msa0605620:CDS 35.0%
ATTGGGGATGCAATGTTAAA+AGG - chr4_2:51558684-51558703 Msa0605620:CDS 35.0%
GAAGTTGTTATCTTACAGCT+TGG - chr4_2:51558818-51558837 Msa0605620:CDS 35.0%
AAGTATGAGAGAAGACAACA+AGG + chr4_2:51559021-51559040 None:intergenic 35.0%
AGAATTTGGGCTTGAAAGTA+AGG - chr4_2:51559107-51559126 Msa0605620:CDS 35.0%
TTGGTAAGTTGCTTGCATTT+CGG - chr4_2:51559133-51559152 Msa0605620:intron 35.0%
AAGTCAACACAAAAGACCAT+TGG + chr4_2:51559267-51559286 None:intergenic 35.0%
!!! AATGGTCTTTTGTGTTGACT+TGG - chr4_2:51559266-51559285 Msa0605620:intron 35.0%
GGAAACATAACAGAAACCAT+TGG + chr4_2:51559431-51559450 None:intergenic 35.0%
!!! GTAAAGTTTTTTCAGGACCT+AGG - chr4_2:51559496-51559515 Msa0605620:CDS 35.0%
!!! AAAGTTTTTTCAGGACCTAG+GGG - chr4_2:51559498-51559517 Msa0605620:CDS 35.0%
! GGGAAATTTTACAAGCATGT+TGG + chr4_2:51559542-51559561 None:intergenic 35.0%
! CTCAGCAGATTAGTTAATTG+AGG + chr4_2:51559723-51559742 None:intergenic 35.0%
ATTCCAAAGGTTATAGCTCT+TGG - chr4_2:51559803-51559822 Msa0605620:CDS 35.0%
AGCATAGTACATAAGCTTGA+AGG - chr4_2:51559845-51559864 Msa0605620:CDS 35.0%
TATTGTATCTGAGCAGCATT+GGG + chr4_2:51559937-51559956 None:intergenic 35.0%
ATATTGTATCTGAGCAGCAT+TGG + chr4_2:51559938-51559957 None:intergenic 35.0%
TACTTATTTGCGCAAAACCA+TGG - chr4_2:51559979-51559998 Msa0605620:CDS 35.0%
TCGAATTATTCCAAGACACA+AGG - chr4_2:51560174-51560193 Msa0605620:intron 35.0%
TCAATCTACTGTCATGAAAG+AGG - chr4_2:51560303-51560322 Msa0605620:intron 35.0%
! CGGTTTTTCTTTTTACGTCT+GGG + chr4_2:51560353-51560372 None:intergenic 35.0%
! TCGGTTTTTCTTTTTACGTC+TGG + chr4_2:51560354-51560373 None:intergenic 35.0%
GACGTAAAAAGAAAAACCGA+TGG - chr4_2:51560354-51560373 Msa0605620:intron 35.0%
ATCATAACTGTTCTTCTCCA+AGG - chr4_2:51560476-51560495 Msa0605620:intron 35.0%
TGTGCCAATGAATAGAATTG+CGG - chr4_2:51560671-51560690 Msa0605620:intron 35.0%
TGTTGCACTAATTTCTATCG+TGG - chr4_2:51560783-51560802 Msa0605620:CDS 35.0%
CAACAAGCCCTTAATAAAAG+GGG + chr4_2:51560826-51560845 None:intergenic 35.0%
CCAACAAGCCCTTAATAAAA+GGG + chr4_2:51560827-51560846 None:intergenic 35.0%
TCCAACAAGCCCTTAATAAA+AGG + chr4_2:51560828-51560847 None:intergenic 35.0%
!! TTATTAAGGGCTTGTTGGAT+TGG - chr4_2:51560829-51560848 Msa0605620:CDS 35.0%
ATAAGCTCTCACAAGTGATT+GGG + chr4_2:51560863-51560882 None:intergenic 35.0%
TGGAAAGTGGAAACAACTTA+TGG - chr4_2:51560882-51560901 Msa0605620:CDS 35.0%
!! AATTTGAGCGTTGATCTTTC+AGG + chr4_2:51561231-51561250 None:intergenic 35.0%
TGTGGATAGAAGAATGAGGA+AGG + chr4_2:51557259-51557278 None:intergenic 40.0%
!!! GGTGAGTTTTGGGTTTTTGA+GGG + chr4_2:51557282-51557301 None:intergenic 40.0%
!!! TGGTGAGTTTTGGGTTTTTG+AGG + chr4_2:51557283-51557302 None:intergenic 40.0%
!!! GGTTTTGGTGTTGTTCGTTT+GGG + chr4_2:51557325-51557344 None:intergenic 40.0%
!!! TGGTTTTGGTGTTGTTCGTT+TGG + chr4_2:51557326-51557345 None:intergenic 40.0%
!!! TTCTGGGAATTGGTTGGTTT+TGG + chr4_2:51557340-51557359 None:intergenic 40.0%
!! TAGTGAAGTTGGTGAAGGAT+TGG + chr4_2:51557423-51557442 None:intergenic 40.0%
!! TCTTGTAGTGAAGTTGGTGA+AGG + chr4_2:51557428-51557447 None:intergenic 40.0%
AATTGAACCTGGAAACTGTG+GGG + chr4_2:51557510-51557529 None:intergenic 40.0%
GATTGAGCGTAAATTGAACC+TGG + chr4_2:51557521-51557540 None:intergenic 40.0%
! CTCCATTGAGTACCCTTTTT+CGG - chr4_2:51557573-51557592 Msa0605620:intron 40.0%
CTTCATCATCACACCGAAAA+AGG + chr4_2:51557589-51557608 None:intergenic 40.0%
TGGAAGCTATTGAGATTCGT+AGG - chr4_2:51557624-51557643 Msa0605620:intron 40.0%
AGCTATTGAGATTCGTAGGA+AGG - chr4_2:51557628-51557647 Msa0605620:intron 40.0%
!! AATTTGGTTGATAGGTTGGG+TGG - chr4_2:51557713-51557732 Msa0605620:intron 40.0%
!! GTGCCACTTATCAGGTATTA+TGG - chr4_2:51557845-51557864 Msa0605620:intron 40.0%
ACCCATTGACACATTGACAT+CGG - chr4_2:51557928-51557947 Msa0605620:three_prime_UTR 40.0%
ACCGATGTCAATGTGTCAAT+GGG + chr4_2:51557932-51557951 None:intergenic 40.0%
TACCGATGTCAATGTGTCAA+TGG + chr4_2:51557933-51557952 None:intergenic 40.0%
GATTGCCATAGCCAATAATG+AGG - chr4_2:51558145-51558164 Msa0605620:three_prime_UTR 40.0%
! GAATGCCTCATTATTGGCTA+TGG + chr4_2:51558153-51558172 None:intergenic 40.0%
GTGGTCATTGGAATGAAATC+TGG - chr4_2:51558190-51558209 Msa0605620:three_prime_UTR 40.0%
GTCATTGGAATGAAATCTGG+TGG - chr4_2:51558193-51558212 Msa0605620:three_prime_UTR 40.0%
TGGGATTCATTTCGAAAGTG+TGG - chr4_2:51558318-51558337 Msa0605620:CDS 40.0%
! GGGATTCATTTCGAAAGTGT+GGG - chr4_2:51558319-51558338 Msa0605620:CDS 40.0%
! CTTATTCGGTGAAACACATG+TGG + chr4_2:51558347-51558366 None:intergenic 40.0%
CTAGCACTCACTCTCTTATT+CGG + chr4_2:51558361-51558380 None:intergenic 40.0%
GAGGGAAACTTGAGTCTATA+AGG - chr4_2:51558616-51558635 Msa0605620:CDS 40.0%
! GTTGAAATCGGTGTTCGTTA+AGG - chr4_2:51558653-51558672 Msa0605620:CDS 40.0%
CGTTAAGGGAGAGTTTATTG+GGG - chr4_2:51558668-51558687 Msa0605620:CDS 40.0%
! GTGGAGATAATGTTTTGCTG+CGG - chr4_2:51558706-51558725 Msa0605620:CDS 40.0%
TAGAGTTTAATGGAGTCAGG+AGG - chr4_2:51558763-51558782 Msa0605620:CDS 40.0%
AGAGTTTAATGGAGTCAGGA+GGG - chr4_2:51558764-51558783 Msa0605620:CDS 40.0%
TTACAGCTTGGAAGAAGTGA+AGG - chr4_2:51558830-51558849 Msa0605620:CDS 40.0%
TGTGCAGTTCTATCTGGATA+TGG - chr4_2:51558857-51558876 Msa0605620:intron 40.0%
GTGCAGTTCTATCTGGATAT+GGG - chr4_2:51558858-51558877 Msa0605620:intron 40.0%
! GGTTTAGATGCGAAGGATTT+TGG - chr4_2:51558879-51558898 Msa0605620:intron 40.0%
TTTGGAAGAAATGAGCCGAA+AGG - chr4_2:51558944-51558963 Msa0605620:intron 40.0%
TATTATGGGATTACCCGAGA+TGG - chr4_2:51559216-51559235 Msa0605620:intron 40.0%
ATTATGGGATTACCCGAGAT+GGG - chr4_2:51559217-51559236 Msa0605620:intron 40.0%
AGGCTATAAGTGAGTAGAGT+GGG + chr4_2:51559562-51559581 None:intergenic 40.0%
AAGGCTATAAGTGAGTAGAG+TGG + chr4_2:51559563-51559582 None:intergenic 40.0%
CAGGCCTAATCTTCTTGTAA+AGG + chr4_2:51559582-51559601 None:intergenic 40.0%
TTACAAGAAGATTAGGCCTG+TGG - chr4_2:51559582-51559601 Msa0605620:intron 40.0%
CAGAGTGATAAACTTTGTGG+TGG + chr4_2:51559670-51559689 None:intergenic 40.0%
! GGTCATATTCTTGATGACCA+AGG - chr4_2:51559760-51559779 Msa0605620:CDS 40.0%
! ATATTCTTGATGACCAAGGC+TGG - chr4_2:51559764-51559783 Msa0605620:CDS 40.0%
CAATGACATCGTGCAAAGTT+CGG + chr4_2:51560006-51560025 None:intergenic 40.0%
!! GCAATTCTCTTGCTGTTATC+AGG - chr4_2:51560128-51560147 Msa0605620:intron 40.0%
!! TTTTTCAGCTATTCCCTCGA+GGG - chr4_2:51560151-51560170 Msa0605620:intron 40.0%
TATTCCAAGACACAAGGTTC+TGG - chr4_2:51560180-51560199 Msa0605620:intron 40.0%
ATAACTGTTCTTCTCCAAGG+CGG - chr4_2:51560479-51560498 Msa0605620:intron 40.0%
CAGAAACTCAGTTGAGGAAA+AGG - chr4_2:51560538-51560557 Msa0605620:intron 40.0%
ACTTGCAATTTATCATCCGC+TGG - chr4_2:51560591-51560610 Msa0605620:intron 40.0%
CTTGCAATTTATCATCCGCT+GGG - chr4_2:51560592-51560611 Msa0605620:intron 40.0%
! CAATTGCTAAAGAGTGTGCT+TGG - chr4_2:51560630-51560649 Msa0605620:intron 40.0%
GTCTCCGCAATTCTATTCAT+TGG + chr4_2:51560678-51560697 None:intergenic 40.0%
! TAGACAGTGCAAGAAGTACA+CGG + chr4_2:51560706-51560725 None:intergenic 40.0%
ACTTCTTGCACTGTCTAAGA+TGG - chr4_2:51560709-51560728 Msa0605620:intron 40.0%
! GCACTGTCTAAGATGGTTTA+AGG - chr4_2:51560716-51560735 Msa0605620:intron 40.0%
! CCCTTTTATTAAGGGCTTGT+TGG - chr4_2:51560824-51560843 Msa0605620:CDS 40.0%
CATAAGCTCTCACAAGTGAT+TGG + chr4_2:51560864-51560883 None:intergenic 40.0%
CAATCACTTGTGAGAGCTTA+TGG - chr4_2:51560862-51560881 Msa0605620:CDS 40.0%
TTGTGAGAGCTTATGGAAAG+TGG - chr4_2:51560869-51560888 Msa0605620:CDS 40.0%
!!! TACGACTTTTTTCCCCTGAT+AGG - chr4_2:51561086-51561105 Msa0605620:CDS 40.0%
! TTTTCCCCTGATAGGAATTG+TGG - chr4_2:51561094-51561113 Msa0605620:CDS 40.0%
TCTTCCACAATTCCTATCAG+GGG + chr4_2:51561101-51561120 None:intergenic 40.0%
GTCTTCCACAATTCCTATCA+GGG + chr4_2:51561102-51561121 None:intergenic 40.0%
AGTCTTCCACAATTCCTATC+AGG + chr4_2:51561103-51561122 None:intergenic 40.0%
CGTTAACAGCGATGATATGT+CGG + chr4_2:51561155-51561174 None:intergenic 40.0%
GAGAATGATATCTTGCAGCT+TGG + chr4_2:51561294-51561313 None:intergenic 40.0%
GCTGCAAGATATCATTCTCA+AGG - chr4_2:51561295-51561314 Msa0605620:CDS 40.0%
AGGGTGTGGATAGAAGAATG+AGG + chr4_2:51557263-51557282 None:intergenic 45.0%
!!! GTTTTGGGTTTTTGAGGGTG+TGG + chr4_2:51557277-51557296 None:intergenic 45.0%
!! TGACGATGGTGGTGAGTTTT+GGG + chr4_2:51557292-51557311 None:intergenic 45.0%
!! TTGACGATGGTGGTGAGTTT+TGG + chr4_2:51557293-51557312 None:intergenic 45.0%
!!! GGTGTTGTTCGTTTGGGTTT+TGG + chr4_2:51557319-51557338 None:intergenic 45.0%
! TGTGTCTTCTGGGAATTGGT+TGG + chr4_2:51557346-51557365 None:intergenic 45.0%
! GCATTGTGTCTTCTGGGAAT+TGG + chr4_2:51557350-51557369 None:intergenic 45.0%
! GTTGGGTCTTGTAGTGAAGT+TGG + chr4_2:51557434-51557453 None:intergenic 45.0%
AAAAGAACCCCACAGTTTCC+AGG - chr4_2:51557500-51557519 Msa0605620:intron 45.0%
ATCTCCAAGTGATCCTGATG+TGG - chr4_2:51557538-51557557 Msa0605620:intron 45.0%
TCTCCAAGTGATCCTGATGT+GGG - chr4_2:51557539-51557558 Msa0605620:intron 45.0%
!! CGAAAAAGGGTACTCAATGG+AGG + chr4_2:51557575-51557594 None:intergenic 45.0%
!! CACCGAAAAAGGGTACTCAA+TGG + chr4_2:51557578-51557597 None:intergenic 45.0%
! TCGGTGTGATGATGAAGAAG+AGG - chr4_2:51557592-51557611 Msa0605620:intron 45.0%
! CGGTGTGATGATGAAGAAGA+GGG - chr4_2:51557593-51557612 Msa0605620:intron 45.0%
TCGTAGGAAGGTTACTGAAG+AGG - chr4_2:51557640-51557659 Msa0605620:intron 45.0%
GCAATGCGGAAGGGTAAATT+TGG - chr4_2:51557674-51557693 Msa0605620:intron 45.0%
!! CTCAAGTTGTGCCACTTATC+AGG - chr4_2:51557837-51557856 Msa0605620:intron 45.0%
TAACCAGGTGTGTGTTGTGT+CGG - chr4_2:51557982-51558001 Msa0605620:three_prime_UTR 45.0%
TCACTCATTCGGCACATATG+TGG - chr4_2:51558171-51558190 Msa0605620:three_prime_UTR 45.0%
TTCGGCACATATGTGGTCAT+TGG - chr4_2:51558178-51558197 Msa0605620:three_prime_UTR 45.0%
TGTGTCTCGTCACTTCATGT+GGG - chr4_2:51558299-51558318 Msa0605620:CDS 45.0%
CTATAAGGAACCGTGTTGAG+TGG - chr4_2:51558631-51558650 Msa0605620:CDS 45.0%
CCGATTTCAACCACTCAACA+CGG + chr4_2:51558644-51558663 None:intergenic 45.0%
CCGTGTTGAGTGGTTGAAAT+CGG - chr4_2:51558641-51558660 Msa0605620:CDS 45.0%
GGGGATGCAATGTTAAAAGG+TGG - chr4_2:51558687-51558706 Msa0605620:CDS 45.0%
! AATGTTTTGCTGCGGAGTGA+CGG - chr4_2:51558714-51558733 Msa0605620:CDS 45.0%
TTAATGGAGTCAGGAGGGAA+TGG - chr4_2:51558769-51558788 Msa0605620:CDS 45.0%
!! GGATGGGTTATGTTGTGAGT+CGG - chr4_2:51558790-51558809 Msa0605620:CDS 45.0%
GGATATGGGTTTAGATGCGA+AGG - chr4_2:51558872-51558891 Msa0605620:intron 45.0%
GTATAGTGACCGAGAGCTTT+AGG + chr4_2:51558924-51558943 None:intergenic 45.0%
AGCTCTCGGTCACTATACTT+TGG - chr4_2:51558926-51558945 Msa0605620:intron 45.0%
GGGCTTGAAAGTAAGGATGT+TGG - chr4_2:51559114-51559133 Msa0605620:intron 45.0%
TGCATTTCGGCCACAATTGA+TGG - chr4_2:51559146-51559165 Msa0605620:intron 45.0%
! CGTGCAGCATTGAAGAACAA+TGG - chr4_2:51559169-51559188 Msa0605620:intron 45.0%
GGAGATGACTATTGTGCCAA+AGG - chr4_2:51559287-51559306 Msa0605620:intron 45.0%
GGTCCAAGAGCTATAACCTT+TGG + chr4_2:51559809-51559828 None:intergenic 45.0%
ACGATGTCATTGAGTTTCCC+AGG - chr4_2:51560014-51560033 Msa0605620:CDS 45.0%
!! GTTTTTCAGCTATTCCCTCG+AGG - chr4_2:51560150-51560169 Msa0605620:intron 45.0%
TGGAATAATTCGACCCTCGA+GGG + chr4_2:51560167-51560186 None:intergenic 45.0%
TTGGAATAATTCGACCCTCG+AGG + chr4_2:51560168-51560187 None:intergenic 45.0%
TTACGTCTGGGCTGTAGATT+GGG + chr4_2:51560341-51560360 None:intergenic 45.0%
TTTACGTCTGGGCTGTAGAT+TGG + chr4_2:51560342-51560361 None:intergenic 45.0%
! AAGAAAAACCGATGGCTCTG+TGG - chr4_2:51560362-51560381 Msa0605620:intron 45.0%
! TCTGTTTTCCACAGAGCCAT+CGG + chr4_2:51560373-51560392 None:intergenic 45.0%
TAACTGTTCTTCTCCAAGGC+GGG - chr4_2:51560480-51560499 Msa0605620:intron 45.0%
TATCTTCACAAGTGACCCAG+CGG + chr4_2:51560610-51560629 None:intergenic 45.0%
TTCATTGGCACATTCCACAG+TGG + chr4_2:51560663-51560682 None:intergenic 45.0%
! AGACAGTGCAAGAAGTACAC+GGG + chr4_2:51560705-51560724 None:intergenic 45.0%
TGAATCTGCTGATACTCAGC+CGG + chr4_2:51561200-51561219 None:intergenic 45.0%
!! GTTTTGGCAGTTGACGATGG+TGG + chr4_2:51557303-51557322 None:intergenic 50.0%
!! TGGGTTTTGGCAGTTGACGA+TGG + chr4_2:51557306-51557325 None:intergenic 50.0%
GAACCCACATCAGGATCACT+TGG + chr4_2:51557545-51557564 None:intergenic 50.0%
GGAAGTGAAGAACCCACATC+AGG + chr4_2:51557554-51557573 None:intergenic 50.0%
GTGTGTCTCGTCACTTCATG+TGG - chr4_2:51558298-51558317 Msa0605620:CDS 50.0%
! ATGTTTTGCTGCGGAGTGAC+GGG - chr4_2:51558715-51558734 Msa0605620:CDS 50.0%
GGTTCGTGTGCAGTTCTATC+TGG - chr4_2:51558851-51558870 Msa0605620:intron 50.0%
!! TGCGAAGGATTTTGGCACCA+TGG - chr4_2:51558887-51558906 Msa0605620:intron 50.0%
ATGCTGCACGCCATCAATTG+TGG + chr4_2:51559159-51559178 None:intergenic 50.0%
CATTCTCCTCATCCCATCTC+GGG + chr4_2:51559232-51559251 None:intergenic 50.0%
GCATTCTCCTCATCCCATCT+CGG + chr4_2:51559233-51559252 None:intergenic 50.0%
GACCTAGGGGTTCGAAATGA+CGG - chr4_2:51559511-51559530 Msa0605620:CDS 50.0%
ACCTAGGGGTTCGAAATGAC+GGG - chr4_2:51559512-51559531 Msa0605620:CDS 50.0%
TTCTTCAGTGACTCCAGCCT+TGG + chr4_2:51559780-51559799 None:intergenic 50.0%
TGTCTCTCGGCATACGTCTT+CGG - chr4_2:51559885-51559904 Msa0605620:CDS 50.0%
ATCGTGCAAAGTTCGGACCA+TGG + chr4_2:51559999-51560018 None:intergenic 50.0%
! TCCAAGACACAAGGTTCTGG+TGG - chr4_2:51560183-51560202 Msa0605620:intron 50.0%
TCCACCAGAACCTTGTGTCT+TGG + chr4_2:51560187-51560206 None:intergenic 50.0%
TACGTCTGGGCTGTAGATTG+GGG + chr4_2:51560340-51560359 None:intergenic 50.0%
GAGTCATTTAACACCCGCCT+TGG + chr4_2:51560496-51560515 None:intergenic 50.0%
GTGCAGCAGAAACTCAGTTG+AGG - chr4_2:51560532-51560551 Msa0605620:intron 50.0%
TGCTTGGAAACATGCCACTG+TGG - chr4_2:51560646-51560665 Msa0605620:intron 50.0%
TTACCTTGAGCCGTCTATCC+CGG - chr4_2:51561178-51561197 Msa0605620:CDS 50.0%
TGATACTCAGCCGGGATAGA+CGG + chr4_2:51561191-51561210 None:intergenic 50.0%
GAATCTGCTGATACTCAGCC+GGG + chr4_2:51561199-51561218 None:intergenic 50.0%
TGTCCGACACAACACACACC+TGG + chr4_2:51557988-51558007 None:intergenic 55.0%
! TGTTTTGCTGCGGAGTGACG+GGG - chr4_2:51558716-51558735 Msa0605620:CDS 55.0%
TGGAGTCAGGAGGGAATGGA+TGG - chr4_2:51558773-51558792 Msa0605620:CDS 55.0%
GGAGTCAGGAGGGAATGGAT+GGG - chr4_2:51558774-51558793 Msa0605620:CDS 55.0%
GGATTACCCGAGATGGGATG+AGG - chr4_2:51559223-51559242 Msa0605620:intron 55.0%
TCCCGTCATTTCGAACCCCT+AGG + chr4_2:51559516-51559535 None:intergenic 55.0%
AGCTCTTGGACCTGAGCTCT+TGG - chr4_2:51559817-51559836 Msa0605620:CDS 55.0%
GCTCTTGGACCTGAGCTCTT+GGG - chr4_2:51559818-51559837 Msa0605620:CDS 55.0%
ATGCTGCATCCCAAGAGCTC+AGG + chr4_2:51559830-51559849 None:intergenic 55.0%
GGCATACGTCTTCGGCAACT+GGG - chr4_2:51559893-51559912 Msa0605620:CDS 55.0%
! GTGCAAGAAGTACACGGGTC+AGG + chr4_2:51560700-51560719 None:intergenic 55.0%
CGGCATACGTCTTCGGCAAC+TGG - chr4_2:51559892-51559911 Msa0605620:CDS 60.0%
CAGCCGGGATAGACGGCTCA+AGG + chr4_2:51561184-51561203 None:intergenic 65.0%
! GCTGCGGAGTGACGGGGAGT+TGG - chr4_2:51558722-51558741 Msa0605620:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 51557181 51561443 51557181 ID=Msa0605620;Name=Msa0605620
chr4_2 mRNA 51557181 51561443 51557181 ID=Msa0605620-mRNA-1;Parent=Msa0605620;Name=Msa0605620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=43|1|1|1|0.83|0.71|7|713|617
chr4_2 exon 51557181 51557516 51557181 ID=Msa0605620-mRNA-1:exon:12380;Parent=Msa0605620-mRNA-1
chr4_2 exon 51557887 51558474 51557887 ID=Msa0605620-mRNA-1:exon:12379;Parent=Msa0605620-mRNA-1
chr4_2 exon 51558589 51558863 51558589 ID=Msa0605620-mRNA-1:exon:12378;Parent=Msa0605620-mRNA-1
chr4_2 exon 51559021 51559128 51559021 ID=Msa0605620-mRNA-1:exon:12377;Parent=Msa0605620-mRNA-1
chr4_2 exon 51559316 51559531 51559316 ID=Msa0605620-mRNA-1:exon:12376;Parent=Msa0605620-mRNA-1
chr4_2 exon 51559659 51560067 51559659 ID=Msa0605620-mRNA-1:exon:12375;Parent=Msa0605620-mRNA-1
chr4_2 exon 51560766 51561443 51560766 ID=Msa0605620-mRNA-1:exon:12374;Parent=Msa0605620-mRNA-1
chr4_2 five_prime_UTR 51561401 51561443 51561401 ID=Msa0605620-mRNA-1:five_prime_utr;Parent=Msa0605620-mRNA-1
chr4_2 CDS 51560766 51561400 51560766 ID=Msa0605620-mRNA-1:cds;Parent=Msa0605620-mRNA-1
chr4_2 CDS 51559659 51560067 51559659 ID=Msa0605620-mRNA-1:cds;Parent=Msa0605620-mRNA-1
chr4_2 CDS 51559316 51559531 51559316 ID=Msa0605620-mRNA-1:cds;Parent=Msa0605620-mRNA-1
chr4_2 CDS 51559021 51559128 51559021 ID=Msa0605620-mRNA-1:cds;Parent=Msa0605620-mRNA-1
chr4_2 CDS 51558589 51558863 51558589 ID=Msa0605620-mRNA-1:cds;Parent=Msa0605620-mRNA-1
chr4_2 CDS 51558264 51558474 51558264 ID=Msa0605620-mRNA-1:cds;Parent=Msa0605620-mRNA-1
chr4_2 three_prime_UTR 51557887 51558263 51557887 ID=Msa0605620-mRNA-1:three_prime_utr;Parent=Msa0605620-mRNA-1
chr4_2 three_prime_UTR 51557181 51557516 51557181 ID=Msa0605620-mRNA-1:three_prime_utr;Parent=Msa0605620-mRNA-1
Gene Sequence

>Msa0605620

ATGCTTCTTTCATATCAAAAACACACTCTTTACCTTCCTCATTCTTCTATCCACACCCTCAAAAACCCAAAACTCACCACCATCGTCAACTGCCAAAACCCAAACGAACAACACCAAAACCAACCAATTCCCAGAAGACACAATGCAAAATCAACATCATTTCTCATTCACCACCTTACACAAAAAAACACGAACACCAATCCTTCACCAACTTCACTACAAGACCCAACACCTCACGAAGAAAAAATTAAACTTTTAGAACTTTCCTTAGTAAGAAAAAGAACCCCACAGTTTCCAGGTTCAATTTACGCTCAATCTCCAAGTGATCCTGATGTGGGTTCTTCACTTCCTCCATTGAGTACCCTTTTTCGGTGTGATGATGAAGAAGAGGGAATGATTATGGAAGCTATTGAGATTCGTAGGAAGGTTACTGAAGAGGTTTTTAAAGAAGCAATGCGGAAGGGTAAATTTGGAATTACTTATACTGGTAATTTGGTTGATAGGTTGGGTGGTTTTATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTGCCGGAATATTCAAATTCGACTTTTAATTTAAGGGCTAAAACTGTTATTGAAGATTCTCAAGTTGTGCCACTTATCAGATGGTTGAAGCATAATTCTCTATCGTATCCTCAGATAGCTAAGCTCATTTTGATGTCAAGAGGGAAACTTGAGTCTATAAGGAACCGTGTTGAGTGGTTGAAATCGGTGTTCGTTAAGGGAGAGTTTATTGGGGATGCAATGTTAAAAGGTGGAGATAATGTTTTGCTGCGGAGTGACGGGGAGTTGGATGAGATTGTTGATTATTTAGAGTTTAATGGAGTCAGGAGGGAATGGATGGGTTATGTTGTGAGTCGGTGTCCGAAGTTGTTATCTTACAGCTTGGAAGAAGTGAAGGTTCGTGTGCAGTTCTATCTGGATATGGGTTTAGATGCGAAGGATTTTGGCACCATGGTTTTTGATTTTCCTAAAGCTCTCGGTCACTATACTTTGGAAGAAATGAGCCGAAAGGTTGATTACTTGAAAGAATTTGGGCTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTCGGCCACAATTGATGGCGTGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAGGAGAATGCTTACAATTAAACCAATGGTCTTTTGTGTTGACTTGGAGATGACTATTGTGCCAAAGGTAAAGTTTTTTCAGGACCTAGGGGTTCGAAATGACGGGATTGCCAACATGCTTGTAAAATTTCCCACTCTACTCACTTATAGCCTTTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAAAATATTCCAAAGGTTATAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAGCTTGAAGGAAATGTAAAGTATTATTTGTCTCTCGGCATACGTCTTCGGCAACTGGGTGAAATGATTGCTGATTTCCCAATGCTGCTCAGATACAATATAGACGTTCTTCGTCCTAAGTATACTTATTTGCGCAAAACCATGGTCCGAACTTTGCACGATGTCATTGAGTTTCCCAGGTTTTTCAGCTATTCCCTCGAGGGTCGAATTATTCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATGTCAAGCTAAAATGCATGTTAGCTTGCACAGATGAAGAATTTAACAACATGGTCAAGAATATGATTAGAAAACGCCATAAACTTCAATCTACTGTCATGAAAGAGGATACTAAGCATCCCCAATCTACAGCCCAGACGTAA
Protein sequence

>Msa0605620

MLLSYQKHTLYLPHSSIHTLKNPKLTTIVNCQNPNEQHQNQPIPRRHNAKSTSFLIHHLTQKNTNTNPSPTSLQDPTPHEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLSTLFRCDDEEEGMIMEAIEIRRKVTEEVFKEAMRKGKFGITYTGNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPQIAKLILMSRGKLESIRNRVEWLKSVFVKGEFIGDAMLKGGDNVLLRSDGELDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLEEVKVRVQFYLDMGLDAKDFGTMVFDFPKALGHYTLEEMSRKVDYLKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFFQDLGVRNDGIANMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVIALGPELLGCSIVHKLEGNVKYYLSLGIRLRQLGEMIADFPMLLRYNIDVLRPKYTYLRKTMVRTLHDVIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNNMVKNMIRKRHKLQSTVMKEDTKHPQSTAQT*