AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550110 MtrunA17_Chr4g0034981 97.569 617 15 0 1 617 1 617 0.0 1243
Msa0550110 MtrunA17_Chr5g0428941 28.169 355 247 4 235 587 136 484 4.39e-37 145
Msa0550110 MtrunA17_Chr1g0212691 25.424 354 254 4 235 585 104 450 7.50e-34 135
Msa0550110 MtrunA17_Chr6g0448821 28.037 321 227 4 266 585 39 356 1.30e-32 129
Msa0550110 MtrunA17_Chr4g0043941 26.032 315 193 6 275 586 42 319 1.59e-30 122
Msa0550110 MtrunA17_Chr2g0294671 27.402 281 167 5 349 595 215 492 6.82e-25 108
Msa0550110 MtrunA17_Chr2g0294671 24.153 236 167 5 271 504 244 469 3.07e-17 85.1
Msa0550110 MtrunA17_Chr2g0311181 29.457 258 168 7 347 602 71 316 3.28e-24 103
Msa0550110 MtrunA17_Chr8g0391881 24.719 267 196 2 298 562 111 374 4.45e-24 104
Msa0550110 MtrunA17_Chr2g0304101 28.448 232 160 5 361 590 82 309 2.49e-20 92.4
Msa0550110 MtrunA17_Chr5g0445491 23.746 299 186 6 274 566 187 449 6.53e-19 90.1
Msa0550110 MtrunA17_Chr5g0445491 23.529 272 198 6 198 462 182 450 7.83e-12 68.2
Msa0550110 MtrunA17_Chr5g0417641 28.511 235 160 5 357 587 64 294 5.72e-18 85.1
Msa0550110 MtrunA17_Chr7g0250261 27.670 206 142 5 384 585 77 279 4.97e-15 75.9
Msa0550110 MtrunA17_Chr0c29g0494001 27.670 206 142 5 384 585 77 279 4.97e-15 75.9
Msa0550110 MtrunA17_Chr3g0127891 21.340 403 253 13 210 564 83 469 8.62e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550110 AT2G21710.1 60.034 593 222 3 32 609 24 616 0.0 751
Msa0550110 AT2G21710.2 60.788 533 194 3 32 549 24 556 0.0 680
Msa0550110 AT2G21710.3 60.902 532 193 3 32 548 24 555 0.0 678
Msa0550110 AT4G02990.2 27.966 354 247 4 236 587 145 492 1.97e-35 140
Msa0550110 AT4G02990.1 27.966 354 247 4 236 587 145 492 1.97e-35 140
Msa0550110 AT2G44020.1 24.737 380 266 5 235 611 109 471 1.80e-33 134
Msa0550110 AT1G78930.1 29.577 355 240 7 234 585 227 574 2.39e-33 135
Msa0550110 AT1G78930.1 23.774 265 196 3 203 462 260 523 8.00e-15 78.2
Msa0550110 AT4G38160.4 27.070 314 185 8 279 586 46 321 6.09e-31 124
Msa0550110 AT4G38160.1 27.070 314 185 8 279 586 46 321 6.09e-31 124
Msa0550110 AT4G38160.2 27.070 314 185 8 279 586 46 321 1.27e-30 124
Msa0550110 AT4G38160.3 26.488 336 203 8 257 586 24 321 2.02e-30 123
Msa0550110 AT4G14605.2 24.206 252 183 5 336 585 222 467 5.96e-22 100
Msa0550110 AT4G14605.2 25.824 182 128 2 274 455 268 442 4.83e-14 75.5
Msa0550110 AT4G14605.1 24.206 252 183 5 336 585 222 467 5.96e-22 100
Msa0550110 AT4G14605.1 25.824 182 128 2 274 455 268 442 4.83e-14 75.5
Msa0550110 AT2G34620.1 27.600 250 172 6 344 591 54 296 9.27e-21 93.6
Msa0550110 AT5G55580.2 27.863 262 140 7 349 567 82 337 3.01e-20 93.6
Msa0550110 AT5G55580.2 24.468 282 203 6 198 472 69 347 9.87e-12 67.8
Msa0550110 AT5G55580.1 27.863 262 140 7 349 567 188 443 3.18e-20 94.7
Msa0550110 AT5G55580.1 25.177 282 201 5 198 472 175 453 5.28e-12 68.9
Msa0550110 AT2G36000.2 28.800 250 158 9 348 590 76 312 1.04e-18 87.8
Msa0550110 AT2G36000.1 28.800 250 158 9 348 590 76 312 1.09e-18 88.2
Msa0550110 AT2G03050.1 27.984 243 165 6 348 587 35 270 2.47e-17 83.2
Msa0550110 AT2G03050.2 27.984 243 165 6 348 587 36 271 2.97e-17 83.2
Msa0550110 AT5G54180.1 24.848 330 194 11 269 592 214 495 5.47e-17 84.7
Msa0550110 AT5G55580.3 29.688 192 122 7 349 533 188 373 4.58e-15 78.2
Msa0550110 AT5G55580.3 23.267 202 152 3 277 476 187 387 9.49e-13 70.9
Msa0550110 AT5G55580.3 23.295 176 128 4 276 446 221 394 6.99e-12 68.2
Msa0550110 AT3G46950.1 25.000 368 227 11 275 604 85 441 1.26e-14 77.0
Msa0550110 AT3G18870.1 26.471 204 143 5 385 585 69 268 3.00e-14 73.9
Msa0550110 AT1G79220.1 23.438 256 187 5 320 575 91 337 4.40e-13 72.0
Msa0550110 AT1G62110.1 24.047 341 220 11 266 585 112 434 7.01e-11 65.5

Find 163 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATAGCCATGTTATTTA+TGG 0.081418 4_1:+45516550 None:intergenic
GTTGATTACTTGAAAGAATT+TGG 0.111467 4_1:-45518843 Msa0550110:CDS
GTTAAGTATCTGTACTATTA+TGG 0.143456 4_1:-45518735 Msa0550110:CDS
CTTCATCATCACACCGAAAA+AGG 0.150541 4_1:+45520350 None:intergenic
TGACAGTAGATTGAAGTTTA+TGG 0.164656 4_1:+45517642 None:intergenic
GTTGATTATTTAGAGTTTAA+TGG 0.191787 4_1:-45519183 Msa0550110:CDS
GGTTTAGATGCGAAGGATTT+TGG 0.193478 4_1:-45519057 Msa0550110:CDS
GCACTGTCTAAGATGGTTTA+AGG 0.204913 4_1:-45517220 Msa0550110:intron
AATTACTTATACTGGTAATT+TGG 0.209026 4_1:-45520239 Msa0550110:CDS
TGTGCAGTTCTATCTGGATA+TGG 0.253475 4_1:-45519079 Msa0550110:CDS
CGGCATACGTCTTCGGCAAC+TGG 0.256271 4_1:-45518044 Msa0550110:CDS
ACAATGCGGAAGGGTAAATT+TGG 0.265525 4_1:-45520262 Msa0550110:CDS
TTGACGATGGTGGTGAGTTT+TGG 0.269650 4_1:+45520646 None:intergenic
AATTTGAGCGTTGATCTTTC+AGG 0.275922 4_1:+45516708 None:intergenic
TTCTGGGAATTGGTTGGTTT+TGG 0.280150 4_1:+45520599 None:intergenic
CTCAAGTTGTGCCACTTATC+AGG 0.283792 4_1:-45520099 Msa0550110:intron
TCGTTAAGGGAGAGTTTATT+GGG 0.287908 4_1:-45519269 Msa0550110:CDS
TTAAGTATCTGTACTATTAT+GGG 0.290110 4_1:-45518734 Msa0550110:CDS
ATTGGGGATGCAATGTTAAA+AGG 0.291192 4_1:-45519252 Msa0550110:CDS
TTACGTCTGGGCTGTAGATT+GGG 0.307230 4_1:+45517598 None:intergenic
TTTACGTCTGGGCTGTAGAT+TGG 0.307874 4_1:+45517597 None:intergenic
AAATTTGGAATTACTTATAC+TGG 0.310485 4_1:-45520247 Msa0550110:CDS
TATATCTTGCAAATTATCTT+AGG 0.317543 4_1:+45516599 None:intergenic
GGTAATTTGGTTGATAGGTT+GGG 0.326740 4_1:-45520226 Msa0550110:CDS
TGAAGAAGAGGGAATGATTA+TGG 0.327848 4_1:-45520332 Msa0550110:CDS
ATACTGGTAATTTGGTTGAT+AGG 0.329853 4_1:-45520231 Msa0550110:CDS
AAAGTCGAATTTGAATATTC+CGG 0.331125 4_1:+45520154 None:intergenic
GTATAGTGACCGAGAGCTTT+AGG 0.334085 4_1:+45519015 None:intergenic
ATTTAGAGTTTAATGGAGTC+AGG 0.343191 4_1:-45519176 Msa0550110:CDS
GGTTCGTGTGCAGTTCTATC+TGG 0.345234 4_1:-45519085 Msa0550110:CDS
TTGATTACTTGAAAGAATTT+GGG 0.348366 4_1:-45518842 Msa0550110:CDS
AGAATTTGGGCTTGAAAGTA+AGG 0.349816 4_1:-45518829 Msa0550110:CDS
TTCGTTAAGGGAGAGTTTAT+TGG 0.350638 4_1:-45519270 Msa0550110:CDS
TGTCTCTCGGCATACGTCTT+CGG 0.352299 4_1:-45518051 Msa0550110:CDS
TGCTAATTTGAAAAGATTGC+CGG 0.361400 4_1:-45520173 Msa0550110:CDS
ATTCCAAAGGTTATAGCTCT+TGG 0.363130 4_1:-45518133 Msa0550110:CDS
GAGGGAAACTTGAGTCTATA+AGG 0.365728 4_1:-45519320 Msa0550110:CDS
AGCTCTTGGACCTGAGCTCT+TGG 0.369738 4_1:-45518119 Msa0550110:CDS
AAAAGAACCCCACAGTTTCC+AGG 0.379101 4_1:-45520436 Msa0550110:CDS
TGCATTTCGGCCACAATTGA+TGG 0.381846 4_1:-45518790 Msa0550110:CDS
GGTGTTGTTCGTTTGGGTTT+TGG 0.381963 4_1:+45520620 None:intergenic
GCATTGTGTCTTCTGGGAAT+TGG 0.382568 4_1:+45520589 None:intergenic
TCTTACTGTATTAACTTCAT+TGG 0.384451 4_1:-45517505 Msa0550110:three_prime_UTR
GGTCCAAGAGCTATAACCTT+TGG 0.387818 4_1:+45518130 None:intergenic
CAGAAACTCAGTTGAGGAAA+AGG 0.390472 4_1:-45517398 Msa0550110:three_prime_UTR
GTCTCCGCAATTCTATTCAT+TGG 0.394501 4_1:+45517261 None:intergenic
ATAGCCTTTACAAGAAGATT+AGG 0.395908 4_1:-45518361 Msa0550110:CDS
TATTCCAAGACACAAGGTTC+TGG 0.399312 4_1:-45517756 Msa0550110:CDS
TTCTTCAGTGACTCCAGCCT+TGG 0.412260 4_1:+45518159 None:intergenic
TTGAAATCGGTGTTCGTTAA+GGG 0.416014 4_1:-45519282 Msa0550110:CDS
GTGCAGTTCTATCTGGATAT+GGG 0.421836 4_1:-45519078 Msa0550110:CDS
GTTGAAATCGGTGTTCGTTA+AGG 0.427423 4_1:-45519283 Msa0550110:CDS
TTGGTAAGTTGCTTGCATTT+CGG 0.429654 4_1:-45518803 Msa0550110:CDS
TCCACCAGAACCTTGTGTCT+TGG 0.429802 4_1:+45517752 None:intergenic
TGGAGTCAGGAGGGAATGGA+TGG 0.438671 4_1:-45519163 Msa0550110:CDS
GCTCTTGGACCTGAGCTCTT+GGG 0.443260 4_1:-45518118 Msa0550110:CDS
ACTTGCAATTTATCATCCGC+TGG 0.450052 4_1:-45517345 Msa0550110:three_prime_UTR
TTGCGCAAATAAGTATACTT+AGG 0.455182 4_1:+45517965 None:intergenic
TGGTAATTTGGTTGATAGGT+TGG 0.459689 4_1:-45520227 Msa0550110:CDS
GTAAAGTATTATTTGTCTCT+CGG 0.471517 4_1:-45518064 Msa0550110:CDS
TTACCTTGAGCCGTCTATCC+CGG 0.471958 4_1:-45516758 Msa0550110:three_prime_UTR
CAATGACATCGTGCAAAGTT+CGG 0.479808 4_1:+45517933 None:intergenic
ACTTCTTGCACTGTCTAAGA+TGG 0.480138 4_1:-45517227 Msa0550110:three_prime_UTR
AGCTCTCGGTCACTATACTT+TGG 0.485000 4_1:-45519010 Msa0550110:CDS
TTAATGGAGTCAGGAGGGAA+TGG 0.490995 4_1:-45519167 Msa0550110:CDS
AGGCTATAAGTGAGTAGAGT+GGG 0.491093 4_1:+45518377 None:intergenic
CGGTGTGATGATGAAGAAGA+GGG 0.493695 4_1:-45520343 Msa0550110:CDS
TATTGTATCTGAGCAGCATT+GGG 0.494643 4_1:+45518002 None:intergenic
GGGCTTGAAAGTAAGGATGT+TGG 0.497791 4_1:-45518822 Msa0550110:CDS
AGAGTTTAATGGAGTCAGGA+GGG 0.498246 4_1:-45519172 Msa0550110:CDS
CAATTGCTAAAGAGTGTGCT+TGG 0.499143 4_1:-45517306 Msa0550110:three_prime_UTR
GTTGGGTCTTGTAGTGAAGT+TGG 0.500264 4_1:+45520505 None:intergenic
TGTGTCTTCTGGGAATTGGT+TGG 0.500366 4_1:+45520593 None:intergenic
CCGTGTTGAGTGGTTGAAAT+CGG 0.501842 4_1:-45519295 Msa0550110:CDS
GGAAGTGAAGAACCCACATC+AGG 0.503162 4_1:+45520385 None:intergenic
TGAATCTGCTGATACTCAGC+CGG 0.506642 4_1:+45516739 None:intergenic
GACCTAGGGGTTCGAAATGA+CGG 0.512080 4_1:-45518425 Msa0550110:CDS
GAAGTTGTTATCTTACAGCT+TGG 0.512987 4_1:-45519118 Msa0550110:CDS
GTGCAAGAAGTACACGGGTC+AGG 0.513217 4_1:+45517239 None:intergenic
GCTGCGGAGTGACGGGGAGT+TGG 0.513594 4_1:-45519214 Msa0550110:CDS
TCAATCTACTGTCATGAAAG+AGG 0.513691 4_1:-45517633 Msa0550110:CDS
GAATCTGCTGATACTCAGCC+GGG 0.517649 4_1:+45516740 None:intergenic
TAACCATAATACCTGATAAG+TGG 0.519346 4_1:+45520088 None:intergenic
CATTCTCCTCATCCCATCTC+GGG 0.520803 4_1:+45518707 None:intergenic
GCATTCTCCTCATCCCATCT+CGG 0.523104 4_1:+45518706 None:intergenic
ACGATGTCATTGAGTTTCCC+AGG 0.527231 4_1:-45517922 Msa0550110:intron
AGCATAGTACATAAGCTTGA+AGG 0.532239 4_1:-45518091 Msa0550110:CDS
ATATTCTTGATGACCAAGGC+TGG 0.532993 4_1:-45518172 Msa0550110:CDS
GGATTACCCGAGATGGGATG+AGG 0.534187 4_1:-45518713 Msa0550110:CDS
CAGGCCTAATCTTCTTGTAA+AGG 0.535894 4_1:+45518357 None:intergenic
CGTTAACAGCGATGATATGT+CGG 0.537424 4_1:+45516784 None:intergenic
GAGAATGATATCTTGCAGCT+TGG 0.538041 4_1:+45516645 None:intergenic
ATCTCCAAGTGATCCTGATG+TGG 0.539338 4_1:-45520398 Msa0550110:CDS
AATTTGGTTGATAGGTTGGG+TGG 0.539654 4_1:-45520223 Msa0550110:CDS
ATGCTGCATCCCAAGAGCTC+AGG 0.539681 4_1:+45518109 None:intergenic
ACCTAGGGGTTCGAAATGAC+GGG 0.539793 4_1:-45518424 Msa0550110:CDS
GATGGTTGGGAATTAACAAA+TGG 0.545838 4_1:+45520748 None:intergenic
GAACCCACATCAGGATCACT+TGG 0.546534 4_1:+45520394 None:intergenic
TATTATGGGATTACCCGAGA+TGG 0.548665 4_1:-45518720 Msa0550110:CDS
TCGTAGGAAGGTTACTGAAG+AGG 0.548898 4_1:-45520296 Msa0550110:CDS
GGCATACGTCTTCGGCAACT+GGG 0.551380 4_1:-45518043 Msa0550110:CDS
ATATTGTATCTGAGCAGCAT+TGG 0.552053 4_1:+45518001 None:intergenic
AGCTATTGAGATTCGTAGGA+AGG 0.552352 4_1:-45520308 Msa0550110:CDS
GAGTCATTTAACACCCGCCT+TGG 0.552566 4_1:+45517443 None:intergenic
ATGCTGCACGCCATCAATTG+TGG 0.553984 4_1:+45518780 None:intergenic
TCGGTGTGATGATGAAGAAG+AGG 0.554684 4_1:-45520344 Msa0550110:CDS
TCCAAGACACAAGGTTCTGG+TGG 0.555314 4_1:-45517753 Msa0550110:CDS
TGTGGATAGAAGAATGAGGA+AGG 0.560659 4_1:+45520680 None:intergenic
CTTGCAATTTATCATCCGCT+GGG 0.560833 4_1:-45517344 Msa0550110:three_prime_UTR
CGTTAAGGGAGAGTTTATTG+GGG 0.561027 4_1:-45519268 Msa0550110:CDS
ATCATAACTGTTCTTCTCCA+AGG 0.561726 4_1:-45517460 Msa0550110:three_prime_UTR
TAGAGTTTAATGGAGTCAGG+AGG 0.565616 4_1:-45519173 Msa0550110:CDS
ATTATGGGATTACCCGAGAT+GGG 0.565768 4_1:-45518719 Msa0550110:CDS
GGATATGGGTTTAGATGCGA+AGG 0.566566 4_1:-45519064 Msa0550110:CDS
TAGTGAAGTTGGTGAAGGAT+TGG 0.570435 4_1:+45520516 None:intergenic
TGGAAGCTATTGAGATTCGT+AGG 0.571096 4_1:-45520312 Msa0550110:CDS
TACTTATTTGCGCAAAACCA+TGG 0.571905 4_1:-45517957 Msa0550110:CDS
AAGGCTATAAGTGAGTAGAG+TGG 0.574897 4_1:+45518376 None:intergenic
TTACAGCTTGGAAGAAGTGA+AGG 0.575349 4_1:-45519106 Msa0550110:CDS
TACGTCTGGGCTGTAGATTG+GGG 0.575774 4_1:+45517599 None:intergenic
TAAATTGAACCTGGAAACTG+TGG 0.577201 4_1:+45520427 None:intergenic
TAACTGTTCTTCTCCAAGGC+GGG 0.582270 4_1:-45517456 Msa0550110:three_prime_UTR
AATGCTTACAATTAAACCAA+TGG 0.584764 4_1:-45518688 Msa0550110:CDS
TAGTACAGATACTTAACAAG+AGG 0.586183 4_1:+45518741 None:intergenic
AAGTCAACACAAAAGACCAT+TGG 0.586719 4_1:+45518672 None:intergenic
GGAGATGACTATTGTGCCAA+AGG 0.586961 4_1:-45518649 Msa0550110:intron
GATTGAGCGTAAATTGAACC+TGG 0.592608 4_1:+45520418 None:intergenic
TGGAATAATTCGACCCTCGA+GGG 0.595008 4_1:+45517772 None:intergenic
GGGGATGCAATGTTAAAAGG+TGG 0.598215 4_1:-45519249 Msa0550110:CDS
CCGATTTCAACCACTCAACA+CGG 0.598988 4_1:+45519295 None:intergenic
AGGGTGTGGATAGAAGAATG+AGG 0.600685 4_1:+45520676 None:intergenic
TTACAAGAAGATTAGGCCTG+TGG 0.602463 4_1:-45518354 Msa0550110:intron
CAGCCGGGATAGACGGCTCA+AGG 0.602682 4_1:+45516755 None:intergenic
GGATGGGTTATGTTGTGAGT+CGG 0.603970 4_1:-45519146 Msa0550110:CDS
CGTGCAGCATTGAAGAACAA+TGG 0.604478 4_1:-45518767 Msa0550110:CDS
TTTAAAGAAACAATGCGGAA+GGG 0.604723 4_1:-45520271 Msa0550110:CDS
TCTCCAAGTGATCCTGATGT+GGG 0.605585 4_1:-45520397 Msa0550110:CDS
GGAGTCAGGAGGGAATGGAT+GGG 0.605621 4_1:-45519162 Msa0550110:CDS
CACTGAAGAAAATATTCCAA+AGG 0.608783 4_1:-45518146 Msa0550110:CDS
GCTGCAAGATATCATTCTCA+AGG 0.609933 4_1:-45516641 Msa0550110:three_prime_UTR
TAGACAGTGCAAGAAGTACA+CGG 0.614958 4_1:+45517233 None:intergenic
TGATACTCAGCCGGGATAGA+CGG 0.615627 4_1:+45516748 None:intergenic
ATCGTGCAAAGTTCGGACCA+TGG 0.622950 4_1:+45517940 None:intergenic
AAAATGAGCTTAGCTATCTG+AGG 0.626607 4_1:+45519351 None:intergenic
AAGCTGTAAGATAACAACTT+CGG 0.628272 4_1:+45519120 None:intergenic
TCTTGTAGTGAAGTTGGTGA+AGG 0.630250 4_1:+45520511 None:intergenic
AAATTGAACCTGGAAACTGT+GGG 0.637519 4_1:+45520428 None:intergenic
CTATAAGGAACCGTGTTGAG+TGG 0.637525 4_1:-45519305 Msa0550110:CDS
TCGAATTATTCCAAGACACA+AGG 0.638216 4_1:-45517762 Msa0550110:CDS
TTGGAATAATTCGACCCTCG+AGG 0.648302 4_1:+45517771 None:intergenic
GTGCAGCAGAAACTCAGTTG+AGG 0.649477 4_1:-45517404 Msa0550110:three_prime_UTR
TTTGGAAGAAATGAGCCGAA+AGG 0.661203 4_1:-45518992 Msa0550110:intron
TGTGCCAATGAATAGAATTG+CGG 0.666692 4_1:-45517265 Msa0550110:three_prime_UTR
GGTCATATTCTTGATGACCA+AGG 0.669719 4_1:-45518176 Msa0550110:CDS
AGATGAAGAATTTAACAACA+TGG 0.681193 4_1:-45517687 Msa0550110:CDS
TCCCGTCATTTCGAACCCCT+AGG 0.681388 4_1:+45518423 None:intergenic
AATACAGTAAGATTAATATG+CGG 0.681460 4_1:+45517516 None:intergenic
AGACAGTGCAAGAAGTACAC+GGG 0.687306 4_1:+45517234 None:intergenic
ATAACTGTTCTTCTCCAAGG+CGG 0.694901 4_1:-45517457 Msa0550110:three_prime_UTR
TATCTTCACAAGTGACCCAG+CGG 0.704700 4_1:+45517329 None:intergenic
TTCATTGGCACATTCCACAG+TGG 0.731153 4_1:+45517276 None:intergenic
AATTGAACCTGGAAACTGTG+GGG 0.731440 4_1:+45520429 None:intergenic
TGCTTGGAAACATGCCACTG+TGG 0.736217 4_1:-45517290 Msa0550110:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCGACTTTTAATTTAA+GGG - chr4_1:45517127-45517146 Msa0550110:intron 15.0%
!!! TAATTTTTGACAAACTTTAT+AGG - chr4_1:45518306-45518325 Msa0550110:intron 15.0%
!!! AATTTTTGACAAACTTTATA+GGG - chr4_1:45518307-45518326 Msa0550110:intron 15.0%
!! TAAAAAAATTTACATACCTT+TGG + chr4_1:45518640-45518659 None:intergenic 15.0%
!! TTCATAAATAAAATTTCCAA+TGG - chr4_1:45518746-45518765 Msa0550110:CDS 15.0%
!!! TTTTAAAAATTGTGTATCTA+TGG + chr4_1:45519391-45519410 None:intergenic 15.0%
!!! AAGTTTCATTTTTGTTTAAT+AGG + chr4_1:45519909-45519928 None:intergenic 15.0%
!!! ATTTTAATCCATAAATAACA+TGG - chr4_1:45520712-45520731 Msa0550110:CDS 15.0%
!!! AAATTTGGAATTACTTATAC+TGG - chr4_1:45517023-45517042 Msa0550110:intron 20.0%
!! AATTACTTATACTGGTAATT+TGG - chr4_1:45517031-45517050 Msa0550110:intron 20.0%
!!! CAAATTCGACTTTTAATTTA+AGG - chr4_1:45517126-45517145 Msa0550110:intron 20.0%
!!! GTTGATTATTTAGAGTTTAA+TGG - chr4_1:45518087-45518106 Msa0550110:CDS 20.0%
!! TCAAAAATTAATGTACCTTT+CGG + chr4_1:45518296-45518315 None:intergenic 20.0%
!! TTGATTACTTGAAAGAATTT+GGG - chr4_1:45518428-45518447 Msa0550110:CDS 20.0%
!! TTAAGTATCTGTACTATTAT+GGG - chr4_1:45518536-45518555 Msa0550110:intron 20.0%
!!! TGTTACATATTTTATCATGA+AGG - chr4_1:45518808-45518827 Msa0550110:CDS 20.0%
!!! ATTTAAAGTTGAATATGCAA+TGG + chr4_1:45519440-45519459 None:intergenic 20.0%
!! AATACAGTAAGATTAATATG+CGG + chr4_1:45519757-45519776 None:intergenic 20.0%
!! TATATCTTGCAAATTATCTT+AGG + chr4_1:45520674-45520693 None:intergenic 20.0%
!!! AGTTTAATTTTTTCTTCGTG+AGG + chr4_1:45516792-45516811 None:intergenic 25.0%
!!! AGGTTTTTAAAGAAACAATG+CGG - chr4_1:45516994-45517013 Msa0550110:intron 25.0%
! AAAGTCGAATTTGAATATTC+CGG + chr4_1:45517119-45517138 None:intergenic 25.0%
! TTATGAATTGAGATTAGTGT+TGG - chr4_1:45517202-45517221 Msa0550110:intron 25.0%
! AGAATTATTTGAATGTAACC+AGG - chr4_1:45517301-45517320 Msa0550110:three_prime_UTR 25.0%
! CAAAATATGCACTGAAAATT+TGG + chr4_1:45517554-45517573 None:intergenic 25.0%
! TTTAGGAAAATCAAAAACCA+TGG + chr4_1:45518241-45518260 None:intergenic 25.0%
! ATGCAACAATTGTAAATTTC+AGG - chr4_1:45518405-45518424 Msa0550110:CDS 25.0%
! GTTGATTACTTGAAAGAATT+TGG - chr4_1:45518427-45518446 Msa0550110:CDS 25.0%
! GTTAAGTATCTGTACTATTA+TGG - chr4_1:45518535-45518554 Msa0550110:intron 25.0%
! AATGCTTACAATTAAACCAA+TGG - chr4_1:45518582-45518601 Msa0550110:intron 25.0%
!! ATTGTCAGTATTTTATCATC+AGG + chr4_1:45518786-45518805 None:intergenic 25.0%
!! AATGGTAACAAATTTTGTAG+CGG + chr4_1:45518959-45518978 None:intergenic 25.0%
! GCTTCAGAAAAATTACTTAA+TGG + chr4_1:45518977-45518996 None:intergenic 25.0%
!! GTAAAGTATTATTTGTCTCT+CGG - chr4_1:45519206-45519225 Msa0550110:CDS 25.0%
! TCTAAATATCATTGATACCT+GGG + chr4_1:45519368-45519387 None:intergenic 25.0%
! AGATGAAGAATTTAACAACA+TGG - chr4_1:45519583-45519602 Msa0550110:intron 25.0%
! TCTTACTGTATTAACTTCAT+TGG - chr4_1:45519765-45519784 Msa0550110:intron 25.0%
!!! ATTTTTGTTTAATAGGACAG+AGG + chr4_1:45519902-45519921 None:intergenic 25.0%
!!! TTTTTGTGTTGTTGATGGTT+GGG + chr4_1:45516538-45516557 None:intergenic 30.0%
!!! TTTTTTGTGTTGTTGATGGT+TGG + chr4_1:45516539-45516558 None:intergenic 30.0%
!!! AGCATTTTTTGTGTTGTTGA+TGG + chr4_1:45516543-45516562 None:intergenic 30.0%
!!! TGTTCGTGTTTTTTTGTGTA+AGG + chr4_1:45516734-45516753 None:intergenic 30.0%
!! TTTTAAAGAAACAATGCGGA+AGG - chr4_1:45516998-45517017 Msa0550110:intron 30.0%
TTTAAAGAAACAATGCGGAA+GGG - chr4_1:45516999-45517018 Msa0550110:intron 30.0%
ATACTGGTAATTTGGTTGAT+AGG - chr4_1:45517039-45517058 Msa0550110:intron 30.0%
TGCTAATTTGAAAAGATTGC+CGG - chr4_1:45517097-45517116 Msa0550110:intron 30.0%
TAACCATAATACCTGATAAG+TGG + chr4_1:45517185-45517204 None:intergenic 30.0%
ACATCTTTGATTAGAGTTGT+CGG - chr4_1:45517348-45517367 Msa0550110:three_prime_UTR 30.0%
CATTTCTTCAATTCTCTAGA+TGG - chr4_1:45517872-45517891 Msa0550110:intron 30.0%
! ATTTAGAGTTTAATGGAGTC+AGG - chr4_1:45518094-45518113 Msa0550110:CDS 30.0%
AAGCTGTAAGATAACAACTT+CGG + chr4_1:45518153-45518172 None:intergenic 30.0%
!! TTTGATTTTCCTAAAGCTCT+CGG - chr4_1:45518246-45518265 Msa0550110:intron 30.0%
TAGTACAGATACTTAACAAG+AGG + chr4_1:45518532-45518551 None:intergenic 30.0%
!!! CATGAAGGTAAAGTTTTTTC+AGG - chr4_1:45518823-45518842 Msa0550110:CDS 30.0%
!!! TAAAGTTTTTTCAGGACCTA+GGG - chr4_1:45518831-45518850 Msa0550110:CDS 30.0%
ATAGCCTTTACAAGAAGATT+AGG - chr4_1:45518909-45518928 Msa0550110:intron 30.0%
AAAGAAAAAAGACATACCAC+AGG + chr4_1:45518935-45518954 None:intergenic 30.0%
AATCAGAGTGATAAACTTTG+TGG + chr4_1:45519007-45519026 None:intergenic 30.0%
TTATAAACTGTCTGATCAAG+AGG - chr4_1:45519031-45519050 Msa0550110:CDS 30.0%
!! TGAGTTTGCTTGTTGTATAT+AGG - chr4_1:45519073-45519092 Msa0550110:CDS 30.0%
CACTGAAGAAAATATTCCAA+AGG - chr4_1:45519124-45519143 Msa0550110:CDS 30.0%
TTGCGCAAATAAGTATACTT+AGG + chr4_1:45519308-45519327 None:intergenic 30.0%
GTCTAAATATCATTGATACC+TGG + chr4_1:45519369-45519388 None:intergenic 30.0%
TGACAGTAGATTGAAGTTTA+TGG + chr4_1:45519631-45519650 None:intergenic 30.0%
!! TCAAAGTACCCCTTTTATTA+AGG - chr4_1:45520149-45520168 Msa0550110:CDS 30.0%
!! CAAAGTACCCCTTTTATTAA+GGG - chr4_1:45520150-45520169 Msa0550110:CDS 30.0%
! AGAGATAGCCATGTTATTTA+TGG + chr4_1:45520723-45520742 None:intergenic 30.0%
GATGGTTGGGAATTAACAAA+TGG + chr4_1:45516525-45516544 None:intergenic 35.0%
! GATTTTGCATTGTGTCTTCT+GGG + chr4_1:45516690-45516709 None:intergenic 35.0%
! TGATTTTGCATTGTGTCTTC+TGG + chr4_1:45516691-45516710 None:intergenic 35.0%
!!! TCGTGTTTTTTTGTGTAAGG+TGG + chr4_1:45516731-45516750 None:intergenic 35.0%
!!! TTTTTTCTTCGTGAGGTGTT+GGG + chr4_1:45516785-45516804 None:intergenic 35.0%
!!! ATTTTTTCTTCGTGAGGTGT+TGG + chr4_1:45516786-45516805 None:intergenic 35.0%
! TGGGGTTCTTTTTCTTACTA+AGG + chr4_1:45516826-45516845 None:intergenic 35.0%
AAATTGAACCTGGAAACTGT+GGG + chr4_1:45516845-45516864 None:intergenic 35.0%
TAAATTGAACCTGGAAACTG+TGG + chr4_1:45516846-45516865 None:intergenic 35.0%
TTCATCATCACACCGAAAAA+GGG + chr4_1:45516922-45516941 None:intergenic 35.0%
TGAAGAAGAGGGAATGATTA+TGG - chr4_1:45516938-45516957 Msa0550110:intron 35.0%
!! TGGTAATTTGGTTGATAGGT+TGG - chr4_1:45517043-45517062 Msa0550110:intron 35.0%
!! GGTAATTTGGTTGATAGGTT+GGG - chr4_1:45517044-45517063 Msa0550110:intron 35.0%
ACTCTAATCAAAGATGTGTC+TGG + chr4_1:45517345-45517364 None:intergenic 35.0%
!! TAGAGTTGTCGGTGTTAAAA+AGG - chr4_1:45517359-45517378 Msa0550110:three_prime_UTR 35.0%
ACACAACACAACAAGTAAGT+TGG + chr4_1:45517444-45517463 None:intergenic 35.0%
TGTTGTGTTGTGTGTATTGT+TGG - chr4_1:45517451-45517470 Msa0550110:three_prime_UTR 35.0%
GTTGTGTGTATTGTTGGAAA+TGG - chr4_1:45517457-45517476 Msa0550110:three_prime_UTR 35.0%
ATGAGTGAATGCCTCATTAT+TGG + chr4_1:45517493-45517512 None:intergenic 35.0%
! TAATGAGGCATTCACTCATT+CGG - chr4_1:45517494-45517513 Msa0550110:three_prime_UTR 35.0%
TCATTGGAATGAAATCTGGT+GGG - chr4_1:45517528-45517547 Msa0550110:three_prime_UTR 35.0%
! TTATTCGGTGAAACACATGT+GGG + chr4_1:45517680-45517699 None:intergenic 35.0%
AGTGAACACTTTCTCGAAAT+CGG + chr4_1:45517789-45517808 None:intergenic 35.0%
AAAATGAGCTTAGCTATCTG+AGG + chr4_1:45517922-45517941 None:intergenic 35.0%
!! AAGCTCATTTTGATGTCAAG+AGG - chr4_1:45517931-45517950 Msa0550110:CDS 35.0%
!! AGCTCATTTTGATGTCAAGA+GGG - chr4_1:45517932-45517951 Msa0550110:CDS 35.0%
! TTGAAATCGGTGTTCGTTAA+GGG - chr4_1:45517988-45518007 Msa0550110:CDS 35.0%
TTCGTTAAGGGAGAGTTTAT+TGG - chr4_1:45518000-45518019 Msa0550110:CDS 35.0%
TCGTTAAGGGAGAGTTTATT+GGG - chr4_1:45518001-45518020 Msa0550110:CDS 35.0%
ATTGGGGATGCAATGTTAAA+AGG - chr4_1:45518018-45518037 Msa0550110:CDS 35.0%
GAAGTTGTTATCTTACAGCT+TGG - chr4_1:45518152-45518171 Msa0550110:CDS 35.0%
AAGTATGAGAGAAGACAACA+AGG + chr4_1:45518355-45518374 None:intergenic 35.0%
AGAATTTGGGCTTGAAAGTA+AGG - chr4_1:45518441-45518460 Msa0550110:CDS 35.0%
TTGGTAAGTTGCTTGCATTT+CGG - chr4_1:45518467-45518486 Msa0550110:intron 35.0%
AAGTCAACACAAAAGACCAT+TGG + chr4_1:45518601-45518620 None:intergenic 35.0%
!!! AATGGTCTTTTGTGTTGACT+TGG - chr4_1:45518600-45518619 Msa0550110:intron 35.0%
GGAAACATAACAGAAACCAT+TGG + chr4_1:45518765-45518784 None:intergenic 35.0%
!!! GTAAAGTTTTTTCAGGACCT+AGG - chr4_1:45518830-45518849 Msa0550110:CDS 35.0%
!!! AAAGTTTTTTCAGGACCTAG+GGG - chr4_1:45518832-45518851 Msa0550110:CDS 35.0%
! GGGAAATTTTACAAGCATGT+TGG + chr4_1:45518876-45518895 None:intergenic 35.0%
! CTCAGCAGATTAGTTAATTG+AGG + chr4_1:45519057-45519076 None:intergenic 35.0%
ATTCCAAAGGTTATAGCTCT+TGG - chr4_1:45519137-45519156 Msa0550110:CDS 35.0%
AGCATAGTACATAAGCTTGA+AGG - chr4_1:45519179-45519198 Msa0550110:CDS 35.0%
TATTGTATCTGAGCAGCATT+GGG + chr4_1:45519271-45519290 None:intergenic 35.0%
ATATTGTATCTGAGCAGCAT+TGG + chr4_1:45519272-45519291 None:intergenic 35.0%
TACTTATTTGCGCAAAACCA+TGG - chr4_1:45519313-45519332 Msa0550110:CDS 35.0%
TCGAATTATTCCAAGACACA+AGG - chr4_1:45519508-45519527 Msa0550110:intron 35.0%
TCAATCTACTGTCATGAAAG+AGG - chr4_1:45519637-45519656 Msa0550110:intron 35.0%
! CGGTTTTTCTTTTTACGTCT+GGG + chr4_1:45519687-45519706 None:intergenic 35.0%
! TCGGTTTTTCTTTTTACGTC+TGG + chr4_1:45519688-45519707 None:intergenic 35.0%
GACGTAAAAAGAAAAACCGA+TGG - chr4_1:45519688-45519707 Msa0550110:intron 35.0%
ATCATAACTGTTCTTCTCCA+AGG - chr4_1:45519810-45519829 Msa0550110:intron 35.0%
TGTGCCAATGAATAGAATTG+CGG - chr4_1:45520005-45520024 Msa0550110:intron 35.0%
TGTTGCACTAATTTCTATCG+TGG - chr4_1:45520117-45520136 Msa0550110:CDS 35.0%
CAACAAGCCCTTAATAAAAG+GGG + chr4_1:45520160-45520179 None:intergenic 35.0%
CCAACAAGCCCTTAATAAAA+GGG + chr4_1:45520161-45520180 None:intergenic 35.0%
TCCAACAAGCCCTTAATAAA+AGG + chr4_1:45520162-45520181 None:intergenic 35.0%
!! TTATTAAGGGCTTGTTGGAT+TGG - chr4_1:45520163-45520182 Msa0550110:CDS 35.0%
ATAAGCTCTCACAAGTGATT+GGG + chr4_1:45520197-45520216 None:intergenic 35.0%
TGGAAAGTGGAAACAACTTA+TGG - chr4_1:45520216-45520235 Msa0550110:CDS 35.0%
!! AATTTGAGCGTTGATCTTTC+AGG + chr4_1:45520565-45520584 None:intergenic 35.0%
TGTGGATAGAAGAATGAGGA+AGG + chr4_1:45516593-45516612 None:intergenic 40.0%
!!! GGTGAGTTTTGGGTTTTTGA+GGG + chr4_1:45516616-45516635 None:intergenic 40.0%
!!! TGGTGAGTTTTGGGTTTTTG+AGG + chr4_1:45516617-45516636 None:intergenic 40.0%
!!! GGTTTTGGTGTTGTTCGTTT+GGG + chr4_1:45516659-45516678 None:intergenic 40.0%
!!! TGGTTTTGGTGTTGTTCGTT+TGG + chr4_1:45516660-45516679 None:intergenic 40.0%
!!! TTCTGGGAATTGGTTGGTTT+TGG + chr4_1:45516674-45516693 None:intergenic 40.0%
!! TAGTGAAGTTGGTGAAGGAT+TGG + chr4_1:45516757-45516776 None:intergenic 40.0%
!! TCTTGTAGTGAAGTTGGTGA+AGG + chr4_1:45516762-45516781 None:intergenic 40.0%
AATTGAACCTGGAAACTGTG+GGG + chr4_1:45516844-45516863 None:intergenic 40.0%
GATTGAGCGTAAATTGAACC+TGG + chr4_1:45516855-45516874 None:intergenic 40.0%
! CTCCATTGAGTACCCTTTTT+CGG - chr4_1:45516907-45516926 Msa0550110:intron 40.0%
CTTCATCATCACACCGAAAA+AGG + chr4_1:45516923-45516942 None:intergenic 40.0%
TGGAAGCTATTGAGATTCGT+AGG - chr4_1:45516958-45516977 Msa0550110:intron 40.0%
AGCTATTGAGATTCGTAGGA+AGG - chr4_1:45516962-45516981 Msa0550110:intron 40.0%
ACAATGCGGAAGGGTAAATT+TGG - chr4_1:45517008-45517027 Msa0550110:intron 40.0%
!! AATTTGGTTGATAGGTTGGG+TGG - chr4_1:45517047-45517066 Msa0550110:intron 40.0%
!! GTGCCACTTATCAGGTATTA+TGG - chr4_1:45517179-45517198 Msa0550110:intron 40.0%
ACCCATTGACACATTGACAT+CGG - chr4_1:45517262-45517281 Msa0550110:three_prime_UTR 40.0%
ACCGATGTCAATGTGTCAAT+GGG + chr4_1:45517266-45517285 None:intergenic 40.0%
TACCGATGTCAATGTGTCAA+TGG + chr4_1:45517267-45517286 None:intergenic 40.0%
GATTGCCATAGCCAATAATG+AGG - chr4_1:45517479-45517498 Msa0550110:three_prime_UTR 40.0%
! GAATGCCTCATTATTGGCTA+TGG + chr4_1:45517487-45517506 None:intergenic 40.0%
GTGGTCATTGGAATGAAATC+TGG - chr4_1:45517524-45517543 Msa0550110:three_prime_UTR 40.0%
GTCATTGGAATGAAATCTGG+TGG - chr4_1:45517527-45517546 Msa0550110:three_prime_UTR 40.0%
TGGGATTCATTTCGAAAGTG+TGG - chr4_1:45517652-45517671 Msa0550110:CDS 40.0%
! GGGATTCATTTCGAAAGTGT+GGG - chr4_1:45517653-45517672 Msa0550110:CDS 40.0%
! CTTATTCGGTGAAACACATG+TGG + chr4_1:45517681-45517700 None:intergenic 40.0%
CTAGCACTCACTCTCTTATT+CGG + chr4_1:45517695-45517714 None:intergenic 40.0%
GAGGGAAACTTGAGTCTATA+AGG - chr4_1:45517950-45517969 Msa0550110:CDS 40.0%
! GTTGAAATCGGTGTTCGTTA+AGG - chr4_1:45517987-45518006 Msa0550110:CDS 40.0%
CGTTAAGGGAGAGTTTATTG+GGG - chr4_1:45518002-45518021 Msa0550110:CDS 40.0%
! GTGGAGATAATGTTTTGCTG+CGG - chr4_1:45518040-45518059 Msa0550110:CDS 40.0%
TAGAGTTTAATGGAGTCAGG+AGG - chr4_1:45518097-45518116 Msa0550110:CDS 40.0%
AGAGTTTAATGGAGTCAGGA+GGG - chr4_1:45518098-45518117 Msa0550110:CDS 40.0%
TTACAGCTTGGAAGAAGTGA+AGG - chr4_1:45518164-45518183 Msa0550110:CDS 40.0%
TGTGCAGTTCTATCTGGATA+TGG - chr4_1:45518191-45518210 Msa0550110:intron 40.0%
GTGCAGTTCTATCTGGATAT+GGG - chr4_1:45518192-45518211 Msa0550110:intron 40.0%
! GGTTTAGATGCGAAGGATTT+TGG - chr4_1:45518213-45518232 Msa0550110:intron 40.0%
TTTGGAAGAAATGAGCCGAA+AGG - chr4_1:45518278-45518297 Msa0550110:intron 40.0%
TATTATGGGATTACCCGAGA+TGG - chr4_1:45518550-45518569 Msa0550110:intron 40.0%
ATTATGGGATTACCCGAGAT+GGG - chr4_1:45518551-45518570 Msa0550110:intron 40.0%
AGGCTATAAGTGAGTAGAGT+GGG + chr4_1:45518896-45518915 None:intergenic 40.0%
AAGGCTATAAGTGAGTAGAG+TGG + chr4_1:45518897-45518916 None:intergenic 40.0%
CAGGCCTAATCTTCTTGTAA+AGG + chr4_1:45518916-45518935 None:intergenic 40.0%
TTACAAGAAGATTAGGCCTG+TGG - chr4_1:45518916-45518935 Msa0550110:intron 40.0%
CAGAGTGATAAACTTTGTGG+TGG + chr4_1:45519004-45519023 None:intergenic 40.0%
! GGTCATATTCTTGATGACCA+AGG - chr4_1:45519094-45519113 Msa0550110:CDS 40.0%
! ATATTCTTGATGACCAAGGC+TGG - chr4_1:45519098-45519117 Msa0550110:CDS 40.0%
CAATGACATCGTGCAAAGTT+CGG + chr4_1:45519340-45519359 None:intergenic 40.0%
!! GCAATTCTCTTGCTGTTATC+AGG - chr4_1:45519462-45519481 Msa0550110:intron 40.0%
!! TTTTTCAGCTATTCCCTCGA+GGG - chr4_1:45519485-45519504 Msa0550110:intron 40.0%
TATTCCAAGACACAAGGTTC+TGG - chr4_1:45519514-45519533 Msa0550110:intron 40.0%
ATAACTGTTCTTCTCCAAGG+CGG - chr4_1:45519813-45519832 Msa0550110:intron 40.0%
CAGAAACTCAGTTGAGGAAA+AGG - chr4_1:45519872-45519891 Msa0550110:intron 40.0%
ACTTGCAATTTATCATCCGC+TGG - chr4_1:45519925-45519944 Msa0550110:intron 40.0%
CTTGCAATTTATCATCCGCT+GGG - chr4_1:45519926-45519945 Msa0550110:intron 40.0%
! CAATTGCTAAAGAGTGTGCT+TGG - chr4_1:45519964-45519983 Msa0550110:intron 40.0%
GTCTCCGCAATTCTATTCAT+TGG + chr4_1:45520012-45520031 None:intergenic 40.0%
! TAGACAGTGCAAGAAGTACA+CGG + chr4_1:45520040-45520059 None:intergenic 40.0%
ACTTCTTGCACTGTCTAAGA+TGG - chr4_1:45520043-45520062 Msa0550110:intron 40.0%
! GCACTGTCTAAGATGGTTTA+AGG - chr4_1:45520050-45520069 Msa0550110:intron 40.0%
! CCCTTTTATTAAGGGCTTGT+TGG - chr4_1:45520158-45520177 Msa0550110:CDS 40.0%
CATAAGCTCTCACAAGTGAT+TGG + chr4_1:45520198-45520217 None:intergenic 40.0%
CAATCACTTGTGAGAGCTTA+TGG - chr4_1:45520196-45520215 Msa0550110:CDS 40.0%
TTGTGAGAGCTTATGGAAAG+TGG - chr4_1:45520203-45520222 Msa0550110:CDS 40.0%
!!! TACGACTTTTTTCCCCTGAT+AGG - chr4_1:45520420-45520439 Msa0550110:CDS 40.0%
! TTTTCCCCTGATAGGAATTG+TGG - chr4_1:45520428-45520447 Msa0550110:CDS 40.0%
TCTTCCACAATTCCTATCAG+GGG + chr4_1:45520435-45520454 None:intergenic 40.0%
GTCTTCCACAATTCCTATCA+GGG + chr4_1:45520436-45520455 None:intergenic 40.0%
AGTCTTCCACAATTCCTATC+AGG + chr4_1:45520437-45520456 None:intergenic 40.0%
CGTTAACAGCGATGATATGT+CGG + chr4_1:45520489-45520508 None:intergenic 40.0%
GAGAATGATATCTTGCAGCT+TGG + chr4_1:45520628-45520647 None:intergenic 40.0%
GCTGCAAGATATCATTCTCA+AGG - chr4_1:45520629-45520648 Msa0550110:CDS 40.0%
AGGGTGTGGATAGAAGAATG+AGG + chr4_1:45516597-45516616 None:intergenic 45.0%
!!! GTTTTGGGTTTTTGAGGGTG+TGG + chr4_1:45516611-45516630 None:intergenic 45.0%
!! TGACGATGGTGGTGAGTTTT+GGG + chr4_1:45516626-45516645 None:intergenic 45.0%
!! TTGACGATGGTGGTGAGTTT+TGG + chr4_1:45516627-45516646 None:intergenic 45.0%
!!! GGTGTTGTTCGTTTGGGTTT+TGG + chr4_1:45516653-45516672 None:intergenic 45.0%
! TGTGTCTTCTGGGAATTGGT+TGG + chr4_1:45516680-45516699 None:intergenic 45.0%
! GCATTGTGTCTTCTGGGAAT+TGG + chr4_1:45516684-45516703 None:intergenic 45.0%
! GTTGGGTCTTGTAGTGAAGT+TGG + chr4_1:45516768-45516787 None:intergenic 45.0%
AAAAGAACCCCACAGTTTCC+AGG - chr4_1:45516834-45516853 Msa0550110:intron 45.0%
ATCTCCAAGTGATCCTGATG+TGG - chr4_1:45516872-45516891 Msa0550110:intron 45.0%
TCTCCAAGTGATCCTGATGT+GGG - chr4_1:45516873-45516892 Msa0550110:intron 45.0%
!! CGAAAAAGGGTACTCAATGG+AGG + chr4_1:45516909-45516928 None:intergenic 45.0%
!! CACCGAAAAAGGGTACTCAA+TGG + chr4_1:45516912-45516931 None:intergenic 45.0%
! TCGGTGTGATGATGAAGAAG+AGG - chr4_1:45516926-45516945 Msa0550110:intron 45.0%
! CGGTGTGATGATGAAGAAGA+GGG - chr4_1:45516927-45516946 Msa0550110:intron 45.0%
TCGTAGGAAGGTTACTGAAG+AGG - chr4_1:45516974-45516993 Msa0550110:intron 45.0%
!! CTCAAGTTGTGCCACTTATC+AGG - chr4_1:45517171-45517190 Msa0550110:intron 45.0%
TAACCAGGTGTGTGTTGTGT+CGG - chr4_1:45517316-45517335 Msa0550110:three_prime_UTR 45.0%
TCACTCATTCGGCACATATG+TGG - chr4_1:45517505-45517524 Msa0550110:three_prime_UTR 45.0%
TTCGGCACATATGTGGTCAT+TGG - chr4_1:45517512-45517531 Msa0550110:three_prime_UTR 45.0%
TGTGTCTCGTCACTTCATGT+GGG - chr4_1:45517633-45517652 Msa0550110:CDS 45.0%
CTATAAGGAACCGTGTTGAG+TGG - chr4_1:45517965-45517984 Msa0550110:CDS 45.0%
CCGATTTCAACCACTCAACA+CGG + chr4_1:45517978-45517997 None:intergenic 45.0%
CCGTGTTGAGTGGTTGAAAT+CGG - chr4_1:45517975-45517994 Msa0550110:CDS 45.0%
GGGGATGCAATGTTAAAAGG+TGG - chr4_1:45518021-45518040 Msa0550110:CDS 45.0%
! AATGTTTTGCTGCGGAGTGA+CGG - chr4_1:45518048-45518067 Msa0550110:CDS 45.0%
TTAATGGAGTCAGGAGGGAA+TGG - chr4_1:45518103-45518122 Msa0550110:CDS 45.0%
!! GGATGGGTTATGTTGTGAGT+CGG - chr4_1:45518124-45518143 Msa0550110:CDS 45.0%
GGATATGGGTTTAGATGCGA+AGG - chr4_1:45518206-45518225 Msa0550110:intron 45.0%
GTATAGTGACCGAGAGCTTT+AGG + chr4_1:45518258-45518277 None:intergenic 45.0%
AGCTCTCGGTCACTATACTT+TGG - chr4_1:45518260-45518279 Msa0550110:intron 45.0%
GGGCTTGAAAGTAAGGATGT+TGG - chr4_1:45518448-45518467 Msa0550110:intron 45.0%
TGCATTTCGGCCACAATTGA+TGG - chr4_1:45518480-45518499 Msa0550110:intron 45.0%
! CGTGCAGCATTGAAGAACAA+TGG - chr4_1:45518503-45518522 Msa0550110:intron 45.0%
GGAGATGACTATTGTGCCAA+AGG - chr4_1:45518621-45518640 Msa0550110:intron 45.0%
GGTCCAAGAGCTATAACCTT+TGG + chr4_1:45519143-45519162 None:intergenic 45.0%
ACGATGTCATTGAGTTTCCC+AGG - chr4_1:45519348-45519367 Msa0550110:CDS 45.0%
!! GTTTTTCAGCTATTCCCTCG+AGG - chr4_1:45519484-45519503 Msa0550110:intron 45.0%
TGGAATAATTCGACCCTCGA+GGG + chr4_1:45519501-45519520 None:intergenic 45.0%
TTGGAATAATTCGACCCTCG+AGG + chr4_1:45519502-45519521 None:intergenic 45.0%
TTACGTCTGGGCTGTAGATT+GGG + chr4_1:45519675-45519694 None:intergenic 45.0%
TTTACGTCTGGGCTGTAGAT+TGG + chr4_1:45519676-45519695 None:intergenic 45.0%
! AAGAAAAACCGATGGCTCTG+TGG - chr4_1:45519696-45519715 Msa0550110:intron 45.0%
! TCTGTTTTCCACAGAGCCAT+CGG + chr4_1:45519707-45519726 None:intergenic 45.0%
TAACTGTTCTTCTCCAAGGC+GGG - chr4_1:45519814-45519833 Msa0550110:intron 45.0%
TATCTTCACAAGTGACCCAG+CGG + chr4_1:45519944-45519963 None:intergenic 45.0%
TTCATTGGCACATTCCACAG+TGG + chr4_1:45519997-45520016 None:intergenic 45.0%
! AGACAGTGCAAGAAGTACAC+GGG + chr4_1:45520039-45520058 None:intergenic 45.0%
TGAATCTGCTGATACTCAGC+CGG + chr4_1:45520534-45520553 None:intergenic 45.0%
!! GTTTTGGCAGTTGACGATGG+TGG + chr4_1:45516637-45516656 None:intergenic 50.0%
!! TGGGTTTTGGCAGTTGACGA+TGG + chr4_1:45516640-45516659 None:intergenic 50.0%
GAACCCACATCAGGATCACT+TGG + chr4_1:45516879-45516898 None:intergenic 50.0%
GGAAGTGAAGAACCCACATC+AGG + chr4_1:45516888-45516907 None:intergenic 50.0%
GTGTGTCTCGTCACTTCATG+TGG - chr4_1:45517632-45517651 Msa0550110:CDS 50.0%
! ATGTTTTGCTGCGGAGTGAC+GGG - chr4_1:45518049-45518068 Msa0550110:CDS 50.0%
GGTTCGTGTGCAGTTCTATC+TGG - chr4_1:45518185-45518204 Msa0550110:intron 50.0%
!! TGCGAAGGATTTTGGCACCA+TGG - chr4_1:45518221-45518240 Msa0550110:intron 50.0%
ATGCTGCACGCCATCAATTG+TGG + chr4_1:45518493-45518512 None:intergenic 50.0%
CATTCTCCTCATCCCATCTC+GGG + chr4_1:45518566-45518585 None:intergenic 50.0%
GCATTCTCCTCATCCCATCT+CGG + chr4_1:45518567-45518586 None:intergenic 50.0%
GACCTAGGGGTTCGAAATGA+CGG - chr4_1:45518845-45518864 Msa0550110:CDS 50.0%
ACCTAGGGGTTCGAAATGAC+GGG - chr4_1:45518846-45518865 Msa0550110:CDS 50.0%
TTCTTCAGTGACTCCAGCCT+TGG + chr4_1:45519114-45519133 None:intergenic 50.0%
TGTCTCTCGGCATACGTCTT+CGG - chr4_1:45519219-45519238 Msa0550110:CDS 50.0%
ATCGTGCAAAGTTCGGACCA+TGG + chr4_1:45519333-45519352 None:intergenic 50.0%
! TCCAAGACACAAGGTTCTGG+TGG - chr4_1:45519517-45519536 Msa0550110:intron 50.0%
TCCACCAGAACCTTGTGTCT+TGG + chr4_1:45519521-45519540 None:intergenic 50.0%
TACGTCTGGGCTGTAGATTG+GGG + chr4_1:45519674-45519693 None:intergenic 50.0%
GAGTCATTTAACACCCGCCT+TGG + chr4_1:45519830-45519849 None:intergenic 50.0%
GTGCAGCAGAAACTCAGTTG+AGG - chr4_1:45519866-45519885 Msa0550110:intron 50.0%
TGCTTGGAAACATGCCACTG+TGG - chr4_1:45519980-45519999 Msa0550110:intron 50.0%
TTACCTTGAGCCGTCTATCC+CGG - chr4_1:45520512-45520531 Msa0550110:CDS 50.0%
TGATACTCAGCCGGGATAGA+CGG + chr4_1:45520525-45520544 None:intergenic 50.0%
GAATCTGCTGATACTCAGCC+GGG + chr4_1:45520533-45520552 None:intergenic 50.0%
TGTCCGACACAACACACACC+TGG + chr4_1:45517322-45517341 None:intergenic 55.0%
! TGTTTTGCTGCGGAGTGACG+GGG - chr4_1:45518050-45518069 Msa0550110:CDS 55.0%
TGGAGTCAGGAGGGAATGGA+TGG - chr4_1:45518107-45518126 Msa0550110:CDS 55.0%
GGAGTCAGGAGGGAATGGAT+GGG - chr4_1:45518108-45518127 Msa0550110:CDS 55.0%
GGATTACCCGAGATGGGATG+AGG - chr4_1:45518557-45518576 Msa0550110:intron 55.0%
TCCCGTCATTTCGAACCCCT+AGG + chr4_1:45518850-45518869 None:intergenic 55.0%
AGCTCTTGGACCTGAGCTCT+TGG - chr4_1:45519151-45519170 Msa0550110:CDS 55.0%
GCTCTTGGACCTGAGCTCTT+GGG - chr4_1:45519152-45519171 Msa0550110:CDS 55.0%
ATGCTGCATCCCAAGAGCTC+AGG + chr4_1:45519164-45519183 None:intergenic 55.0%
GGCATACGTCTTCGGCAACT+GGG - chr4_1:45519227-45519246 Msa0550110:CDS 55.0%
! GTGCAAGAAGTACACGGGTC+AGG + chr4_1:45520034-45520053 None:intergenic 55.0%
CGGCATACGTCTTCGGCAAC+TGG - chr4_1:45519226-45519245 Msa0550110:CDS 60.0%
CAGCCGGGATAGACGGCTCA+AGG + chr4_1:45520518-45520537 None:intergenic 65.0%
! GCTGCGGAGTGACGGGGAGT+TGG - chr4_1:45518056-45518075 Msa0550110:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 45516515 45520777 45516515 ID=Msa0550110;Name=Msa0550110
chr4_1 mRNA 45516515 45520777 45516515 ID=Msa0550110-mRNA-1;Parent=Msa0550110;Name=Msa0550110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=43|1|1|1|0.83|0.71|7|713|617
chr4_1 exon 45516515 45516850 45516515 ID=Msa0550110-mRNA-1:exon:12026;Parent=Msa0550110-mRNA-1
chr4_1 exon 45517221 45517808 45517221 ID=Msa0550110-mRNA-1:exon:12025;Parent=Msa0550110-mRNA-1
chr4_1 exon 45517923 45518197 45517923 ID=Msa0550110-mRNA-1:exon:12024;Parent=Msa0550110-mRNA-1
chr4_1 exon 45518355 45518462 45518355 ID=Msa0550110-mRNA-1:exon:12023;Parent=Msa0550110-mRNA-1
chr4_1 exon 45518650 45518865 45518650 ID=Msa0550110-mRNA-1:exon:12022;Parent=Msa0550110-mRNA-1
chr4_1 exon 45518993 45519401 45518993 ID=Msa0550110-mRNA-1:exon:12021;Parent=Msa0550110-mRNA-1
chr4_1 exon 45520100 45520777 45520100 ID=Msa0550110-mRNA-1:exon:12020;Parent=Msa0550110-mRNA-1
chr4_1 five_prime_UTR 45520735 45520777 45520735 ID=Msa0550110-mRNA-1:five_prime_utr;Parent=Msa0550110-mRNA-1
chr4_1 CDS 45520100 45520734 45520100 ID=Msa0550110-mRNA-1:cds;Parent=Msa0550110-mRNA-1
chr4_1 CDS 45518993 45519401 45518993 ID=Msa0550110-mRNA-1:cds;Parent=Msa0550110-mRNA-1
chr4_1 CDS 45518650 45518865 45518650 ID=Msa0550110-mRNA-1:cds;Parent=Msa0550110-mRNA-1
chr4_1 CDS 45518355 45518462 45518355 ID=Msa0550110-mRNA-1:cds;Parent=Msa0550110-mRNA-1
chr4_1 CDS 45517923 45518197 45517923 ID=Msa0550110-mRNA-1:cds;Parent=Msa0550110-mRNA-1
chr4_1 CDS 45517598 45517808 45517598 ID=Msa0550110-mRNA-1:cds;Parent=Msa0550110-mRNA-1
chr4_1 three_prime_UTR 45517221 45517597 45517221 ID=Msa0550110-mRNA-1:three_prime_utr;Parent=Msa0550110-mRNA-1
chr4_1 three_prime_UTR 45516515 45516850 45516515 ID=Msa0550110-mRNA-1:three_prime_utr;Parent=Msa0550110-mRNA-1
Gene Sequence

>Msa0550110

ATGCTTCTTTCATATCAAAAACACACTCTTTACCTTCCTCATTCTTCTATCCACACCCTCAAAAACCCAAAACTCACCACCATCGTCAACTGCCAAAACCCAAACGAACAACACCAAAACCAACCAATTCCCAGAAGACACAATGCAAAATCAACATCATTTCTCATTCACCACCTTACACAAAAAAACACGAACACCAATCCTTCACCAACTTCACTACAAGACCCAACACCTCACGAAGAAAAAATTAAACTTTTAGAACTTTCCTTAGTAAGAAAAAGAACCCCACAGTTTCCAGGTTCAATTTACGCTCAATCTCCAAGTGATCCTGATGTGGGTTCTTCACTTCCTCCATTGAGTACCCTTTTTCGGTGTGATGATGAAGAAGAGGGAATGATTATGGAAGCTATTGAGATTCGTAGGAAGGTTACTGAAGAGGTTTTTAAAGAAACAATGCGGAAGGGTAAATTTGGAATTACTTATACTGGTAATTTGGTTGATAGGTTGGGTGGTTTTATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTGCCGGAATATTCAAATTCGACTTTTAATTTAAGGGCTAAAACTGTTATTGAAGATTCTCAAGTTGTGCCACTTATCAGATGGTTGAAGCATAATTCTCTATCGTATCCTCAGATAGCTAAGCTCATTTTGATGTCAAGAGGGAAACTTGAGTCTATAAGGAACCGTGTTGAGTGGTTGAAATCGGTGTTCGTTAAGGGAGAGTTTATTGGGGATGCAATGTTAAAAGGTGGAGATAATGTTTTGCTGCGGAGTGACGGGGAGTTGGATGAGATTGTTGATTATTTAGAGTTTAATGGAGTCAGGAGGGAATGGATGGGTTATGTTGTGAGTCGGTGTCCGAAGTTGTTATCTTACAGCTTGGAAGAAGTGAAGGTTCGTGTGCAGTTCTATCTGGATATGGGTTTAGATGCGAAGGATTTTGGCACCATGGTTTTTGATTTTCCTAAAGCTCTCGGTCACTATACTTTGGAAGAAATGAGCCGAAAGGTTGATTACTTGAAAGAATTTGGGCTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTCGGCCACAATTGATGGCGTGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAGGAGAATGCTTACAATTAAACCAATGGTCTTTTGTGTTGACTTGGAGATGACTATTGTGCCAAAGGTAAAGTTTTTTCAGGACCTAGGGGTTCGAAATGACGGGATTGCCAACATGCTTGTAAAATTTCCCACTCTACTCACTTATAGCCTTTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAAAATATTCCAAAGGTTATAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAGCTTGAAGGAAATGTAAAGTATTATTTGTCTCTCGGCATACGTCTTCGGCAACTGGGTGAAATGATTGCTGATTTCCCAATGCTGCTCAGATACAATATAGACGTTCTTCGTCCTAAGTATACTTATTTGCGCAAAACCATGGTCCGAACTTTGCACGATGTCATTGAGTTTCCCAGGTTTTTCAGCTATTCCCTCGAGGGTCGAATTATTCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATGTCAAGCTAAAATGCATGTTAGCTTGCACAGATGAAGAATTTAACAACATGGTCAAGAATATGATTAGAAAACGCCATAAACTTCAATCTACTGTCATGAAAGAGGATACTAAGCATCCCCAATCTACAGCCCAGACGTAA

Protein sequence

>Msa0550110

MLLSYQKHTLYLPHSSIHTLKNPKLTTIVNCQNPNEQHQNQPIPRRHNAKSTSFLIHHLTQKNTNTNPSPTSLQDPTPHEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLSTLFRCDDEEEGMIMEAIEIRRKVTEEVFKETMRKGKFGITYTGNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPQIAKLILMSRGKLESIRNRVEWLKSVFVKGEFIGDAMLKGGDNVLLRSDGELDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLEEVKVRVQFYLDMGLDAKDFGTMVFDFPKALGHYTLEEMSRKVDYLKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFFQDLGVRNDGIANMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVIALGPELLGCSIVHKLEGNVKYYLSLGIRLRQLGEMIADFPMLLRYNIDVLRPKYTYLRKTMVRTLHDVIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNNMVKNMIRKRHKLQSTVMKEDTKHPQSTAQT*