AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1102540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102540 MtrunA17_Chr7g0232051 92.381 210 16 0 1 210 1 210 1.69e-145 405
Msa1102540 MtrunA17_Chr4g0018621 31.651 218 106 5 46 229 66 274 3.45e-25 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102540 AT4G25170.1 27.232 224 119 5 47 226 118 341 3.78e-22 93.2
Msa1102540 AT4G25170.2 25.523 239 119 5 47 226 118 356 4.32e-20 87.8
Msa1102540 AT5G61490.1 30.412 194 113 5 47 226 70 255 3.89e-17 78.2

Find 39 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTGGAGTTGCCTGATTC+AGG 0.199308 7_3:+35663364 Msa1102540:CDS
TAGCCATGATTACAATTAAA+AGG 0.291956 7_3:-35663944 None:intergenic
GTAAATTAAAACAGGTCTTT+TGG 0.301302 7_3:+35664269 Msa1102540:three_prime_UTR
TTATCTTCTTGTTGCTGTAA+TGG 0.335551 7_3:+35662016 Msa1102540:CDS
ATCTTCTGATGAAGCCATTT+GGG 0.337113 7_3:+35663309 Msa1102540:CDS
ATAATACATATACAAATAAA+TGG 0.364870 7_3:-35664052 None:intergenic
TGTGTTGCATCAGAGGCTTC+TGG 0.368361 7_3:+35663348 Msa1102540:CDS
TATCTTCTGATGAAGCCATT+TGG 0.375555 7_3:+35663308 Msa1102540:CDS
TGCAATCTCAAGGATATAAT+AGG 0.380708 7_3:+35662836 Msa1102540:CDS
GCAAGCTGATCCTGCTGTTA+AGG 0.385703 7_3:+35662882 Msa1102540:CDS
ACTCTTATGATTATGATTCA+AGG 0.400681 7_3:+35662809 Msa1102540:CDS
GTAAAATACAGACCTGAATC+AGG 0.413501 7_3:-35663376 None:intergenic
AACAATCATCATTCATCAAT+GGG 0.416947 7_3:+35661935 Msa1102540:exon
AAACAATCATCATTCATCAA+TGG 0.432468 7_3:+35661934 Msa1102540:exon
TCAGCGTAGAAATCTTAAAC+TGG 0.444519 7_3:+35663763 Msa1102540:CDS
TGACACTGTTCCATCTCAAA+TGG 0.457616 7_3:+35662096 Msa1102540:CDS
AATTAAAAGTAAATTAAAAC+AGG 0.461372 7_3:+35664261 Msa1102540:three_prime_UTR
CCTGGGATTGATAATGCAAC+AGG 0.470439 7_3:+35663864 Msa1102540:CDS
TATCATGAAAGGAAAAGTCT+TGG 0.473359 7_3:+35663794 Msa1102540:CDS
ATTACAGCAACAAGAAGATA+AGG 0.483282 7_3:-35662014 None:intergenic
AATGATTTATTCAAGTACCC+TGG 0.511965 7_3:+35663846 Msa1102540:CDS
TCCTCAACTTCCATTTGAGA+TGG 0.521148 7_3:-35662106 None:intergenic
GATGGAACAGTGTCAAATAC+AGG 0.521605 7_3:-35662088 None:intergenic
TCTTATGACAGCATCCCAAA+TGG 0.524517 7_3:-35663323 None:intergenic
AAGAGAGAAACCTTAACAGC+AGG 0.525440 7_3:-35662892 None:intergenic
ATGATTTATTCAAGTACCCT+GGG 0.528335 7_3:+35663847 Msa1102540:CDS
AGAAAACAAGAGATAACATC+AGG 0.536095 7_3:+35662049 Msa1102540:CDS
CCTGTTGCATTATCAATCCC+AGG 0.537896 7_3:-35663864 None:intergenic
TAAGAAATGTGTTGCATCAG+AGG 0.548569 7_3:+35663341 Msa1102540:CDS
TCAAGGATTGTGCAATCTCA+AGG 0.559981 7_3:+35662826 Msa1102540:CDS
CATCATTCATCAATGGGAGG+TGG 0.560723 7_3:+35661941 Msa1102540:exon
TACAATTAAAAGGATAACAA+TGG 0.569576 7_3:-35663934 None:intergenic
TCCATCTCAAATGGAAGTTG+AGG 0.577676 7_3:+35662105 Msa1102540:CDS
GATCTGTTGATCTATGATTG+TGG 0.615202 7_3:-35662782 None:intergenic
TCTCTTTGTTCTGAACTCTG+AGG 0.618675 7_3:-35663738 None:intergenic
CTGTTGCATTATCAATCCCA+GGG 0.624881 7_3:-35663863 None:intergenic
TTATTGGCGTTACTCAACTG+AGG 0.661229 7_3:-35661989 None:intergenic
AAACAAGAGATAACATCAGG+TGG 0.661795 7_3:+35662052 Msa1102540:CDS
AATCATCATTCATCAATGGG+AGG 0.669157 7_3:+35661938 Msa1102540:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAGAAATATAATTAATTT+AGG + chr7_3:35662315-35662334 Msa1102540:intron 10.0%
!! ATAATACATATACAAATAAA+TGG - chr7_3:35664055-35664074 None:intergenic 10.0%
!! AATTAAAAGTAAATTAAAAC+AGG + chr7_3:35664261-35664280 Msa1102540:three_prime_UTR 10.0%
!! CTAAGAAATATAATTAATTT+AGG + chr7_3:35662315-35662334 Msa1102540:intron 10.0%
!! ATAATACATATACAAATAAA+TGG - chr7_3:35664055-35664074 None:intergenic 10.0%
!! AATTAAAAGTAAATTAAAAC+AGG + chr7_3:35664261-35664280 Msa1102540:three_prime_UTR 10.0%
!!! TTGTTGTTTCAAAAAATAAA+AGG + chr7_3:35662379-35662398 Msa1102540:intron 15.0%
!!! AAAAAATAAAAGGAACTTTT+GGG + chr7_3:35662389-35662408 Msa1102540:intron 15.0%
!! TCGTAAAATGAAATATATAA+TGG + chr7_3:35663643-35663662 Msa1102540:intron 15.0%
!! TTAAAAATACTTACTACTTA+TGG + chr7_3:35664195-35664214 Msa1102540:intron 15.0%
!! TAAAAATACTTACTACTTAT+GGG + chr7_3:35664196-35664215 Msa1102540:intron 15.0%
!!! TTGTTGTTTCAAAAAATAAA+AGG + chr7_3:35662379-35662398 Msa1102540:intron 15.0%
!!! AAAAAATAAAAGGAACTTTT+GGG + chr7_3:35662389-35662408 Msa1102540:intron 15.0%
!! TCGTAAAATGAAATATATAA+TGG + chr7_3:35663643-35663662 Msa1102540:intron 15.0%
!! TTAAAAATACTTACTACTTA+TGG + chr7_3:35664195-35664214 Msa1102540:intron 15.0%
!! TAAAAATACTTACTACTTAT+GGG + chr7_3:35664196-35664215 Msa1102540:intron 15.0%
!!! TTAGATGAAATTGTTTGTTT+TGG + chr7_3:35662246-35662265 Msa1102540:intron 20.0%
!!! CAAAAAATAAAAGGAACTTT+TGG + chr7_3:35662388-35662407 Msa1102540:intron 20.0%
!! GAACTTTAAATTCAAGAAAA+TGG + chr7_3:35662411-35662430 Msa1102540:intron 20.0%
!! AAATATTCACCAAGAATAAA+AGG + chr7_3:35663459-35663478 Msa1102540:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr7_3:35663538-35663557 None:intergenic 20.0%
!! AATTTAGTGTAATTATGTGT+TGG + chr7_3:35663561-35663580 Msa1102540:intron 20.0%
!!! ATATTTCATTTTACGAAGAA+TGG - chr7_3:35663639-35663658 None:intergenic 20.0%
!!! TGGATATTTTATATCATGAA+AGG + chr7_3:35663783-35663802 Msa1102540:CDS 20.0%
!! TACAATTAAAAGGATAACAA+TGG - chr7_3:35663937-35663956 None:intergenic 20.0%
!!! TATCCTTTTAATTGTAATCA+TGG + chr7_3:35663941-35663960 Msa1102540:CDS 20.0%
!!! TTAGATGAAATTGTTTGTTT+TGG + chr7_3:35662246-35662265 Msa1102540:intron 20.0%
!!! CAAAAAATAAAAGGAACTTT+TGG + chr7_3:35662388-35662407 Msa1102540:intron 20.0%
!! GAACTTTAAATTCAAGAAAA+TGG + chr7_3:35662411-35662430 Msa1102540:intron 20.0%
!! AAATATTCACCAAGAATAAA+AGG + chr7_3:35663459-35663478 Msa1102540:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr7_3:35663538-35663557 None:intergenic 20.0%
!! AATTTAGTGTAATTATGTGT+TGG + chr7_3:35663561-35663580 Msa1102540:intron 20.0%
!!! ATATTTCATTTTACGAAGAA+TGG - chr7_3:35663639-35663658 None:intergenic 20.0%
!!! TGGATATTTTATATCATGAA+AGG + chr7_3:35663783-35663802 Msa1102540:CDS 20.0%
!! TACAATTAAAAGGATAACAA+TGG - chr7_3:35663937-35663956 None:intergenic 20.0%
!!! TATCCTTTTAATTGTAATCA+TGG + chr7_3:35663941-35663960 Msa1102540:CDS 20.0%
! AAACAATCATCATTCATCAA+TGG + chr7_3:35661934-35661953 Msa1102540:exon 25.0%
! AACAATCATCATTCATCAAT+GGG + chr7_3:35661935-35661954 Msa1102540:exon 25.0%
!!! ACAAGAAGATAAGGTTTTAT+TGG - chr7_3:35662008-35662027 None:intergenic 25.0%
!!! ACTCTTTTGAGATAAATTAG+AGG + chr7_3:35662202-35662221 Msa1102540:intron 25.0%
! CTTTATATTGCTACTAAATG+CGG + chr7_3:35662515-35662534 Msa1102540:intron 25.0%
!! ACTCAATACAAAAGATTTTG+AGG - chr7_3:35662592-35662611 None:intergenic 25.0%
!! ACTTTTTACAAGTTCTACAA+AGG - chr7_3:35662664-35662683 None:intergenic 25.0%
!!! AAAGTTTTTCAAGAATCATG+TGG + chr7_3:35662679-35662698 Msa1102540:intron 25.0%
! ACTCTTATGATTATGATTCA+AGG + chr7_3:35662809-35662828 Msa1102540:CDS 25.0%
!! TAAGATTTTGGATTAAAGTG+TGG + chr7_3:35663066-35663085 Msa1102540:intron 25.0%
! TTAATACTTAAAGCCATGTT+AGG - chr7_3:35663157-35663176 None:intergenic 25.0%
!! TGTGTTGATATAATGTTTCT+CGG + chr7_3:35663255-35663274 Msa1102540:intron 25.0%
!! TTCTTGGTGAATATTTCTTT+TGG - chr7_3:35663455-35663474 None:intergenic 25.0%
!! CATATCATTCCTTTTATTCT+TGG - chr7_3:35663471-35663490 None:intergenic 25.0%
! TAGCCATGATTACAATTAAA+AGG - chr7_3:35663947-35663966 None:intergenic 25.0%
!! GTCAAATATTTCGATTTTCA+AGG + chr7_3:35664154-35664173 Msa1102540:intron 25.0%
!! GTAAATTAAAACAGGTCTTT+TGG + chr7_3:35664269-35664288 Msa1102540:three_prime_UTR 25.0%
! AAACAATCATCATTCATCAA+TGG + chr7_3:35661934-35661953 Msa1102540:exon 25.0%
! AACAATCATCATTCATCAAT+GGG + chr7_3:35661935-35661954 Msa1102540:exon 25.0%
!!! ACAAGAAGATAAGGTTTTAT+TGG - chr7_3:35662008-35662027 None:intergenic 25.0%
!!! ACTCTTTTGAGATAAATTAG+AGG + chr7_3:35662202-35662221 Msa1102540:intron 25.0%
! CTTTATATTGCTACTAAATG+CGG + chr7_3:35662515-35662534 Msa1102540:intron 25.0%
!! ACTCAATACAAAAGATTTTG+AGG - chr7_3:35662592-35662611 None:intergenic 25.0%
!! ACTTTTTACAAGTTCTACAA+AGG - chr7_3:35662664-35662683 None:intergenic 25.0%
!!! AAAGTTTTTCAAGAATCATG+TGG + chr7_3:35662679-35662698 Msa1102540:intron 25.0%
! ACTCTTATGATTATGATTCA+AGG + chr7_3:35662809-35662828 Msa1102540:CDS 25.0%
!! TAAGATTTTGGATTAAAGTG+TGG + chr7_3:35663066-35663085 Msa1102540:intron 25.0%
! TTAATACTTAAAGCCATGTT+AGG - chr7_3:35663157-35663176 None:intergenic 25.0%
!! TGTGTTGATATAATGTTTCT+CGG + chr7_3:35663255-35663274 Msa1102540:intron 25.0%
!! TTCTTGGTGAATATTTCTTT+TGG - chr7_3:35663455-35663474 None:intergenic 25.0%
!! CATATCATTCCTTTTATTCT+TGG - chr7_3:35663471-35663490 None:intergenic 25.0%
! TAGCCATGATTACAATTAAA+AGG - chr7_3:35663947-35663966 None:intergenic 25.0%
!! GTCAAATATTTCGATTTTCA+AGG + chr7_3:35664154-35664173 Msa1102540:intron 25.0%
!! GTAAATTAAAACAGGTCTTT+TGG + chr7_3:35664269-35664288 Msa1102540:three_prime_UTR 25.0%
ATTACAGCAACAAGAAGATA+AGG - chr7_3:35662017-35662036 None:intergenic 30.0%
TTATCTTCTTGTTGCTGTAA+TGG + chr7_3:35662016-35662035 Msa1102540:CDS 30.0%
AGAAAACAAGAGATAACATC+AGG + chr7_3:35662049-35662068 Msa1102540:CDS 30.0%
AGATAAATTAGAGGTCTTCT+TGG + chr7_3:35662211-35662230 Msa1102540:intron 30.0%
GATAAATTAGAGGTCTTCTT+GGG + chr7_3:35662212-35662231 Msa1102540:intron 30.0%
CTACTAAATGCGGAAATAAA+CGG + chr7_3:35662525-35662544 Msa1102540:intron 30.0%
! TCTTTTGTATTGAGTCCTAA+TGG + chr7_3:35662597-35662616 Msa1102540:intron 30.0%
TAAGAAATGTTACGACCATT+AGG - chr7_3:35662615-35662634 None:intergenic 30.0%
! GGAAAGAAAGCTGAATATTT+TGG - chr7_3:35662643-35662662 None:intergenic 30.0%
TCTGACACAACAATTTGAAA+AGG - chr7_3:35662743-35662762 None:intergenic 30.0%
TGCAATCTCAAGGATATAAT+AGG + chr7_3:35662836-35662855 Msa1102540:CDS 30.0%
!!! TTGGTTGTGTTTTGAAACTA+TGG - chr7_3:35662953-35662972 None:intergenic 30.0%
AGTTTCAAAACACAACCAAT+TGG + chr7_3:35662954-35662973 Msa1102540:intron 30.0%
TTGAGTTATATGTCGTACAT+CGG + chr7_3:35662988-35663007 Msa1102540:intron 30.0%
! AACTCATTGCGTTAAGATTT+TGG + chr7_3:35663054-35663073 Msa1102540:intron 30.0%
! GGATTATAACTTGTAGAGAT+TGG + chr7_3:35663276-35663295 Msa1102540:intron 30.0%
! TATTTTACTAACGTGTGGAT+TGG + chr7_3:35663391-35663410 Msa1102540:intron 30.0%
! TTGGTGAATATTTCTTTTGG+TGG - chr7_3:35663452-35663471 None:intergenic 30.0%
AAAAGGAATGATATGAAGCA+CGG + chr7_3:35663476-35663495 Msa1102540:intron 30.0%
! GTGTAATTATGTGTTGGTAT+CGG + chr7_3:35663567-35663586 Msa1102540:intron 30.0%
TGGAAGAAAACAATGTTAGA+TGG - chr7_3:35663699-35663718 None:intergenic 30.0%
TATCATGAAAGGAAAAGTCT+TGG + chr7_3:35663794-35663813 Msa1102540:CDS 30.0%
AATGATTTATTCAAGTACCC+TGG + chr7_3:35663846-35663865 Msa1102540:CDS 30.0%
ATGATTTATTCAAGTACCCT+GGG + chr7_3:35663847-35663866 Msa1102540:CDS 30.0%
CACAGTTAGATGAAAAAGTT+AGG + chr7_3:35663895-35663914 Msa1102540:CDS 30.0%
ATTACAGCAACAAGAAGATA+AGG - chr7_3:35662017-35662036 None:intergenic 30.0%
TTATCTTCTTGTTGCTGTAA+TGG + chr7_3:35662016-35662035 Msa1102540:CDS 30.0%
AGAAAACAAGAGATAACATC+AGG + chr7_3:35662049-35662068 Msa1102540:CDS 30.0%
AGATAAATTAGAGGTCTTCT+TGG + chr7_3:35662211-35662230 Msa1102540:intron 30.0%
GATAAATTAGAGGTCTTCTT+GGG + chr7_3:35662212-35662231 Msa1102540:intron 30.0%
CTACTAAATGCGGAAATAAA+CGG + chr7_3:35662525-35662544 Msa1102540:intron 30.0%
! TCTTTTGTATTGAGTCCTAA+TGG + chr7_3:35662597-35662616 Msa1102540:intron 30.0%
TAAGAAATGTTACGACCATT+AGG - chr7_3:35662615-35662634 None:intergenic 30.0%
! GGAAAGAAAGCTGAATATTT+TGG - chr7_3:35662643-35662662 None:intergenic 30.0%
TCTGACACAACAATTTGAAA+AGG - chr7_3:35662743-35662762 None:intergenic 30.0%
TGCAATCTCAAGGATATAAT+AGG + chr7_3:35662836-35662855 Msa1102540:CDS 30.0%
!!! TTGGTTGTGTTTTGAAACTA+TGG - chr7_3:35662953-35662972 None:intergenic 30.0%
AGTTTCAAAACACAACCAAT+TGG + chr7_3:35662954-35662973 Msa1102540:intron 30.0%
TTGAGTTATATGTCGTACAT+CGG + chr7_3:35662988-35663007 Msa1102540:intron 30.0%
! AACTCATTGCGTTAAGATTT+TGG + chr7_3:35663054-35663073 Msa1102540:intron 30.0%
! GGATTATAACTTGTAGAGAT+TGG + chr7_3:35663276-35663295 Msa1102540:intron 30.0%
! TATTTTACTAACGTGTGGAT+TGG + chr7_3:35663391-35663410 Msa1102540:intron 30.0%
! TTGGTGAATATTTCTTTTGG+TGG - chr7_3:35663452-35663471 None:intergenic 30.0%
AAAAGGAATGATATGAAGCA+CGG + chr7_3:35663476-35663495 Msa1102540:intron 30.0%
! GTGTAATTATGTGTTGGTAT+CGG + chr7_3:35663567-35663586 Msa1102540:intron 30.0%
TGGAAGAAAACAATGTTAGA+TGG - chr7_3:35663699-35663718 None:intergenic 30.0%
TATCATGAAAGGAAAAGTCT+TGG + chr7_3:35663794-35663813 Msa1102540:CDS 30.0%
AATGATTTATTCAAGTACCC+TGG + chr7_3:35663846-35663865 Msa1102540:CDS 30.0%
ATGATTTATTCAAGTACCCT+GGG + chr7_3:35663847-35663866 Msa1102540:CDS 30.0%
CACAGTTAGATGAAAAAGTT+AGG + chr7_3:35663895-35663914 Msa1102540:CDS 30.0%
AATCATCATTCATCAATGGG+AGG + chr7_3:35661938-35661957 Msa1102540:exon 35.0%
AAACAAGAGATAACATCAGG+TGG + chr7_3:35662052-35662071 Msa1102540:CDS 35.0%
GGTTAATGTAGTCGAAATTG+CGG + chr7_3:35662546-35662565 Msa1102540:intron 35.0%
GATCTGTTGATCTATGATTG+TGG - chr7_3:35662785-35662804 None:intergenic 35.0%
TATCTTCTGATGAAGCCATT+TGG + chr7_3:35663308-35663327 Msa1102540:CDS 35.0%
ATCTTCTGATGAAGCCATTT+GGG + chr7_3:35663309-35663328 Msa1102540:CDS 35.0%
TAAGAAATGTGTTGCATCAG+AGG + chr7_3:35663341-35663360 Msa1102540:CDS 35.0%
GTAAAATACAGACCTGAATC+AGG - chr7_3:35663379-35663398 None:intergenic 35.0%
! GTCTGTATTTTACTAACGTG+TGG + chr7_3:35663386-35663405 Msa1102540:intron 35.0%
AATGATATGAAGCACGGATA+CGG + chr7_3:35663482-35663501 Msa1102540:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG - chr7_3:35663532-35663551 None:intergenic 35.0%
TCAGCGTAGAAATCTTAAAC+TGG + chr7_3:35663763-35663782 Msa1102540:CDS 35.0%
!! AACAGGTCTTTTGGTTAGTA+TGG + chr7_3:35664278-35664297 Msa1102540:three_prime_UTR 35.0%
AATCATCATTCATCAATGGG+AGG + chr7_3:35661938-35661957 Msa1102540:exon 35.0%
AAACAAGAGATAACATCAGG+TGG + chr7_3:35662052-35662071 Msa1102540:CDS 35.0%
GGTTAATGTAGTCGAAATTG+CGG + chr7_3:35662546-35662565 Msa1102540:intron 35.0%
GATCTGTTGATCTATGATTG+TGG - chr7_3:35662785-35662804 None:intergenic 35.0%
TATCTTCTGATGAAGCCATT+TGG + chr7_3:35663308-35663327 Msa1102540:CDS 35.0%
ATCTTCTGATGAAGCCATTT+GGG + chr7_3:35663309-35663328 Msa1102540:CDS 35.0%
TAAGAAATGTGTTGCATCAG+AGG + chr7_3:35663341-35663360 Msa1102540:CDS 35.0%
GTAAAATACAGACCTGAATC+AGG - chr7_3:35663379-35663398 None:intergenic 35.0%
! GTCTGTATTTTACTAACGTG+TGG + chr7_3:35663386-35663405 Msa1102540:intron 35.0%
AATGATATGAAGCACGGATA+CGG + chr7_3:35663482-35663501 Msa1102540:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG - chr7_3:35663532-35663551 None:intergenic 35.0%
TCAGCGTAGAAATCTTAAAC+TGG + chr7_3:35663763-35663782 Msa1102540:CDS 35.0%
TTATTGGCGTTACTCAACTG+AGG - chr7_3:35661992-35662011 None:intergenic 40.0%
GATGGAACAGTGTCAAATAC+AGG - chr7_3:35662091-35662110 None:intergenic 40.0%
TGACACTGTTCCATCTCAAA+TGG + chr7_3:35662096-35662115 Msa1102540:CDS 40.0%
TCCATCTCAAATGGAAGTTG+AGG + chr7_3:35662105-35662124 Msa1102540:CDS 40.0%
TCCTCAACTTCCATTTGAGA+TGG - chr7_3:35662109-35662128 None:intergenic 40.0%
TTGCGGTTATGTTGTCATTG+CGG + chr7_3:35662563-35662582 Msa1102540:intron 40.0%
TCAAGGATTGTGCAATCTCA+AGG + chr7_3:35662826-35662845 Msa1102540:CDS 40.0%
AAGAGAGAAACCTTAACAGC+AGG - chr7_3:35662895-35662914 None:intergenic 40.0%
TCAAACTTGCACACACCAAT+TGG - chr7_3:35662972-35662991 None:intergenic 40.0%
TTATATGTCGTACATCGGAC+AGG + chr7_3:35662993-35663012 Msa1102540:intron 40.0%
TCTTATGACAGCATCCCAAA+TGG - chr7_3:35663326-35663345 None:intergenic 40.0%
! TTATGTGTTGGTATCGGACA+CGG + chr7_3:35663573-35663592 Msa1102540:intron 40.0%
! GATTAAGCGTGTCTTGTTGT+TGG - chr7_3:35663606-35663625 None:intergenic 40.0%
! GTTTTCTTCCATCCAGCTAA+AGG + chr7_3:35663708-35663727 Msa1102540:intron 40.0%
! GTCTTTTACCTTTAGCTGGA+TGG - chr7_3:35663719-35663738 None:intergenic 40.0%
! TGAGGTCTTTTACCTTTAGC+TGG - chr7_3:35663723-35663742 None:intergenic 40.0%
! TCTCTTTGTTCTGAACTCTG+AGG - chr7_3:35663741-35663760 None:intergenic 40.0%
CTGTTGCATTATCAATCCCA+GGG - chr7_3:35663866-35663885 None:intergenic 40.0%
TTATTGGCGTTACTCAACTG+AGG - chr7_3:35661992-35662011 None:intergenic 40.0%
GATGGAACAGTGTCAAATAC+AGG - chr7_3:35662091-35662110 None:intergenic 40.0%
TGACACTGTTCCATCTCAAA+TGG + chr7_3:35662096-35662115 Msa1102540:CDS 40.0%
TCCATCTCAAATGGAAGTTG+AGG + chr7_3:35662105-35662124 Msa1102540:CDS 40.0%
TCCTCAACTTCCATTTGAGA+TGG - chr7_3:35662109-35662128 None:intergenic 40.0%
TTGCGGTTATGTTGTCATTG+CGG + chr7_3:35662563-35662582 Msa1102540:intron 40.0%
TCAAGGATTGTGCAATCTCA+AGG + chr7_3:35662826-35662845 Msa1102540:CDS 40.0%
AAGAGAGAAACCTTAACAGC+AGG - chr7_3:35662895-35662914 None:intergenic 40.0%
TCAAACTTGCACACACCAAT+TGG - chr7_3:35662972-35662991 None:intergenic 40.0%
TTATATGTCGTACATCGGAC+AGG + chr7_3:35662993-35663012 Msa1102540:intron 40.0%
TCTTATGACAGCATCCCAAA+TGG - chr7_3:35663326-35663345 None:intergenic 40.0%
! TTATGTGTTGGTATCGGACA+CGG + chr7_3:35663573-35663592 Msa1102540:intron 40.0%
! GATTAAGCGTGTCTTGTTGT+TGG - chr7_3:35663606-35663625 None:intergenic 40.0%
! GTTTTCTTCCATCCAGCTAA+AGG + chr7_3:35663708-35663727 Msa1102540:intron 40.0%
! GTCTTTTACCTTTAGCTGGA+TGG - chr7_3:35663719-35663738 None:intergenic 40.0%
! TGAGGTCTTTTACCTTTAGC+TGG - chr7_3:35663723-35663742 None:intergenic 40.0%
! TCTCTTTGTTCTGAACTCTG+AGG - chr7_3:35663741-35663760 None:intergenic 40.0%
CTGTTGCATTATCAATCCCA+GGG - chr7_3:35663866-35663885 None:intergenic 40.0%
CATCATTCATCAATGGGAGG+TGG + chr7_3:35661941-35661960 Msa1102540:exon 45.0%
AACAAGACACGCTTAATCCG+AGG + chr7_3:35663608-35663627 Msa1102540:intron 45.0%
TACGAAGAATGGACACTCCT+CGG - chr7_3:35663628-35663647 None:intergenic 45.0%
CCTGTTGCATTATCAATCCC+AGG - chr7_3:35663867-35663886 None:intergenic 45.0%
!! CCTGGGATTGATAATGCAAC+AGG + chr7_3:35663864-35663883 Msa1102540:CDS 45.0%
!! AGAATGCTTAAAGAGTGCCC+CGG - chr7_3:35664108-35664127 None:intergenic 45.0%
CATCATTCATCAATGGGAGG+TGG + chr7_3:35661941-35661960 Msa1102540:exon 45.0%
AACAAGACACGCTTAATCCG+AGG + chr7_3:35663608-35663627 Msa1102540:intron 45.0%
TACGAAGAATGGACACTCCT+CGG - chr7_3:35663628-35663647 None:intergenic 45.0%
CCTGTTGCATTATCAATCCC+AGG - chr7_3:35663867-35663886 None:intergenic 45.0%
!! CCTGGGATTGATAATGCAAC+AGG + chr7_3:35663864-35663883 Msa1102540:CDS 45.0%
!! AGAATGCTTAAAGAGTGCCC+CGG - chr7_3:35664108-35664127 None:intergenic 45.0%
!!! ATATGTATTATTTAAAATTA+AGG + chr7_3:35664064-35664083 Msa1102540:intron 5.0%
!!! TATGTATTATTTAAAATTAA+GGG + chr7_3:35664065-35664084 Msa1102540:intron 5.0%
!!! TTAATTTACTTTTAATTTTA+GGG - chr7_3:35664258-35664277 None:intergenic 5.0%
!!! TTTAATTTACTTTTAATTTT+AGG - chr7_3:35664259-35664278 None:intergenic 5.0%
!!! ATATGTATTATTTAAAATTA+AGG + chr7_3:35664064-35664083 Msa1102540:intron 5.0%
!!! TATGTATTATTTAAAATTAA+GGG + chr7_3:35664065-35664084 Msa1102540:intron 5.0%
!!! TTAATTTACTTTTAATTTTA+GGG - chr7_3:35664258-35664277 None:intergenic 5.0%
!!! TTTAATTTACTTTTAATTTT+AGG - chr7_3:35664259-35664278 None:intergenic 5.0%
GCAAGCTGATCCTGCTGTTA+AGG + chr7_3:35662882-35662901 Msa1102540:CDS 50.0%
TCGTACATCGGACAGGAAAG+TGG + chr7_3:35663000-35663019 Msa1102540:intron 50.0%
TACATCGGACAGGAAAGTGG+AGG + chr7_3:35663003-35663022 Msa1102540:intron 50.0%
TGGTGTCTCTCTCACTTGTG+TGG + chr7_3:35663086-35663105 Msa1102540:intron 50.0%
ACTCCTCTCGTGACCTAACA+TGG + chr7_3:35663141-35663160 Msa1102540:intron 50.0%
AAGCCATGTTAGGTCACGAG+AGG - chr7_3:35663147-35663166 None:intergenic 50.0%
TGTGTTGCATCAGAGGCTTC+TGG + chr7_3:35663348-35663367 Msa1102540:CDS 50.0%
!! CTTCTGGAGTTGCCTGATTC+AGG + chr7_3:35663364-35663383 Msa1102540:CDS 50.0%
ATGAAGCACGGATACGGACA+CGG + chr7_3:35663488-35663507 Msa1102540:intron 50.0%
!! GGTCTTGTTAACAAGTGCCC+CGG + chr7_3:35664086-35664105 Msa1102540:intron 50.0%
! GTCTTGTTAACAAGTGCCCC+GGG + chr7_3:35664087-35664106 Msa1102540:intron 50.0%
TCTTGTTAACAAGTGCCCCG+GGG + chr7_3:35664088-35664107 Msa1102540:intron 50.0%
!! AATGCTTAAAGAGTGCCCCG+GGG - chr7_3:35664106-35664125 None:intergenic 50.0%
!! GAATGCTTAAAGAGTGCCCC+GGG - chr7_3:35664107-35664126 None:intergenic 50.0%
!! ATGGGTCTTAAAGAGTGCCC+CGG + chr7_3:35664214-35664233 Msa1102540:intron 50.0%
AAATGTTAACGAGTGCCCCC+GGG - chr7_3:35664235-35664254 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG - chr7_3:35664236-35664255 None:intergenic 50.0%
GCAAGCTGATCCTGCTGTTA+AGG + chr7_3:35662882-35662901 Msa1102540:CDS 50.0%
TCGTACATCGGACAGGAAAG+TGG + chr7_3:35663000-35663019 Msa1102540:intron 50.0%
TACATCGGACAGGAAAGTGG+AGG + chr7_3:35663003-35663022 Msa1102540:intron 50.0%
TGGTGTCTCTCTCACTTGTG+TGG + chr7_3:35663086-35663105 Msa1102540:intron 50.0%
ACTCCTCTCGTGACCTAACA+TGG + chr7_3:35663141-35663160 Msa1102540:intron 50.0%
AAGCCATGTTAGGTCACGAG+AGG - chr7_3:35663147-35663166 None:intergenic 50.0%
TGTGTTGCATCAGAGGCTTC+TGG + chr7_3:35663348-35663367 Msa1102540:CDS 50.0%
!! CTTCTGGAGTTGCCTGATTC+AGG + chr7_3:35663364-35663383 Msa1102540:CDS 50.0%
ATGAAGCACGGATACGGACA+CGG + chr7_3:35663488-35663507 Msa1102540:intron 50.0%
!! GGTCTTGTTAACAAGTGCCC+CGG + chr7_3:35664086-35664105 Msa1102540:intron 50.0%
! GTCTTGTTAACAAGTGCCCC+GGG + chr7_3:35664087-35664106 Msa1102540:intron 50.0%
TCTTGTTAACAAGTGCCCCG+GGG + chr7_3:35664088-35664107 Msa1102540:intron 50.0%
!! AATGCTTAAAGAGTGCCCCG+GGG - chr7_3:35664106-35664125 None:intergenic 50.0%
!! GAATGCTTAAAGAGTGCCCC+GGG - chr7_3:35664107-35664126 None:intergenic 50.0%
!! ATGGGTCTTAAAGAGTGCCC+CGG + chr7_3:35664214-35664233 Msa1102540:intron 50.0%
AAATGTTAACGAGTGCCCCC+GGG - chr7_3:35664235-35664254 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG - chr7_3:35664236-35664255 None:intergenic 50.0%
ACTTGTGTGGTTGCTCTGCC+TGG + chr7_3:35663099-35663118 Msa1102540:intron 55.0%
TGGTTGCTCTGCCTGGATGT+GGG + chr7_3:35663106-35663125 Msa1102540:intron 55.0%
TTAGGTCACGAGAGGAGTCC+GGG - chr7_3:35663139-35663158 None:intergenic 55.0%
GTTAGGTCACGAGAGGAGTC+CGG - chr7_3:35663140-35663159 None:intergenic 55.0%
!! GGTGTCGGCATGTCAGTGTT+CGG - chr7_3:35663517-35663536 None:intergenic 55.0%
!! TGGGTCTTAAAGAGTGCCCC+GGG + chr7_3:35664215-35664234 Msa1102540:intron 55.0%
AATGTTAACGAGTGCCCCCG+GGG - chr7_3:35664234-35664253 None:intergenic 55.0%
ACTTGTGTGGTTGCTCTGCC+TGG + chr7_3:35663099-35663118 Msa1102540:intron 55.0%
TGGTTGCTCTGCCTGGATGT+GGG + chr7_3:35663106-35663125 Msa1102540:intron 55.0%
TTAGGTCACGAGAGGAGTCC+GGG - chr7_3:35663139-35663158 None:intergenic 55.0%
GTTAGGTCACGAGAGGAGTC+CGG - chr7_3:35663140-35663159 None:intergenic 55.0%
!! GGTGTCGGCATGTCAGTGTT+CGG - chr7_3:35663517-35663536 None:intergenic 55.0%
!! TGGGTCTTAAAGAGTGCCCC+GGG + chr7_3:35664215-35664234 Msa1102540:intron 55.0%
AATGTTAACGAGTGCCCCCG+GGG - chr7_3:35664234-35664253 None:intergenic 55.0%
GTGGTTGCTCTGCCTGGATG+TGG + chr7_3:35663105-35663124 Msa1102540:intron 60.0%
TTGCTCTGCCTGGATGTGGG+TGG + chr7_3:35663109-35663128 Msa1102540:intron 60.0%
TAGGTCACGAGAGGAGTCCG+GGG - chr7_3:35663138-35663157 None:intergenic 60.0%
!! GGGTCTTAAAGAGTGCCCCG+GGG + chr7_3:35664216-35664235 Msa1102540:intron 60.0%
!! GGTCTTAAAGAGTGCCCCGG+GGG + chr7_3:35664217-35664236 Msa1102540:intron 60.0%
GTGGTTGCTCTGCCTGGATG+TGG + chr7_3:35663105-35663124 Msa1102540:intron 60.0%
TTGCTCTGCCTGGATGTGGG+TGG + chr7_3:35663109-35663128 Msa1102540:intron 60.0%
TAGGTCACGAGAGGAGTCCG+GGG - chr7_3:35663138-35663157 None:intergenic 60.0%
!! GGGTCTTAAAGAGTGCCCCG+GGG + chr7_3:35664216-35664235 Msa1102540:intron 60.0%
!! GGTCTTAAAGAGTGCCCCGG+GGG + chr7_3:35664217-35664236 Msa1102540:intron 60.0%
AGGTCACGAGAGGAGTCCGG+GGG - chr7_3:35663137-35663156 None:intergenic 65.0%
AGGTCACGAGAGGAGTCCGG+GGG - chr7_3:35663137-35663156 None:intergenic 65.0%
CTGGATGTGGGTGGTCCCCC+CGG + chr7_3:35663118-35663137 Msa1102540:intron 70.0%
GGTCACGAGAGGAGTCCGGG+GGG - chr7_3:35663136-35663155 None:intergenic 70.0%
CTGGATGTGGGTGGTCCCCC+CGG + chr7_3:35663118-35663137 Msa1102540:intron 70.0%
GGTCACGAGAGGAGTCCGGG+GGG - chr7_3:35663136-35663155 None:intergenic 70.0%
CGGGGGGACCACCCACATCC+AGG - chr7_3:35663120-35663139 None:intergenic 75.0%
CGGGGGGACCACCCACATCC+AGG - chr7_3:35663120-35663139 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 35661927 35664298 35661927 ID=Msa1102540;Name=Msa1102540
chr7_3 mRNA 35661927 35664298 35661927 ID=Msa1102540-mRNA-1;Parent=Msa1102540;Name=Msa1102540-mRNA-1;_AED=0.23;_eAED=0.23;_QI=26|1|1|1|0.75|0.6|5|123|232
chr7_3 exon 35661927 35662149 35661927 ID=Msa1102540-mRNA-1:exon:7481;Parent=Msa1102540-mRNA-1
chr7_3 exon 35662762 35662903 35662762 ID=Msa1102540-mRNA-1:exon:7482;Parent=Msa1102540-mRNA-1
chr7_3 exon 35663292 35663385 35663292 ID=Msa1102540-mRNA-1:exon:7483;Parent=Msa1102540-mRNA-1
chr7_3 exon 35663724 35664074 35663724 ID=Msa1102540-mRNA-1:exon:7484;Parent=Msa1102540-mRNA-1
chr7_3 exon 35664261 35664298 35664261 ID=Msa1102540-mRNA-1:exon:7485;Parent=Msa1102540-mRNA-1
chr7_3 five_prime_UTR 35661927 35661952 35661927 ID=Msa1102540-mRNA-1:five_prime_utr;Parent=Msa1102540-mRNA-1
chr7_3 CDS 35661953 35662149 35661953 ID=Msa1102540-mRNA-1:cds;Parent=Msa1102540-mRNA-1
chr7_3 CDS 35662762 35662903 35662762 ID=Msa1102540-mRNA-1:cds;Parent=Msa1102540-mRNA-1
chr7_3 CDS 35663292 35663385 35663292 ID=Msa1102540-mRNA-1:cds;Parent=Msa1102540-mRNA-1
chr7_3 CDS 35663724 35663989 35663724 ID=Msa1102540-mRNA-1:cds;Parent=Msa1102540-mRNA-1
chr7_3 three_prime_UTR 35663990 35664074 35663990 ID=Msa1102540-mRNA-1:three_prime_utr;Parent=Msa1102540-mRNA-1
chr7_3 three_prime_UTR 35664261 35664298 35664261 ID=Msa1102540-mRNA-1:three_prime_utr;Parent=Msa1102540-mRNA-1
Gene Sequence

>Msa1102540

ATGGGAGGTGGAACTATGCATATTGATCATCTTGTACCTCAGTTGAGTAACGCCAATAAAACCTTATCTTCTTGTTGCTGTAATGGTCAGTTCTGCAGAAAACAAGAGATAACATCAGGTGGTAATCTCTATACTCCTGTATTTGACACTGTTCCATCTCAAATGGAAGTTGAGGATGCAATTTCAGCTCTTCAAGAATTTATGAAAGCAGTATCAACCACAATCATAGATCAACAGATCGCAGACTCTTATGATTATGATTCAAGGATTGTGCAATCTCAAGGATATAATAGGCTTTACAATGCTCTTCAGTTGCTGCAAGCTGATCCTGCTGTTAAGAGATTGGTGATTTCACTATCTTCTGATGAAGCCATTTGGGATGCTGTCATAAGAAATGTGTTGCATCAGAGGCTTCTGGAGTTGCCTGATTCAGCTAAAGGTAAAAGACCTCAGAGTTCAGAACAAAGAGAGATCAGCGTAGAAATCTTAAACTGGATATTTTATATCATGAAAGGAAAAGTCTTGGAACTGATACAAAGTTTTCAGTCACTTATGAATGATTTATTCAAGTACCCTGGGATTGATAATGCAACAGGAGATACATCACAGTTAGATGAAAAAGTTAGGTCATCTACACTTCTTTCCATTGTTATCCTTTTAATTGTAATCATGGCTAGATATCAAAGTCGTCAAGTCTAA

Protein sequence

>Msa1102540

MGGGTMHIDHLVPQLSNANKTLSSCCCNGQFCRKQEITSGGNLYTPVFDTVPSQMEVEDAISALQEFMKAVSTTIIDQQIADSYDYDSRIVQSQGYNRLYNALQLLQADPAVKRLVISLSSDEAIWDAVIRNVLHQRLLELPDSAKGKRPQSSEQREISVEILNWIFYIMKGKVLELIQSFQSLMNDLFKYPGIDNATGDTSQLDEKVRSSTLLSIVILLIVIMARYQSRQV*