Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126040 | XP_013468849.2 | 94.964 | 278 | 7 | 6 | 1 | 277 | 1 | 272 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126040 | sp|Q8LAP8|DOF46_ARATH | 39.481 | 347 | 134 | 13 | 1 | 277 | 1 | 341 | 3.88e-55 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126040 | A0A072VXW2 | 94.964 | 278 | 7 | 6 | 1 | 277 | 1 | 272 | 0.0 | 527 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0126040 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0126040 | 0.845238 | 4.601281e-59 | -8.615850e-47 |
| Msa0001940 | Msa0126040 | 0.813719 | 2.219588e-51 | -8.615850e-47 |
| Msa0001960 | Msa0126040 | 0.820374 | 7.095902e-53 | -8.615850e-47 |
| Msa0002580 | Msa0126040 | 0.800565 | 1.357944e-48 | -8.615850e-47 |
| Msa0017930 | Msa0126040 | 0.825409 | 4.762323e-54 | -8.615850e-47 |
| Msa0017950 | Msa0126040 | 0.810299 | 1.234778e-50 | -8.615850e-47 |
| Msa0030990 | Msa0126040 | 0.858955 | 5.771314e-63 | -8.615850e-47 |
| Msa0074600 | Msa0126040 | 0.933378 | 2.055441e-95 | -8.615850e-47 |
| Msa0081020 | Msa0126040 | 0.852561 | 4.257309e-61 | -8.615850e-47 |
| Msa0089980 | Msa0126040 | 0.807180 | 5.733056e-50 | -8.615850e-47 |
| Msa0090010 | Msa0126040 | 0.804044 | 2.608670e-49 | -8.615850e-47 |
| Msa0103770 | Msa0126040 | 0.803586 | 3.248127e-49 | -8.615850e-47 |
| Msa0108410 | Msa0126040 | 0.841385 | 4.905492e-58 | -8.615850e-47 |
| Msa0126040 | Msa0191890 | 0.802252 | 6.126662e-49 | -8.615850e-47 |
| Msa0126040 | Msa0225100 | 0.824100 | 9.690665e-54 | -8.615850e-47 |
| Msa0126040 | Msa0237210 | 0.804708 | 1.897522e-49 | -8.615850e-47 |
| Msa0126040 | Msa0244640 | 0.846378 | 2.255095e-59 | -8.615850e-47 |
| Msa0126040 | Msa0251710 | 0.817981 | 2.487676e-52 | -8.615850e-47 |
| Msa0126040 | Msa0266180 | 0.824968 | 6.053249e-54 | -8.615850e-47 |
| Msa0126040 | Msa0283330 | 0.821637 | 3.631070e-53 | -8.615850e-47 |
| Msa0126040 | Msa0287740 | 0.822620 | 2.149319e-53 | -8.615850e-47 |
| Msa0126040 | Msa0290720 | 0.811037 | 8.554314e-51 | -8.615850e-47 |
| Msa0126040 | Msa0302870 | 0.804132 | 2.501863e-49 | -8.615850e-47 |
| Msa0126040 | Msa0312530 | 0.806594 | 7.624265e-50 | -8.615850e-47 |
| Msa0126040 | Msa0321620 | 0.818567 | 1.832657e-52 | -8.615850e-47 |
| Msa0126040 | Msa0336560 | 0.809955 | 1.464757e-50 | -8.615850e-47 |
| Msa0126040 | Msa0403640 | 0.818897 | 1.542553e-52 | -8.615850e-47 |
| Msa0126040 | Msa0434290 | 0.802802 | 4.719080e-49 | -8.615850e-47 |
| Msa0126040 | Msa0436910 | 0.810948 | 8.939615e-51 | -8.615850e-47 |
| Msa0126040 | Msa0448340 | 0.801085 | 1.063579e-48 | -8.615850e-47 |
| Msa0126040 | Msa0519750 | 0.820745 | 5.831532e-53 | -8.615850e-47 |
| Msa0126040 | Msa0519820 | 0.816628 | 5.012534e-52 | -8.615850e-47 |
| Msa0126040 | Msa0519830 | 0.825704 | 4.053698e-54 | -8.615850e-47 |
| Msa0126040 | Msa0544660 | 0.809087 | 2.249718e-50 | -8.615850e-47 |
| Msa0126040 | Msa0549360 | 0.812399 | 4.324198e-51 | -8.615850e-47 |
| Msa0126040 | Msa0581470 | 0.813929 | 1.995228e-51 | -8.615850e-47 |
| Msa0126040 | Msa0622810 | 0.809886 | 1.515990e-50 | -8.615850e-47 |
| Msa0126040 | Msa0624420 | 0.802085 | 6.632860e-49 | -8.615850e-47 |
| Msa0126040 | Msa0658580 | 0.808095 | 3.665441e-50 | -8.615850e-47 |
| Msa0126040 | Msa0703540 | 0.809558 | 1.782898e-50 | -8.615850e-47 |
| Msa0126040 | Msa0709270 | 0.848397 | 6.290073e-60 | -8.615850e-47 |
| Msa0126040 | Msa0729150 | 0.815915 | 7.238429e-52 | -8.615850e-47 |
| Msa0126040 | Msa0729270 | 0.816716 | 4.792285e-52 | -8.615850e-47 |
| Msa0126040 | Msa0733010 | 0.808451 | 3.077914e-50 | -8.615850e-47 |
| Msa0126040 | Msa0752450 | 0.816728 | 4.761180e-52 | -8.615850e-47 |
| Msa0126040 | Msa0778590 | 0.800721 | 1.262051e-48 | -8.615850e-47 |
| Msa0126040 | Msa0795070 | 0.804362 | 2.240739e-49 | -8.615850e-47 |
| Msa0126040 | Msa0799970 | 0.800146 | 1.652595e-48 | -8.615850e-47 |
| Msa0126040 | Msa0833530 | 0.801992 | 6.930944e-49 | -8.615850e-47 |
| Msa0126040 | Msa0855870 | 0.836149 | 1.107980e-56 | -8.615850e-47 |
| Msa0126040 | Msa0875290 | 0.811963 | 5.381078e-51 | -8.615850e-47 |
| Msa0126040 | Msa0935820 | 0.817170 | 3.789097e-52 | -8.615850e-47 |
| Msa0126040 | Msa0945490 | 0.805991 | 1.021884e-49 | -8.615850e-47 |
| Msa0126040 | Msa0967870 | 0.829296 | 5.573266e-55 | -8.615850e-47 |
| Msa0126040 | Msa1021210 | 0.802433 | 5.622782e-49 | -8.615850e-47 |
| Msa0126040 | Msa1023500 | 0.801793 | 7.612686e-49 | -8.615850e-47 |
| Msa0126040 | Msa1027990 | 0.819206 | 1.311801e-52 | -8.615850e-47 |
| Msa0126040 | Msa1034500 | 0.831799 | 1.359756e-55 | -8.615850e-47 |
| Msa0126040 | Msa1036610 | 0.804022 | 2.637142e-49 | -8.615850e-47 |
| Msa0126040 | Msa1085330 | 0.813542 | 2.428249e-51 | -8.615850e-47 |
| Msa0126040 | Msa1096960 | 0.805091 | 1.578285e-49 | -8.615850e-47 |
| Msa0126040 | Msa1132470 | 0.821391 | 4.139411e-53 | -8.615850e-47 |
| Msa0126040 | Msa1140220 | 0.809829 | 1.559222e-50 | -8.615850e-47 |
| Msa0126040 | Msa1147740 | 0.820612 | 6.257874e-53 | -8.615850e-47 |
| Msa0126040 | Msa1155900 | 0.803488 | 3.404370e-49 | -8.615850e-47 |
| Msa0126040 | Msa1161810 | 0.817036 | 4.061078e-52 | -8.615850e-47 |
| Msa0126040 | Msa1170760 | 0.806587 | 7.650956e-50 | -8.615850e-47 |
| Msa0126040 | Msa1188180 | 0.801274 | 9.727144e-49 | -8.615850e-47 |
| Msa0126040 | Msa1226460 | 0.845225 | 4.638815e-59 | -8.615850e-47 |
| Msa0126040 | Msa1238820 | 0.808556 | 2.922107e-50 | -8.615850e-47 |
| Msa0126040 | Msa1265650 | 0.802432 | 5.626404e-49 | -8.615850e-47 |
| Msa0126040 | Msa1303560 | 0.801492 | 8.777319e-49 | -8.615850e-47 |
| Msa0126040 | Msa1323410 | 0.810298 | 1.235899e-50 | -8.615850e-47 |
| Msa0126040 | Msa1345810 | 0.834959 | 2.216181e-56 | -8.615850e-47 |
| Msa0126040 | Msa1348090 | 0.827596 | 1.433430e-54 | -8.615850e-47 |
| Msa0126040 | Msa1355450 | 0.934220 | 5.660512e-96 | -8.615850e-47 |
| Msa0126040 | Msa1382300 | 0.801752 | 7.762638e-49 | -8.615850e-47 |
| Msa0126040 | Msa1401270 | 0.800525 | 1.383578e-48 | -8.615850e-47 |
| Msa0126040 | Msa1450100 | 0.805328 | 1.407922e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126040 | MtrunA17_Chr1g0188851 | 94.964 | 278 | 7 | 6 | 1 | 277 | 1 | 272 | 0.0 | 527 |
| Msa0126040 | MtrunA17_Chr3g0127201 | 44.599 | 287 | 109 | 13 | 31 | 277 | 14 | 290 | 1.07e-59 | 191 |
| Msa0126040 | MtrunA17_Chr8g0346551 | 44.056 | 286 | 110 | 14 | 22 | 277 | 4 | 269 | 3.31e-58 | 187 |
| Msa0126040 | MtrunA17_Chr2g0326001 | 75.000 | 72 | 18 | 0 | 27 | 98 | 23 | 94 | 1.50e-35 | 129 |
| Msa0126040 | MtrunA17_Chr3g0117601 | 34.122 | 296 | 142 | 15 | 26 | 276 | 41 | 328 | 4.57e-34 | 126 |
| Msa0126040 | MtrunA17_Chr4g0030051 | 47.445 | 137 | 65 | 2 | 26 | 155 | 23 | 159 | 2.97e-33 | 122 |
| Msa0126040 | MtrunA17_Chr8g0367161 | 66.667 | 72 | 24 | 0 | 33 | 104 | 21 | 92 | 2.30e-29 | 113 |
| Msa0126040 | MtrunA17_Chr4g0031411 | 66.667 | 72 | 18 | 1 | 41 | 106 | 72 | 143 | 5.11e-29 | 112 |
| Msa0126040 | MtrunA17_Chr1g0177251 | 57.292 | 96 | 31 | 2 | 38 | 125 | 6 | 99 | 7.07e-29 | 111 |
| Msa0126040 | MtrunA17_Chr8g0374111 | 54.444 | 90 | 36 | 1 | 29 | 113 | 14 | 103 | 7.27e-29 | 109 |
| Msa0126040 | MtrunA17_Chr3g0126201 | 60.976 | 82 | 24 | 1 | 24 | 105 | 39 | 112 | 9.97e-29 | 112 |
| Msa0126040 | MtrunA17_Chr8g0341671 | 65.823 | 79 | 23 | 2 | 26 | 104 | 5 | 79 | 1.02e-28 | 108 |
| Msa0126040 | MtrunA17_Chr3g0092111 | 49.524 | 105 | 49 | 2 | 46 | 146 | 138 | 242 | 1.02e-28 | 114 |
| Msa0126040 | MtrunA17_Chr2g0328021 | 53.261 | 92 | 43 | 0 | 44 | 135 | 62 | 153 | 1.25e-28 | 110 |
| Msa0126040 | MtrunA17_Chr7g0223311 | 74.194 | 62 | 16 | 0 | 43 | 104 | 76 | 137 | 1.45e-28 | 112 |
| Msa0126040 | MtrunA17_Chr8g0374251 | 61.972 | 71 | 27 | 0 | 39 | 109 | 63 | 133 | 5.76e-28 | 110 |
| Msa0126040 | MtrunA17_Chr2g0282441 | 67.692 | 65 | 16 | 1 | 31 | 95 | 17 | 76 | 6.79e-28 | 109 |
| Msa0126040 | MtrunA17_Chr4g0047001 | 59.756 | 82 | 28 | 1 | 46 | 122 | 57 | 138 | 2.10e-27 | 109 |
| Msa0126040 | MtrunA17_Chr4g0010151 | 70.690 | 58 | 17 | 0 | 41 | 98 | 79 | 136 | 3.30e-27 | 108 |
| Msa0126040 | MtrunA17_Chr5g0411951 | 74.074 | 54 | 14 | 0 | 41 | 94 | 40 | 93 | 3.40e-26 | 105 |
| Msa0126040 | MtrunA17_Chr4g0061761 | 75.472 | 53 | 13 | 0 | 42 | 94 | 38 | 90 | 6.13e-26 | 103 |
| Msa0126040 | MtrunA17_Chr2g0308011 | 78.000 | 50 | 11 | 0 | 43 | 92 | 36 | 85 | 1.06e-25 | 100 |
| Msa0126040 | MtrunA17_Chr2g0282051 | 57.971 | 69 | 28 | 1 | 30 | 98 | 32 | 99 | 1.51e-25 | 102 |
| Msa0126040 | MtrunA17_Chr7g0237921 | 50.000 | 82 | 39 | 1 | 17 | 98 | 51 | 130 | 3.40e-25 | 102 |
| Msa0126040 | MtrunA17_Chr4g0042481 | 57.971 | 69 | 29 | 0 | 28 | 96 | 106 | 174 | 1.73e-24 | 102 |
| Msa0126040 | MtrunA17_Chr2g0282511 | 76.000 | 50 | 12 | 0 | 43 | 92 | 44 | 93 | 2.00e-24 | 99.8 |
| Msa0126040 | MtrunA17_Chr7g0217581 | 35.556 | 180 | 80 | 5 | 44 | 190 | 232 | 408 | 2.45e-24 | 102 |
| Msa0126040 | MtrunA17_Chr6g0453321 | 48.913 | 92 | 44 | 3 | 38 | 129 | 130 | 218 | 3.07e-24 | 101 |
| Msa0126040 | MtrunA17_Chr7g0254161 | 44.643 | 112 | 54 | 3 | 24 | 134 | 85 | 189 | 1.18e-23 | 99.4 |
| Msa0126040 | MtrunA17_Chr2g0283811 | 63.636 | 55 | 20 | 0 | 41 | 95 | 44 | 98 | 1.82e-23 | 93.6 |
| Msa0126040 | MtrunA17_Chr4g0047761 | 66.667 | 57 | 18 | 1 | 42 | 98 | 70 | 125 | 1.95e-23 | 97.4 |
| Msa0126040 | MtrunA17_Chr5g0417571 | 56.944 | 72 | 30 | 1 | 33 | 104 | 128 | 198 | 2.97e-23 | 97.1 |
| Msa0126040 | MtrunA17_Chr8g0355261 | 56.452 | 62 | 27 | 0 | 38 | 99 | 112 | 173 | 3.55e-23 | 98.2 |
| Msa0126040 | MtrunA17_Chr6g0460721 | 50.000 | 80 | 35 | 1 | 22 | 96 | 62 | 141 | 1.51e-22 | 95.1 |
| Msa0126040 | MtrunA17_Chr6g0460731 | 47.561 | 82 | 37 | 2 | 15 | 96 | 73 | 148 | 2.00e-22 | 95.1 |
| Msa0126040 | MtrunA17_Chr5g0417601 | 55.072 | 69 | 31 | 0 | 31 | 99 | 127 | 195 | 4.22e-22 | 94.4 |
| Msa0126040 | MtrunA17_Chr5g0417561 | 66.667 | 51 | 17 | 0 | 46 | 96 | 121 | 171 | 2.45e-20 | 89.4 |
| Msa0126040 | MtrunA17_Chr5g0417551 | 66.667 | 51 | 17 | 0 | 46 | 96 | 129 | 179 | 3.65e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0126040 | AT4G24060.1 | 39.481 | 347 | 134 | 13 | 1 | 277 | 1 | 341 | 3.95e-56 | 184 |
| Msa0126040 | AT3G61850.5 | 42.960 | 277 | 103 | 15 | 37 | 277 | 55 | 312 | 4.72e-47 | 159 |
| Msa0126040 | AT3G61850.4 | 42.960 | 277 | 103 | 15 | 37 | 277 | 67 | 324 | 7.88e-47 | 159 |
| Msa0126040 | AT3G61850.2 | 42.529 | 261 | 99 | 14 | 37 | 277 | 55 | 284 | 9.93e-47 | 158 |
| Msa0126040 | AT3G61850.3 | 42.529 | 261 | 99 | 14 | 37 | 277 | 55 | 284 | 9.93e-47 | 158 |
| Msa0126040 | AT3G61850.1 | 42.529 | 261 | 99 | 14 | 37 | 277 | 67 | 296 | 2.13e-46 | 157 |
| Msa0126040 | AT1G64620.1 | 37.752 | 347 | 130 | 14 | 1 | 270 | 1 | 338 | 2.97e-43 | 151 |
| Msa0126040 | AT2G46590.1 | 40.193 | 311 | 112 | 16 | 31 | 277 | 57 | 357 | 1.21e-38 | 139 |
| Msa0126040 | AT2G46590.2 | 40.193 | 311 | 112 | 16 | 31 | 277 | 69 | 369 | 1.36e-38 | 139 |
| Msa0126040 | AT5G60200.1 | 52.885 | 104 | 47 | 1 | 38 | 139 | 49 | 152 | 3.74e-33 | 122 |
| Msa0126040 | AT1G21340.1 | 45.833 | 144 | 68 | 4 | 40 | 176 | 31 | 171 | 2.61e-31 | 117 |
| Msa0126040 | AT1G51700.1 | 59.756 | 82 | 33 | 0 | 35 | 116 | 24 | 105 | 2.70e-31 | 115 |
| Msa0126040 | AT3G55370.1 | 69.118 | 68 | 21 | 0 | 41 | 108 | 73 | 140 | 4.15e-30 | 115 |
| Msa0126040 | AT3G55370.2 | 69.118 | 68 | 21 | 0 | 41 | 108 | 73 | 140 | 4.16e-30 | 116 |
| Msa0126040 | AT3G55370.3 | 59.756 | 82 | 31 | 1 | 27 | 108 | 106 | 185 | 5.04e-30 | 116 |
| Msa0126040 | AT4G00940.1 | 82.759 | 58 | 10 | 0 | 41 | 98 | 65 | 122 | 7.25e-30 | 114 |
| Msa0126040 | AT4G00940.3 | 82.759 | 58 | 10 | 0 | 41 | 98 | 65 | 122 | 7.25e-30 | 114 |
| Msa0126040 | AT4G00940.2 | 82.759 | 58 | 10 | 0 | 41 | 98 | 65 | 122 | 7.25e-30 | 114 |
| Msa0126040 | AT2G28510.1 | 50.820 | 122 | 50 | 2 | 42 | 155 | 46 | 165 | 2.15e-29 | 113 |
| Msa0126040 | AT3G45610.1 | 56.322 | 87 | 36 | 2 | 28 | 114 | 25 | 109 | 2.46e-29 | 112 |
| Msa0126040 | AT5G65590.1 | 68.657 | 67 | 21 | 0 | 39 | 105 | 36 | 102 | 7.01e-29 | 112 |
| Msa0126040 | AT3G52440.1 | 75.410 | 61 | 15 | 0 | 46 | 106 | 27 | 87 | 1.50e-28 | 109 |
| Msa0126040 | AT3G52440.2 | 75.410 | 61 | 15 | 0 | 46 | 106 | 46 | 106 | 2.04e-28 | 110 |
| Msa0126040 | AT1G07640.1 | 78.182 | 55 | 12 | 0 | 44 | 98 | 21 | 75 | 8.33e-28 | 108 |
| Msa0126040 | AT1G07640.2 | 78.182 | 55 | 12 | 0 | 44 | 98 | 77 | 131 | 9.77e-28 | 109 |
| Msa0126040 | AT2G37590.1 | 70.000 | 60 | 18 | 0 | 41 | 100 | 86 | 145 | 1.09e-27 | 109 |
| Msa0126040 | AT4G38000.1 | 61.538 | 65 | 25 | 0 | 34 | 98 | 31 | 95 | 1.17e-27 | 107 |
| Msa0126040 | AT1G07640.3 | 78.182 | 55 | 12 | 0 | 44 | 98 | 85 | 139 | 1.33e-27 | 109 |
| Msa0126040 | AT5G60850.1 | 57.333 | 75 | 32 | 0 | 41 | 115 | 48 | 122 | 1.72e-27 | 108 |
| Msa0126040 | AT3G21270.1 | 73.684 | 57 | 15 | 0 | 44 | 100 | 29 | 85 | 2.17e-27 | 105 |
| Msa0126040 | AT1G28310.1 | 48.624 | 109 | 56 | 0 | 44 | 152 | 27 | 135 | 2.82e-27 | 107 |
| Msa0126040 | AT5G66940.1 | 65.152 | 66 | 23 | 0 | 40 | 105 | 28 | 93 | 3.15e-27 | 105 |
| Msa0126040 | AT3G50410.1 | 61.429 | 70 | 27 | 0 | 29 | 98 | 15 | 84 | 3.23e-27 | 106 |
| Msa0126040 | AT1G28310.2 | 48.624 | 109 | 56 | 0 | 44 | 152 | 51 | 159 | 3.47e-27 | 108 |
| Msa0126040 | AT2G28810.2 | 67.213 | 61 | 20 | 0 | 35 | 95 | 68 | 128 | 8.92e-27 | 106 |
| Msa0126040 | AT2G28810.1 | 67.213 | 61 | 20 | 0 | 35 | 95 | 85 | 145 | 1.26e-26 | 106 |
| Msa0126040 | AT5G02460.1 | 54.430 | 79 | 34 | 1 | 20 | 98 | 73 | 149 | 9.29e-26 | 105 |
| Msa0126040 | AT5G62940.1 | 72.131 | 61 | 14 | 1 | 34 | 94 | 66 | 123 | 1.19e-25 | 104 |
| Msa0126040 | AT1G47655.1 | 61.538 | 65 | 25 | 0 | 29 | 93 | 14 | 78 | 1.66e-25 | 100 |
| Msa0126040 | AT4G21050.1 | 68.333 | 60 | 19 | 0 | 46 | 105 | 26 | 85 | 1.84e-24 | 98.2 |
| Msa0126040 | AT2G34140.1 | 49.398 | 83 | 38 | 1 | 14 | 96 | 32 | 110 | 2.52e-24 | 96.7 |
| Msa0126040 | AT1G69570.1 | 60.526 | 76 | 26 | 1 | 28 | 103 | 120 | 191 | 3.91e-24 | 100 |
| Msa0126040 | AT1G29160.1 | 50.667 | 75 | 37 | 0 | 23 | 97 | 41 | 115 | 9.94e-24 | 95.1 |
| Msa0126040 | AT5G62430.1 | 53.947 | 76 | 31 | 1 | 24 | 99 | 38 | 109 | 1.12e-23 | 97.8 |
| Msa0126040 | AT5G39660.3 | 43.878 | 98 | 51 | 1 | 38 | 135 | 132 | 225 | 1.28e-23 | 99.8 |
| Msa0126040 | AT5G39660.1 | 43.878 | 98 | 51 | 1 | 38 | 135 | 132 | 225 | 1.28e-23 | 99.8 |
| Msa0126040 | AT5G39660.2 | 43.878 | 98 | 51 | 1 | 38 | 135 | 132 | 225 | 1.28e-23 | 99.8 |
| Msa0126040 | AT3G47500.1 | 63.793 | 58 | 21 | 0 | 44 | 101 | 110 | 167 | 3.18e-23 | 98.6 |
| Msa0126040 | AT1G26790.1 | 54.545 | 77 | 31 | 1 | 20 | 96 | 91 | 163 | 1.04e-22 | 96.7 |
| Msa0126040 | AT4G21040.1 | 75.510 | 49 | 12 | 0 | 46 | 94 | 27 | 75 | 1.14e-22 | 94.0 |
| Msa0126040 | AT4G21080.1 | 75.510 | 49 | 12 | 0 | 46 | 94 | 27 | 75 | 5.77e-22 | 92.4 |
| Msa0126040 | AT4G21030.1 | 53.333 | 60 | 28 | 0 | 46 | 105 | 23 | 82 | 2.04e-13 | 67.8 |
Find 82 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATATTGCCTTCTATTAA+TGG | 0.125175 | 1_3:-54910519 | None:intergenic |
| GAAGGCCAAGATCTAAATTT+AGG | 0.134252 | 1_3:+54910870 | Msa0126040:CDS |
| CTTCTTCATGATGGATCTTA+TGG | 0.177246 | 1_3:-54910851 | None:intergenic |
| CATGATGGATCTTATGGTTT+TGG | 0.189658 | 1_3:-54910845 | None:intergenic |
| GCTTCTTGTTTCTGTTGTTT+TGG | 0.223578 | 1_3:-54910585 | None:intergenic |
| TTGAATATTGAAGGAGATTA+TGG | 0.238550 | 1_3:+54910491 | Msa0126040:intron |
| CCCTCACATATCTGATCATT+TGG | 0.252769 | 1_3:+54910896 | Msa0126040:CDS |
| TGATGGATTTGAAACAAAAT+TGG | 0.267429 | 1_3:-54910793 | None:intergenic |
| TAACCCAACAATATTGGATT+TGG | 0.276934 | 1_3:+54911205 | Msa0126040:CDS |
| TACAAATAACCCAACAATAT+TGG | 0.279491 | 1_3:+54911199 | Msa0126040:CDS |
| GGTGGTGCAGAAGTAGAAAA+AGG | 0.288489 | 1_3:-54910042 | None:intergenic |
| TTCCTGTTGGTGGTGGTTCT+AGG | 0.290051 | 1_3:+54910739 | Msa0126040:CDS |
| CCAATGAATTTCTGTTTAGA+TGG | 0.293399 | 1_3:+54911071 | Msa0126040:CDS |
| TTGATTGTTGTTGTATATAT+TGG | 0.297614 | 1_3:+54911638 | Msa0126040:three_prime_UTR |
| TTCATGCCTGCTCAAGTTCA+AGG | 0.318142 | 1_3:+54911014 | Msa0126040:CDS |
| AAGGATATTCAACAGGGATT+TGG | 0.319140 | 1_3:+54911255 | Msa0126040:CDS |
| TTCTTCTACTTCTTCAGCAT+TGG | 0.346624 | 1_3:+54910944 | Msa0126040:CDS |
| TTTGGATCAGAATAATAATA+AGG | 0.356949 | 1_3:+54911223 | Msa0126040:CDS |
| GGAACCCTAAATTTAGATCT+TGG | 0.357337 | 1_3:-54910875 | None:intergenic |
| AAGGCCAAGATCTAAATTTA+GGG | 0.366987 | 1_3:+54910871 | Msa0126040:CDS |
| GATCAACAAGGATATTCAAC+AGG | 0.388223 | 1_3:+54911248 | Msa0126040:CDS |
| TTTGGCTTCCTTTCCAACAT+AGG | 0.393371 | 1_3:-54910567 | None:intergenic |
| GATCCAAATCCAATATTGTT+GGG | 0.402423 | 1_3:-54911208 | None:intergenic |
| GCAAAACATGTAGAAGGTAT+TGG | 0.410442 | 1_3:+54910691 | Msa0126040:CDS |
| GATCTTGGCCTTCTTCATGA+TGG | 0.411783 | 1_3:-54910860 | None:intergenic |
| CAGGTTTGAGTTCAAGTTCA+AGG | 0.413495 | 1_3:+54910979 | Msa0126040:CDS |
| TTCTGTTTAGATGGGATCTC+AGG | 0.420885 | 1_3:+54911080 | Msa0126040:CDS |
| ACCAACAGGAATGTTTCTAA+TGG | 0.426405 | 1_3:-54910727 | None:intergenic |
| GGTAATTAGCCGATTCTACT+TGG | 0.434119 | 1_3:+54911600 | Msa0126040:three_prime_UTR |
| TTTCTTCTCTCTATTTCAAT+CGG | 0.436411 | 1_3:-54911387 | None:intergenic |
| GGGATTTGGACTGGAATGTT+GGG | 0.441281 | 1_3:+54911269 | Msa0126040:CDS |
| CCTGCTCAAGTTCAAGGTTG+TGG | 0.443611 | 1_3:+54911020 | Msa0126040:CDS |
| TTCCTAGAACCACCACCAAC+AGG | 0.444902 | 1_3:-54910741 | None:intergenic |
| CCATCTAAACAGAAATTCAT+TGG | 0.447886 | 1_3:-54911071 | None:intergenic |
| ACTGGAATGTTGGGAGGAGG+AGG | 0.456613 | 1_3:+54911278 | Msa0126040:CDS |
| TTTATTCCACCAAGTAGAAT+CGG | 0.459469 | 1_3:-54911609 | None:intergenic |
| ATTTCTGCAAAACATGTAGA+AGG | 0.460389 | 1_3:+54910685 | Msa0126040:CDS |
| AGGATCATGGTAATTTACTT+AGG | 0.462497 | 1_3:+54911301 | Msa0126040:exon |
| GCATTGGAGCTTCTTACTGC+AGG | 0.462786 | 1_3:+54910960 | Msa0126040:CDS |
| TGATCCAAATCCAATATTGT+TGG | 0.463007 | 1_3:-54911209 | None:intergenic |
| AGGGATTTGGACTGGAATGT+TGG | 0.470831 | 1_3:+54911268 | Msa0126040:CDS |
| CAATGAATTTCTGTTTAGAT+GGG | 0.475119 | 1_3:+54911072 | Msa0126040:CDS |
| TGGACTGGAATGTTGGGAGG+AGG | 0.475312 | 1_3:+54911275 | Msa0126040:CDS |
| GGAATGTTGGGAGGAGGAGG+AGG | 0.484270 | 1_3:+54911281 | Msa0126040:CDS |
| ACATGTTTCAAATCCTCAAA+AGG | 0.498889 | 1_3:-54911170 | None:intergenic |
| CATAAGATCCATCATGAAGA+AGG | 0.500791 | 1_3:+54910852 | Msa0126040:CDS |
| GAACACCTAGGCTAGCGTTA+AGG | 0.504804 | 1_3:+54911579 | Msa0126040:three_prime_UTR |
| AGAAACATTCCTGTTGGTGG+TGG | 0.512070 | 1_3:+54910732 | Msa0126040:CDS |
| AAGAGACAATTAGTGAAGGA+AGG | 0.513089 | 1_3:+54911138 | Msa0126040:CDS |
| TATTCAACAGGGATTTGGAC+TGG | 0.519358 | 1_3:+54911260 | Msa0126040:CDS |
| AGGCCATTGAGCTGTGTCCA+TGG | 0.529344 | 1_3:-54910218 | None:intergenic |
| ATTAGAAACATTCCTGTTGG+TGG | 0.530061 | 1_3:+54910729 | Msa0126040:CDS |
| GATCAAAGGATGAAGTTGAA+AGG | 0.535112 | 1_3:-54910174 | None:intergenic |
| TTTAGTTGAAAATTGAAAGG+TGG | 0.538140 | 1_3:-54910060 | None:intergenic |
| AGAGACAATTAGTGAAGGAA+GGG | 0.538775 | 1_3:+54911139 | Msa0126040:CDS |
| CCACAACCTTGAACTTGAGC+AGG | 0.540402 | 1_3:-54911020 | None:intergenic |
| TAGTTTCTAAGTATTAGAGA+TGG | 0.543992 | 1_3:+54911473 | Msa0126040:three_prime_UTR |
| AGGTTTGAGTTCAAGTTCAA+GGG | 0.544319 | 1_3:+54910980 | Msa0126040:CDS |
| AATTAGCCGATTCTACTTGG+TGG | 0.550109 | 1_3:+54911603 | Msa0126040:three_prime_UTR |
| AATTTACTTAGGAGAAGTCA+TGG | 0.552704 | 1_3:+54911312 | Msa0126040:exon |
| TCCATTAGAAACATTCCTGT+TGG | 0.554777 | 1_3:+54910726 | Msa0126040:CDS |
| AAGAAGCAATTAACTGTCCA+AGG | 0.557523 | 1_3:+54910601 | Msa0126040:CDS |
| GGACACAGCTCAATGGCCTC+AGG | 0.562549 | 1_3:+54910222 | Msa0126040:CDS |
| AATCCATGGACACAGCTCAA+TGG | 0.565082 | 1_3:+54910215 | Msa0126040:exon |
| TGTAGAAGGTATTGGACTCA+AGG | 0.565800 | 1_3:+54910699 | Msa0126040:CDS |
| ATGGTGAAGCCATTAATAGA+AGG | 0.568853 | 1_3:+54910510 | Msa0126040:CDS |
| TCATCTTCTTCATCAATCCA+TGG | 0.570459 | 1_3:+54910201 | Msa0126040:exon |
| TTAGATGGGATCTCAGGAAG+TGG | 0.574889 | 1_3:+54911086 | Msa0126040:CDS |
| TATGCAAGTACTCTTGATCA+TGG | 0.590246 | 1_3:+54911110 | Msa0126040:CDS |
| GTGTTAATTGAATTACACCT+TGG | 0.593541 | 1_3:-54910618 | None:intergenic |
| ATTTGGACTGGAATGTTGGG+AGG | 0.599027 | 1_3:+54911272 | Msa0126040:CDS |
| ACTTGCTTAAAATCTTGCAA+AGG | 0.603902 | 1_3:-54911047 | None:intergenic |
| CCAAATGATCAGATATGTGA+GGG | 0.610063 | 1_3:-54910896 | None:intergenic |
| AAGAAGATGATGATGATCAA+AGG | 0.617162 | 1_3:-54910188 | None:intergenic |
| TTATCAACAAGAATTAGTGA+TGG | 0.619446 | 1_3:+54911423 | Msa0126040:three_prime_UTR |
| AATTACCTTAACGCTAGCCT+AGG | 0.627968 | 1_3:-54911584 | None:intergenic |
| ACCAAATGATCAGATATGTG+AGG | 0.628381 | 1_3:-54910897 | None:intergenic |
| GTTCAAGAGACAATTAGTGA+AGG | 0.630784 | 1_3:+54911134 | Msa0126040:CDS |
| TTATAGGAATGTGAGTGGGG+CGG | 0.652957 | 1_3:-54910010 | None:intergenic |
| AGAAGGTATTGGACTCAAGG+TGG | 0.674278 | 1_3:+54910702 | Msa0126040:CDS |
| AATAATAAGGAAGATCAACA+AGG | 0.712044 | 1_3:+54911236 | Msa0126040:CDS |
| ATCAACAAGGATATTCAACA+GGG | 0.718207 | 1_3:+54911249 | Msa0126040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTATTTTGAATATTGA+AGG | + | chr1_3:54910482-54910501 | Msa0126040:intron | 10.0% |
| !!! | TTTTATTTTGAACATTTTTA+CGG | + | chr1_3:54911672-54911691 | Msa0126040:three_prime_UTR | 10.0% |
| !!! | TTAATTATTTTGAATATTGA+AGG | + | chr1_3:54910482-54910501 | Msa0126040:intron | 10.0% |
| !!! | TTTTATTTTGAACATTTTTA+CGG | + | chr1_3:54911672-54911691 | Msa0126040:three_prime_UTR | 10.0% |
| !!! | TTTTTTAGTTGAAAATTGAA+AGG | - | chr1_3:54910066-54910085 | None:intergenic | 15.0% |
| !!! | TTTTTTAGTTGAAAATTGAA+AGG | - | chr1_3:54910066-54910085 | None:intergenic | 15.0% |
| !!! | AAAAAGGGAATGTTTTTTAT+AGG | - | chr1_3:54910029-54910048 | None:intergenic | 20.0% |
| !! | TCTTTATTGAAAAAAGCAAA+TGG | - | chr1_3:54910326-54910345 | None:intergenic | 20.0% |
| !! | TTTGGATCAGAATAATAATA+AGG | + | chr1_3:54911223-54911242 | Msa0126040:CDS | 20.0% |
| !!! | TTGATTGTTGTTGTATATAT+TGG | + | chr1_3:54911638-54911657 | Msa0126040:three_prime_UTR | 20.0% |
| !!! | AAAAAGGGAATGTTTTTTAT+AGG | - | chr1_3:54910029-54910048 | None:intergenic | 20.0% |
| !! | TCTTTATTGAAAAAAGCAAA+TGG | - | chr1_3:54910326-54910345 | None:intergenic | 20.0% |
| !! | TTTGGATCAGAATAATAATA+AGG | + | chr1_3:54911223-54911242 | Msa0126040:CDS | 20.0% |
| !!! | TTGATTGTTGTTGTATATAT+TGG | + | chr1_3:54911638-54911657 | Msa0126040:three_prime_UTR | 20.0% |
| !!! | TTTTTTATAGGAATGTGAGT+GGG | - | chr1_3:54910017-54910036 | None:intergenic | 25.0% |
| ! | TTTAGTTGAAAATTGAAAGG+TGG | - | chr1_3:54910063-54910082 | None:intergenic | 25.0% |
| ! | AAACTTATATGCAAAGTACA+TGG | - | chr1_3:54910260-54910279 | None:intergenic | 25.0% |
| !!! | GAAAAATTGAAACTTGTTGA+AGG | - | chr1_3:54910349-54910368 | None:intergenic | 25.0% |
| !! | GTGAGTATATTTGTATCTTT+TGG | - | chr1_3:54910435-54910454 | None:intergenic | 25.0% |
| ! | TTGAATATTGAAGGAGATTA+TGG | + | chr1_3:54910491-54910510 | Msa0126040:intron | 25.0% |
| ! | ACAATATTGCCTTCTATTAA+TGG | - | chr1_3:54910522-54910541 | None:intergenic | 25.0% |
| !!! | TGATGGATTTGAAACAAAAT+TGG | - | chr1_3:54910796-54910815 | None:intergenic | 25.0% |
| !!! | TCAAGTATGTTTTTTGTTGA+AGG | - | chr1_3:54910819-54910838 | None:intergenic | 25.0% |
| ! | CAATGAATTTCTGTTTAGAT+GGG | + | chr1_3:54911072-54911091 | Msa0126040:CDS | 25.0% |
| ! | TACAAATAACCCAACAATAT+TGG | + | chr1_3:54911199-54911218 | Msa0126040:CDS | 25.0% |
| ! | AATAATAAGGAAGATCAACA+AGG | + | chr1_3:54911236-54911255 | Msa0126040:CDS | 25.0% |
| ! | TTTCTTCTCTCTATTTCAAT+CGG | - | chr1_3:54911390-54911409 | None:intergenic | 25.0% |
| ! | TTATCAACAAGAATTAGTGA+TGG | + | chr1_3:54911423-54911442 | Msa0126040:three_prime_UTR | 25.0% |
| !! | AGAATTAGTGATGGAAAAAA+AGG | + | chr1_3:54911432-54911451 | Msa0126040:three_prime_UTR | 25.0% |
| ! | TAGTTTCTAAGTATTAGAGA+TGG | + | chr1_3:54911473-54911492 | Msa0126040:three_prime_UTR | 25.0% |
| !!! | TTTTTTATAGGAATGTGAGT+GGG | - | chr1_3:54910017-54910036 | None:intergenic | 25.0% |
| ! | TTTAGTTGAAAATTGAAAGG+TGG | - | chr1_3:54910063-54910082 | None:intergenic | 25.0% |
| ! | AAACTTATATGCAAAGTACA+TGG | - | chr1_3:54910260-54910279 | None:intergenic | 25.0% |
| !!! | GAAAAATTGAAACTTGTTGA+AGG | - | chr1_3:54910349-54910368 | None:intergenic | 25.0% |
| !! | GTGAGTATATTTGTATCTTT+TGG | - | chr1_3:54910435-54910454 | None:intergenic | 25.0% |
| ! | TTGAATATTGAAGGAGATTA+TGG | + | chr1_3:54910491-54910510 | Msa0126040:intron | 25.0% |
| ! | ACAATATTGCCTTCTATTAA+TGG | - | chr1_3:54910522-54910541 | None:intergenic | 25.0% |
| !!! | TGATGGATTTGAAACAAAAT+TGG | - | chr1_3:54910796-54910815 | None:intergenic | 25.0% |
| !!! | TCAAGTATGTTTTTTGTTGA+AGG | - | chr1_3:54910819-54910838 | None:intergenic | 25.0% |
| ! | CAATGAATTTCTGTTTAGAT+GGG | + | chr1_3:54911072-54911091 | Msa0126040:CDS | 25.0% |
| ! | TACAAATAACCCAACAATAT+TGG | + | chr1_3:54911199-54911218 | Msa0126040:CDS | 25.0% |
| ! | AATAATAAGGAAGATCAACA+AGG | + | chr1_3:54911236-54911255 | Msa0126040:CDS | 25.0% |
| ! | TTTCTTCTCTCTATTTCAAT+CGG | - | chr1_3:54911390-54911409 | None:intergenic | 25.0% |
| ! | TTATCAACAAGAATTAGTGA+TGG | + | chr1_3:54911423-54911442 | Msa0126040:three_prime_UTR | 25.0% |
| !! | AGAATTAGTGATGGAAAAAA+AGG | + | chr1_3:54911432-54911451 | Msa0126040:three_prime_UTR | 25.0% |
| ! | TAGTTTCTAAGTATTAGAGA+TGG | + | chr1_3:54911473-54911492 | Msa0126040:three_prime_UTR | 25.0% |
| ! | TTTTTATAGGAATGTGAGTG+GGG | - | chr1_3:54910016-54910035 | None:intergenic | 30.0% |
| !!! | GTTTTTTATAGGAATGTGAG+TGG | - | chr1_3:54910018-54910037 | None:intergenic | 30.0% |
| ! | AAGAAGATGATGATGATCAA+AGG | - | chr1_3:54910191-54910210 | None:intergenic | 30.0% |
| ! | ATGGATTAATTAGTTACCTG+AGG | - | chr1_3:54910241-54910260 | None:intergenic | 30.0% |
| TACATGTGAAAAACCTATGT+TGG | + | chr1_3:54910554-54910573 | Msa0126040:CDS | 30.0% | |
| GTGTTAATTGAATTACACCT+TGG | - | chr1_3:54910621-54910640 | None:intergenic | 30.0% | |
| ! | CATGTTTTGCAGAAATATCT+TGG | - | chr1_3:54910681-54910700 | None:intergenic | 30.0% |
| ATTTCTGCAAAACATGTAGA+AGG | + | chr1_3:54910685-54910704 | Msa0126040:CDS | 30.0% | |
| !!! | ATGTTTTTTGTTGAAGGTGA+TGG | - | chr1_3:54910813-54910832 | None:intergenic | 30.0% |
| AAGGCCAAGATCTAAATTTA+GGG | + | chr1_3:54910871-54910890 | Msa0126040:CDS | 30.0% | |
| ACTTGCTTAAAATCTTGCAA+AGG | - | chr1_3:54911050-54911069 | None:intergenic | 30.0% | |
| CCATCTAAACAGAAATTCAT+TGG | - | chr1_3:54911074-54911093 | None:intergenic | 30.0% | |
| CCAATGAATTTCTGTTTAGA+TGG | + | chr1_3:54911071-54911090 | Msa0126040:CDS | 30.0% | |
| ACATGTTTCAAATCCTCAAA+AGG | - | chr1_3:54911173-54911192 | None:intergenic | 30.0% | |
| TAACCCAACAATATTGGATT+TGG | + | chr1_3:54911205-54911224 | Msa0126040:CDS | 30.0% | |
| GATCCAAATCCAATATTGTT+GGG | - | chr1_3:54911211-54911230 | None:intergenic | 30.0% | |
| TGATCCAAATCCAATATTGT+TGG | - | chr1_3:54911212-54911231 | None:intergenic | 30.0% | |
| ATCAACAAGGATATTCAACA+GGG | + | chr1_3:54911249-54911268 | Msa0126040:CDS | 30.0% | |
| AGGATCATGGTAATTTACTT+AGG | + | chr1_3:54911301-54911320 | Msa0126040:exon | 30.0% | |
| AATTTACTTAGGAGAAGTCA+TGG | + | chr1_3:54911312-54911331 | Msa0126040:exon | 30.0% | |
| TTTATTCCACCAAGTAGAAT+CGG | - | chr1_3:54911612-54911631 | None:intergenic | 30.0% | |
| ! | TTTTTATAGGAATGTGAGTG+GGG | - | chr1_3:54910016-54910035 | None:intergenic | 30.0% |
| !!! | GTTTTTTATAGGAATGTGAG+TGG | - | chr1_3:54910018-54910037 | None:intergenic | 30.0% |
| ! | AAGAAGATGATGATGATCAA+AGG | - | chr1_3:54910191-54910210 | None:intergenic | 30.0% |
| ! | ATGGATTAATTAGTTACCTG+AGG | - | chr1_3:54910241-54910260 | None:intergenic | 30.0% |
| TACATGTGAAAAACCTATGT+TGG | + | chr1_3:54910554-54910573 | Msa0126040:CDS | 30.0% | |
| GTGTTAATTGAATTACACCT+TGG | - | chr1_3:54910621-54910640 | None:intergenic | 30.0% | |
| ! | CATGTTTTGCAGAAATATCT+TGG | - | chr1_3:54910681-54910700 | None:intergenic | 30.0% |
| ATTTCTGCAAAACATGTAGA+AGG | + | chr1_3:54910685-54910704 | Msa0126040:CDS | 30.0% | |
| !!! | ATGTTTTTTGTTGAAGGTGA+TGG | - | chr1_3:54910813-54910832 | None:intergenic | 30.0% |
| AAGGCCAAGATCTAAATTTA+GGG | + | chr1_3:54910871-54910890 | Msa0126040:CDS | 30.0% | |
| ACTTGCTTAAAATCTTGCAA+AGG | - | chr1_3:54911050-54911069 | None:intergenic | 30.0% | |
| CCATCTAAACAGAAATTCAT+TGG | - | chr1_3:54911074-54911093 | None:intergenic | 30.0% | |
| CCAATGAATTTCTGTTTAGA+TGG | + | chr1_3:54911071-54911090 | Msa0126040:CDS | 30.0% | |
| ACATGTTTCAAATCCTCAAA+AGG | - | chr1_3:54911173-54911192 | None:intergenic | 30.0% | |
| TAACCCAACAATATTGGATT+TGG | + | chr1_3:54911205-54911224 | Msa0126040:CDS | 30.0% | |
| GATCCAAATCCAATATTGTT+GGG | - | chr1_3:54911211-54911230 | None:intergenic | 30.0% | |
| TGATCCAAATCCAATATTGT+TGG | - | chr1_3:54911212-54911231 | None:intergenic | 30.0% | |
| ATCAACAAGGATATTCAACA+GGG | + | chr1_3:54911249-54911268 | Msa0126040:CDS | 30.0% | |
| AGGATCATGGTAATTTACTT+AGG | + | chr1_3:54911301-54911320 | Msa0126040:exon | 30.0% | |
| AATTTACTTAGGAGAAGTCA+TGG | + | chr1_3:54911312-54911331 | Msa0126040:exon | 30.0% | |
| TTTATTCCACCAAGTAGAAT+CGG | - | chr1_3:54911612-54911631 | None:intergenic | 30.0% | |
| GATCAAAGGATGAAGTTGAA+AGG | - | chr1_3:54910177-54910196 | None:intergenic | 35.0% | |
| TCATCTTCTTCATCAATCCA+TGG | + | chr1_3:54910201-54910220 | Msa0126040:exon | 35.0% | |
| ATGGTGAAGCCATTAATAGA+AGG | + | chr1_3:54910510-54910529 | Msa0126040:CDS | 35.0% | |
| GTGAAAAACCTATGTTGGAA+AGG | + | chr1_3:54910559-54910578 | Msa0126040:CDS | 35.0% | |
| !!! | GCTTCTTGTTTCTGTTGTTT+TGG | - | chr1_3:54910588-54910607 | None:intergenic | 35.0% |
| AAGAAGCAATTAACTGTCCA+AGG | + | chr1_3:54910601-54910620 | Msa0126040:CDS | 35.0% | |
| ! | GCAAAACATGTAGAAGGTAT+TGG | + | chr1_3:54910691-54910710 | Msa0126040:CDS | 35.0% |
| TCCATTAGAAACATTCCTGT+TGG | + | chr1_3:54910726-54910745 | Msa0126040:CDS | 35.0% | |
| ! | ACCAACAGGAATGTTTCTAA+TGG | - | chr1_3:54910730-54910749 | None:intergenic | 35.0% |
| ATTAGAAACATTCCTGTTGG+TGG | + | chr1_3:54910729-54910748 | Msa0126040:CDS | 35.0% | |
| !!! | CATGATGGATCTTATGGTTT+TGG | - | chr1_3:54910848-54910867 | None:intergenic | 35.0% |
| !! | CTTCTTCATGATGGATCTTA+TGG | - | chr1_3:54910854-54910873 | None:intergenic | 35.0% |
| CATAAGATCCATCATGAAGA+AGG | + | chr1_3:54910852-54910871 | Msa0126040:CDS | 35.0% | |
| GAAGGCCAAGATCTAAATTT+AGG | + | chr1_3:54910870-54910889 | Msa0126040:CDS | 35.0% | |
| GGAACCCTAAATTTAGATCT+TGG | - | chr1_3:54910878-54910897 | None:intergenic | 35.0% | |
| CCAAATGATCAGATATGTGA+GGG | - | chr1_3:54910899-54910918 | None:intergenic | 35.0% | |
| ACCAAATGATCAGATATGTG+AGG | - | chr1_3:54910900-54910919 | None:intergenic | 35.0% | |
| TTCTTCTACTTCTTCAGCAT+TGG | + | chr1_3:54910944-54910963 | Msa0126040:CDS | 35.0% | |
| ! | AGGTTTGAGTTCAAGTTCAA+GGG | + | chr1_3:54910980-54910999 | Msa0126040:CDS | 35.0% |
| TATGCAAGTACTCTTGATCA+TGG | + | chr1_3:54911110-54911129 | Msa0126040:CDS | 35.0% | |
| GTTCAAGAGACAATTAGTGA+AGG | + | chr1_3:54911134-54911153 | Msa0126040:CDS | 35.0% | |
| AAGAGACAATTAGTGAAGGA+AGG | + | chr1_3:54911138-54911157 | Msa0126040:CDS | 35.0% | |
| AGAGACAATTAGTGAAGGAA+GGG | + | chr1_3:54911139-54911158 | Msa0126040:CDS | 35.0% | |
| !!! | AAGGGTTTTGTTTCCTTTTG+AGG | + | chr1_3:54911157-54911176 | Msa0126040:CDS | 35.0% |
| GATCAACAAGGATATTCAAC+AGG | + | chr1_3:54911248-54911267 | Msa0126040:CDS | 35.0% | |
| AAGGATATTCAACAGGGATT+TGG | + | chr1_3:54911255-54911274 | Msa0126040:CDS | 35.0% | |
| GATCAAAGGATGAAGTTGAA+AGG | - | chr1_3:54910177-54910196 | None:intergenic | 35.0% | |
| TCATCTTCTTCATCAATCCA+TGG | + | chr1_3:54910201-54910220 | Msa0126040:exon | 35.0% | |
| ATGGTGAAGCCATTAATAGA+AGG | + | chr1_3:54910510-54910529 | Msa0126040:CDS | 35.0% | |
| GTGAAAAACCTATGTTGGAA+AGG | + | chr1_3:54910559-54910578 | Msa0126040:CDS | 35.0% | |
| !!! | GCTTCTTGTTTCTGTTGTTT+TGG | - | chr1_3:54910588-54910607 | None:intergenic | 35.0% |
| AAGAAGCAATTAACTGTCCA+AGG | + | chr1_3:54910601-54910620 | Msa0126040:CDS | 35.0% | |
| ! | GCAAAACATGTAGAAGGTAT+TGG | + | chr1_3:54910691-54910710 | Msa0126040:CDS | 35.0% |
| TCCATTAGAAACATTCCTGT+TGG | + | chr1_3:54910726-54910745 | Msa0126040:CDS | 35.0% | |
| ! | ACCAACAGGAATGTTTCTAA+TGG | - | chr1_3:54910730-54910749 | None:intergenic | 35.0% |
| ATTAGAAACATTCCTGTTGG+TGG | + | chr1_3:54910729-54910748 | Msa0126040:CDS | 35.0% | |
| !!! | CATGATGGATCTTATGGTTT+TGG | - | chr1_3:54910848-54910867 | None:intergenic | 35.0% |
| !! | CTTCTTCATGATGGATCTTA+TGG | - | chr1_3:54910854-54910873 | None:intergenic | 35.0% |
| CATAAGATCCATCATGAAGA+AGG | + | chr1_3:54910852-54910871 | Msa0126040:CDS | 35.0% | |
| GAAGGCCAAGATCTAAATTT+AGG | + | chr1_3:54910870-54910889 | Msa0126040:CDS | 35.0% | |
| GGAACCCTAAATTTAGATCT+TGG | - | chr1_3:54910878-54910897 | None:intergenic | 35.0% | |
| CCAAATGATCAGATATGTGA+GGG | - | chr1_3:54910899-54910918 | None:intergenic | 35.0% | |
| ACCAAATGATCAGATATGTG+AGG | - | chr1_3:54910900-54910919 | None:intergenic | 35.0% | |
| TTCTTCTACTTCTTCAGCAT+TGG | + | chr1_3:54910944-54910963 | Msa0126040:CDS | 35.0% | |
| ! | AGGTTTGAGTTCAAGTTCAA+GGG | + | chr1_3:54910980-54910999 | Msa0126040:CDS | 35.0% |
| TATGCAAGTACTCTTGATCA+TGG | + | chr1_3:54911110-54911129 | Msa0126040:CDS | 35.0% | |
| GTTCAAGAGACAATTAGTGA+AGG | + | chr1_3:54911134-54911153 | Msa0126040:CDS | 35.0% | |
| AAGAGACAATTAGTGAAGGA+AGG | + | chr1_3:54911138-54911157 | Msa0126040:CDS | 35.0% | |
| AGAGACAATTAGTGAAGGAA+GGG | + | chr1_3:54911139-54911158 | Msa0126040:CDS | 35.0% | |
| !!! | AAGGGTTTTGTTTCCTTTTG+AGG | + | chr1_3:54911157-54911176 | Msa0126040:CDS | 35.0% |
| GATCAACAAGGATATTCAAC+AGG | + | chr1_3:54911248-54911267 | Msa0126040:CDS | 35.0% | |
| AAGGATATTCAACAGGGATT+TGG | + | chr1_3:54911255-54911274 | Msa0126040:CDS | 35.0% | |
| GTGGTGCAGAAGTAGAAAAA+GGG | - | chr1_3:54910044-54910063 | None:intergenic | 40.0% | |
| ! | TTTGGCTTCCTTTCCAACAT+AGG | - | chr1_3:54910570-54910589 | None:intergenic | 40.0% |
| !! | TGTAGAAGGTATTGGACTCA+AGG | + | chr1_3:54910699-54910718 | Msa0126040:CDS | 40.0% |
| CCCTCACATATCTGATCATT+TGG | + | chr1_3:54910896-54910915 | Msa0126040:CDS | 40.0% | |
| ! | CAGGTTTGAGTTCAAGTTCA+AGG | + | chr1_3:54910979-54910998 | Msa0126040:CDS | 40.0% |
| TTCTGTTTAGATGGGATCTC+AGG | + | chr1_3:54911080-54911099 | Msa0126040:CDS | 40.0% | |
| TATTCAACAGGGATTTGGAC+TGG | + | chr1_3:54911260-54911279 | Msa0126040:CDS | 40.0% | |
| ! | AATTACCTTAACGCTAGCCT+AGG | - | chr1_3:54911587-54911606 | None:intergenic | 40.0% |
| ! | GGTAATTAGCCGATTCTACT+TGG | + | chr1_3:54911600-54911619 | Msa0126040:three_prime_UTR | 40.0% |
| ! | AATTAGCCGATTCTACTTGG+TGG | + | chr1_3:54911603-54911622 | Msa0126040:three_prime_UTR | 40.0% |
| GTGGTGCAGAAGTAGAAAAA+GGG | - | chr1_3:54910044-54910063 | None:intergenic | 40.0% | |
| ! | TTTGGCTTCCTTTCCAACAT+AGG | - | chr1_3:54910570-54910589 | None:intergenic | 40.0% |
| !! | TGTAGAAGGTATTGGACTCA+AGG | + | chr1_3:54910699-54910718 | Msa0126040:CDS | 40.0% |
| CCCTCACATATCTGATCATT+TGG | + | chr1_3:54910896-54910915 | Msa0126040:CDS | 40.0% | |
| ! | CAGGTTTGAGTTCAAGTTCA+AGG | + | chr1_3:54910979-54910998 | Msa0126040:CDS | 40.0% |
| TTCTGTTTAGATGGGATCTC+AGG | + | chr1_3:54911080-54911099 | Msa0126040:CDS | 40.0% | |
| TATTCAACAGGGATTTGGAC+TGG | + | chr1_3:54911260-54911279 | Msa0126040:CDS | 40.0% | |
| ! | AATTACCTTAACGCTAGCCT+AGG | - | chr1_3:54911587-54911606 | None:intergenic | 40.0% |
| ! | GGTAATTAGCCGATTCTACT+TGG | + | chr1_3:54911600-54911619 | Msa0126040:three_prime_UTR | 40.0% |
| ! | AATTAGCCGATTCTACTTGG+TGG | + | chr1_3:54911603-54911622 | Msa0126040:three_prime_UTR | 40.0% |
| GGTGGTGCAGAAGTAGAAAA+AGG | - | chr1_3:54910045-54910064 | None:intergenic | 45.0% | |
| AGAAAGAGAGAGAGAGAGAG+AGG | - | chr1_3:54910105-54910124 | None:intergenic | 45.0% | |
| AATCCATGGACACAGCTCAA+TGG | + | chr1_3:54910215-54910234 | Msa0126040:exon | 45.0% | |
| !! | AGAAGGTATTGGACTCAAGG+TGG | + | chr1_3:54910702-54910721 | Msa0126040:CDS | 45.0% |
| ! | AGAAACATTCCTGTTGGTGG+TGG | + | chr1_3:54910732-54910751 | Msa0126040:CDS | 45.0% |
| ! | GATCTTGGCCTTCTTCATGA+TGG | - | chr1_3:54910863-54910882 | None:intergenic | 45.0% |
| TTCATGCCTGCTCAAGTTCA+AGG | + | chr1_3:54911014-54911033 | Msa0126040:CDS | 45.0% | |
| TTAGATGGGATCTCAGGAAG+TGG | + | chr1_3:54911086-54911105 | Msa0126040:CDS | 45.0% | |
| ! | AGGGATTTGGACTGGAATGT+TGG | + | chr1_3:54911268-54911287 | Msa0126040:CDS | 45.0% |
| ! | GGGATTTGGACTGGAATGTT+GGG | + | chr1_3:54911269-54911288 | Msa0126040:CDS | 45.0% |
| ! | ATTTGGACTGGAATGTTGGG+AGG | + | chr1_3:54911272-54911291 | Msa0126040:CDS | 45.0% |
| ! | TGACGTCTTTTCGAACACCT+AGG | + | chr1_3:54911567-54911586 | Msa0126040:three_prime_UTR | 45.0% |
| GGTGGTGCAGAAGTAGAAAA+AGG | - | chr1_3:54910045-54910064 | None:intergenic | 45.0% | |
| AGAAAGAGAGAGAGAGAGAG+AGG | - | chr1_3:54910105-54910124 | None:intergenic | 45.0% | |
| AATCCATGGACACAGCTCAA+TGG | + | chr1_3:54910215-54910234 | Msa0126040:exon | 45.0% | |
| !! | AGAAGGTATTGGACTCAAGG+TGG | + | chr1_3:54910702-54910721 | Msa0126040:CDS | 45.0% |
| ! | AGAAACATTCCTGTTGGTGG+TGG | + | chr1_3:54910732-54910751 | Msa0126040:CDS | 45.0% |
| ! | GATCTTGGCCTTCTTCATGA+TGG | - | chr1_3:54910863-54910882 | None:intergenic | 45.0% |
| TTCATGCCTGCTCAAGTTCA+AGG | + | chr1_3:54911014-54911033 | Msa0126040:CDS | 45.0% | |
| TTAGATGGGATCTCAGGAAG+TGG | + | chr1_3:54911086-54911105 | Msa0126040:CDS | 45.0% | |
| ! | AGGGATTTGGACTGGAATGT+TGG | + | chr1_3:54911268-54911287 | Msa0126040:CDS | 45.0% |
| ! | GGGATTTGGACTGGAATGTT+GGG | + | chr1_3:54911269-54911288 | Msa0126040:CDS | 45.0% |
| ! | ATTTGGACTGGAATGTTGGG+AGG | + | chr1_3:54911272-54911291 | Msa0126040:CDS | 45.0% |
| ! | TGACGTCTTTTCGAACACCT+AGG | + | chr1_3:54911567-54911586 | Msa0126040:three_prime_UTR | 45.0% |
| !! | TTCCTGTTGGTGGTGGTTCT+AGG | + | chr1_3:54910739-54910758 | Msa0126040:CDS | 50.0% |
| TTCCTAGAACCACCACCAAC+AGG | - | chr1_3:54910744-54910763 | None:intergenic | 50.0% | |
| GCATTGGAGCTTCTTACTGC+AGG | + | chr1_3:54910960-54910979 | Msa0126040:CDS | 50.0% | |
| CCACAACCTTGAACTTGAGC+AGG | - | chr1_3:54911023-54911042 | None:intergenic | 50.0% | |
| CCTGCTCAAGTTCAAGGTTG+TGG | + | chr1_3:54911020-54911039 | Msa0126040:CDS | 50.0% | |
| GAACACCTAGGCTAGCGTTA+AGG | + | chr1_3:54911579-54911598 | Msa0126040:three_prime_UTR | 50.0% | |
| !! | TTCCTGTTGGTGGTGGTTCT+AGG | + | chr1_3:54910739-54910758 | Msa0126040:CDS | 50.0% |
| TTCCTAGAACCACCACCAAC+AGG | - | chr1_3:54910744-54910763 | None:intergenic | 50.0% | |
| GCATTGGAGCTTCTTACTGC+AGG | + | chr1_3:54910960-54910979 | Msa0126040:CDS | 50.0% | |
| CCACAACCTTGAACTTGAGC+AGG | - | chr1_3:54911023-54911042 | None:intergenic | 50.0% | |
| CCTGCTCAAGTTCAAGGTTG+TGG | + | chr1_3:54911020-54911039 | Msa0126040:CDS | 50.0% | |
| GAACACCTAGGCTAGCGTTA+AGG | + | chr1_3:54911579-54911598 | Msa0126040:three_prime_UTR | 50.0% | |
| AGGCCATTGAGCTGTGTCCA+TGG | - | chr1_3:54910221-54910240 | None:intergenic | 55.0% | |
| ! | TGGACTGGAATGTTGGGAGG+AGG | + | chr1_3:54911275-54911294 | Msa0126040:CDS | 55.0% |
| ACTGGAATGTTGGGAGGAGG+AGG | + | chr1_3:54911278-54911297 | Msa0126040:CDS | 55.0% | |
| AGGCCATTGAGCTGTGTCCA+TGG | - | chr1_3:54910221-54910240 | None:intergenic | 55.0% | |
| ! | TGGACTGGAATGTTGGGAGG+AGG | + | chr1_3:54911275-54911294 | Msa0126040:CDS | 55.0% |
| ACTGGAATGTTGGGAGGAGG+AGG | + | chr1_3:54911278-54911297 | Msa0126040:CDS | 55.0% | |
| GGACACAGCTCAATGGCCTC+AGG | + | chr1_3:54910222-54910241 | Msa0126040:CDS | 60.0% | |
| GGAATGTTGGGAGGAGGAGG+AGG | + | chr1_3:54911281-54911300 | Msa0126040:CDS | 60.0% | |
| TGGGAGGAGGAGGAGGATCA+TGG | + | chr1_3:54911288-54911307 | Msa0126040:CDS | 60.0% | |
| GGACACAGCTCAATGGCCTC+AGG | + | chr1_3:54910222-54910241 | Msa0126040:CDS | 60.0% | |
| GGAATGTTGGGAGGAGGAGG+AGG | + | chr1_3:54911281-54911300 | Msa0126040:CDS | 60.0% | |
| TGGGAGGAGGAGGAGGATCA+TGG | + | chr1_3:54911288-54911307 | Msa0126040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 54910012 | 54911733 | 54910012 | ID=Msa0126040;Name=Msa0126040 |
| chr1_3 | mRNA | 54910012 | 54911733 | 54910012 | ID=Msa0126040-mRNA-1;Parent=Msa0126040;Name=Msa0126040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=208|1|1|1|1|1|2|420|277 |
| chr1_3 | exon | 54910012 | 54910243 | 54910012 | ID=Msa0126040-mRNA-1:exon:16964;Parent=Msa0126040-mRNA-1 |
| chr1_3 | exon | 54910504 | 54911733 | 54910504 | ID=Msa0126040-mRNA-1:exon:16965;Parent=Msa0126040-mRNA-1 |
| chr1_3 | five_prime_UTR | 54910012 | 54910219 | 54910012 | ID=Msa0126040-mRNA-1:five_prime_utr;Parent=Msa0126040-mRNA-1 |
| chr1_3 | CDS | 54910220 | 54910243 | 54910220 | ID=Msa0126040-mRNA-1:cds;Parent=Msa0126040-mRNA-1 |
| chr1_3 | CDS | 54910504 | 54911313 | 54910504 | ID=Msa0126040-mRNA-1:cds;Parent=Msa0126040-mRNA-1 |
| chr1_3 | three_prime_UTR | 54911314 | 54911733 | 54911314 | ID=Msa0126040-mRNA-1:three_prime_utr;Parent=Msa0126040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
